Multiple sequence alignment - TraesCS7A01G199900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G199900 chr7A 100.000 7311 0 0 1 7311 162538669 162531359 0.000000e+00 13501.0
1 TraesCS7A01G199900 chr7A 83.656 1187 156 22 4677 5839 162582596 162581424 0.000000e+00 1083.0
2 TraesCS7A01G199900 chr7A 86.380 837 103 9 2875 3704 162584387 162583555 0.000000e+00 904.0
3 TraesCS7A01G199900 chr7A 74.752 1715 329 65 4678 6326 162593160 162591484 0.000000e+00 673.0
4 TraesCS7A01G199900 chr7A 81.165 807 137 12 2890 3694 162594491 162593698 1.030000e-177 634.0
5 TraesCS7A01G199900 chr7A 81.462 766 94 30 5855 6582 162581364 162580609 1.060000e-162 584.0
6 TraesCS7A01G199900 chr7A 81.471 340 49 12 3727 4063 162583462 162583134 4.350000e-67 267.0
7 TraesCS7A01G199900 chr7A 93.204 103 4 3 2783 2885 274661108 274661009 1.640000e-31 148.0
8 TraesCS7A01G199900 chr7B 96.237 3109 70 7 4238 7308 123441887 123438788 0.000000e+00 5049.0
9 TraesCS7A01G199900 chr7B 98.413 1197 14 3 2872 4063 123443663 123442467 0.000000e+00 2100.0
10 TraesCS7A01G199900 chr7B 93.328 1319 47 15 1486 2791 123444951 123443661 0.000000e+00 1910.0
11 TraesCS7A01G199900 chr7B 84.148 1186 153 21 4678 5839 123660294 123659120 0.000000e+00 1116.0
12 TraesCS7A01G199900 chr7B 86.659 817 82 15 2895 3704 123662054 123661258 0.000000e+00 880.0
13 TraesCS7A01G199900 chr7B 93.976 498 29 1 859 1355 123445523 123445026 0.000000e+00 752.0
14 TraesCS7A01G199900 chr7B 81.289 807 136 13 2890 3694 123670186 123669393 2.220000e-179 640.0
15 TraesCS7A01G199900 chr7B 80.574 767 99 32 5855 6582 123659060 123658305 4.990000e-151 545.0
16 TraesCS7A01G199900 chr7B 87.273 440 46 7 257 695 123481540 123481110 1.830000e-135 494.0
17 TraesCS7A01G199900 chr7B 85.533 394 42 11 6925 7309 651201748 651202135 1.480000e-106 398.0
18 TraesCS7A01G199900 chr7B 95.604 182 8 0 4061 4242 123442322 123442141 7.170000e-75 292.0
19 TraesCS7A01G199900 chr7B 84.122 296 40 7 3770 4062 123661141 123660850 5.590000e-71 279.0
20 TraesCS7A01G199900 chr7B 94.737 95 4 1 2787 2880 414314451 414314545 5.910000e-31 147.0
21 TraesCS7A01G199900 chr7B 87.719 57 6 1 822 877 623567476 623567420 1.700000e-06 65.8
22 TraesCS7A01G199900 chr7D 96.108 2852 60 13 4061 6871 161294216 161291375 0.000000e+00 4604.0
23 TraesCS7A01G199900 chr7D 98.322 1192 20 0 2872 4063 161295835 161294644 0.000000e+00 2091.0
24 TraesCS7A01G199900 chr7D 94.712 1286 46 6 1521 2791 161297111 161295833 0.000000e+00 1978.0
25 TraesCS7A01G199900 chr7D 87.192 1218 110 20 168 1355 161298528 161297327 0.000000e+00 1343.0
26 TraesCS7A01G199900 chr7D 85.055 1191 134 27 4678 5839 161395372 161394197 0.000000e+00 1173.0
27 TraesCS7A01G199900 chr7D 87.393 817 91 9 2895 3704 161397147 161396336 0.000000e+00 928.0
28 TraesCS7A01G199900 chr7D 75.396 1703 325 60 4677 6326 161403167 161401506 0.000000e+00 737.0
29 TraesCS7A01G199900 chr7D 81.414 764 97 26 5855 6582 161394137 161393383 3.800000e-162 582.0
30 TraesCS7A01G199900 chr7D 85.787 394 40 12 6925 7309 611317482 611317868 3.180000e-108 403.0
31 TraesCS7A01G199900 chr7D 81.971 416 68 6 2873 3282 161404602 161404188 5.430000e-91 346.0
32 TraesCS7A01G199900 chr5A 86.735 392 33 16 6928 7309 619491000 619490618 1.130000e-112 418.0
33 TraesCS7A01G199900 chr5A 92.157 102 7 1 2782 2882 639210575 639210474 7.650000e-30 143.0
34 TraesCS7A01G199900 chr5A 90.196 51 5 0 822 872 654619413 654619463 4.730000e-07 67.6
35 TraesCS7A01G199900 chr1D 86.445 391 38 11 6928 7309 101569546 101569162 1.470000e-111 414.0
36 TraesCS7A01G199900 chr1D 92.000 50 4 0 822 871 473967772 473967723 3.660000e-08 71.3
37 TraesCS7A01G199900 chr3A 86.445 391 35 15 6928 7309 630040489 630040870 5.280000e-111 412.0
38 TraesCS7A01G199900 chr6D 86.898 374 38 7 6928 7290 262748292 262748665 6.830000e-110 409.0
39 TraesCS7A01G199900 chr6D 91.837 49 4 0 823 871 24825523 24825475 1.320000e-07 69.4
40 TraesCS7A01G199900 chr1A 86.614 381 38 9 6928 7298 63873447 63873824 6.830000e-110 409.0
41 TraesCS7A01G199900 chr1A 97.727 88 2 0 2790 2877 488101154 488101067 1.270000e-32 152.0
42 TraesCS7A01G199900 chr1A 93.069 101 6 1 2782 2882 395484920 395485019 5.910000e-31 147.0
43 TraesCS7A01G199900 chr6A 85.641 390 39 13 6928 7309 127090467 127090087 1.910000e-105 394.0
44 TraesCS7A01G199900 chr2D 95.146 103 3 2 2781 2883 558071198 558071098 2.110000e-35 161.0
45 TraesCS7A01G199900 chr3B 94.737 95 5 0 2783 2877 15111115 15111021 1.640000e-31 148.0
46 TraesCS7A01G199900 chr1B 93.069 101 7 0 2781 2881 150541500 150541600 1.640000e-31 148.0
47 TraesCS7A01G199900 chr1B 94.681 94 5 0 2782 2875 447815356 447815449 5.910000e-31 147.0
48 TraesCS7A01G199900 chr5D 93.750 48 3 0 822 869 3595497 3595450 1.020000e-08 73.1
49 TraesCS7A01G199900 chr2B 89.655 58 4 2 822 878 675337192 675337136 1.020000e-08 73.1
50 TraesCS7A01G199900 chrUn 95.455 44 2 0 822 865 110687446 110687489 3.660000e-08 71.3
51 TraesCS7A01G199900 chr2A 90.566 53 3 2 822 874 16552974 16552924 1.320000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G199900 chr7A 162531359 162538669 7310 True 13501.000000 13501 100.000000 1 7311 1 chr7A.!!$R1 7310
1 TraesCS7A01G199900 chr7A 162580609 162584387 3778 True 709.500000 1083 83.242250 2875 6582 4 chr7A.!!$R3 3707
2 TraesCS7A01G199900 chr7A 162591484 162594491 3007 True 653.500000 673 77.958500 2890 6326 2 chr7A.!!$R4 3436
3 TraesCS7A01G199900 chr7B 123438788 123445523 6735 True 2020.600000 5049 95.511600 859 7308 5 chr7B.!!$R4 6449
4 TraesCS7A01G199900 chr7B 123658305 123662054 3749 True 705.000000 1116 83.875750 2895 6582 4 chr7B.!!$R5 3687
5 TraesCS7A01G199900 chr7B 123669393 123670186 793 True 640.000000 640 81.289000 2890 3694 1 chr7B.!!$R2 804
6 TraesCS7A01G199900 chr7D 161291375 161298528 7153 True 2504.000000 4604 94.083500 168 6871 4 chr7D.!!$R1 6703
7 TraesCS7A01G199900 chr7D 161393383 161397147 3764 True 894.333333 1173 84.620667 2895 6582 3 chr7D.!!$R2 3687
8 TraesCS7A01G199900 chr7D 161401506 161404602 3096 True 541.500000 737 78.683500 2873 6326 2 chr7D.!!$R3 3453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.107831 GATGGTTATGGCGGTGGCTA 59.892 55.000 0.00 0.00 39.81 3.93 F
698 700 0.110486 GCACCAAGGAAGAAGACCCA 59.890 55.000 0.00 0.00 0.00 4.51 F
989 1019 0.179111 TTCGGACTGATCCATGCGAC 60.179 55.000 9.03 0.00 46.67 5.19 F
1361 1396 0.239879 TCTTCCGCAAATTTCACCGC 59.760 50.000 0.00 0.00 0.00 5.68 F
1368 1403 0.247185 CAAATTTCACCGCCATGGCT 59.753 50.000 33.07 14.30 43.94 4.75 F
