Multiple sequence alignment - TraesCS7A01G200000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G200000 chr7A 100.000 8448 0 0 1 8448 162571551 162579998 0.000000e+00 15601.0
1 TraesCS7A01G200000 chr7A 97.112 277 8 0 6067 6343 162572603 162572879 1.280000e-127 468.0
2 TraesCS7A01G200000 chr7A 97.112 277 8 0 1053 1329 162577617 162577893 1.280000e-127 468.0
3 TraesCS7A01G200000 chr7A 91.667 48 4 0 10 57 548340707 548340754 5.470000e-07 67.6
4 TraesCS7A01G200000 chr1B 97.504 5328 93 9 1051 6343 551835310 551829988 0.000000e+00 9066.0
5 TraesCS7A01G200000 chr1B 81.033 1123 198 13 6342 7454 630644796 630645913 0.000000e+00 880.0
6 TraesCS7A01G200000 chr1B 98.195 277 5 0 1053 1329 551830264 551829988 1.270000e-132 484.0
7 TraesCS7A01G200000 chr1B 97.473 277 7 0 6067 6343 551835308 551835032 2.760000e-129 473.0
8 TraesCS7A01G200000 chr1B 86.364 286 26 5 514 796 2360935 2360660 4.960000e-77 300.0
9 TraesCS7A01G200000 chr1B 93.548 124 7 1 6055 6177 645140266 645140389 5.210000e-42 183.0
10 TraesCS7A01G200000 chr1B 94.828 116 6 0 1051 1166 347574895 347575010 1.870000e-41 182.0
11 TraesCS7A01G200000 chr1B 94.737 114 6 0 6067 6180 347574897 347575010 2.420000e-40 178.0
12 TraesCS7A01G200000 chr1B 94.595 111 6 0 1053 1163 645137656 645137766 1.130000e-38 172.0
13 TraesCS7A01G200000 chr1B 94.595 111 6 0 6067 6177 645137656 645137766 1.130000e-38 172.0
14 TraesCS7A01G200000 chr1B 94.595 111 6 0 1053 1163 645140279 645140389 1.130000e-38 172.0
15 TraesCS7A01G200000 chr4A 98.240 4603 66 6 1050 5646 544067646 544063053 0.000000e+00 8037.0
16 TraesCS7A01G200000 chr4A 98.037 764 14 1 5584 6346 544063055 544062292 0.000000e+00 1327.0
17 TraesCS7A01G200000 chr4A 98.195 277 5 0 1053 1329 544062572 544062296 1.270000e-132 484.0
18 TraesCS7A01G200000 chr4A 97.834 277 6 0 6067 6343 544067643 544067367 5.930000e-131 479.0
19 TraesCS7A01G200000 chr7D 97.010 2107 54 6 6346 8448 161390702 161392803 0.000000e+00 3533.0
20 TraesCS7A01G200000 chr7D 94.012 1887 95 6 1347 3217 614650342 614648458 0.000000e+00 2843.0
21 TraesCS7A01G200000 chr7D 84.158 505 53 15 1 486 161300013 161300509 1.660000e-126 464.0
22 TraesCS7A01G200000 chr7D 88.070 285 24 2 514 796 282878110 282878386 6.320000e-86 329.0
23 TraesCS7A01G200000 chr7D 90.870 230 19 1 1093 1322 614650564 614650337 2.960000e-79 307.0
24 TraesCS7A01G200000 chr7D 86.312 263 21 7 793 1052 161390454 161390704 1.080000e-68 272.0
25 TraesCS7A01G200000 chr7B 96.490 2108 61 8 6346 8448 123655625 123657724 0.000000e+00 3470.0
26 TraesCS7A01G200000 chr7B 95.658 806 33 2 1610 2414 683172564 683171760 0.000000e+00 1293.0
27 TraesCS7A01G200000 chr7B 90.066 453 27 12 1053 1493 683173046 683172600 9.510000e-159 571.0
28 TraesCS7A01G200000 chr7B 86.564 454 60 1 5650 6102 239775486 239775033 4.550000e-137 499.0
29 TraesCS7A01G200000 chr7B 88.421 285 21 9 6065 6343 683173048 683172770 4.890000e-87 333.0
30 TraesCS7A01G200000 chr7B 79.960 494 64 19 1 479 123653924 123654397 1.760000e-86 331.0
31 TraesCS7A01G200000 chr7B 84.651 215 11 9 860 1052 123655413 123655627 2.410000e-45 195.0
32 TraesCS7A01G200000 chr4D 76.738 3667 806 45 1284 4927 282068066 282071708 0.000000e+00 2002.0
33 TraesCS7A01G200000 chr4D 76.336 3668 821 46 1284 4927 445385799 445382155 0.000000e+00 1921.0
34 TraesCS7A01G200000 chr4D 78.632 1170 187 39 5050 6178 445382032 445380885 0.000000e+00 717.0
35 TraesCS7A01G200000 chr4D 78.383 1175 187 39 5047 6178 282071828 282072978 0.000000e+00 701.0
36 TraesCS7A01G200000 chr3D 76.179 3669 825 47 1284 4927 411658965 411655321 0.000000e+00 1888.0
37 TraesCS7A01G200000 chr3D 78.977 1075 163 38 5158 6176 411640917 411639850 0.000000e+00 675.0
38 TraesCS7A01G200000 chr3D 85.315 286 33 3 512 794 610972207 610972486 3.860000e-73 287.0
39 TraesCS7A01G200000 chr6B 76.127 2773 621 39 2175 4927 687409188 687406437 0.000000e+00 1415.0
40 TraesCS7A01G200000 chr6B 81.093 1116 192 16 6345 7449 16429055 16430162 0.000000e+00 874.0
41 TraesCS7A01G200000 chr6B 78.695 1042 199 20 6426 7454 21458846 21459877 0.000000e+00 673.0
42 TraesCS7A01G200000 chr6B 95.575 113 5 0 6066 6178 687401680 687401568 1.870000e-41 182.0
43 TraesCS7A01G200000 chr6B 95.536 112 5 0 1053 1164 687401679 687401568 6.740000e-41 180.0
44 TraesCS7A01G200000 chr6B 100.000 39 0 0 7994 8032 15747525 15747487 1.180000e-08 73.1
45 TraesCS7A01G200000 chr3B 76.386 2634 581 40 2314 4927 29398274 29395662 0.000000e+00 1380.0
46 TraesCS7A01G200000 chr3B 97.222 36 1 0 1464 1499 75332888 75332923 2.550000e-05 62.1
47 TraesCS7A01G200000 chr6D 81.973 1115 190 10 6346 7453 8967634 8968744 0.000000e+00 935.0
48 TraesCS7A01G200000 chr6D 80.074 1079 203 11 6384 7454 7885836 7886910 0.000000e+00 791.0
49 TraesCS7A01G200000 chr6D 87.000 300 28 7 516 813 59432077 59431787 2.270000e-85 327.0
50 TraesCS7A01G200000 chr2B 79.371 1144 213 17 6346 7476 89500006 89501139 0.000000e+00 784.0
51 TraesCS7A01G200000 chr2B 85.563 284 32 6 514 796 73611791 73612066 1.070000e-73 289.0
52 TraesCS7A01G200000 chr6A 77.705 1072 216 18 6417 7474 15914019 15912957 1.200000e-177 634.0
53 TraesCS7A01G200000 chr6A 85.765 281 30 8 516 794 615124980 615124708 1.070000e-73 289.0
54 TraesCS7A01G200000 chr5A 85.210 453 62 4 5651 6100 454806196 454806646 2.150000e-125 460.0
55 TraesCS7A01G200000 chr2A 87.762 286 24 3 514 796 39930257 39930534 2.940000e-84 324.0
56 TraesCS7A01G200000 chr1A 86.851 289 25 9 513 797 57745658 57745379 2.290000e-80 311.0
57 TraesCS7A01G200000 chr5B 84.965 286 31 11 514 796 660218322 660218046 6.460000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G200000 chr7A 162571551 162579998 8447 False 15601.000000 15601 100.000000 1 8448 1 chr7A.!!$F1 8447
1 TraesCS7A01G200000 chr1B 551829988 551835310 5322 True 9066.000000 9066 97.504000 1051 6343 1 chr1B.!!$R2 5292
2 TraesCS7A01G200000 chr1B 630644796 630645913 1117 False 880.000000 880 81.033000 6342 7454 1 chr1B.!!$F1 1112
3 TraesCS7A01G200000 chr4A 544062292 544067646 5354 True 2581.750000 8037 98.076500 1050 6346 4 chr4A.!!$R1 5296
4 TraesCS7A01G200000 chr7D 161390454 161392803 2349 False 1902.500000 3533 91.661000 793 8448 2 chr7D.!!$F3 7655
5 TraesCS7A01G200000 chr7D 614648458 614650564 2106 True 1575.000000 2843 92.441000 1093 3217 2 chr7D.!!$R1 2124
6 TraesCS7A01G200000 chr7B 123653924 123657724 3800 False 1332.000000 3470 87.033667 1 8448 3 chr7B.!!$F1 8447
7 TraesCS7A01G200000 chr7B 683171760 683173048 1288 True 732.333333 1293 91.381667 1053 6343 3 chr7B.!!$R2 5290
8 TraesCS7A01G200000 chr4D 282068066 282072978 4912 False 1351.500000 2002 77.560500 1284 6178 2 chr4D.!!$F1 4894
9 TraesCS7A01G200000 chr4D 445380885 445385799 4914 True 1319.000000 1921 77.484000 1284 6178 2 chr4D.!!$R1 4894