1370 1405 0.323725 AATTTCACCGCCATGGCTCT 60.324 50.000 33.07 15.85 43.94 4.09 F
1377 1412 0.393537 CCGCCATGGCTCTTTCTCTT 60.394 55.000 33.07 0.00 39.32 2.85 F
1396 1431 0.602638 TCAGTCCATGTGTGGTTCGC 60.603 55.000 0.00 0.00 46.16 4.70 F
1403 1438 0.603707 ATGTGTGGTTCGCACTGGAG 60.604 55.000 11.97 0.00 44.14 3.86 F
1847 1988 0.673985 CAATCCGACCTCTATCGCCA 59.326 55.000 0.00 0.00 40.87 5.69 F
1856 1997 1.067776 CCTCTATCGCCATCCGGTAAC 60.068 57.143 0.00 0.00 37.59 2.50 F
4154 4962 1.278985 TCTACAGTGACCCATTGCCTG 59.721 52.381 0.00 0.00 0.00 4.85 F
5192 6312 0.912487 TGGGCGGTCTCCTTTGGTAT 60.912 55.000 0.00 0.00 0.00 2.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1843 1984 0.179056 AGGAATGTTACCGGATGGCG 60.179 55.000 9.46 0.0 39.70 5.69 R
1891 2032 3.888323 TGCTGCAGTTCAAGTTCCAATTA 59.112 39.130 16.64 0.0 0.00 1.40 R
2811 2967 3.963428 AGTGGTGATCTAAACGCTCTT 57.037 42.857 0.00 0.0 0.00 2.85 R
3143 3303 4.130118 CTGCAAACTCCCTATCCATGTAC 58.870 47.826 0.00 0.0 0.00 2.90 R
3482 3659 0.317854 GTTGCCGAGCCTTTCACAAC 60.318 55.000 0.00 0.0 36.17 3.32 R
3767 4018 5.104374 ACAGTGTTTGTGAAATCTGCAAAG 58.896 37.500 0.00 0.0 38.99 2.77 R
3816 4067 2.294233 TGCTGAACATCCTTTGAACAGC 59.706 45.455 0.00 0.0 46.73 4.40 R
4154 4962 1.075536 AGGACCCACTGACCAAATTCC 59.924 52.381 0.00 0.0 0.00 3.01 R
4443 5510 9.008965 TGGTGCCAAATACATGTGATATATAAC 57.991 33.333 9.11 0.0 0.00 1.89 R
4615 5685 2.896685 CCTGCACCCATTAACTTGGAAA 59.103 45.455 0.00 0.0 39.25 3.13 R
5192 6312 6.263842 CCAGATAGCAAATCCTTAGCAATTCA 59.736 38.462 0.00 0.0 0.00 2.57 R
5545 6711 0.478072 TTCAGCTTGGCTCCTTTGGA 59.522 50.000 0.00 0.0 36.40 3.53 R
6788 8051 1.174712 GCAGCCTGAAGAACAAGCCA 61.175 55.000 0.00 0.0 36.69 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.986004 ACTTATAAGTCTTACAATGCCGC 57.014 39.130 12.50 0.00 32.86 6.53
24 25 5.671493 ACTTATAAGTCTTACAATGCCGCT 58.329 37.500 12.50 0.00 32.86 5.52
25 26 6.812998 ACTTATAAGTCTTACAATGCCGCTA 58.187 36.000 12.50 0.00 32.86 4.26
26 27 7.270047 ACTTATAAGTCTTACAATGCCGCTAA 58.730 34.615 12.50 0.00 32.86 3.09
27 28 7.931948 ACTTATAAGTCTTACAATGCCGCTAAT 59.068 33.333 12.50 0.00 32.86 1.73
28 29 6.787085 ATAAGTCTTACAATGCCGCTAATC 57.213 37.500 0.00 0.00 0.00 1.75
29 30 3.123804 AGTCTTACAATGCCGCTAATCG 58.876 45.455 0.00 0.00 38.08 3.34
30 31 2.864343 GTCTTACAATGCCGCTAATCGT 59.136 45.455 0.00 0.00 36.19 3.73
31 32 2.863740 TCTTACAATGCCGCTAATCGTG 59.136 45.455 0.00 0.00 36.19 4.35
32 33 2.588027 TACAATGCCGCTAATCGTGA 57.412 45.000 0.00 0.00 36.19 4.35
33 34 1.953559 ACAATGCCGCTAATCGTGAT 58.046 45.000 0.00 0.00 36.19 3.06
34 35 1.599071 ACAATGCCGCTAATCGTGATG 59.401 47.619 0.00 0.00 36.19 3.07
35 36 1.599071 CAATGCCGCTAATCGTGATGT 59.401 47.619 0.00 0.00 36.19 3.06
36 37 2.799978 CAATGCCGCTAATCGTGATGTA 59.200 45.455 0.00 0.00 36.19 2.29
37 38 2.812358 TGCCGCTAATCGTGATGTAT 57.188 45.000 0.00 0.00 36.19 2.29
38 39 2.672714 TGCCGCTAATCGTGATGTATC 58.327 47.619 0.00 0.00 36.19 2.24
39 40 1.993370 GCCGCTAATCGTGATGTATCC 59.007 52.381 0.00 0.00 36.19 2.59
40 41 2.352814 GCCGCTAATCGTGATGTATCCT 60.353 50.000 0.00 0.00 36.19 3.24
41 42 3.861131 GCCGCTAATCGTGATGTATCCTT 60.861 47.826 0.00 0.00 36.19 3.36
42 43 3.675225 CCGCTAATCGTGATGTATCCTTG 59.325 47.826 0.00 0.00 36.19 3.61
43 44 4.546570 CGCTAATCGTGATGTATCCTTGA 58.453 43.478 0.00 0.00 0.00 3.02
44 45 5.164233 CGCTAATCGTGATGTATCCTTGAT 58.836 41.667 0.00 0.00 0.00 2.57
45 46 5.635280 CGCTAATCGTGATGTATCCTTGATT 59.365 40.000 7.80 7.80 0.00 2.57
46 47 6.806739 CGCTAATCGTGATGTATCCTTGATTA 59.193 38.462 0.00 0.00 0.00 1.75
47 48 7.201359 CGCTAATCGTGATGTATCCTTGATTAC 60.201 40.741 0.00 0.00 0.00 1.89
48 49 7.598869 GCTAATCGTGATGTATCCTTGATTACA 59.401 37.037 0.00 0.00 0.00 2.41
49 50 9.476202 CTAATCGTGATGTATCCTTGATTACAA 57.524 33.333 0.00 0.00 34.65 2.41
72 73 9.896645 ACAAGTGTTATACTGATGAAGATGAAT 57.103 29.630 0.00 0.00 40.26 2.57
74 75 8.375608 AGTGTTATACTGATGAAGATGAATGC 57.624 34.615 0.00 0.00 38.49 3.56
75 76 8.209584 AGTGTTATACTGATGAAGATGAATGCT 58.790 33.333 0.00 0.00 38.49 3.79
76 77 9.481340 GTGTTATACTGATGAAGATGAATGCTA 57.519 33.333 0.00 0.00 0.00 3.49
81 82 7.674471 ACTGATGAAGATGAATGCTATGATG 57.326 36.000 0.00 0.00 0.00 3.07
82 83 7.450903 ACTGATGAAGATGAATGCTATGATGA 58.549 34.615 0.00 0.00 0.00 2.92
83 84 8.103935 ACTGATGAAGATGAATGCTATGATGAT 58.896 33.333 0.00 0.00 0.00 2.45
84 85 8.268850 TGATGAAGATGAATGCTATGATGATG 57.731 34.615 0.00 0.00 0.00 3.07
85 86 7.336931 TGATGAAGATGAATGCTATGATGATGG 59.663 37.037 0.00 0.00 0.00 3.51
86 87 6.775708 TGAAGATGAATGCTATGATGATGGA 58.224 36.000 0.00 0.00 0.00 3.41
87 88 6.879458 TGAAGATGAATGCTATGATGATGGAG 59.121 38.462 0.00 0.00 0.00 3.86
88 89 6.622427 AGATGAATGCTATGATGATGGAGA 57.378 37.500 0.00 0.00 0.00 3.71
89 90 7.201702 AGATGAATGCTATGATGATGGAGAT 57.798 36.000 0.00 0.00 0.00 2.75
90 91 7.051000 AGATGAATGCTATGATGATGGAGATG 58.949 38.462 0.00 0.00 0.00 2.90
91 92 5.497474 TGAATGCTATGATGATGGAGATGG 58.503 41.667 0.00 0.00 0.00 3.51
92 93 5.013808 TGAATGCTATGATGATGGAGATGGT 59.986 40.000 0.00 0.00 0.00 3.55
93 94 4.987963 TGCTATGATGATGGAGATGGTT 57.012 40.909 0.00 0.00 0.00 3.67
94 95 6.631763 ATGCTATGATGATGGAGATGGTTA 57.368 37.500 0.00 0.00 0.00 2.85
95 96 6.631763 TGCTATGATGATGGAGATGGTTAT 57.368 37.500 0.00 0.00 0.00 1.89
96 97 6.412214 TGCTATGATGATGGAGATGGTTATG 58.588 40.000 0.00 0.00 0.00 1.90
97 98 5.821470 GCTATGATGATGGAGATGGTTATGG 59.179 44.000 0.00 0.00 0.00 2.74
98 99 4.025040 TGATGATGGAGATGGTTATGGC 57.975 45.455 0.00 0.00 0.00 4.40
99 100 2.549064 TGATGGAGATGGTTATGGCG 57.451 50.000 0.00 0.00 0.00 5.69
100 101 1.072173 TGATGGAGATGGTTATGGCGG 59.928 52.381 0.00 0.00 0.00 6.13
101 102 1.072331 GATGGAGATGGTTATGGCGGT 59.928 52.381 0.00 0.00 0.00 5.68
102 103 0.180171 TGGAGATGGTTATGGCGGTG 59.820 55.000 0.00 0.00 0.00 4.94
103 104 0.535102 GGAGATGGTTATGGCGGTGG 60.535 60.000 0.00 0.00 0.00 4.61
104 105 1.152963 AGATGGTTATGGCGGTGGC 60.153 57.895 0.00 0.00 38.90 5.01
105 106 1.152963 GATGGTTATGGCGGTGGCT 60.153 57.895 0.00 0.00 39.81 4.75
106 107 0.107831 GATGGTTATGGCGGTGGCTA 59.892 55.000 0.00 0.00 39.81 3.93
107 108 0.179029 ATGGTTATGGCGGTGGCTAC 60.179 55.000 0.00 0.00 39.81 3.58
108 109 1.268992 TGGTTATGGCGGTGGCTACT 61.269 55.000 0.00 0.00 39.81 2.57
109 110 0.754472 GGTTATGGCGGTGGCTACTA 59.246 55.000 0.00 0.00 39.81 1.82
110 111 1.346722 GGTTATGGCGGTGGCTACTAT 59.653 52.381 0.00 0.00 39.81 2.12
111 112 2.564062 GGTTATGGCGGTGGCTACTATA 59.436 50.000 0.00 0.00 39.81 1.31