10 TraesCS7A01G200000 chr3D 411655321 411658965 3644 True 1888.000000 1888 76.179000 1284 4927 1 chr3D.!!$R2 3643
11 TraesCS7A01G200000 chr3D 411639850 411640917 1067 True 675.000000 675 78.977000 5158 6176 1 chr3D.!!$R1 1018
12 TraesCS7A01G200000 chr6B 687406437 687409188 2751 True 1415.000000 1415 76.127000 2175 4927 1 chr6B.!!$R2 2752
13 TraesCS7A01G200000 chr6B 16429055 16430162 1107 False 874.000000 874 81.093000 6345 7449 1 chr6B.!!$F1 1104
14 TraesCS7A01G200000 chr6B 21458846 21459877 1031 False 673.000000 673 78.695000 6426 7454 1 chr6B.!!$F2 1028
15 TraesCS7A01G200000 chr3B 29395662 29398274 2612 True 1380.000000 1380 76.386000 2314 4927 1 chr3B.!!$R1 2613
16 TraesCS7A01G200000 chr6D 8967634 8968744 1110 False 935.000000 935 81.973000 6346 7453 1 chr6D.!!$F2 1107
17 TraesCS7A01G200000 chr6D 7885836 7886910 1074 False 791.000000 791 80.074000 6384 7454 1 chr6D.!!$F1 1070
18 TraesCS7A01G200000 chr2B 89500006 89501139 1133 False 784.000000 784 79.371000 6346 7476 1 chr2B.!!$F2 1130
19 TraesCS7A01G200000 chr6A 15912957 15914019 1062 True 634.000000 634 77.705000 6417 7474 1 chr6A.!!$R1 1057

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 354 0.179084 ACAGTGGTCGTTCTGTGTGG 60.179 55.000 0.00 0.0 42.30 4.17 F
1267 2232 0.108329 CACGCCTACCTTTCCGTCAT 60.108 55.000 0.00 0.0 0.00 3.06 F
1819 2799 3.126831 CCCGATCAGCATAAGACTTCAC 58.873 50.000 0.00 0.0 0.00 3.18 F
3207 4201 1.563924 ATGAGGTAACGCCAGTACCA 58.436 50.000 7.63 0.0 46.39 3.25 F
4703 5700 1.479323 GTACCATCCAAGGCGTGACTA 59.521 52.381 0.76 0.0 0.00 2.59 F
6025 7157 0.179094 GGGATTGGTGATGTACGCGA 60.179 55.000 15.93 0.0 0.00 5.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 2496 1.620819 AGCTCCAGACACACTACAAGG 59.379 52.381 0.00 0.0 0.00 3.61 R
3207 4201 0.108138 GACGCCATGGCTAACACTCT 60.108 55.000 33.07 6.0 39.32 3.24 R
3663 4659 1.846007 TTAACAAATGCTCCGGCCAT 58.154 45.000 2.24 0.0 37.74 4.40 R
4862 5859 1.247567 CCAATGGCCTCTGTTTTCGT 58.752 50.000 3.32 0.0 0.00 3.85 R
6065 7198 0.538584 TGCTGCTAGGGACATCACAG 59.461 55.000 0.00 0.0 0.00 3.66 R
7495 8641 4.556942 TGTGTTGCATGTTTCTCTTGAG 57.443 40.909 0.00 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.569719 AAACTACCTAATCACCCCACTG 57.430 45.455 0.00 0.00 0.00 3.66
45 46 4.878878 CCTACCGAGGGATTTGCC 57.121 61.111 0.00 0.00 39.48 4.52
57 58 3.395941 AGGGATTTGCCGGAATTATCTCT 59.604 43.478 5.05 3.22 37.63 3.10
59 60 4.137543 GGATTTGCCGGAATTATCTCTGT 58.862 43.478 5.05 0.00 0.00 3.41
103 105 5.529800 GTCAACGGGGCTACAACATATATTT 59.470 40.000 0.00 0.00 0.00 1.40
106 108 5.305585 ACGGGGCTACAACATATATTTCTG 58.694 41.667 0.00 0.00 0.00 3.02
107 109 5.163237 ACGGGGCTACAACATATATTTCTGT 60.163 40.000 0.00 0.00 0.00 3.41
109 111 6.296026 GGGGCTACAACATATATTTCTGTCA 58.704 40.000 0.00 0.00 0.00 3.58
122 124 5.990120 ATTTCTGTCATCTCCTTTTTGGG 57.010 39.130 0.00 0.00 36.20 4.12
130 132 1.228429 TCCTTTTTGGGCGGTGAGG 60.228 57.895 0.00 0.00 36.20 3.86
139 141 1.449778 GGCGGTGAGGTTAGGCTTC 60.450 63.158 0.00 0.00 0.00 3.86
151 153 1.123077 TAGGCTTCCTCATCATGCGT 58.877 50.000 0.00 0.00 34.61 5.24
152 154 1.123077 AGGCTTCCTCATCATGCGTA 58.877 50.000 0.00 0.00 0.00 4.42
153 155 1.202580 AGGCTTCCTCATCATGCGTAC 60.203 52.381 0.00 0.00 0.00 3.67
154 156 0.855349 GCTTCCTCATCATGCGTACG 59.145 55.000 11.84 11.84 0.00 3.67
155 157 0.855349 CTTCCTCATCATGCGTACGC 59.145 55.000 32.49 32.49 42.35 4.42
156 158 0.869880 TTCCTCATCATGCGTACGCG 60.870 55.000 32.65 20.79 45.51 6.01
157 159 1.299089 CCTCATCATGCGTACGCGA 60.299 57.895 32.65 25.09 45.51 5.87
158 160 0.869880 CCTCATCATGCGTACGCGAA 60.870 55.000 32.65 21.42 45.51 4.70
159 161 0.500178 CTCATCATGCGTACGCGAAG 59.500 55.000 32.65 24.24 45.51 3.79
160 162 0.869880 TCATCATGCGTACGCGAAGG 60.870 55.000 32.65 21.92 45.51 3.46
161 163 2.237751 ATCATGCGTACGCGAAGGC 61.238 57.895 32.65 13.29 45.51 4.35
205 207 7.622893 TTCATATCGATTCAATGGTTCAACA 57.377 32.000 1.71 0.00 0.00 3.33
207 209 7.471721 TCATATCGATTCAATGGTTCAACAAC 58.528 34.615 1.71 0.00 0.00 3.32
210 212 3.906008 CGATTCAATGGTTCAACAACGAC 59.094 43.478 0.00 0.00 32.68 4.34
215 217 5.039984 TCAATGGTTCAACAACGACAATTG 58.960 37.500 3.24 3.24 32.68 2.32
216 218 2.803451 TGGTTCAACAACGACAATTGC 58.197 42.857 5.05 0.00 32.68 3.56
217 219 2.164422 TGGTTCAACAACGACAATTGCA 59.836 40.909 5.05 0.00 32.68 4.08
226 229 1.019673 CGACAATTGCAGATCCAGGG 58.980 55.000 5.05 0.00 0.00 4.45
230 233 1.133699 CAATTGCAGATCCAGGGGCTA 60.134 52.381 0.00 0.00 0.00 3.93
233 236 0.621571 TGCAGATCCAGGGGCTAGTT 60.622 55.000 0.00 0.00 0.00 2.24
237 240 2.507471 CAGATCCAGGGGCTAGTTCTTT 59.493 50.000 0.00 0.00 0.00 2.52
240 243 0.991920 CCAGGGGCTAGTTCTTTGGA 59.008 55.000 0.00 0.00 0.00 3.53
259 262 6.403866 TTGGAACATGTGCATAAAGACTTT 57.596 33.333 6.08 5.62 39.30 2.66
263 266 4.323417 ACATGTGCATAAAGACTTTCCGA 58.677 39.130 3.07 0.00 0.00 4.55
264 267 4.943705 ACATGTGCATAAAGACTTTCCGAT 59.056 37.500 3.07 0.00 0.00 4.18
266 269 6.597672 ACATGTGCATAAAGACTTTCCGATTA 59.402 34.615 3.07 0.00 0.00 1.75
268 271 7.624360 TGTGCATAAAGACTTTCCGATTATT 57.376 32.000 3.07 0.00 0.00 1.40
298 301 1.205893 GTCAGGCAGTCTCTGGTAAGG 59.794 57.143 0.00 0.00 33.36 2.69
310 319 2.658422 GTAAGGGACCGGCGACAA 59.342 61.111 9.30 0.00 0.00 3.18
311 320 1.739196 GTAAGGGACCGGCGACAAC 60.739 63.158 9.30 0.00 0.00 3.32
314 323 3.998672 GGGACCGGCGACAACTCA 61.999 66.667 9.30 0.00 0.00 3.41
322 331 0.924090 GGCGACAACTCATTCTAGCG 59.076 55.000 0.00 0.00 0.00 4.26
323 332 1.469251 GGCGACAACTCATTCTAGCGA 60.469 52.381 0.00 0.00 0.00 4.93
326 335 3.242518 CGACAACTCATTCTAGCGACAA 58.757 45.455 0.00 0.00 0.00 3.18
327 336 3.059570 CGACAACTCATTCTAGCGACAAC 59.940 47.826 0.00 0.00 0.00 3.32
343 352 1.066430 ACAACAGTGGTCGTTCTGTGT 60.066 47.619 0.00 0.00 42.95 3.72
344 353 1.327460 CAACAGTGGTCGTTCTGTGTG 59.673 52.381 0.00 0.00 42.95 3.82
345 354 0.179084 ACAGTGGTCGTTCTGTGTGG 60.179 55.000 0.00 0.00 42.30 4.17
346 355 0.179084 CAGTGGTCGTTCTGTGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
347 356 0.539986 AGTGGTCGTTCTGTGTGGTT 59.460 50.000 0.00 0.00 0.00 3.67
348 357 0.935196 GTGGTCGTTCTGTGTGGTTC 59.065 55.000 0.00 0.00 0.00 3.62
352 361 2.128035 GTCGTTCTGTGTGGTTCAGAG 58.872 52.381 0.00 0.00 41.87 3.35
353 362 2.028876 TCGTTCTGTGTGGTTCAGAGA 58.971 47.619 0.00 0.00 43.26 3.10
356 365 2.989840 GTTCTGTGTGGTTCAGAGATCG 59.010 50.000 0.00 0.00 44.12 3.69
357 366 2.514803 TCTGTGTGGTTCAGAGATCGA 58.485 47.619 0.00 0.00 40.72 3.59
358 367 2.229062 TCTGTGTGGTTCAGAGATCGAC 59.771 50.000 0.00 0.00 40.72 4.20
359 368 1.272490 TGTGTGGTTCAGAGATCGACC 59.728 52.381 0.00 0.00 0.00 4.79
360 369 1.546476 GTGTGGTTCAGAGATCGACCT 59.454 52.381 0.00 0.00 33.33 3.85