112 113 3.368116 GGTTATGGCGGTGGCTACTATAG 60.368 52.174 0.00 0.00 39.81 1.31
113 114 2.304221 ATGGCGGTGGCTACTATAGA 57.696 50.000 6.78 0.00 39.81 1.98
114 115 2.304221 TGGCGGTGGCTACTATAGAT 57.696 50.000 6.78 0.00 39.81 1.98
115 116 1.893137 TGGCGGTGGCTACTATAGATG 59.107 52.381 6.78 0.00 39.81 2.90
116 117 1.204941 GGCGGTGGCTACTATAGATGG 59.795 57.143 6.78 0.00 39.81 3.51
117 118 1.204941 GCGGTGGCTACTATAGATGGG 59.795 57.143 6.78 0.00 35.83 4.00
118 119 2.803956 CGGTGGCTACTATAGATGGGA 58.196 52.381 6.78 0.00 0.00 4.37
119 120 3.162666 CGGTGGCTACTATAGATGGGAA 58.837 50.000 6.78 0.00 0.00 3.97
120 121 3.769844 CGGTGGCTACTATAGATGGGAAT 59.230 47.826 6.78 0.00 0.00 3.01
121 122 4.382040 CGGTGGCTACTATAGATGGGAATG 60.382 50.000 6.78 0.00 0.00 2.67
122 123 4.080863 GGTGGCTACTATAGATGGGAATGG 60.081 50.000 6.78 0.00 0.00 3.16
123 124 4.532521 GTGGCTACTATAGATGGGAATGGT 59.467 45.833 6.78 0.00 0.00 3.55
124 125 4.532126 TGGCTACTATAGATGGGAATGGTG 59.468 45.833 6.78 0.00 0.00 4.17
125 126 4.777896 GGCTACTATAGATGGGAATGGTGA 59.222 45.833 6.78 0.00 0.00 4.02
126 127 5.337652 GGCTACTATAGATGGGAATGGTGAC 60.338 48.000 6.78 0.00 0.00 3.67
139 140 3.421567 GGTGACAACCTGAAGGCTT 57.578 52.632 0.00 0.00 43.84 4.35
140 141 1.692411 GGTGACAACCTGAAGGCTTT 58.308 50.000 0.00 0.00 43.84 3.51
141 142 2.031870 GGTGACAACCTGAAGGCTTTT 58.968 47.619 0.00 0.00 43.84 2.27
142 143 2.223805 GGTGACAACCTGAAGGCTTTTG 60.224 50.000 0.00 4.43 43.84 2.44
143 144 2.687935 GTGACAACCTGAAGGCTTTTGA 59.312 45.455 14.52 0.00 39.32 2.69
144 145 3.319122 GTGACAACCTGAAGGCTTTTGAT 59.681 43.478 14.52 1.66 39.32 2.57
145 146 4.518970 GTGACAACCTGAAGGCTTTTGATA 59.481 41.667 14.52 2.57 39.32 2.15
146 147 5.009610 GTGACAACCTGAAGGCTTTTGATAA 59.990 40.000 14.52 0.00 39.32 1.75
147 148 5.596361 TGACAACCTGAAGGCTTTTGATAAA 59.404 36.000 14.52 0.00 39.32 1.40
148 149 6.267471 TGACAACCTGAAGGCTTTTGATAAAT 59.733 34.615 14.52 0.00 39.32 1.40
149 150 6.458210 ACAACCTGAAGGCTTTTGATAAATG 58.542 36.000 14.52 4.61 39.32 2.32
150 151 6.041979 ACAACCTGAAGGCTTTTGATAAATGT 59.958 34.615 14.52 5.13 39.32 2.71
151 152 6.670695 ACCTGAAGGCTTTTGATAAATGTT 57.329 33.333 0.00 0.00 39.32 2.71
152 153 7.775053 ACCTGAAGGCTTTTGATAAATGTTA 57.225 32.000 0.00 0.00 39.32 2.41
153 154 8.366359 ACCTGAAGGCTTTTGATAAATGTTAT 57.634 30.769 0.00 0.00 39.32 1.89
154 155 8.470002 ACCTGAAGGCTTTTGATAAATGTTATC 58.530 33.333 0.00 1.76 39.32 1.75
155 156 8.689972 CCTGAAGGCTTTTGATAAATGTTATCT 58.310 33.333 0.00 0.00 0.00 1.98
156 157 9.512435 CTGAAGGCTTTTGATAAATGTTATCTG 57.488 33.333 0.00 0.59 0.00 2.90
157 158 9.241919 TGAAGGCTTTTGATAAATGTTATCTGA 57.758 29.630 0.00 0.00 0.00 3.27
160 161 9.193806 AGGCTTTTGATAAATGTTATCTGATGT 57.806 29.630 0.00 0.00 0.00 3.06
161 162 9.241317 GGCTTTTGATAAATGTTATCTGATGTG 57.759 33.333 0.00 0.00 0.00 3.21
162 163 9.241317 GCTTTTGATAAATGTTATCTGATGTGG 57.759 33.333 0.00 0.00 0.00 4.17
166 167 9.685276 TTGATAAATGTTATCTGATGTGGTTCT 57.315 29.630 0.00 0.00 0.00 3.01
180 181 2.061848 TGGTTCTCTCCCCACAAATGA 58.938 47.619 0.00 0.00 0.00 2.57
188 189 1.422024 TCCCCACAAATGACGAAAGGA 59.578 47.619 0.00 0.00 0.00 3.36
190 191 3.264706 TCCCCACAAATGACGAAAGGATA 59.735 43.478 0.00 0.00 0.00 2.59
192 193 4.275936 CCCCACAAATGACGAAAGGATATC 59.724 45.833 0.00 0.00 0.00 1.63
196 198 6.201806 CCACAAATGACGAAAGGATATCTCTC 59.798 42.308 2.05 0.00 0.00 3.20
211 213 7.344352 AGGATATCTCTCCTTTATAGCATGGAC 59.656 40.741 2.05 0.00 43.33 4.02
214 216 5.458595 TCTCTCCTTTATAGCATGGACAGA 58.541 41.667 0.00 0.00 0.00 3.41
228 230 6.435277 AGCATGGACAGATGAAATAGTGTTTT 59.565 34.615 0.00 0.00 0.00 2.43
231 233 5.476599 TGGACAGATGAAATAGTGTTTTGGG 59.523 40.000 0.00 0.00 0.00 4.12
235 237 6.777580 ACAGATGAAATAGTGTTTTGGGTCTT 59.222 34.615 0.00 0.00 0.00 3.01
240 242 4.993705 ATAGTGTTTTGGGTCTTCTCCA 57.006 40.909 0.00 0.00 0.00 3.86
252 254 4.336713 GGGTCTTCTCCAATGTGAATTAGC 59.663 45.833 0.00 0.00 0.00 3.09
369 371 5.893897 AGGCAAATCAAAGTGATTCTCTC 57.106 39.130 4.05 0.00 45.57 3.20
430 432 7.418337 AAAAATGAGTGAAAACCCACTAACT 57.582 32.000 0.00 0.00 46.45 2.24
437 439 6.002082 AGTGAAAACCCACTAACTAATGACC 58.998 40.000 0.00 0.00 44.82 4.02
438 440 4.998672 TGAAAACCCACTAACTAATGACCG 59.001 41.667 0.00 0.00 0.00 4.79
439 441 2.685850 ACCCACTAACTAATGACCGC 57.314 50.000 0.00 0.00 0.00 5.68
441 443 1.567504 CCACTAACTAATGACCGCCG 58.432 55.000 0.00 0.00 0.00 6.46
456 458 2.760477 CCGGAATGGACAACCCCA 59.240 61.111 0.00 0.00 42.00 4.96
463 465 3.979497 GGACAACCCCACCCCTGG 61.979 72.222 0.00 0.00 37.29 4.45
480 482 3.670377 GCCACCCTTGTCAACGCC 61.670 66.667 0.00 0.00 0.00 5.68
482 484 3.353836 CACCCTTGTCAACGCCGG 61.354 66.667 0.00 0.00 0.00 6.13
483 485 3.552384 ACCCTTGTCAACGCCGGA 61.552 61.111 5.05 0.00 0.00 5.14
484 486 2.742372 CCCTTGTCAACGCCGGAG 60.742 66.667 5.05 3.72 0.00 4.63
485 487 2.342279 CCTTGTCAACGCCGGAGA 59.658 61.111 13.83 0.00 0.00 3.71
487 489 2.027625 CTTGTCAACGCCGGAGACC 61.028 63.158 13.83 0.00 0.00 3.85
488 490 2.436087 CTTGTCAACGCCGGAGACCT 62.436 60.000 13.83 0.00 0.00 3.85
489 491 1.180456 TTGTCAACGCCGGAGACCTA 61.180 55.000 13.83 0.00 0.00 3.08
490 492 1.180456 TGTCAACGCCGGAGACCTAA 61.180 55.000 13.83 0.00 0.00 2.69
545 547 2.974698 GTGACGCCAGTGCAAGCT 60.975 61.111 0.00 0.00 37.32 3.74
548 550 2.203195 ACGCCAGTGCAAGCTCAA 60.203 55.556 0.00 0.00 37.32 3.02
553 555 1.241165 CCAGTGCAAGCTCAACATCA 58.759 50.000 0.00 0.00 0.00 3.07
567 569 3.954258 TCAACATCAAGAGCTCCTCGATA 59.046 43.478 10.93 0.00 35.36 2.92
568 570 4.586421 TCAACATCAAGAGCTCCTCGATAT 59.414 41.667 10.93 0.00 35.36 1.63
569 571 5.770162 TCAACATCAAGAGCTCCTCGATATA 59.230 40.000 10.93 0.00 35.36 0.86
570 572 6.435591 TCAACATCAAGAGCTCCTCGATATAT 59.564 38.462 10.93 0.00 35.36 0.86
571 573 6.206395 ACATCAAGAGCTCCTCGATATATG 57.794 41.667 10.93 6.05 35.36 1.78
572 574 5.714333 ACATCAAGAGCTCCTCGATATATGT 59.286 40.000 10.93 6.65 35.36 2.29
586 588 4.686091 CGATATATGTCGATGCTGGTTGTT 59.314 41.667 16.00 0.00 44.06 2.83
590 592 0.593128 GTCGATGCTGGTTGTTGCTT 59.407 50.000 0.00 0.00 0.00 3.91
599 601 2.975248 TTGTTGCTTGCGCCGCTA 60.975 55.556 11.67 0.48 34.43 4.26
637 639 4.778143 GCCCTGACGACCGGCAAT 62.778 66.667 0.00 0.00 42.52 3.56
638 640 2.511600 CCCTGACGACCGGCAATC 60.512 66.667 0.00 0.00 29.81 2.67
639 641 2.264480 CCTGACGACCGGCAATCA 59.736 61.111 0.00 0.94 29.81 2.57
644 646 2.892425 CGACCGGCAATCAGGAGC 60.892 66.667 0.00 0.00 0.00 4.70
645 647 2.268920 GACCGGCAATCAGGAGCA 59.731 61.111 0.00 0.00 0.00 4.26