361 370 2.028930 GTGTGGTTCAGAGATCGACCTT 60.029 50.000 0.00 0.00 33.33 3.50
366 375 2.863137 GTTCAGAGATCGACCTTGATGC 59.137 50.000 0.00 0.00 0.00 3.91
378 387 8.856490 ATCGACCTTGATGCAATTTTTATTAC 57.144 30.769 0.00 0.00 0.00 1.89
381 390 9.086336 CGACCTTGATGCAATTTTTATTACATT 57.914 29.630 0.00 0.00 0.00 2.71
386 395 9.730705 TTGATGCAATTTTTATTACATTTGGGA 57.269 25.926 0.00 0.00 0.00 4.37
402 411 7.151976 ACATTTGGGAAGCTTTGTATTTGTAC 58.848 34.615 0.00 0.00 0.00 2.90
404 413 4.083565 TGGGAAGCTTTGTATTTGTACCC 58.916 43.478 0.00 2.76 34.80 3.69
406 415 3.754850 GGAAGCTTTGTATTTGTACCCGT 59.245 43.478 0.00 0.00 0.00 5.28
412 421 5.048852 GCTTTGTATTTGTACCCGTGGTAAA 60.049 40.000 4.59 0.00 40.12 2.01
415 424 8.627208 TTTGTATTTGTACCCGTGGTAAAATA 57.373 30.769 6.55 12.36 40.12 1.40
424 433 9.001542 TGTACCCGTGGTAAAATATTATAATGC 57.998 33.333 8.28 0.00 40.12 3.56
425 434 7.136289 ACCCGTGGTAAAATATTATAATGCG 57.864 36.000 8.28 0.07 32.11 4.73
426 435 6.711645 ACCCGTGGTAAAATATTATAATGCGT 59.288 34.615 8.28 0.00 32.11 5.24
445 454 2.419667 GTCCGGATCCGTTTTTGAGAA 58.580 47.619 31.22 3.70 37.81 2.87
446 455 2.415512 GTCCGGATCCGTTTTTGAGAAG 59.584 50.000 31.22 12.85 37.81 2.85
458 473 8.359642 TCCGTTTTTGAGAAGAATGAATGAATT 58.640 29.630 0.00 0.00 0.00 2.17
459 474 8.981647 CCGTTTTTGAGAAGAATGAATGAATTT 58.018 29.630 0.00 0.00 0.00 1.82
460 475 9.787626 CGTTTTTGAGAAGAATGAATGAATTTG 57.212 29.630 0.00 0.00 0.00 2.32
484 499 9.521841 TTGTTTATTTAGAGAGAGAGTGAGAGA 57.478 33.333 0.00 0.00 0.00 3.10
485 500 9.173021 TGTTTATTTAGAGAGAGAGTGAGAGAG 57.827 37.037 0.00 0.00 0.00 3.20
486 501 9.174166 GTTTATTTAGAGAGAGAGTGAGAGAGT 57.826 37.037 0.00 0.00 0.00 3.24
487 502 8.731275 TTATTTAGAGAGAGAGTGAGAGAGTG 57.269 38.462 0.00 0.00 0.00 3.51
505 1446 2.095263 AGTGAACGAATGAATTTGGCGG 60.095 45.455 0.00 0.00 0.00 6.13
527 1468 4.395959 CGGAAGCTAAGGGTATGTACAA 57.604 45.455 0.00 0.00 0.00 2.41
528 1469 4.957296 CGGAAGCTAAGGGTATGTACAAT 58.043 43.478 0.00 0.00 0.00 2.71
529 1470 4.750098 CGGAAGCTAAGGGTATGTACAATG 59.250 45.833 0.00 0.00 0.00 2.82
530 1471 5.063880 GGAAGCTAAGGGTATGTACAATGG 58.936 45.833 0.00 0.00 0.00 3.16
531 1472 5.397559 GGAAGCTAAGGGTATGTACAATGGT 60.398 44.000 0.00 0.00 0.00 3.55
532 1473 5.710409 AGCTAAGGGTATGTACAATGGTT 57.290 39.130 0.00 0.00 0.00 3.67
533 1474 6.074698 AGCTAAGGGTATGTACAATGGTTT 57.925 37.500 0.00 0.00 0.00 3.27
534 1475 6.490492 AGCTAAGGGTATGTACAATGGTTTT 58.510 36.000 0.00 0.00 0.00 2.43
535 1476 7.635648 AGCTAAGGGTATGTACAATGGTTTTA 58.364 34.615 0.00 0.00 0.00 1.52
536 1477 8.279361 AGCTAAGGGTATGTACAATGGTTTTAT 58.721 33.333 0.00 0.00 0.00 1.40
537 1478 8.565416 GCTAAGGGTATGTACAATGGTTTTATC 58.435 37.037 0.00 0.00 0.00 1.75
538 1479 9.847224 CTAAGGGTATGTACAATGGTTTTATCT 57.153 33.333 0.00 0.00 0.00 1.98
541 1482 9.847224 AGGGTATGTACAATGGTTTTATCTTAG 57.153 33.333 0.00 0.00 0.00 2.18
542 1483 9.841295 GGGTATGTACAATGGTTTTATCTTAGA 57.159 33.333 0.00 0.00 0.00 2.10
572 1513 9.818270 ACCATGTAGGATAAATGATGAAATGAT 57.182 29.630 0.00 0.00 38.63 2.45
576 1517 9.511272 TGTAGGATAAATGATGAAATGATGAGG 57.489 33.333 0.00 0.00 0.00 3.86
577 1518 9.512588 GTAGGATAAATGATGAAATGATGAGGT 57.487 33.333 0.00 0.00 0.00 3.85
578 1519 8.405418 AGGATAAATGATGAAATGATGAGGTG 57.595 34.615 0.00 0.00 0.00 4.00
579 1520 7.039923 AGGATAAATGATGAAATGATGAGGTGC 60.040 37.037 0.00 0.00 0.00 5.01
580 1521 5.925506 AAATGATGAAATGATGAGGTGCA 57.074 34.783 0.00 0.00 0.00 4.57
581 1522 5.515797 AATGATGAAATGATGAGGTGCAG 57.484 39.130 0.00 0.00 0.00 4.41
582 1523 4.224991 TGATGAAATGATGAGGTGCAGA 57.775 40.909 0.00 0.00 0.00 4.26
583 1524 4.591929 TGATGAAATGATGAGGTGCAGAA 58.408 39.130 0.00 0.00 0.00 3.02
584 1525 4.638865 TGATGAAATGATGAGGTGCAGAAG 59.361 41.667 0.00 0.00 0.00 2.85
585 1526 4.290711 TGAAATGATGAGGTGCAGAAGA 57.709 40.909 0.00 0.00 0.00 2.87
586 1527 4.259356 TGAAATGATGAGGTGCAGAAGAG 58.741 43.478 0.00 0.00 0.00 2.85
587 1528 4.019950 TGAAATGATGAGGTGCAGAAGAGA 60.020 41.667 0.00 0.00 0.00 3.10
588 1529 3.823281 ATGATGAGGTGCAGAAGAGAG 57.177 47.619 0.00 0.00 0.00 3.20
589 1530 2.812658 TGATGAGGTGCAGAAGAGAGA 58.187 47.619 0.00 0.00 0.00 3.10
590 1531 3.168292 TGATGAGGTGCAGAAGAGAGAA 58.832 45.455 0.00 0.00 0.00 2.87
591 1532 3.580022 TGATGAGGTGCAGAAGAGAGAAA 59.420 43.478 0.00 0.00 0.00 2.52
592 1533 4.224594 TGATGAGGTGCAGAAGAGAGAAAT 59.775 41.667 0.00 0.00 0.00 2.17
593 1534 4.199432 TGAGGTGCAGAAGAGAGAAATC 57.801 45.455 0.00 0.00 0.00 2.17
594 1535 3.580022 TGAGGTGCAGAAGAGAGAAATCA 59.420 43.478 0.00 0.00 0.00 2.57
595 1536 4.224594 TGAGGTGCAGAAGAGAGAAATCAT 59.775 41.667 0.00 0.00 0.00 2.45
596 1537 5.423290 TGAGGTGCAGAAGAGAGAAATCATA 59.577 40.000 0.00 0.00 0.00 2.15
597 1538 6.070596 TGAGGTGCAGAAGAGAGAAATCATAA 60.071 38.462 0.00 0.00 0.00 1.90
598 1539 6.347696 AGGTGCAGAAGAGAGAAATCATAAG 58.652 40.000 0.00 0.00 0.00 1.73
599 1540 6.155910 AGGTGCAGAAGAGAGAAATCATAAGA 59.844 38.462 0.00 0.00 0.00 2.10
600 1541 6.820656 GGTGCAGAAGAGAGAAATCATAAGAA 59.179 38.462 0.00 0.00 0.00 2.52
601 1542 7.335422 GGTGCAGAAGAGAGAAATCATAAGAAA 59.665 37.037 0.00 0.00 0.00 2.52
602 1543 8.725148 GTGCAGAAGAGAGAAATCATAAGAAAA 58.275 33.333 0.00 0.00 0.00 2.29
603 1544 9.288576 TGCAGAAGAGAGAAATCATAAGAAAAA 57.711 29.630 0.00 0.00 0.00 1.94
604 1545 9.771915 GCAGAAGAGAGAAATCATAAGAAAAAG 57.228 33.333 0.00 0.00 0.00 2.27
618 1559 9.847224 TCATAAGAAAAAGTTTGTCCTCTTAGT 57.153 29.630 1.94 0.00 31.05 2.24
628 1569 9.901172 AAGTTTGTCCTCTTAGTTAAAAGAAGA 57.099 29.630 0.00 0.00 35.14 2.87
629 1570 9.327628 AGTTTGTCCTCTTAGTTAAAAGAAGAC 57.672 33.333 10.05 10.05 43.04 3.01
630 1571 7.941795 TTGTCCTCTTAGTTAAAAGAAGACG 57.058 36.000 11.42 0.00 44.54 4.18
631 1572 7.281040 TGTCCTCTTAGTTAAAAGAAGACGA 57.719 36.000 11.42 3.59 44.54 4.20
632 1573 7.368833 TGTCCTCTTAGTTAAAAGAAGACGAG 58.631 38.462 11.42 0.00 44.54 4.18
633 1574 7.230108 TGTCCTCTTAGTTAAAAGAAGACGAGA 59.770 37.037 11.42 2.72 44.54 4.04
634 1575 7.751793 GTCCTCTTAGTTAAAAGAAGACGAGAG 59.248 40.741 3.89 0.00 37.26 3.20
635 1576 7.664731 TCCTCTTAGTTAAAAGAAGACGAGAGA 59.335 37.037 0.00 0.00 35.14 3.10
636 1577 8.463607 CCTCTTAGTTAAAAGAAGACGAGAGAT 58.536 37.037 0.00 0.00 35.14 2.75
637 1578 9.284594 CTCTTAGTTAAAAGAAGACGAGAGATG 57.715 37.037 0.00 0.00 35.14 2.90
638 1579 9.011095 TCTTAGTTAAAAGAAGACGAGAGATGA 57.989 33.333 0.00 0.00 32.59 2.92
639 1580 9.796120 CTTAGTTAAAAGAAGACGAGAGATGAT 57.204 33.333 0.00 0.00 0.00 2.45
642 1583 9.145865 AGTTAAAAGAAGACGAGAGATGATTTC 57.854 33.333 0.00 0.00 0.00 2.17
643 1584 9.145865 GTTAAAAGAAGACGAGAGATGATTTCT 57.854 33.333 0.00 0.00 37.41 2.52
644 1585 9.712305 TTAAAAGAAGACGAGAGATGATTTCTT 57.288 29.630 0.00 0.00 35.57 2.52
646 1587 8.925161 AAAGAAGACGAGAGATGATTTCTTAG 57.075 34.615 0.00 0.00 33.64 2.18
647 1588 6.503524 AGAAGACGAGAGATGATTTCTTAGC 58.496 40.000 0.00 0.00 33.74 3.09
648 1589 5.843673 AGACGAGAGATGATTTCTTAGCA 57.156 39.130 0.00 0.00 33.74 3.49
649 1590 5.587289 AGACGAGAGATGATTTCTTAGCAC 58.413 41.667 0.00 0.00 33.74 4.40
650 1591 5.126222 AGACGAGAGATGATTTCTTAGCACA 59.874 40.000 0.00 0.00 33.74 4.57
651 1592 5.724328 ACGAGAGATGATTTCTTAGCACAA 58.276 37.500 0.00 0.00 33.74 3.33
652 1593 6.344500 ACGAGAGATGATTTCTTAGCACAAT 58.656 36.000 0.00 0.00 33.74 2.71
653 1594 7.492524 ACGAGAGATGATTTCTTAGCACAATA 58.507 34.615 0.00 0.00 33.74 1.90
654 1595 8.147058 ACGAGAGATGATTTCTTAGCACAATAT 58.853 33.333 0.00 0.00 33.74 1.28
655 1596 8.433893 CGAGAGATGATTTCTTAGCACAATATG 58.566 37.037 0.00 0.00 33.74 1.78
656 1597 9.270640 GAGAGATGATTTCTTAGCACAATATGT 57.729 33.333 0.00 0.00 33.74 2.29
657 1598 9.270640 AGAGATGATTTCTTAGCACAATATGTC 57.729 33.333 0.00 0.00 33.74 3.06
658 1599 9.270640 GAGATGATTTCTTAGCACAATATGTCT 57.729 33.333 0.00 0.00 33.74 3.41
659 1600 9.270640 AGATGATTTCTTAGCACAATATGTCTC 57.729 33.333 0.00 0.00 0.00 3.36
660 1601 8.969260 ATGATTTCTTAGCACAATATGTCTCA 57.031 30.769 0.00 0.00 0.00 3.27
661 1602 8.201554 TGATTTCTTAGCACAATATGTCTCAC 57.798 34.615 0.00 0.00 0.00 3.51
662 1603 6.985188 TTTCTTAGCACAATATGTCTCACC 57.015 37.500 0.00 0.00 0.00 4.02
663 1604 5.675684 TCTTAGCACAATATGTCTCACCA 57.324 39.130 0.00 0.00 0.00 4.17
664 1605 6.239217 TCTTAGCACAATATGTCTCACCAT 57.761 37.500 0.00 0.00 0.00 3.55
665 1606 7.360113 TCTTAGCACAATATGTCTCACCATA 57.640 36.000 0.00 0.00 0.00 2.74
666 1607 7.966812 TCTTAGCACAATATGTCTCACCATAT 58.033 34.615 0.00 0.00 39.20 1.78
667 1608 8.432013 TCTTAGCACAATATGTCTCACCATATT 58.568 33.333 0.00 0.00 44.78 1.28
668 1609 8.978874 TTAGCACAATATGTCTCACCATATTT 57.021 30.769 4.17 0.00 42.54 1.40
669 1610 7.886629 AGCACAATATGTCTCACCATATTTT 57.113 32.000 4.17 0.00 42.54 1.82
670 1611 8.297470 AGCACAATATGTCTCACCATATTTTT 57.703 30.769 4.17 0.00 42.54 1.94
671 1612 9.407380 AGCACAATATGTCTCACCATATTTTTA 57.593 29.630 4.17 0.00 42.54 1.52
672 1613 9.669353 GCACAATATGTCTCACCATATTTTTAG 57.331 33.333 4.17 0.00 42.54 1.85
679 1620 8.677148 TGTCTCACCATATTTTTAGGAATAGC 57.323 34.615 0.00 0.00 0.00 2.97
680 1621 8.494433 TGTCTCACCATATTTTTAGGAATAGCT 58.506 33.333 0.00 0.00 0.00 3.32
681 1622 9.998106 GTCTCACCATATTTTTAGGAATAGCTA 57.002 33.333 0.00 0.00 0.00 3.32
697 1638 9.041354 AGGAATAGCTAGTTATTGAAGATAGGG 57.959 37.037 15.66 0.00 0.00 3.53
698 1639 7.766738 GGAATAGCTAGTTATTGAAGATAGGGC 59.233 40.741 15.66 0.00 0.00 5.19
699 1640 8.442660 AATAGCTAGTTATTGAAGATAGGGCT 57.557 34.615 10.69 0.00 0.00 5.19
700 1641 9.548631 AATAGCTAGTTATTGAAGATAGGGCTA 57.451 33.333 10.69 0.00 33.11 3.93
701 1642 7.857404 AGCTAGTTATTGAAGATAGGGCTAA 57.143 36.000 0.00 0.00 0.00 3.09
702 1643 7.902087 AGCTAGTTATTGAAGATAGGGCTAAG 58.098 38.462 0.00 0.00 0.00 2.18
703 1644 7.730784 AGCTAGTTATTGAAGATAGGGCTAAGA 59.269 37.037 0.00 0.00 0.00 2.10
704 1645 8.032451 GCTAGTTATTGAAGATAGGGCTAAGAG 58.968 40.741 0.00 0.00 0.00 2.85
705 1646 9.303116 CTAGTTATTGAAGATAGGGCTAAGAGA 57.697 37.037 0.00 0.00 0.00 3.10
706 1647 8.734593 AGTTATTGAAGATAGGGCTAAGAGAT 57.265 34.615 0.00 0.00 0.00 2.75
707 1648 8.592809 AGTTATTGAAGATAGGGCTAAGAGATG 58.407 37.037 0.00 0.00 0.00 2.90
708 1649 8.589338 GTTATTGAAGATAGGGCTAAGAGATGA 58.411 37.037 0.00 0.00 0.00 2.92
709 1650 6.412362 TTGAAGATAGGGCTAAGAGATGAC 57.588 41.667 0.00 0.00 0.00 3.06
710 1651 4.835615 TGAAGATAGGGCTAAGAGATGACC 59.164 45.833 0.00 0.00 0.00 4.02
711 1652 3.785364 AGATAGGGCTAAGAGATGACCC 58.215 50.000 0.00 0.00 41.17 4.46
712 1653 3.142977 AGATAGGGCTAAGAGATGACCCA 59.857 47.826 0.00 0.00 43.47 4.51
713 1654 2.503869 AGGGCTAAGAGATGACCCAT 57.496 50.000 0.00 0.00 43.47 4.00
714 1655 2.781667 AGGGCTAAGAGATGACCCATT 58.218 47.619 0.00 0.00 43.47 3.16
715 1656 3.941629 AGGGCTAAGAGATGACCCATTA 58.058 45.455 0.00 0.00 43.47 1.90
716 1657 3.648545 AGGGCTAAGAGATGACCCATTAC 59.351 47.826 0.00 0.00 43.47 1.89
717 1658 3.391296 GGGCTAAGAGATGACCCATTACA 59.609 47.826 0.00 0.00 40.52 2.41
718 1659 4.503991 GGGCTAAGAGATGACCCATTACAG 60.504 50.000 0.00 0.00 40.52 2.74
719 1660 4.345257 GGCTAAGAGATGACCCATTACAGA 59.655 45.833 0.00 0.00 0.00 3.41
720 1661 5.293560 GCTAAGAGATGACCCATTACAGAC 58.706 45.833 0.00 0.00 0.00 3.51
721 1662 5.163405 GCTAAGAGATGACCCATTACAGACA 60.163 44.000 0.00 0.00 0.00 3.41
722 1663 5.965033 AAGAGATGACCCATTACAGACAT 57.035 39.130 0.00 0.00 0.00 3.06
723 1664 7.255977 GCTAAGAGATGACCCATTACAGACATA 60.256 40.741 0.00 0.00 0.00 2.29
724 1665 7.623999 AAGAGATGACCCATTACAGACATAT 57.376 36.000 0.00 0.00 0.00 1.78
725 1666 7.623999 AGAGATGACCCATTACAGACATATT 57.376 36.000 0.00 0.00 0.00 1.28
726 1667 8.038862 AGAGATGACCCATTACAGACATATTT 57.961 34.615 0.00 0.00 0.00 1.40
727 1668 8.497745 AGAGATGACCCATTACAGACATATTTT 58.502 33.333 0.00 0.00 0.00 1.82
728 1669 9.125026 GAGATGACCCATTACAGACATATTTTT 57.875 33.333 0.00 0.00 0.00 1.94
753 1694 9.625747 TTTGTCATATCTAAATTACATGCAGGA 57.374 29.630 4.84 0.00 0.00 3.86
754 1695 9.797642 TTGTCATATCTAAATTACATGCAGGAT 57.202 29.630 4.84 0.00 0.00 3.24
755 1696 9.797642 TGTCATATCTAAATTACATGCAGGATT 57.202 29.630 4.84 0.00 0.00 3.01
770 1711 9.717942 ACATGCAGGATTTAAGATAAGACTATC 57.282 33.333 4.84 0.00 35.10 2.08
771 1712 9.941325 CATGCAGGATTTAAGATAAGACTATCT 57.059 33.333 0.00 0.00 45.21 1.98
789 1730 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
790 1731 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
791 1732 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
792 1733 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
793 1734 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
794 1735 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
795 1736 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
796 1737 4.865905 TCAACCATTGTACATGCCCTAAT 58.134 39.130 0.00 0.00 0.00 1.73
797 1738 6.007485 TCAACCATTGTACATGCCCTAATA 57.993 37.500 0.00 0.00 0.00 0.98
798 1739 6.427441 TCAACCATTGTACATGCCCTAATAA 58.573 36.000 0.00 0.00 0.00 1.40
799 1740 6.320164 TCAACCATTGTACATGCCCTAATAAC 59.680 38.462 0.00 0.00 0.00 1.89
802 1743 4.757019 TTGTACATGCCCTAATAACCGA 57.243 40.909 0.00 0.00 0.00 4.69
809 1750 2.951229 CCCTAATAACCGATGGGCTT 57.049 50.000 0.00 0.00 36.48 4.35
827 1768 5.221303 TGGGCTTGATTTGAACTTTCAGAAG 60.221 40.000 0.00 0.00 38.61 2.85
828 1769 5.010012 GGGCTTGATTTGAACTTTCAGAAGA 59.990 40.000 0.00 0.00 38.61 2.87
878 1820 2.247358 GGAGTGAAAAGGCCCATTTCA 58.753 47.619 23.51 23.51 42.73 2.69
921 1863 3.078891 GGAATTCCTTCCTGAGTTGCT 57.921 47.619 17.73 0.00 46.44 3.91
922 1864 3.425659 GGAATTCCTTCCTGAGTTGCTT 58.574 45.455 17.73 0.00 46.44 3.91