647 649 2.270205 CCGGCAATCAGGAGCACT 59.730 61.111 0.00 0.00 0.00 4.40
655 657 3.599584 CAGGAGCACTGGCATTGG 58.400 61.111 6.98 0.00 43.70 3.16
675 677 3.936203 AAGGCGGCGGACAAGTCA 61.936 61.111 9.78 0.00 0.00 3.41
683 685 1.374758 CGGACAAGTCAGAGGCACC 60.375 63.158 2.29 0.00 0.00 5.01
684 686 1.754745 GGACAAGTCAGAGGCACCA 59.245 57.895 2.29 0.00 0.00 4.17
695 697 1.349357 AGAGGCACCAAGGAAGAAGAC 59.651 52.381 0.00 0.00 0.00 3.01
696 698 0.402121 AGGCACCAAGGAAGAAGACC 59.598 55.000 0.00 0.00 0.00 3.85
697 699 0.609406 GGCACCAAGGAAGAAGACCC 60.609 60.000 0.00 0.00 0.00 4.46
698 700 0.110486 GCACCAAGGAAGAAGACCCA 59.890 55.000 0.00 0.00 0.00 4.51
700 702 1.068121 ACCAAGGAAGAAGACCCAGG 58.932 55.000 0.00 0.00 0.00 4.45
702 704 0.322906 CAAGGAAGAAGACCCAGGCC 60.323 60.000 0.00 0.00 0.00 5.19
704 706 2.231380 GGAAGAAGACCCAGGCCCA 61.231 63.158 0.00 0.00 0.00 5.36
736 762 1.664649 CGCTGACGCTTTCCACTCA 60.665 57.895 0.00 0.00 0.00 3.41
738 764 0.723981 GCTGACGCTTTCCACTCATC 59.276 55.000 0.00 0.00 0.00 2.92
739 765 1.941209 GCTGACGCTTTCCACTCATCA 60.941 52.381 0.00 0.00 0.00 3.07
750 776 4.574674 TCCACTCATCATAAGGCAAACT 57.425 40.909 0.00 0.00 0.00 2.66
755 781 4.012374 CTCATCATAAGGCAAACTGTGGT 58.988 43.478 0.00 0.00 0.00 4.16
777 803 9.353999 GTGGTTTATACAATAAAAAGGCAGAAG 57.646 33.333 0.00 0.00 0.00 2.85
791 817 2.089980 GCAGAAGAATGCATCACACCT 58.910 47.619 0.00 0.00 45.77 4.00
793 819 3.057033 GCAGAAGAATGCATCACACCTTT 60.057 43.478 0.00 0.00 45.77 3.11
828 857 9.226345 CTTGTCTTAAAGAGAAAATGTGTCAAC 57.774 33.333 0.00 0.00 35.79 3.18
831 860 9.010366 GTCTTAAAGAGAAAATGTGTCAACAAC 57.990 33.333 0.00 0.00 36.54 3.32
833 862 5.560966 AAGAGAAAATGTGTCAACAACGT 57.439 34.783 0.00 0.00 40.46 3.99
842 871 9.959749 AAAATGTGTCAACAACGTTCTTATATT 57.040 25.926 0.00 0.00 40.46 1.28
846 875 8.661257 TGTGTCAACAACGTTCTTATATTATGG 58.339 33.333 0.00 0.00 31.82 2.74
849 878 8.333186 GTCAACAACGTTCTTATATTATGGGAC 58.667 37.037 0.00 0.00 0.00 4.46
857 886 5.657446 TCTTATATTATGGGACGGAGGGAA 58.343 41.667 0.00 0.00 0.00 3.97
865 894 2.026636 TGGGACGGAGGGAATAGTTTTG 60.027 50.000 0.00 0.00 0.00 2.44
867 896 3.007635 GGACGGAGGGAATAGTTTTGTG 58.992 50.000 0.00 0.00 0.00 3.33
872 901 4.517453 CGGAGGGAATAGTTTTGTGTTTGA 59.483 41.667 0.00 0.00 0.00 2.69
895 924 5.401550 ACACATGCATTCCTATGTTTTTCG 58.598 37.500 0.00 0.00 35.46 3.46
900 929 5.218885 TGCATTCCTATGTTTTTCGTGTTG 58.781 37.500 0.00 0.00 34.12 3.33
986 1016 1.143305 CGATTCGGACTGATCCATGC 58.857 55.000 0.00 0.00 46.67 4.06
987 1017 1.143305 GATTCGGACTGATCCATGCG 58.857 55.000 1.41 1.41 46.67 4.73
988 1018 0.752658 ATTCGGACTGATCCATGCGA 59.247 50.000 5.92 5.92 46.67 5.10
989 1019 0.179111 TTCGGACTGATCCATGCGAC 60.179 55.000 9.03 0.00 46.67 5.19
990 1020 1.141665 CGGACTGATCCATGCGACA 59.858 57.895 1.59 0.00 46.67 4.35
991 1021 0.460109 CGGACTGATCCATGCGACAA 60.460 55.000 1.59 0.00 46.67 3.18
1017 1052 1.197721 CCGATGTTCACAGAAACTGGC 59.802 52.381 0.00 0.00 35.51 4.85
1074 1109 0.247460 CACTCACTGGCATTCGGAGA 59.753 55.000 10.51 0.00 0.00 3.71
1108 1143 1.683365 CAAATGGGGAGGTGGCTGG 60.683 63.158 0.00 0.00 0.00 4.85
1285 1320 4.028490 GCCACATCGTCCACCCCA 62.028 66.667 0.00 0.00 0.00 4.96
1355 1390 2.171003 CCCTTCCTCTTCCGCAAATTT 58.829 47.619 0.00 0.00 0.00 1.82
1356 1391 2.164422 CCCTTCCTCTTCCGCAAATTTC 59.836 50.000 0.00 0.00 0.00 2.17
1357 1392 2.819608 CCTTCCTCTTCCGCAAATTTCA 59.180 45.455 0.00 0.00 0.00 2.69
1359 1394 2.159382 TCCTCTTCCGCAAATTTCACC 58.841 47.619 0.00 0.00 0.00 4.02
1360 1395 1.135689 CCTCTTCCGCAAATTTCACCG 60.136 52.381 0.00 0.00 0.00 4.94
1361 1396 0.239879 TCTTCCGCAAATTTCACCGC 59.760 50.000 0.00 0.00 0.00 5.68
1362 1397 0.732538 CTTCCGCAAATTTCACCGCC 60.733 55.000 0.00 0.00 0.00 6.13
1363 1398 1.456196 TTCCGCAAATTTCACCGCCA 61.456 50.000 0.00 0.00 0.00 5.69
1364 1399 1.215117 CCGCAAATTTCACCGCCAT 59.785 52.632 0.00 0.00 0.00 4.40
1365 1400 1.077645 CCGCAAATTTCACCGCCATG 61.078 55.000 0.00 0.00 0.00 3.66
1366 1401 1.077645 CGCAAATTTCACCGCCATGG 61.078 55.000 7.63 7.63 46.41 3.66
1367 1402 1.360931 GCAAATTTCACCGCCATGGC 61.361 55.000 27.67 27.67 43.94 4.40
1368 1403 0.247185 CAAATTTCACCGCCATGGCT 59.753 50.000 33.07 14.30 43.94 4.75
1369 1404 0.532115 AAATTTCACCGCCATGGCTC 59.468 50.000 33.07 7.26 43.94 4.70
1370 1405 0.323725 AATTTCACCGCCATGGCTCT 60.324 50.000 33.07 15.85 43.94 4.09
1371 1406 0.323725 ATTTCACCGCCATGGCTCTT 60.324 50.000 33.07 15.05 43.94 2.85
1372 1407 0.539438 TTTCACCGCCATGGCTCTTT 60.539 50.000 33.07 12.45 43.94 2.52
1373 1408 0.960364 TTCACCGCCATGGCTCTTTC 60.960 55.000 33.07 4.87 43.94 2.62
1374 1409 1.377725 CACCGCCATGGCTCTTTCT 60.378 57.895 33.07 6.98 43.94 2.52
1375 1410 1.078143 ACCGCCATGGCTCTTTCTC 60.078 57.895 33.07 3.30 43.94 2.87
1376 1411 1.222936 CCGCCATGGCTCTTTCTCT 59.777 57.895 33.07 0.00 39.32 3.10
1377 1412 0.393537 CCGCCATGGCTCTTTCTCTT 60.394 55.000 33.07 0.00 39.32 2.85
1378 1413 1.012841 CGCCATGGCTCTTTCTCTTC 58.987 55.000 33.07 1.19 39.32 2.87
1379 1414 1.676916 CGCCATGGCTCTTTCTCTTCA 60.677 52.381 33.07 0.00 39.32 3.02
1380 1415 2.015587 GCCATGGCTCTTTCTCTTCAG 58.984 52.381 29.98 0.00 38.26 3.02
1381 1416 2.617532 GCCATGGCTCTTTCTCTTCAGT 60.618 50.000 29.98 0.00 38.26 3.41
1382 1417 3.269178 CCATGGCTCTTTCTCTTCAGTC 58.731 50.000 0.00 0.00 0.00 3.51
1383 1418 3.269178 CATGGCTCTTTCTCTTCAGTCC 58.731 50.000 0.00 0.00 0.00 3.85
1384 1419 2.329267 TGGCTCTTTCTCTTCAGTCCA 58.671 47.619 0.00 0.00 0.00 4.02
1385 1420 2.909006 TGGCTCTTTCTCTTCAGTCCAT 59.091 45.455 0.00 0.00 0.00 3.41
1386 1421 3.269178 GGCTCTTTCTCTTCAGTCCATG 58.731 50.000 0.00 0.00 0.00 3.66
1387 1422 3.307339 GGCTCTTTCTCTTCAGTCCATGT 60.307 47.826 0.00 0.00 0.00 3.21
1388 1423 3.683822 GCTCTTTCTCTTCAGTCCATGTG 59.316 47.826 0.00 0.00 0.00 3.21
1389 1424 4.802248 GCTCTTTCTCTTCAGTCCATGTGT 60.802 45.833 0.00 0.00 0.00 3.72
1390 1425 4.635223 TCTTTCTCTTCAGTCCATGTGTG 58.365 43.478 0.00 0.00 0.00 3.82
1392 1427 2.329267 TCTCTTCAGTCCATGTGTGGT 58.671 47.619 0.00 0.00 46.16 4.16
1393 1428 2.705658 TCTCTTCAGTCCATGTGTGGTT 59.294 45.455 0.00 0.00 46.16 3.67
1394 1429 3.070018 CTCTTCAGTCCATGTGTGGTTC 58.930 50.000 0.00 0.00 46.16 3.62
1395 1430 1.800586 CTTCAGTCCATGTGTGGTTCG 59.199 52.381 0.00 0.00 46.16 3.95
1396 1431 0.602638 TCAGTCCATGTGTGGTTCGC 60.603 55.000 0.00 0.00 46.16 4.70
1397 1432 0.884259 CAGTCCATGTGTGGTTCGCA 60.884 55.000 0.00 0.00 46.16 5.10
1398 1433 0.884704 AGTCCATGTGTGGTTCGCAC 60.885 55.000 4.82 4.82 46.16 5.34