924 1866 4.082517 GGAATTCCTTCCTGAGTTGCTTTC 60.083 45.833 17.73 0.00 46.44 2.62
925 1867 3.576078 TTCCTTCCTGAGTTGCTTTCA 57.424 42.857 0.00 0.00 0.00 2.69
927 1869 1.882623 CCTTCCTGAGTTGCTTTCACC 59.117 52.381 0.00 0.00 0.00 4.02
928 1870 2.575532 CTTCCTGAGTTGCTTTCACCA 58.424 47.619 0.00 0.00 0.00 4.17
929 1871 2.727123 TCCTGAGTTGCTTTCACCAA 57.273 45.000 0.00 0.00 0.00 3.67
930 1872 2.297701 TCCTGAGTTGCTTTCACCAAC 58.702 47.619 0.00 0.00 42.11 3.77
931 1873 1.338020 CCTGAGTTGCTTTCACCAACC 59.662 52.381 0.00 0.00 42.63 3.77
964 1927 2.733956 AGAGTTTGCTTTCACCAACCA 58.266 42.857 0.00 0.00 0.00 3.67
1048 2012 2.826738 AGCTCCTCTCGTCTCGGC 60.827 66.667 0.00 0.00 0.00 5.54
1231 2196 0.179094 GTCTGTCCGGTCAACACACA 60.179 55.000 0.00 0.00 0.00 3.72
1267 2232 0.108329 CACGCCTACCTTTCCGTCAT 60.108 55.000 0.00 0.00 0.00 3.06
1819 2799 3.126831 CCCGATCAGCATAAGACTTCAC 58.873 50.000 0.00 0.00 0.00 3.18
2209 3189 9.838339 ATTACTTGTGAAAATAGGATCTCGATT 57.162 29.630 0.00 0.00 0.00 3.34
2922 3916 5.486526 ACAACTTTGACATTGCCTTTTTCA 58.513 33.333 0.00 0.00 0.00 2.69
3207 4201 1.563924 ATGAGGTAACGCCAGTACCA 58.436 50.000 7.63 0.00 46.39 3.25
3663 4659 6.839124 ATGAATTCATTAGGCACTGAAACA 57.161 33.333 15.36 5.47 41.52 2.83
4047 5043 1.995376 TGGAGAGTAGCGATATGGCA 58.005 50.000 12.54 0.00 34.64 4.92
4101 5097 7.683704 GCAGAGTAATTGCATGATCAAAATCCT 60.684 37.037 0.00 1.08 41.17 3.24
4413 5409 1.676968 CAGTCCATCCCCAACACGA 59.323 57.895 0.00 0.00 0.00 4.35
4689 5686 2.029290 GTGTTCACGTCCTCTGTACCAT 60.029 50.000 0.00 0.00 0.00 3.55
4703 5700 1.479323 GTACCATCCAAGGCGTGACTA 59.521 52.381 0.76 0.00 0.00 2.59
4862 5859 6.426937 GCTCTTTAGTGTATTTGTCTCCACAA 59.573 38.462 0.00 0.00 40.97 3.33
5019 6016 3.054655 GGTAGGGTGTTTGATGGAAGCTA 60.055 47.826 0.00 0.00 0.00 3.32
5082 6091 1.246737 TATGTGTGCCAATGCCGCAA 61.247 50.000 0.00 0.00 38.13 4.85
5097 6106 1.270947 CCGCAACCCTGGTAACACTAA 60.271 52.381 0.00 0.00 46.17 2.24
5184 6193 0.251916 CCATTTGGAGGGTAGTGCGA 59.748 55.000 0.00 0.00 37.39 5.10
5211 6220 9.755804 CATCAGTAGATAACAAGTGATACATGT 57.244 33.333 2.69 2.69 34.70 3.21
5251 6260 1.936547 GTATTCAGCTACTGTGCCTGC 59.063 52.381 0.00 0.00 32.61 4.85
5853 6985 3.003763 GAGGAACAGCCGGGGAGT 61.004 66.667 2.18 0.00 43.43 3.85
6025 7157 0.179094 GGGATTGGTGATGTACGCGA 60.179 55.000 15.93 0.00 0.00 5.87
6065 7198 4.398673 AGAACGACCTAGTCTGATACCAAC 59.601 45.833 0.00 0.00 0.00 3.77
6110 7243 9.373450 AGCTAGAGAATCACAGGATAGAAATAA 57.627 33.333 0.00 0.00 37.82 1.40
6141 7274 1.621814 AGGGATTGACCGAGAACGAAA 59.378 47.619 0.00 0.00 42.66 3.46
6190 7324 9.658799 TCATTAATTCGATAATTTGCCCAAAAA 57.341 25.926 0.00 0.00 36.67 1.94
6210 7344 7.254795 CCAAAAAGCTACAGGGAGTTTATATCG 60.255 40.741 0.00 0.00 0.00 2.92
6343 7477 1.528309 GTTGGTGGGGGTGTGACAG 60.528 63.158 0.00 0.00 0.00 3.51
6494 7628 2.348998 CCTCCGCCAAGCTCAACT 59.651 61.111 0.00 0.00 0.00 3.16
6540 7674 3.441290 CGTCCTCGCCTTCCTCGT 61.441 66.667 0.00 0.00 0.00 4.18
6721 7855 1.207329 GCCCAGTTCCGTTGTAGATCT 59.793 52.381 0.00 0.00 0.00 2.75
7321 8464 2.755655 ACGAGACTACTATGCTGCAGTT 59.244 45.455 16.64 6.05 0.00 3.16
7495 8641 6.124088 ACATTTTCACTCTTTGTGTGAGAC 57.876 37.500 0.00 0.00 46.27 3.36
7502 8648 4.744137 CACTCTTTGTGTGAGACTCAAGAG 59.256 45.833 21.68 21.68 41.53 2.85
7578 8724 5.696724 ACTCGAAGTAATTGTTCTTGAGGTG 59.303 40.000 0.00 0.00 0.00 4.00
7580 8726 5.465390 TCGAAGTAATTGTTCTTGAGGTGTG 59.535 40.000 0.00 0.00 0.00 3.82
7586 8732 8.567948 AGTAATTGTTCTTGAGGTGTGTTTATG 58.432 33.333 0.00 0.00 0.00 1.90
7653 8800 3.877508 GCTCCTGTGTAGTGTTCAGTTTT 59.122 43.478 0.00 0.00 0.00 2.43
7812 8959 3.314913 ACGTTTGATTGTTGCATCTGTGA 59.685 39.130 0.00 0.00 0.00 3.58
7959 9106 9.699410 TGATTAATCAATGAAGGGAAGTTGTAT 57.301 29.630 15.82 0.00 33.08 2.29
8061 9208 6.012658 TCTGTTGAGCAAATGAACAATACC 57.987 37.500 0.00 0.00 0.00 2.73
8161 9308 2.747446 AGTTTCAAGTGAAGTGCGTTGT 59.253 40.909 0.00 0.00 35.21 3.32
8212 9359 1.302511 GCGTGTCCTTGATGGTGGT 60.303 57.895 0.00 0.00 37.07 4.16
8301 9452 2.026641 GAAGCTGCAATAATCCTGCCA 58.973 47.619 1.02 0.00 39.13 4.92
8390 9541 7.764331 TCAGCAACGATGTACTAGTATTGTTA 58.236 34.615 5.75 0.00 31.42 2.41
8409 9560 5.129634 TGTTATGTTTCCAGAGCAAACTCA 58.870 37.500 0.00 0.00 46.09 3.41
8410 9561 5.239306 TGTTATGTTTCCAGAGCAAACTCAG 59.761 40.000 0.00 0.00 46.09 3.35
8413 9564 1.888215 TTCCAGAGCAAACTCAGCAG 58.112 50.000 0.00 0.00 46.09 4.24
8414 9565 0.604780 TCCAGAGCAAACTCAGCAGC 60.605 55.000 0.00 0.00 46.09 5.25
8415 9566 0.887836 CCAGAGCAAACTCAGCAGCA 60.888 55.000 0.00 0.00 46.09 4.41
8416 9567 0.517755 CAGAGCAAACTCAGCAGCAG 59.482 55.000 0.00 0.00 46.09 4.24
8438 9589 6.540189 GCAGAGGTTTATTTAGATCAGCTGAA 59.460 38.462 22.50 3.58 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.961793 TAATTCCGGCAAATCCCTCG 58.038 50.000 0.00 0.00 0.00 4.63
34 35 3.753797 GAGATAATTCCGGCAAATCCCTC 59.246 47.826 0.00 0.00 0.00 4.30
45 46 4.861462 CGGATGATGACAGAGATAATTCCG 59.139 45.833 0.00 0.00 36.79 4.30
84 85 5.305585 ACAGAAATATATGTTGTAGCCCCG 58.694 41.667 0.00 0.00 0.00 5.73
103 105 2.795329 GCCCAAAAAGGAGATGACAGA 58.205 47.619 0.00 0.00 41.22 3.41
106 108 0.811281 CCGCCCAAAAAGGAGATGAC 59.189 55.000 0.00 0.00 41.22 3.06
107 109 0.404040 ACCGCCCAAAAAGGAGATGA 59.596 50.000 0.00 0.00 41.22 2.92
109 111 0.404040 TCACCGCCCAAAAAGGAGAT 59.596 50.000 0.00 0.00 41.22 2.75
115 117 1.611519 CTAACCTCACCGCCCAAAAA 58.388 50.000 0.00 0.00 0.00 1.94
116 118 0.250989 CCTAACCTCACCGCCCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
122 124 1.449778 GGAAGCCTAACCTCACCGC 60.450 63.158 0.00 0.00 0.00 5.68
130 132 1.869767 CGCATGATGAGGAAGCCTAAC 59.130 52.381 0.00 0.00 31.76 2.34
139 141 0.869880 TTCGCGTACGCATGATGAGG 60.870 55.000 36.44 19.37 42.06 3.86
142 144 1.559814 CCTTCGCGTACGCATGATG 59.440 57.895 36.44 25.93 42.06 3.07
154 156 2.202756 ACGAGATTCCGCCTTCGC 60.203 61.111 0.00 0.00 0.00 4.70
155 157 1.153823 ACACGAGATTCCGCCTTCG 60.154 57.895 0.00 0.00 0.00 3.79
156 158 0.108804 TCACACGAGATTCCGCCTTC 60.109 55.000 0.00 0.00 0.00 3.46
157 159 0.108615 CTCACACGAGATTCCGCCTT 60.109 55.000 0.00 0.00 42.34 4.35
158 160 1.513158 CTCACACGAGATTCCGCCT 59.487 57.895 0.00 0.00 42.34 5.52
159 161 1.519455 CCTCACACGAGATTCCGCC 60.519 63.158 0.00 0.00 42.34 6.13
160 162 2.167861 GCCTCACACGAGATTCCGC 61.168 63.158 0.00 0.00 42.34 5.54
161 163 1.874019 CGCCTCACACGAGATTCCG 60.874 63.158 0.00 0.00 42.34 4.30
162 164 2.167861 GCGCCTCACACGAGATTCC 61.168 63.158 0.00 0.00 42.34 3.01
163 165 0.737715 AAGCGCCTCACACGAGATTC 60.738 55.000 2.29 0.00 42.34 2.52
164 166 0.737715 GAAGCGCCTCACACGAGATT 60.738 55.000 2.29 0.00 42.34 2.40
205 207 2.086869 CCTGGATCTGCAATTGTCGTT 58.913 47.619 7.40 0.00 0.00 3.85
207 209 1.019673 CCCTGGATCTGCAATTGTCG 58.980 55.000 7.40 0.00 0.00 4.35
210 212 0.396695 AGCCCCTGGATCTGCAATTG 60.397 55.000 0.00 0.00 0.00 2.32
215 217 0.107643 GAACTAGCCCCTGGATCTGC 59.892 60.000 0.00 0.00 0.00 4.26
216 218 1.799933 AGAACTAGCCCCTGGATCTG 58.200 55.000 0.00 0.00 0.00 2.90
217 219 2.507471 CAAAGAACTAGCCCCTGGATCT 59.493 50.000 0.00 0.00 0.00 2.75
233 236 5.769662 AGTCTTTATGCACATGTTCCAAAGA 59.230 36.000 14.19 14.19 0.00 2.52
237 240 5.048083 GGAAAGTCTTTATGCACATGTTCCA 60.048 40.000 0.00 0.00 32.77 3.53
240 243 4.759693 TCGGAAAGTCTTTATGCACATGTT 59.240 37.500 0.00 0.00 0.00 2.71
242 245 4.944962 TCGGAAAGTCTTTATGCACATG 57.055 40.909 0.00 0.00 0.00 3.21
263 266 5.163301 ACTGCCTGACCTTGTCGATAATAAT 60.163 40.000 0.00 0.00 34.95 1.28
264 267 4.161565 ACTGCCTGACCTTGTCGATAATAA 59.838 41.667 0.00 0.00 34.95 1.40
266 269 2.501723 ACTGCCTGACCTTGTCGATAAT 59.498 45.455 0.00 0.00 34.95 1.28
268 271 1.476891 GACTGCCTGACCTTGTCGATA 59.523 52.381 0.00 0.00 34.95 2.92
272 275 0.972883 AGAGACTGCCTGACCTTGTC 59.027 55.000 0.00 0.00 0.00 3.18
298 301 1.359459 GAATGAGTTGTCGCCGGTCC 61.359 60.000 1.90 0.00 0.00 4.46
302 305 0.924090 GCTAGAATGAGTTGTCGCCG 59.076 55.000 0.00 0.00 0.00 6.46
310 319 3.579709 CACTGTTGTCGCTAGAATGAGT 58.420 45.455 0.00 0.00 0.00 3.41
311 320 2.926200 CCACTGTTGTCGCTAGAATGAG 59.074 50.000 0.00 0.00 0.00 2.90
314 323 2.960819 GACCACTGTTGTCGCTAGAAT 58.039 47.619 0.00 0.00 0.00 2.40
322 331 1.593006 CACAGAACGACCACTGTTGTC 59.407 52.381 2.12 2.12 43.52 3.18
323 332 1.066430 ACACAGAACGACCACTGTTGT 60.066 47.619 0.00 0.00 43.52 3.32
326 335 0.179084 CCACACAGAACGACCACTGT 60.179 55.000 0.00 0.00 46.32 3.55
327 336 0.179084 ACCACACAGAACGACCACTG 60.179 55.000 0.00 0.00 39.65 3.66
343 352 2.525368 TCAAGGTCGATCTCTGAACCA 58.475 47.619 0.00 0.00 0.00 3.67
344 353 3.452474 CATCAAGGTCGATCTCTGAACC 58.548 50.000 0.00 0.00 0.00 3.62
345 354 2.863137 GCATCAAGGTCGATCTCTGAAC 59.137 50.000 0.00 0.00 0.00 3.18
346 355 2.497273 TGCATCAAGGTCGATCTCTGAA 59.503 45.455 0.00 0.00 0.00 3.02
347 356 2.102578 TGCATCAAGGTCGATCTCTGA 58.897 47.619 0.00 5.85 0.00 3.27
348 357 2.591571 TGCATCAAGGTCGATCTCTG 57.408 50.000 0.00 0.00 0.00 3.35
352 361 7.992180 AATAAAAATTGCATCAAGGTCGATC 57.008 32.000 0.00 0.00 0.00 3.69
353 362 8.465999 TGTAATAAAAATTGCATCAAGGTCGAT 58.534 29.630 0.00 0.00 0.00 3.59
358 367 9.991388 CCAAATGTAATAAAAATTGCATCAAGG 57.009 29.630 2.81 2.69 36.16 3.61
359 368 9.991388 CCCAAATGTAATAAAAATTGCATCAAG 57.009 29.630 2.81 0.00 36.16 3.02
360 369 9.730705 TCCCAAATGTAATAAAAATTGCATCAA 57.269 25.926 2.81 0.00 36.16 2.57
361 370 9.730705 TTCCCAAATGTAATAAAAATTGCATCA 57.269 25.926 2.81 0.00 36.16 3.07
378 387 6.589907 GGTACAAATACAAAGCTTCCCAAATG 59.410 38.462 0.00 0.00 32.40 2.32
381 390 4.525100 GGGTACAAATACAAAGCTTCCCAA 59.475 41.667 0.00 0.00 32.40 4.12
382 391 4.083565 GGGTACAAATACAAAGCTTCCCA 58.916 43.478 0.00 0.00 32.40 4.37
386 395 3.504520 CCACGGGTACAAATACAAAGCTT 59.495 43.478 0.00 0.00 32.40 3.74
402 411 7.136289 ACGCATTATAATATTTTACCACGGG 57.864 36.000 0.00 0.00 0.00 5.28
404 413 6.951530 CGGACGCATTATAATATTTTACCACG 59.048 38.462 0.00 0.00 0.00 4.94
406 415 7.160049 TCCGGACGCATTATAATATTTTACCA 58.840 34.615 0.00 0.00 0.00 3.25
412 421 5.047847 CGGATCCGGACGCATTATAATATT 58.952 41.667 26.95 0.00 35.56 1.28
415 424 2.232941 ACGGATCCGGACGCATTATAAT 59.767 45.455 35.87 9.18 44.69 1.28
423 432 1.133869 CAAAAACGGATCCGGACGC 59.866 57.895 35.87 0.86 44.69 5.19
424 433 0.719465 CTCAAAAACGGATCCGGACG 59.281 55.000 35.87 19.61 44.69 4.79
425 434 2.088950 TCTCAAAAACGGATCCGGAC 57.911 50.000 35.87 0.00 44.69 4.79
426 435 2.300723 TCTTCTCAAAAACGGATCCGGA 59.699 45.455 35.87 22.01 44.69 5.14
458 473 9.521841 TCTCTCACTCTCTCTCTAAATAAACAA 57.478 33.333 0.00 0.00 0.00 2.83
459 474 9.173021 CTCTCTCACTCTCTCTCTAAATAAACA 57.827 37.037 0.00 0.00 0.00 2.83
460 475 9.174166 ACTCTCTCACTCTCTCTCTAAATAAAC 57.826 37.037 0.00 0.00 0.00 2.01
463 478 8.084985 TCACTCTCTCACTCTCTCTCTAAATA 57.915 38.462 0.00 0.00 0.00 1.40
464 479 6.957631 TCACTCTCTCACTCTCTCTCTAAAT 58.042 40.000 0.00 0.00 0.00 1.40
468 483 4.579869 GTTCACTCTCTCACTCTCTCTCT 58.420 47.826 0.00 0.00 0.00 3.10
479 494 5.672321 GCCAAATTCATTCGTTCACTCTCTC 60.672 44.000 0.00 0.00 0.00 3.20
480 495 4.154918 GCCAAATTCATTCGTTCACTCTCT 59.845 41.667 0.00 0.00 0.00 3.10
481 496 4.406943 GCCAAATTCATTCGTTCACTCTC 58.593 43.478 0.00 0.00 0.00 3.20
482 497 3.120199 CGCCAAATTCATTCGTTCACTCT 60.120 43.478 0.00 0.00 0.00 3.24
483 498 3.163594 CGCCAAATTCATTCGTTCACTC 58.836 45.455 0.00 0.00 0.00 3.51
484 499 2.095263 CCGCCAAATTCATTCGTTCACT 60.095 45.455 0.00 0.00 0.00 3.41
485 500 2.250188 CCGCCAAATTCATTCGTTCAC 58.750 47.619 0.00 0.00 0.00 3.18
486 501 1.402194 GCCGCCAAATTCATTCGTTCA 60.402 47.619 0.00 0.00 0.00 3.18
487 502 1.268265 GCCGCCAAATTCATTCGTTC 58.732 50.000 0.00 0.00 0.00 3.95
505 1446 2.101917 TGTACATACCCTTAGCTTCCGC 59.898 50.000 0.00 0.00 0.00 5.54
516 1457 9.841295 TCTAAGATAAAACCATTGTACATACCC 57.159 33.333 0.00 0.00 0.00 3.69
546 1487 9.818270 ATCATTTCATCATTTATCCTACATGGT 57.182 29.630 0.00 0.00 37.07 3.55
550 1491 9.511272 CCTCATCATTTCATCATTTATCCTACA 57.489 33.333 0.00 0.00 0.00 2.74
551 1492 9.512588 ACCTCATCATTTCATCATTTATCCTAC 57.487 33.333 0.00 0.00 0.00 3.18
552 1493 9.511272 CACCTCATCATTTCATCATTTATCCTA 57.489 33.333 0.00 0.00 0.00 2.94
553 1494 7.039923 GCACCTCATCATTTCATCATTTATCCT 60.040 37.037 0.00 0.00 0.00 3.24
554 1495 7.088905 GCACCTCATCATTTCATCATTTATCC 58.911 38.462 0.00 0.00 0.00 2.59
555 1496 7.654568 TGCACCTCATCATTTCATCATTTATC 58.345 34.615 0.00 0.00 0.00 1.75
556 1497 7.504574 TCTGCACCTCATCATTTCATCATTTAT 59.495 33.333 0.00 0.00 0.00 1.40
557 1498 6.829811 TCTGCACCTCATCATTTCATCATTTA 59.170 34.615 0.00 0.00 0.00 1.40
558 1499 5.655090 TCTGCACCTCATCATTTCATCATTT 59.345 36.000 0.00 0.00 0.00 2.32
559 1500 5.198207 TCTGCACCTCATCATTTCATCATT 58.802 37.500 0.00 0.00 0.00 2.57
560 1501 4.788679 TCTGCACCTCATCATTTCATCAT 58.211 39.130 0.00 0.00 0.00 2.45
561 1502 4.224991 TCTGCACCTCATCATTTCATCA 57.775 40.909 0.00 0.00 0.00 3.07
562 1503 4.880120 TCTTCTGCACCTCATCATTTCATC 59.120 41.667 0.00 0.00 0.00 2.92
563 1504 4.851843 TCTTCTGCACCTCATCATTTCAT 58.148 39.130 0.00 0.00 0.00 2.57
564 1505 4.019950 TCTCTTCTGCACCTCATCATTTCA 60.020 41.667 0.00 0.00 0.00 2.69
565 1506 4.511527 TCTCTTCTGCACCTCATCATTTC 58.488 43.478 0.00 0.00 0.00 2.17
566 1507 4.224594 TCTCTCTTCTGCACCTCATCATTT 59.775 41.667 0.00 0.00 0.00 2.32
567 1508 3.773667 TCTCTCTTCTGCACCTCATCATT 59.226 43.478 0.00 0.00 0.00 2.57
568 1509 3.372897 TCTCTCTTCTGCACCTCATCAT 58.627 45.455 0.00 0.00 0.00 2.45
569 1510 2.812658 TCTCTCTTCTGCACCTCATCA 58.187 47.619 0.00 0.00 0.00 3.07
570 1511 3.883830 TTCTCTCTTCTGCACCTCATC 57.116 47.619 0.00 0.00 0.00 2.92