1399 1434 0.884704 GTCCATGTGTGGTTCGCACT 60.885 55.000 11.97 0.00 46.16 4.40
1400 1435 0.884259 TCCATGTGTGGTTCGCACTG 60.884 55.000 11.97 8.04 46.16 3.66
1401 1436 1.575922 CATGTGTGGTTCGCACTGG 59.424 57.895 11.97 2.11 44.14 4.00
1402 1437 0.884259 CATGTGTGGTTCGCACTGGA 60.884 55.000 11.97 0.00 44.14 3.86
1403 1438 0.603707 ATGTGTGGTTCGCACTGGAG 60.604 55.000 11.97 0.00 44.14 3.86
1404 1439 1.227556 GTGTGGTTCGCACTGGAGT 60.228 57.895 4.56 0.00 41.09 3.85
1408 1443 2.224426 TGTGGTTCGCACTGGAGTATTT 60.224 45.455 0.00 0.00 0.00 1.40
1412 1447 3.071479 GTTCGCACTGGAGTATTTGGAA 58.929 45.455 0.00 0.00 0.00 3.53
1417 1452 4.261405 CGCACTGGAGTATTTGGAAAACAA 60.261 41.667 0.00 0.00 37.28 2.83
1429 1464 6.857777 TTTGGAAAACAAATTATGTGGCTG 57.142 33.333 0.00 0.00 43.81 4.85
1437 1472 5.172934 ACAAATTATGTGGCTGCAAATCAG 58.827 37.500 0.50 0.00 41.93 2.90
1438 1473 5.047164 ACAAATTATGTGGCTGCAAATCAGA 60.047 36.000 0.50 0.00 42.43 3.27
1439 1474 5.664294 AATTATGTGGCTGCAAATCAGAA 57.336 34.783 0.50 0.00 45.72 3.02
1440 1475 4.439305 TTATGTGGCTGCAAATCAGAAC 57.561 40.909 0.50 0.00 45.72 3.01
1445 1480 4.280425 TGTGGCTGCAAATCAGAACATTAA 59.720 37.500 0.50 0.00 45.72 1.40
1446 1481 5.221402 TGTGGCTGCAAATCAGAACATTAAA 60.221 36.000 0.50 0.00 45.72 1.52
1469 1504 3.054878 GTTGAATGTTGCAGGCTTCAAG 58.945 45.455 15.62 0.00 38.04 3.02
1470 1505 1.000060 TGAATGTTGCAGGCTTCAAGC 60.000 47.619 0.00 0.00 41.46 4.01
1482 1517 2.720915 GCTTCAAGCCTTGGAGAATCT 58.279 47.619 17.16 0.00 38.64 2.40
1483 1518 3.087781 GCTTCAAGCCTTGGAGAATCTT 58.912 45.455 17.16 0.00 38.64 2.40
1484 1519 3.119566 GCTTCAAGCCTTGGAGAATCTTG 60.120 47.826 17.16 0.00 38.64 3.02
1495 1530 5.964958 TGGAGAATCTTGGTTCACATTTC 57.035 39.130 0.00 0.00 33.73 2.17
1510 1545 5.705902 TCACATTTCTCTCATGCATGTTTG 58.294 37.500 25.43 16.44 0.00 2.93
1516 1551 3.754850 TCTCTCATGCATGTTTGAACCAG 59.245 43.478 25.43 13.19 0.00 4.00
1523 1664 4.713553 TGCATGTTTGAACCAGTTCTAGA 58.286 39.130 11.56 0.00 40.14 2.43
1539 1680 5.984323 AGTTCTAGAAAAGGACGAACAACTC 59.016 40.000 6.78 0.00 38.93 3.01
1590 1731 3.303132 CGACGGGAATGCAGCTAATTTAC 60.303 47.826 0.00 0.00 0.00 2.01
1805 1946 0.830444 TCTTGTGGCCTACCGTGACT 60.830 55.000 3.32 0.00 39.70 3.41
1807 1948 1.116536 TTGTGGCCTACCGTGACTCA 61.117 55.000 3.32 0.00 39.70 3.41
1814 1955 1.819288 CCTACCGTGACTCAGACACAT 59.181 52.381 8.04 0.00 38.04 3.21
1834 1975 6.148315 ACACATTCTGCATCATATACAATCCG 59.852 38.462 0.00 0.00 0.00 4.18
1843 1984 6.920758 GCATCATATACAATCCGACCTCTATC 59.079 42.308 0.00 0.00 0.00 2.08
1847 1988 0.673985 CAATCCGACCTCTATCGCCA 59.326 55.000 0.00 0.00 40.87 5.69
1856 1997 1.067776 CCTCTATCGCCATCCGGTAAC 60.068 57.143 0.00 0.00 37.59 2.50
1867 2008 3.370527 CCATCCGGTAACATTCCTGTCTT 60.371 47.826 0.00 0.00 33.36 3.01
1875 2016 6.183360 CGGTAACATTCCTGTCTTACATGTTC 60.183 42.308 2.30 0.00 32.10 3.18
1884 2025 8.867112 TCCTGTCTTACATGTTCGAATAATAC 57.133 34.615 2.30 0.00 0.00 1.89
1885 2026 7.924412 TCCTGTCTTACATGTTCGAATAATACC 59.076 37.037 2.30 0.00 0.00 2.73
1886 2027 7.926555 CCTGTCTTACATGTTCGAATAATACCT 59.073 37.037 2.30 0.00 0.00 3.08
1887 2028 9.961265 CTGTCTTACATGTTCGAATAATACCTA 57.039 33.333 2.30 0.00 0.00 3.08
1946 2089 3.801293 GCCTAATATTCGCACCCTACGTT 60.801 47.826 0.00 0.00 0.00 3.99
1948 2091 2.521105 ATATTCGCACCCTACGTTCC 57.479 50.000 0.00 0.00 0.00 3.62
2051 2194 8.641498 ACAGATGGATTCTAAAAGAAATGTGT 57.359 30.769 0.00 0.00 37.82 3.72
2126 2269 4.092383 GGCATTTGCAAGCTGTATTTTCAG 59.908 41.667 10.16 0.00 44.36 3.02
2204 2347 9.896645 ATATGAGAGTTTCATCTAACACACAAT 57.103 29.630 0.00 0.00 43.03 2.71
2252 2395 6.056090 AGAGAGGAAAAATGTAAGAGGGTC 57.944 41.667 0.00 0.00 0.00 4.46
2399 2542 6.018588 CCATGCAACCTTTGTTTATGCATATG 60.019 38.462 7.36 0.00 38.71 1.78
2404 2547 6.035220 CAACCTTTGTTTATGCATATGCACAG 59.965 38.462 31.76 17.11 43.08 3.66
2450 2593 7.623999 ATCCAACTCAGACATATAGGAACAT 57.376 36.000 0.00 0.00 0.00 2.71
2451 2594 7.437713 TCCAACTCAGACATATAGGAACATT 57.562 36.000 0.00 0.00 0.00 2.71
2504 2660 5.835113 TTTCTAGCTCAAACCCAATATGC 57.165 39.130 0.00 0.00 0.00 3.14
2548 2704 2.039418 ACACCACAAGCTACTCAGACA 58.961 47.619 0.00 0.00 0.00 3.41
2745 2901 2.222227 AGGTCATTCTTTTGCTCCCC 57.778 50.000 0.00 0.00 0.00 4.81
2757 2913 2.122783 TGCTCCCCGGTTATTTTCAG 57.877 50.000 0.00 0.00 0.00 3.02
2788 2944 5.363101 ACATACAGTGTGGAGCTTATGATG 58.637 41.667 5.88 0.00 40.28 3.07
2789 2945 3.988976 ACAGTGTGGAGCTTATGATGT 57.011 42.857 0.00 0.00 0.00 3.06
2790 2946 6.098266 ACATACAGTGTGGAGCTTATGATGTA 59.902 38.462 5.88 3.72 40.28 2.29
2791 2947 4.759782 ACAGTGTGGAGCTTATGATGTAC 58.240 43.478 0.00 0.00 0.00 2.90
2792 2948 4.467795 ACAGTGTGGAGCTTATGATGTACT 59.532 41.667 0.00 0.00 0.00 2.73
2793 2949 5.046529 CAGTGTGGAGCTTATGATGTACTC 58.953 45.833 0.00 0.00 0.00 2.59
2794 2950 4.100189 AGTGTGGAGCTTATGATGTACTCC 59.900 45.833 0.00 0.00 45.87 3.85
2795 2951 3.388024 TGTGGAGCTTATGATGTACTCCC 59.612 47.826 4.98 0.00 45.22 4.30
2796 2952 3.643792 GTGGAGCTTATGATGTACTCCCT 59.356 47.826 4.98 0.00 45.22 4.20
2797 2953 3.898123 TGGAGCTTATGATGTACTCCCTC 59.102 47.826 4.98 0.00 45.22 4.30
2798 2954 3.259625 GGAGCTTATGATGTACTCCCTCC 59.740 52.174 0.00 0.00 40.91 4.30
2799 2955 2.894126 AGCTTATGATGTACTCCCTCCG 59.106 50.000 0.00 0.00 0.00 4.63
2800 2956 2.628657 GCTTATGATGTACTCCCTCCGT 59.371 50.000 0.00 0.00 0.00 4.69
2801 2957 3.825014 GCTTATGATGTACTCCCTCCGTA 59.175 47.826 0.00 0.00 0.00 4.02
2802 2958 4.280174 GCTTATGATGTACTCCCTCCGTAA 59.720 45.833 0.00 0.00 0.00 3.18
2803 2959 5.221382 GCTTATGATGTACTCCCTCCGTAAA 60.221 44.000 0.00 0.00 0.00 2.01
2804 2960 4.667519 ATGATGTACTCCCTCCGTAAAC 57.332 45.455 0.00 0.00 0.00 2.01
2805 2961 3.705051 TGATGTACTCCCTCCGTAAACT 58.295 45.455 0.00 0.00 0.00 2.66
2806 2962 4.858850 TGATGTACTCCCTCCGTAAACTA 58.141 43.478 0.00 0.00 0.00 2.24
2807 2963 5.263599 TGATGTACTCCCTCCGTAAACTAA 58.736 41.667 0.00 0.00 0.00 2.24
2808 2964 5.895534 TGATGTACTCCCTCCGTAAACTAAT 59.104 40.000 0.00 0.00 0.00 1.73
2809 2965 7.062322 TGATGTACTCCCTCCGTAAACTAATA 58.938 38.462 0.00 0.00 0.00 0.98
2810 2966 7.727186 TGATGTACTCCCTCCGTAAACTAATAT 59.273 37.037 0.00 0.00 0.00 1.28
2811 2967 9.236006 GATGTACTCCCTCCGTAAACTAATATA 57.764 37.037 0.00 0.00 0.00 0.86
2812 2968 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
2813 2969 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