571 1512 4.224594 TGATTTCTCTCTTCTGCACCTCAT 59.775 41.667 0.00 0.00 0.00 2.90
572 1513 3.580022 TGATTTCTCTCTTCTGCACCTCA 59.420 43.478 0.00 0.00 0.00 3.86
573 1514 4.199432 TGATTTCTCTCTTCTGCACCTC 57.801 45.455 0.00 0.00 0.00 3.85
574 1515 4.840716 ATGATTTCTCTCTTCTGCACCT 57.159 40.909 0.00 0.00 0.00 4.00
575 1516 6.344500 TCTTATGATTTCTCTCTTCTGCACC 58.656 40.000 0.00 0.00 0.00 5.01
576 1517 7.840342 TTCTTATGATTTCTCTCTTCTGCAC 57.160 36.000 0.00 0.00 0.00 4.57
577 1518 8.853077 TTTTCTTATGATTTCTCTCTTCTGCA 57.147 30.769 0.00 0.00 0.00 4.41
578 1519 9.771915 CTTTTTCTTATGATTTCTCTCTTCTGC 57.228 33.333 0.00 0.00 0.00 4.26
592 1533 9.847224 ACTAAGAGGACAAACTTTTTCTTATGA 57.153 29.630 0.00 0.00 0.00 2.15
602 1543 9.901172 TCTTCTTTTAACTAAGAGGACAAACTT 57.099 29.630 0.00 0.00 35.92 2.66
609 1550 7.664731 TCTCTCGTCTTCTTTTAACTAAGAGGA 59.335 37.037 12.09 12.09 40.12 3.71
610 1551 7.818642 TCTCTCGTCTTCTTTTAACTAAGAGG 58.181 38.462 0.00 0.00 35.69 3.69
611 1552 9.284594 CATCTCTCGTCTTCTTTTAACTAAGAG 57.715 37.037 0.00 0.00 35.69 2.85
612 1553 9.011095 TCATCTCTCGTCTTCTTTTAACTAAGA 57.989 33.333 0.00 0.00 32.50 2.10
613 1554 9.796120 ATCATCTCTCGTCTTCTTTTAACTAAG 57.204 33.333 0.00 0.00 0.00 2.18
616 1557 9.145865 GAAATCATCTCTCGTCTTCTTTTAACT 57.854 33.333 0.00 0.00 0.00 2.24
617 1558 9.145865 AGAAATCATCTCTCGTCTTCTTTTAAC 57.854 33.333 0.00 0.00 30.46 2.01
618 1559 9.712305 AAGAAATCATCTCTCGTCTTCTTTTAA 57.288 29.630 0.00 0.00 37.42 1.52
620 1561 9.364989 CTAAGAAATCATCTCTCGTCTTCTTTT 57.635 33.333 0.00 0.00 37.42 2.27
621 1562 7.491048 GCTAAGAAATCATCTCTCGTCTTCTTT 59.509 37.037 0.00 0.00 37.42 2.52
622 1563 6.978080 GCTAAGAAATCATCTCTCGTCTTCTT 59.022 38.462 0.00 0.00 37.42 2.52
623 1564 6.096141 TGCTAAGAAATCATCTCTCGTCTTCT 59.904 38.462 0.00 0.00 37.42 2.85
624 1565 6.198216 GTGCTAAGAAATCATCTCTCGTCTTC 59.802 42.308 0.00 0.00 37.42 2.87
625 1566 6.039616 GTGCTAAGAAATCATCTCTCGTCTT 58.960 40.000 0.00 0.00 37.42 3.01
626 1567 5.126222 TGTGCTAAGAAATCATCTCTCGTCT 59.874 40.000 0.00 0.00 37.42 4.18
627 1568 5.344066 TGTGCTAAGAAATCATCTCTCGTC 58.656 41.667 0.00 0.00 37.42 4.20
628 1569 5.330455 TGTGCTAAGAAATCATCTCTCGT 57.670 39.130 0.00 0.00 37.42 4.18
629 1570 6.841443 ATTGTGCTAAGAAATCATCTCTCG 57.159 37.500 0.00 0.00 37.42 4.04
630 1571 9.270640 ACATATTGTGCTAAGAAATCATCTCTC 57.729 33.333 0.00 0.00 37.42 3.20
631 1572 9.270640 GACATATTGTGCTAAGAAATCATCTCT 57.729 33.333 0.00 0.00 37.42 3.10
632 1573 9.270640 AGACATATTGTGCTAAGAAATCATCTC 57.729 33.333 0.00 0.00 37.42 2.75
633 1574 9.270640 GAGACATATTGTGCTAAGAAATCATCT 57.729 33.333 0.00 0.00 41.32 2.90
634 1575 9.049523 TGAGACATATTGTGCTAAGAAATCATC 57.950 33.333 0.00 0.00 0.00 2.92
635 1576 8.834465 GTGAGACATATTGTGCTAAGAAATCAT 58.166 33.333 0.00 0.00 0.00 2.45
636 1577 7.280876 GGTGAGACATATTGTGCTAAGAAATCA 59.719 37.037 0.00 0.00 0.00 2.57
637 1578 7.280876 TGGTGAGACATATTGTGCTAAGAAATC 59.719 37.037 0.00 0.00 0.00 2.17
638 1579 7.112122 TGGTGAGACATATTGTGCTAAGAAAT 58.888 34.615 0.00 0.00 0.00 2.17
639 1580 6.472016 TGGTGAGACATATTGTGCTAAGAAA 58.528 36.000 0.00 0.00 0.00 2.52
640 1581 6.048732 TGGTGAGACATATTGTGCTAAGAA 57.951 37.500 0.00 0.00 0.00 2.52
641 1582 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
642 1583 8.613060 AATATGGTGAGACATATTGTGCTAAG 57.387 34.615 9.82 0.00 46.68 2.18
653 1594 9.289782 GCTATTCCTAAAAATATGGTGAGACAT 57.710 33.333 0.00 0.00 34.90 3.06
654 1595 8.494433 AGCTATTCCTAAAAATATGGTGAGACA 58.506 33.333 0.00 0.00 0.00 3.41
655 1596 8.910351 AGCTATTCCTAAAAATATGGTGAGAC 57.090 34.615 0.00 0.00 0.00 3.36
671 1612 9.041354 CCCTATCTTCAATAACTAGCTATTCCT 57.959 37.037 0.00 0.00 0.00 3.36
672 1613 7.766738 GCCCTATCTTCAATAACTAGCTATTCC 59.233 40.741 0.00 0.00 0.00 3.01
673 1614 8.536175 AGCCCTATCTTCAATAACTAGCTATTC 58.464 37.037 0.00 0.00 0.00 1.75
674 1615 8.442660 AGCCCTATCTTCAATAACTAGCTATT 57.557 34.615 0.00 0.00 0.00 1.73
675 1616 9.548631 TTAGCCCTATCTTCAATAACTAGCTAT 57.451 33.333 0.00 0.00 0.00 2.97
676 1617 8.951614 TTAGCCCTATCTTCAATAACTAGCTA 57.048 34.615 0.00 0.00 0.00 3.32
677 1618 7.730784 TCTTAGCCCTATCTTCAATAACTAGCT 59.269 37.037 0.00 0.00 0.00 3.32
678 1619 7.897864 TCTTAGCCCTATCTTCAATAACTAGC 58.102 38.462 0.00 0.00 0.00 3.42
679 1620 9.303116 TCTCTTAGCCCTATCTTCAATAACTAG 57.697 37.037 0.00 0.00 0.00 2.57
680 1621 9.830186 ATCTCTTAGCCCTATCTTCAATAACTA 57.170 33.333 0.00 0.00 0.00 2.24
681 1622 8.592809 CATCTCTTAGCCCTATCTTCAATAACT 58.407 37.037 0.00 0.00 0.00 2.24
682 1623 8.589338 TCATCTCTTAGCCCTATCTTCAATAAC 58.411 37.037 0.00 0.00 0.00 1.89
683 1624 8.589338 GTCATCTCTTAGCCCTATCTTCAATAA 58.411 37.037 0.00 0.00 0.00 1.40
684 1625 7.179338 GGTCATCTCTTAGCCCTATCTTCAATA 59.821 40.741 0.00 0.00 0.00 1.90
685 1626 6.013812 GGTCATCTCTTAGCCCTATCTTCAAT 60.014 42.308 0.00 0.00 0.00 2.57
686 1627 5.305644 GGTCATCTCTTAGCCCTATCTTCAA 59.694 44.000 0.00 0.00 0.00 2.69
687 1628 4.835615 GGTCATCTCTTAGCCCTATCTTCA 59.164 45.833 0.00 0.00 0.00 3.02
688 1629 4.221924 GGGTCATCTCTTAGCCCTATCTTC 59.778 50.000 0.00 0.00 36.49 2.87
689 1630 4.164204 GGGTCATCTCTTAGCCCTATCTT 58.836 47.826 0.00 0.00 36.49 2.40
690 1631 3.142977 TGGGTCATCTCTTAGCCCTATCT 59.857 47.826 0.00 0.00 39.97 1.98
691 1632 3.511477 TGGGTCATCTCTTAGCCCTATC 58.489 50.000 0.00 0.00 39.97 2.08
692 1633 3.637821 TGGGTCATCTCTTAGCCCTAT 57.362 47.619 0.00 0.00 39.97 2.57
693 1634 3.637821 ATGGGTCATCTCTTAGCCCTA 57.362 47.619 0.00 0.00 39.97 3.53
694 1635 2.503869 ATGGGTCATCTCTTAGCCCT 57.496 50.000 0.00 0.00 39.97 5.19
695 1636 3.391296 TGTAATGGGTCATCTCTTAGCCC 59.609 47.826 0.00 0.00 39.73 5.19
696 1637 4.345257 TCTGTAATGGGTCATCTCTTAGCC 59.655 45.833 0.00 0.00 0.00 3.93
697 1638 5.163405 TGTCTGTAATGGGTCATCTCTTAGC 60.163 44.000 0.00 0.00 0.00 3.09
698 1639 6.471233 TGTCTGTAATGGGTCATCTCTTAG 57.529 41.667 0.00 0.00 0.00 2.18
699 1640 8.727100 ATATGTCTGTAATGGGTCATCTCTTA 57.273 34.615 0.00 0.00 0.00 2.10
700 1641 5.965033 ATGTCTGTAATGGGTCATCTCTT 57.035 39.130 0.00 0.00 0.00 2.85
701 1642 7.623999 AATATGTCTGTAATGGGTCATCTCT 57.376 36.000 0.00 0.00 0.00 3.10
702 1643 8.682936 AAAATATGTCTGTAATGGGTCATCTC 57.317 34.615 0.00 0.00 0.00 2.75
727 1668 9.625747 TCCTGCATGTAATTTAGATATGACAAA 57.374 29.630 0.00 0.00 0.00 2.83
728 1669 9.797642 ATCCTGCATGTAATTTAGATATGACAA 57.202 29.630 0.00 0.00 0.00 3.18
729 1670 9.797642 AATCCTGCATGTAATTTAGATATGACA 57.202 29.630 0.00 0.00 0.00 3.58
744 1685 9.717942 GATAGTCTTATCTTAAATCCTGCATGT 57.282 33.333 0.00 0.00 34.16 3.21
745 1686 9.941325 AGATAGTCTTATCTTAAATCCTGCATG 57.059 33.333 0.00 0.00 42.67 4.06
763 1704 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
764 1705 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
765 1706 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
766 1707 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
767 1708 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
768 1709 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
769 1710 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
770 1711 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
771 1712 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
772 1713 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
773 1714 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
774 1715 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
775 1716 6.460953 GGTTATTAGGGCATGTACAATGGTTG 60.461 42.308 0.00 0.00 0.00 3.77
776 1717 5.596772 GGTTATTAGGGCATGTACAATGGTT 59.403 40.000 0.00 0.00 0.00 3.67
777 1718 5.137551 GGTTATTAGGGCATGTACAATGGT 58.862 41.667 0.00 0.00 0.00 3.55
778 1719 4.215399 CGGTTATTAGGGCATGTACAATGG 59.785 45.833 0.00 0.00 0.00 3.16
779 1720 5.060506 TCGGTTATTAGGGCATGTACAATG 58.939 41.667 0.00 0.12 0.00 2.82
780 1721 5.298989 TCGGTTATTAGGGCATGTACAAT 57.701 39.130 0.00 0.00 0.00 2.71
781 1722 4.757019 TCGGTTATTAGGGCATGTACAA 57.243 40.909 0.00 0.00 0.00 2.41
782 1723 4.504165 CCATCGGTTATTAGGGCATGTACA 60.504 45.833 0.00 0.00 0.00 2.90
783 1724 4.000988 CCATCGGTTATTAGGGCATGTAC 58.999 47.826 0.00 0.00 0.00 2.90
784 1725 3.008594 CCCATCGGTTATTAGGGCATGTA 59.991 47.826 0.00 0.00 31.81 2.29
785 1726 2.224769 CCCATCGGTTATTAGGGCATGT 60.225 50.000 0.00 0.00 31.81 3.21
786 1727 2.436417 CCCATCGGTTATTAGGGCATG 58.564 52.381 0.00 0.00 31.81 4.06
787 1728 2.879103 CCCATCGGTTATTAGGGCAT 57.121 50.000 0.00 0.00 31.81 4.40
790 1731 2.105821 TCAAGCCCATCGGTTATTAGGG 59.894 50.000 0.00 0.00 42.55 3.53
791 1732 3.485463 TCAAGCCCATCGGTTATTAGG 57.515 47.619 0.00 0.00 0.00 2.69
792 1733 5.530915 TCAAATCAAGCCCATCGGTTATTAG 59.469 40.000 0.00 0.00 0.00 1.73
793 1734 5.441500 TCAAATCAAGCCCATCGGTTATTA 58.558 37.500 0.00 0.00 0.00 0.98
794 1735 4.277476 TCAAATCAAGCCCATCGGTTATT 58.723 39.130 0.00 0.00 0.00 1.40
795 1736 3.897239 TCAAATCAAGCCCATCGGTTAT 58.103 40.909 0.00 0.00 0.00 1.89
796 1737 3.358111 TCAAATCAAGCCCATCGGTTA 57.642 42.857 0.00 0.00 0.00 2.85
797 1738 2.214376 TCAAATCAAGCCCATCGGTT 57.786 45.000 0.00 0.00 0.00 4.44
798 1739 1.818674 GTTCAAATCAAGCCCATCGGT 59.181 47.619 0.00 0.00 0.00 4.69
799 1740 2.094675 AGTTCAAATCAAGCCCATCGG 58.905 47.619 0.00 0.00 0.00 4.18
802 1743 4.834496 TCTGAAAGTTCAAATCAAGCCCAT 59.166 37.500 0.00 0.00 36.64 4.00
835 1776 0.453282 CGCTCCAAATGAGTGCAACG 60.453 55.000 0.00 0.00 44.12 4.10
841 1782 0.035152 TCCATGCGCTCCAAATGAGT 60.035 50.000 9.73 0.00 43.48 3.41
919 1861 1.408969 TTTGAGGGGTTGGTGAAAGC 58.591 50.000 0.00 0.00 35.44 3.51
951 1914 1.006922 GCTGCTGGTTGGTGAAAGC 60.007 57.895 0.00 0.00 36.78 3.51
952 1915 0.595095 GAGCTGCTGGTTGGTGAAAG 59.405 55.000 7.01 0.00 0.00 2.62
953 1916 1.165907 CGAGCTGCTGGTTGGTGAAA 61.166 55.000 7.01 0.00 0.00 2.69
955 1918 2.031012 CGAGCTGCTGGTTGGTGA 59.969 61.111 7.01 0.00 0.00 4.02
956 1919 1.447317 AAACGAGCTGCTGGTTGGTG 61.447 55.000 26.87 2.69 33.03 4.17
957 1920 1.152963 AAACGAGCTGCTGGTTGGT 60.153 52.632 26.87 12.46 33.03 3.67
958 1921 1.576421 GAAACGAGCTGCTGGTTGG 59.424 57.895 26.87 5.44 33.03 3.77
960 1923 1.600916 GGGAAACGAGCTGCTGGTT 60.601 57.895 21.99 21.99 34.06 3.67
962 1925 2.747855 GGGGAAACGAGCTGCTGG 60.748 66.667 7.01 8.90 0.00 4.85
964 1927 2.032681 GTGGGGAAACGAGCTGCT 59.967 61.111 0.00 0.00 0.00 4.24
1048 2012 1.144057 GCTAGGGACATCACACGGG 59.856 63.158 0.00 0.00 0.00 5.28
1231 2196 1.704070 GTGCGTTGGTTTTGTGTTGT 58.296 45.000 0.00 0.00 0.00 3.32
1267 2232 3.625897 CAGACACGGCTGGGACCA 61.626 66.667 0.00 0.00 32.26 4.02
1521 2496 1.620819 AGCTCCAGACACACTACAAGG 59.379 52.381 0.00 0.00 0.00 3.61
1819 2799 1.856802 GCTCAAAGCACAAAACAGGG 58.143 50.000 0.00 0.00 41.89 4.45
2922 3916 5.138276 TCAACACCTCACTACTGAACTACT 58.862 41.667 0.00 0.00 0.00 2.57
3207 4201 0.108138 GACGCCATGGCTAACACTCT 60.108 55.000 33.07 6.00 39.32 3.24
3640 4636 6.839124 TGTTTCAGTGCCTAATGAATTCAT 57.161 33.333 15.36 15.36 40.19 2.57
3663 4659 1.846007 TTAACAAATGCTCCGGCCAT 58.154 45.000 2.24 0.00 37.74 4.40
3792 4788 9.856488 GGGAGGTACTAAATTTTTCTCAAAATC 57.144 33.333 0.00 0.00 39.42 2.17
4047 5043 4.080129 AGATGCACCACCTGTGAATTCTAT 60.080 41.667 7.05 0.00 43.75 1.98
4101 5097 3.759618 CCAAAAACCTTACCGCCTCATAA 59.240 43.478 0.00 0.00 0.00 1.90
4413 5409 1.668419 GACTTGGGCGCTTATGATGT 58.332 50.000 7.64 0.00 0.00 3.06
4689 5686 1.337823 GCTTTCTAGTCACGCCTTGGA 60.338 52.381 0.00 0.00 0.00 3.53
4862 5859 1.247567 CCAATGGCCTCTGTTTTCGT 58.752 50.000 3.32 0.00 0.00 3.85
5019 6016 1.699656 CGTCCTCGTACACGACCGAT 61.700 60.000 0.00 0.00 44.22 4.18
5082 6091 1.982958 CCCAGTTAGTGTTACCAGGGT 59.017 52.381 0.00 0.00 30.64 4.34
5097 6106 4.202419 TGCAGTCAAATTACACTACCCAGT 60.202 41.667 0.00 0.00 34.42 4.00
5112 6121 3.333414 GCTTCGTGCTGCAGTCAA 58.667 55.556 16.64 0.00 38.95 3.18
5184 6193 9.755804 CATGTATCACTTGTTATCTACTGATGT 57.244 33.333 0.00 0.00 34.32 3.06
5211 6220 9.621629 TGAATACAAGAGGTCTTTTGAAAACTA 57.378 29.630 8.02 0.00 33.11 2.24
5251 6260 1.664016 CGTTGCTGCAACTTAGGCAAG 60.664 52.381 34.44 17.95 43.76 4.01
5853 6985 4.742201 GGAGGTCAAGCGAGCGCA 62.742 66.667 17.68 0.00 44.60 6.09
6025 7157 1.006571 CTACTCCACACAACGGCGT 60.007 57.895 6.77 6.77 0.00 5.68
6065 7198 0.538584 TGCTGCTAGGGACATCACAG 59.461 55.000 0.00 0.00 0.00 3.66
6110 7243 3.556843 CGGTCAATCCCTTTGCCATTTTT 60.557 43.478 0.00 0.00 35.16 1.94
6190 7324 5.009811 GTGTCGATATAAACTCCCTGTAGCT 59.990 44.000 0.00 0.00 0.00 3.32
6721 7855 2.730934 ACTGTAGGCTGGAGACGATA 57.269 50.000 0.00 0.00 0.00 2.92
7495 8641 4.556942 TGTGTTGCATGTTTCTCTTGAG 57.443 40.909 0.00 0.00 0.00 3.02
7653 8800 6.319152 TCAGTCAAAGGTAATTCGTTCCAAAA 59.681 34.615 0.00 0.00 0.00 2.44
8161 9308 1.185618 ACAACAGTAGCCGGCTCAGA 61.186 55.000 36.73 14.16 0.00 3.27
8212 9359 2.401017 CGATCTCTTCGTTATCCGCA 57.599 50.000 0.00 0.00 43.01 5.69
8278 9425 2.941480 CAGGATTATTGCAGCTTCCCT 58.059 47.619 0.00 0.00 0.00 4.20
8301 9452 1.067846 CATGTGCTGCTGAGTTTGCAT 60.068 47.619 0.00 0.00 39.86 3.96
8390 9541 2.555757 GCTGAGTTTGCTCTGGAAACAT 59.444 45.455 14.95 3.02 42.13 2.71
8409 9560 5.994250 TGATCTAAATAAACCTCTGCTGCT 58.006 37.500 0.00 0.00 0.00 4.24
8410 9561 5.277731 GCTGATCTAAATAAACCTCTGCTGC 60.278 44.000 0.00 0.00 0.00 5.25
8413 9564 6.051717 TCAGCTGATCTAAATAAACCTCTGC 58.948 40.000 13.74 0.00 0.00 4.26
8414 9565 7.984050 TCTTCAGCTGATCTAAATAAACCTCTG 59.016 37.037 19.04 0.00 0.00 3.35
8415 9566 8.083828 TCTTCAGCTGATCTAAATAAACCTCT 57.916 34.615 19.04 0.00 0.00 3.69
8416 9567 7.440856 CCTCTTCAGCTGATCTAAATAAACCTC 59.559 40.741 19.04 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.