2814 2970 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2815 2971 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2816 2972 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2817 2973 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
2818 2974 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
2819 2975 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
2820 2976 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2821 2977 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2822 2978 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2823 2979 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2828 2984 9.694137 AACTAATATAAGAGCGTTTAGATCACC 57.306 33.333 0.00 0.00 37.82 4.02
2829 2985 8.857098 ACTAATATAAGAGCGTTTAGATCACCA 58.143 33.333 0.00 0.00 37.82 4.17
2830 2986 7.948278 AATATAAGAGCGTTTAGATCACCAC 57.052 36.000 0.00 0.00 37.82 4.16
2831 2987 3.963428 AAGAGCGTTTAGATCACCACT 57.037 42.857 0.00 0.00 37.82 4.00
2832 2988 3.963428 AGAGCGTTTAGATCACCACTT 57.037 42.857 0.00 0.00 37.82 3.16
2833 2989 4.273148 AGAGCGTTTAGATCACCACTTT 57.727 40.909 0.00 0.00 37.82 2.66
2834 2990 5.401531 AGAGCGTTTAGATCACCACTTTA 57.598 39.130 0.00 0.00 37.82 1.85
2835 2991 5.411781 AGAGCGTTTAGATCACCACTTTAG 58.588 41.667 0.00 0.00 37.82 1.85
2836 2992 5.047235 AGAGCGTTTAGATCACCACTTTAGT 60.047 40.000 0.00 0.00 37.82 2.24
2837 2993 5.548406 AGCGTTTAGATCACCACTTTAGTT 58.452 37.500 0.00 0.00 0.00 2.24
2838 2994 6.694447 AGCGTTTAGATCACCACTTTAGTTA 58.306 36.000 0.00 0.00 0.00 2.24
2839 2995 7.328737 AGCGTTTAGATCACCACTTTAGTTAT 58.671 34.615 0.00 0.00 0.00 1.89
2840 2996 7.491696 AGCGTTTAGATCACCACTTTAGTTATC 59.508 37.037 0.00 0.00 0.00 1.75
2841 2997 7.491696 GCGTTTAGATCACCACTTTAGTTATCT 59.508 37.037 0.00 0.00 0.00 1.98
2847 3003 9.654663 AGATCACCACTTTAGTTATCTAAACAC 57.345 33.333 0.00 0.00 40.05 3.32
2848 3004 9.654663 GATCACCACTTTAGTTATCTAAACACT 57.345 33.333 2.47 0.00 40.05 3.55
2849 3005 9.654663 ATCACCACTTTAGTTATCTAAACACTC 57.345 33.333 2.47 0.00 40.05 3.51
2850 3006 8.867097 TCACCACTTTAGTTATCTAAACACTCT 58.133 33.333 2.47 0.00 40.05 3.24
2851 3007 9.490379 CACCACTTTAGTTATCTAAACACTCTT 57.510 33.333 2.47 0.00 40.05 2.85
2852 3008 9.490379 ACCACTTTAGTTATCTAAACACTCTTG 57.510 33.333 2.47 0.00 40.05 3.02
2853 3009 9.490379 CCACTTTAGTTATCTAAACACTCTTGT 57.510 33.333 2.47 0.00 40.05 3.16
2868 3024 9.490379 AAACACTCTTGTATTAGTTTACAGAGG 57.510 33.333 0.00 0.00 33.55 3.69
2869 3025 8.418597 ACACTCTTGTATTAGTTTACAGAGGA 57.581 34.615 0.00 0.00 34.80 3.71
2870 3026 8.867097 ACACTCTTGTATTAGTTTACAGAGGAA 58.133 33.333 0.00 0.00 34.80 3.36
3482 3659 4.094739 TCATCGGTAACATGACTGCAATTG 59.905 41.667 0.00 0.00 31.88 2.32
3816 4067 4.133820 TGCCATATATTGAAAGGACACCG 58.866 43.478 0.00 0.00 0.00 4.94
4105 4913 3.279434 GGATTCACTGTAACACATCCCC 58.721 50.000 0.00 0.00 0.00 4.81
4107 4915 3.417069 TTCACTGTAACACATCCCCAG 57.583 47.619 0.00 0.00 0.00 4.45
4145 4953 9.765795 AATAGTAAAGCATAATCTACAGTGACC 57.234 33.333 0.00 0.00 0.00 4.02
4147 4955 5.435686 AAAGCATAATCTACAGTGACCCA 57.564 39.130 0.00 0.00 0.00 4.51
4153 4961 1.656587 TCTACAGTGACCCATTGCCT 58.343 50.000 0.00 0.00 0.00 4.75
4154 4962 1.278985 TCTACAGTGACCCATTGCCTG 59.721 52.381 0.00 0.00 0.00 4.85
4924 6031 7.443272 ACTGAGGTAAACAGTACAAATAACCAC 59.557 37.037 0.00 0.00 45.10 4.16
5095 6215 3.388024 AGCTGACCTTAAGAGTGAACACA 59.612 43.478 3.36 0.00 0.00 3.72
5192 6312 0.912487 TGGGCGGTCTCCTTTGGTAT 60.912 55.000 0.00 0.00 0.00 2.73
5420 6576 9.407380 TCCAAATTCTTGCATATACACTTGTAT 57.593 29.630 7.07 7.07 43.15 2.29
5513 6679 2.480416 CCTTACTAGAGGCAGTGAAGCG 60.480 54.545 0.00 0.00 34.64 4.68
5545 6711 2.165998 GAGTGGCCTCATTGCTCTTTT 58.834 47.619 3.32 0.00 37.67 2.27
5701 6867 0.687757 TCCTCTCCACATAGCCGCTT 60.688 55.000 0.00 0.00 0.00 4.68
6114 7339 2.174639 TCCCTTGCCATCCGTTGAATAT 59.825 45.455 0.00 0.00 0.00 1.28
6163 7388 3.201290 GCTGTGGATTCCTCACACTATG 58.799 50.000 3.95 0.00 39.83 2.23
6348 7585 7.040132 AGGCCAAGTGAAATAAGAAGAAGAAAG 60.040 37.037 5.01 0.00 0.00 2.62
6397 7656 8.208224 TCATGAAGACTAGTAACCTGTTTTTCA 58.792 33.333 0.00 0.00 0.00 2.69
6464 7725 1.949465 AGCAAGAAAACGACCGAACT 58.051 45.000 0.00 0.00 0.00 3.01
6465 7726 3.102052 AGCAAGAAAACGACCGAACTA 57.898 42.857 0.00 0.00 0.00 2.24
6652 7914 1.534336 TTGCCATGGATGCAAAGCGT 61.534 50.000 18.40 0.00 45.11 5.07
6788 8051 2.029288 CGAGTGCGCATCTGGTTGT 61.029 57.895 15.91 0.00 0.00 3.32
6814 8077 0.322975 TTCTTCAGGCTGCAGAGGTC 59.677 55.000 20.43 3.18 0.00 3.85
6848 8124 1.981495 GATAGTCTTGGGCCTAGGCAT 59.019 52.381 34.09 16.86 44.11 4.40
6897 8175 1.202651 AGTGCTAGTTGTGCGGTCTTT 60.203 47.619 0.00 0.00 0.00 2.52
6901 8179 0.179043 TAGTTGTGCGGTCTTTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
6917 8195 3.143211 TGCCACCTTAATTAACCGTGT 57.857 42.857 14.93 1.52 0.00 4.49
6919 8197 3.244630 TGCCACCTTAATTAACCGTGTCT 60.245 43.478 14.93 0.00 0.00 3.41
6942 8220 9.736023 GTCTTGTATGGTTTCATCATTAAATCC 57.264 33.333 0.00 0.00 34.96 3.01
6947 8225 6.677781 TGGTTTCATCATTAAATCCGTCTC 57.322 37.500 0.00 0.00 0.00 3.36
6950 8228 6.202954 GGTTTCATCATTAAATCCGTCTCGAT 59.797 38.462 0.00 0.00 0.00 3.59
6956 8234 6.382608 TCATTAAATCCGTCTCGATGAGATC 58.617 40.000 0.00 0.00 40.98 2.75
6967 8245 6.413526 CGTCTCGATGAGATCTTCAAAACTAG 59.586 42.308 0.00 0.00 40.98 2.57
7017 8295 3.992643 TGGACAAAAAGTTGCCATGATG 58.007 40.909 0.00 0.00 38.39 3.07
7033 8311 5.572896 GCCATGATGTTTACACTAAAGTTGC 59.427 40.000 0.00 0.00 0.00 4.17
7040 8318 5.106869 TGTTTACACTAAAGTTGCCATAGCG 60.107 40.000 0.00 0.00 44.31 4.26
7173 8451 9.075678 TGGAAATTTTTAGTAATTAACCACGGA 57.924 29.630 0.00 0.00 33.41 4.69
7300 8578 5.304101 TGACCATGGCAAATCTAGTTTTTGT 59.696 36.000 13.04 0.00 36.63 2.83
7308 8586 6.417930 GGCAAATCTAGTTTTTGTCAGTGAAC 59.582 38.462 15.74 0.00 38.30 3.18
7309 8587 6.972328 GCAAATCTAGTTTTTGTCAGTGAACA 59.028 34.615 16.68 0.00 36.63 3.18
7310 8588 7.649306 GCAAATCTAGTTTTTGTCAGTGAACAT 59.351 33.333 16.68 0.00 36.63 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.113411 AGCGGCATTGTAAGACTTATAAGTT 58.887 36.000 18.96 7.26 39.88 2.66
2 3 7.709269 TTAGCGGCATTGTAAGACTTATAAG 57.291 36.000 11.05 11.05 0.00 1.73
5 6 5.405571 CGATTAGCGGCATTGTAAGACTTAT 59.594 40.000 1.45 0.00 36.03 1.73
6 7 4.743151 CGATTAGCGGCATTGTAAGACTTA 59.257 41.667 1.45 0.00 36.03 2.24
7 8 3.555956 CGATTAGCGGCATTGTAAGACTT 59.444 43.478 1.45 0.00 36.03 3.01
8 9 3.123804 CGATTAGCGGCATTGTAAGACT 58.876 45.455 1.45 0.00 36.03 3.24
9 10 2.864343 ACGATTAGCGGCATTGTAAGAC 59.136 45.455 1.45 0.00 46.49 3.01
10 11 2.863740 CACGATTAGCGGCATTGTAAGA 59.136 45.455 1.45 0.00 46.49 2.10
11 12 2.863740 TCACGATTAGCGGCATTGTAAG 59.136 45.455 1.45 0.00 46.49 2.34
12 13 2.894902 TCACGATTAGCGGCATTGTAA 58.105 42.857 1.45 0.00 46.49 2.41
13 14 2.588027 TCACGATTAGCGGCATTGTA 57.412 45.000 1.45 0.00 46.49 2.41
14 15 1.599071 CATCACGATTAGCGGCATTGT 59.401 47.619 1.45 0.00 46.49 2.71
15 16 1.599071 ACATCACGATTAGCGGCATTG 59.401 47.619 1.45 0.00 46.49 2.82
16 17 1.953559 ACATCACGATTAGCGGCATT 58.046 45.000 1.45 0.00 46.49 3.56
17 18 2.812358 TACATCACGATTAGCGGCAT 57.188 45.000 1.45 0.00 46.49 4.40
18 19 2.609491 GGATACATCACGATTAGCGGCA 60.609 50.000 1.45 0.00 46.49 5.69
19 20 1.993370 GGATACATCACGATTAGCGGC 59.007 52.381 0.00 0.00 46.49 6.53
20 21 3.577649 AGGATACATCACGATTAGCGG 57.422 47.619 0.00 0.00 42.47 5.52
21 22 4.546570 TCAAGGATACATCACGATTAGCG 58.453 43.478 0.00 0.00 43.58 4.26
22 23 7.598869 TGTAATCAAGGATACATCACGATTAGC 59.401 37.037 0.00 0.00 41.41 3.09
23 24 9.476202 TTGTAATCAAGGATACATCACGATTAG 57.524 33.333 0.00 0.00 41.41 1.73
24 25 9.476202 CTTGTAATCAAGGATACATCACGATTA 57.524 33.333 0.00 0.00 45.02 1.75
25 26 8.370493 CTTGTAATCAAGGATACATCACGATT 57.630 34.615 0.00 0.00 45.02 3.34
26 27 7.953158 CTTGTAATCAAGGATACATCACGAT 57.047 36.000 0.00 0.00 45.02 3.73
46 47 9.896645 ATTCATCTTCATCAGTATAACACTTGT 57.103 29.630 0.00 0.00 34.26 3.16
48 49 8.834465 GCATTCATCTTCATCAGTATAACACTT 58.166 33.333 0.00 0.00 34.26 3.16
49 50 8.209584 AGCATTCATCTTCATCAGTATAACACT 58.790 33.333 0.00 0.00 38.32 3.55
50 51 8.375608 AGCATTCATCTTCATCAGTATAACAC 57.624 34.615 0.00 0.00 0.00 3.32
55 56 9.384764 CATCATAGCATTCATCTTCATCAGTAT 57.615 33.333 0.00 0.00 0.00 2.12
56 57 8.591072 TCATCATAGCATTCATCTTCATCAGTA 58.409 33.333 0.00 0.00 0.00 2.74
57 58 7.450903 TCATCATAGCATTCATCTTCATCAGT 58.549 34.615 0.00 0.00 0.00 3.41
58 59 7.907214 TCATCATAGCATTCATCTTCATCAG 57.093 36.000 0.00 0.00 0.00 2.90
59 60 7.336931 CCATCATCATAGCATTCATCTTCATCA 59.663 37.037 0.00 0.00 0.00 3.07
60 61 7.553044 TCCATCATCATAGCATTCATCTTCATC 59.447 37.037 0.00 0.00 0.00 2.92
61 62 7.402862 TCCATCATCATAGCATTCATCTTCAT 58.597 34.615 0.00 0.00 0.00 2.57
62 63 6.775708 TCCATCATCATAGCATTCATCTTCA 58.224 36.000 0.00 0.00 0.00 3.02
63 64 7.104290 TCTCCATCATCATAGCATTCATCTTC 58.896 38.462 0.00 0.00 0.00 2.87
64 65 7.017319 TCTCCATCATCATAGCATTCATCTT 57.983 36.000 0.00 0.00 0.00 2.40
65 66 6.622427 TCTCCATCATCATAGCATTCATCT 57.378 37.500 0.00 0.00 0.00 2.90
66 67 6.261158 CCATCTCCATCATCATAGCATTCATC 59.739 42.308 0.00 0.00 0.00 2.92
67 68 6.122964 CCATCTCCATCATCATAGCATTCAT 58.877 40.000 0.00 0.00 0.00 2.57
68 69 5.013808 ACCATCTCCATCATCATAGCATTCA 59.986 40.000 0.00 0.00 0.00 2.57
69 70 5.498393 ACCATCTCCATCATCATAGCATTC 58.502 41.667 0.00 0.00 0.00 2.67
70 71 5.516059 ACCATCTCCATCATCATAGCATT 57.484 39.130 0.00 0.00 0.00 3.56
71 72 5.516059 AACCATCTCCATCATCATAGCAT 57.484 39.130 0.00 0.00 0.00 3.79
72 73 4.987963 AACCATCTCCATCATCATAGCA 57.012 40.909 0.00 0.00 0.00 3.49
73 74 5.821470 CCATAACCATCTCCATCATCATAGC 59.179 44.000 0.00 0.00 0.00 2.97
74 75 5.821470 GCCATAACCATCTCCATCATCATAG 59.179 44.000 0.00 0.00 0.00 2.23
75 76 5.627503 CGCCATAACCATCTCCATCATCATA 60.628 44.000 0.00 0.00 0.00 2.15
76 77 4.597004 GCCATAACCATCTCCATCATCAT 58.403 43.478 0.00 0.00 0.00 2.45
77 78 3.557686 CGCCATAACCATCTCCATCATCA 60.558 47.826 0.00 0.00 0.00 3.07
78 79 3.005554 CGCCATAACCATCTCCATCATC 58.994 50.000 0.00 0.00 0.00 2.92
79 80 2.290514 CCGCCATAACCATCTCCATCAT 60.291 50.000 0.00 0.00 0.00 2.45
80 81 1.072173 CCGCCATAACCATCTCCATCA 59.928 52.381 0.00 0.00 0.00 3.07
81 82 1.072331 ACCGCCATAACCATCTCCATC 59.928 52.381 0.00 0.00 0.00 3.51
82 83 1.140312 ACCGCCATAACCATCTCCAT 58.860 50.000 0.00 0.00 0.00 3.41
83 84 0.180171 CACCGCCATAACCATCTCCA 59.820 55.000 0.00 0.00 0.00 3.86
84 85 0.535102 CCACCGCCATAACCATCTCC 60.535 60.000 0.00 0.00 0.00 3.71
85 86 1.166531 GCCACCGCCATAACCATCTC 61.167 60.000 0.00 0.00 0.00 2.75
86 87 1.152963 GCCACCGCCATAACCATCT 60.153 57.895 0.00 0.00 0.00 2.90
87 88 0.107831 TAGCCACCGCCATAACCATC 59.892 55.000 0.00 0.00 34.57 3.51
88 89 0.179029 GTAGCCACCGCCATAACCAT 60.179 55.000 0.00 0.00 34.57 3.55
89 90 1.222387 GTAGCCACCGCCATAACCA 59.778 57.895 0.00 0.00 34.57 3.67
90 91 0.754472 TAGTAGCCACCGCCATAACC 59.246 55.000 0.00 0.00 34.57 2.85
91 92 2.833631 ATAGTAGCCACCGCCATAAC 57.166 50.000 0.00 0.00 34.57 1.89
92 93 3.770046 TCTATAGTAGCCACCGCCATAA 58.230 45.455 0.00 0.00 34.57 1.90
93 94 3.444792 TCTATAGTAGCCACCGCCATA 57.555 47.619 0.00 0.00 34.57 2.74
94 95 2.304221 TCTATAGTAGCCACCGCCAT 57.696 50.000 0.00 0.00 34.57 4.40
95 96 1.893137 CATCTATAGTAGCCACCGCCA 59.107 52.381 0.00 0.00 34.57 5.69
96 97 1.204941 CCATCTATAGTAGCCACCGCC 59.795 57.143 0.00 0.00 34.57 6.13
97 98 1.204941 CCCATCTATAGTAGCCACCGC 59.795 57.143 0.00 0.00 0.00 5.68
98 99 2.803956 TCCCATCTATAGTAGCCACCG 58.196 52.381 0.00 0.00 0.00 4.94
99 100 4.080863 CCATTCCCATCTATAGTAGCCACC 60.081 50.000 0.00 0.00 0.00 4.61
100 101 4.532521 ACCATTCCCATCTATAGTAGCCAC 59.467 45.833 0.00 0.00 0.00 5.01
101 102 4.532126 CACCATTCCCATCTATAGTAGCCA 59.468 45.833 0.00 0.00 0.00 4.75
102 103 4.777896 TCACCATTCCCATCTATAGTAGCC 59.222 45.833 0.00 0.00 0.00 3.93
103 104 5.246203 TGTCACCATTCCCATCTATAGTAGC 59.754 44.000 0.00 0.00 0.00 3.58
104 105 6.918067 TGTCACCATTCCCATCTATAGTAG 57.082 41.667 0.00 0.00 0.00 2.57
105 106 6.042781 GGTTGTCACCATTCCCATCTATAGTA 59.957 42.308 0.00 0.00 43.61 1.82
106 107 5.163195 GGTTGTCACCATTCCCATCTATAGT 60.163 44.000 0.00 0.00 43.61 2.12
107 108 5.308825 GGTTGTCACCATTCCCATCTATAG 58.691 45.833 0.00 0.00 43.61 1.31
108 109 5.304686 GGTTGTCACCATTCCCATCTATA 57.695 43.478 0.00 0.00 43.61 1.31
109 110 4.170468 GGTTGTCACCATTCCCATCTAT 57.830 45.455 0.00 0.00 43.61 1.98
110 111 3.644966 GGTTGTCACCATTCCCATCTA 57.355 47.619 0.00 0.00 43.61 1.98
111 112 2.514458 GGTTGTCACCATTCCCATCT 57.486 50.000 0.00 0.00 43.61 2.90
121 122 1.692411 AAAGCCTTCAGGTTGTCACC 58.308 50.000 0.00 0.00 44.67 4.02
122 123 2.687935 TCAAAAGCCTTCAGGTTGTCAC 59.312 45.455 0.00 0.00 35.99 3.67
123 124 3.011566 TCAAAAGCCTTCAGGTTGTCA 57.988 42.857 0.00 0.00 35.99 3.58
124 125 5.705609 TTATCAAAAGCCTTCAGGTTGTC 57.294 39.130 0.00 0.00 35.99 3.18
125 126 6.041979 ACATTTATCAAAAGCCTTCAGGTTGT 59.958 34.615 0.00 0.00 35.99 3.32
126 127 6.458210 ACATTTATCAAAAGCCTTCAGGTTG 58.542 36.000 0.00 0.00 35.99 3.77
127 128 6.670695 ACATTTATCAAAAGCCTTCAGGTT 57.329 33.333 0.00 0.00 37.97 3.50
128 129 6.670695 AACATTTATCAAAAGCCTTCAGGT 57.329 33.333 0.00 0.00 37.57 4.00
129 130 8.689972 AGATAACATTTATCAAAAGCCTTCAGG 58.310 33.333 8.30 0.00 38.53 3.86
130 131 9.512435 CAGATAACATTTATCAAAAGCCTTCAG 57.488 33.333 8.30 0.00 0.00 3.02
131 132 9.241919 TCAGATAACATTTATCAAAAGCCTTCA 57.758 29.630 8.30 0.00 0.00 3.02
134 135 9.193806 ACATCAGATAACATTTATCAAAAGCCT 57.806 29.630 8.30 0.00 0.00 4.58
135 136 9.241317 CACATCAGATAACATTTATCAAAAGCC 57.759 33.333 8.30 0.00 0.00 4.35
136 137 9.241317 CCACATCAGATAACATTTATCAAAAGC 57.759 33.333 8.30 0.00 0.00 3.51
140 141 9.685276 AGAACCACATCAGATAACATTTATCAA 57.315 29.630 8.30 0.00 0.00 2.57
141 142 9.330063 GAGAACCACATCAGATAACATTTATCA 57.670 33.333 8.30 0.00 0.00 2.15
142 143 9.553064 AGAGAACCACATCAGATAACATTTATC 57.447 33.333 0.00 0.00 0.00 1.75
143 144 9.553064 GAGAGAACCACATCAGATAACATTTAT 57.447 33.333 0.00 0.00 0.00 1.40
144 145 7.987458 GGAGAGAACCACATCAGATAACATTTA 59.013 37.037 0.00 0.00 0.00 1.40
145 146 6.825721 GGAGAGAACCACATCAGATAACATTT 59.174 38.462 0.00 0.00 0.00 2.32
146 147 6.352516 GGAGAGAACCACATCAGATAACATT 58.647 40.000 0.00 0.00 0.00 2.71
147 148 5.163258 GGGAGAGAACCACATCAGATAACAT 60.163 44.000 0.00 0.00 0.00 2.71
148 149 4.162320 GGGAGAGAACCACATCAGATAACA 59.838 45.833 0.00 0.00 0.00 2.41
149 150 4.443598 GGGGAGAGAACCACATCAGATAAC 60.444 50.000 0.00 0.00 32.85 1.89
150 151 3.711704 GGGGAGAGAACCACATCAGATAA 59.288 47.826 0.00 0.00 32.85 1.75
151 152 3.309296 GGGGAGAGAACCACATCAGATA 58.691 50.000 0.00 0.00 32.85 1.98
152 153 2.122768 GGGGAGAGAACCACATCAGAT 58.877 52.381 0.00 0.00 32.85 2.90
153 154 1.203300 TGGGGAGAGAACCACATCAGA 60.203 52.381 0.00 0.00 38.54 3.27
154 155 1.279496 TGGGGAGAGAACCACATCAG 58.721 55.000 0.00 0.00 38.54 2.90
155 156 3.492686 TGGGGAGAGAACCACATCA 57.507 52.632 0.00 0.00 38.54 3.07
160 161 2.061848 TCATTTGTGGGGAGAGAACCA 58.938 47.619 0.00 0.00 0.00 3.67
161 162 2.437413 GTCATTTGTGGGGAGAGAACC 58.563 52.381 0.00 0.00 0.00 3.62
162 163 2.076863 CGTCATTTGTGGGGAGAGAAC 58.923 52.381 0.00 0.00 0.00 3.01
163 164 1.974957 TCGTCATTTGTGGGGAGAGAA 59.025 47.619 0.00 0.00 0.00 2.87
164 165 1.639722 TCGTCATTTGTGGGGAGAGA 58.360 50.000 0.00 0.00 0.00 3.10
165 166 2.472695 TTCGTCATTTGTGGGGAGAG 57.527 50.000 0.00 0.00 0.00 3.20
166 167 2.552155 CCTTTCGTCATTTGTGGGGAGA 60.552 50.000 0.00 0.00 0.00 3.71
188 189 7.898100 TCTGTCCATGCTATAAAGGAGAGATAT 59.102 37.037 3.38 0.00 43.22 1.63
190 191 6.080682 TCTGTCCATGCTATAAAGGAGAGAT 58.919 40.000 3.38 0.00 43.22 2.75
192 193 5.798125 TCTGTCCATGCTATAAAGGAGAG 57.202 43.478 0.00 0.00 41.48 3.20
196 198 7.756395 ATTTCATCTGTCCATGCTATAAAGG 57.244 36.000 0.00 0.00 0.00 3.11
206 208 6.153340 CCCAAAACACTATTTCATCTGTCCAT 59.847 38.462 0.00 0.00 0.00 3.41
211 213 6.824305 AGACCCAAAACACTATTTCATCTG 57.176 37.500 0.00 0.00 0.00 2.90
214 216 6.434340 GGAGAAGACCCAAAACACTATTTCAT 59.566 38.462 0.00 0.00 0.00 2.57
228 230 4.387026 AATTCACATTGGAGAAGACCCA 57.613 40.909 0.00 0.00 0.00 4.51
231 233 5.189180 AGGCTAATTCACATTGGAGAAGAC 58.811 41.667 0.00 0.00 0.00 3.01
235 237 6.100279 AGTCATAGGCTAATTCACATTGGAGA 59.900 38.462 0.00 0.00 0.00 3.71
240 242 8.757982 AATCAAGTCATAGGCTAATTCACATT 57.242 30.769 0.00 0.00 0.00 2.71
342 344 9.638176 AGAGAATCACTTTGATTTGCCTATTAT 57.362 29.630 3.01 0.00 46.20 1.28
406 408 7.418337 AGTTAGTGGGTTTTCACTCATTTTT 57.582 32.000 0.45 0.00 43.82 1.94
408 410 8.576442 CATTAGTTAGTGGGTTTTCACTCATTT 58.424 33.333 0.45 0.00 43.82 2.32
409 411 7.942341 TCATTAGTTAGTGGGTTTTCACTCATT 59.058 33.333 0.45 0.00 43.82 2.57
430 432 0.179067 GTCCATTCCGGCGGTCATTA 60.179 55.000 27.32 2.18 33.14 1.90
437 439 3.131478 GGGTTGTCCATTCCGGCG 61.131 66.667 0.00 0.00 35.00 6.46
438 440 2.754254 GGGGTTGTCCATTCCGGC 60.754 66.667 0.00 0.00 37.22 6.13
439 441 1.677633 GTGGGGTTGTCCATTCCGG 60.678 63.158 0.00 0.00 39.26 5.14
441 443 1.304962 GGGTGGGGTTGTCCATTCC 60.305 63.158 0.00 0.00 39.26 3.01
463 465 3.670377 GGCGTTGACAAGGGTGGC 61.670 66.667 9.75 0.00 0.00 5.01
471 473 1.180456 TTAGGTCTCCGGCGTTGACA 61.180 55.000 23.61 8.12 32.84 3.58
480 482 0.590195 CGGTCGGTATTAGGTCTCCG 59.410 60.000 0.00 0.00 43.65 4.63
482 484 0.313357 GGCGGTCGGTATTAGGTCTC 59.687 60.000 0.00 0.00 0.00 3.36
483 485 0.396139 TGGCGGTCGGTATTAGGTCT 60.396 55.000 0.00 0.00 0.00 3.85
484 486 0.461135 TTGGCGGTCGGTATTAGGTC 59.539 55.000 0.00 0.00 0.00 3.85
485 487 1.125633 ATTGGCGGTCGGTATTAGGT 58.874 50.000 0.00 0.00 0.00 3.08
487 489 3.107642 AGAATTGGCGGTCGGTATTAG 57.892 47.619 0.00 0.00 0.00 1.73
488 490 3.006110 CCTAGAATTGGCGGTCGGTATTA 59.994 47.826 0.00 0.00 0.00 0.98
489 491 2.224209 CCTAGAATTGGCGGTCGGTATT 60.224 50.000 0.00 0.00 0.00 1.89
490 492 1.343465 CCTAGAATTGGCGGTCGGTAT 59.657 52.381 0.00 0.00 0.00 2.73
511 513 4.265282 CCATTTTGGTGCTTGCGG 57.735 55.556 0.00 0.00 31.35 5.69
529 531 2.666190 GAGCTTGCACTGGCGTCA 60.666 61.111 0.00 0.00 45.35 4.35
537 539 3.198863 CTCTTGATGTTGAGCTTGCAC 57.801 47.619 0.00 0.00 0.00 4.57
545 547 2.171003 TCGAGGAGCTCTTGATGTTGA 58.829 47.619 14.64 0.00 31.11 3.18
548 550 5.714333 ACATATATCGAGGAGCTCTTGATGT 59.286 40.000 14.64 14.02 44.30 3.06
553 555 4.580868 TCGACATATATCGAGGAGCTCTT 58.419 43.478 14.64 5.66 45.84 2.85
567 569 2.355756 GCAACAACCAGCATCGACATAT 59.644 45.455 0.00 0.00 0.00 1.78
568 570 1.737236 GCAACAACCAGCATCGACATA 59.263 47.619 0.00 0.00 0.00 2.29
569 571 0.523072 GCAACAACCAGCATCGACAT 59.477 50.000 0.00 0.00 0.00 3.06
570 572 0.534877 AGCAACAACCAGCATCGACA 60.535 50.000 0.00 0.00 0.00 4.35
571 573 0.593128 AAGCAACAACCAGCATCGAC 59.407 50.000 0.00 0.00 0.00 4.20
572 574 0.592637 CAAGCAACAACCAGCATCGA 59.407 50.000 0.00 0.00 0.00 3.59
575 577 1.007038 CGCAAGCAACAACCAGCAT 60.007 52.632 0.00 0.00 0.00 3.79
628 630 2.109126 GTGCTCCTGATTGCCGGTC 61.109 63.158 1.90 0.00 0.00 4.79
635 637 1.471119 CAATGCCAGTGCTCCTGATT 58.529 50.000 5.64 0.00 44.49 2.57
637 639 1.001764 CCAATGCCAGTGCTCCTGA 60.002 57.895 5.64 0.00 44.49 3.86
638 640 2.707849 GCCAATGCCAGTGCTCCTG 61.708 63.158 0.00 0.00 41.15 3.86
639 641 2.362120 GCCAATGCCAGTGCTCCT 60.362 61.111 0.00 0.00 38.71 3.69
665 667 1.374758 GGTGCCTCTGACTTGTCCG 60.375 63.158 0.00 0.00 0.00 4.79
675 677 1.349357 GTCTTCTTCCTTGGTGCCTCT 59.651 52.381 0.00 0.00 0.00 3.69
683 685 0.322906 GGCCTGGGTCTTCTTCCTTG 60.323 60.000 0.00 0.00 0.00 3.61
684 686 1.501654 GGGCCTGGGTCTTCTTCCTT 61.502 60.000 0.84 0.00 0.00 3.36
721 747 2.768253 ATGATGAGTGGAAAGCGTCA 57.232 45.000 0.00 0.00 32.69 4.35
736 762 7.613801 TGTATAAACCACAGTTTGCCTTATGAT 59.386 33.333 1.55 0.00 45.77 2.45
738 764 7.151999 TGTATAAACCACAGTTTGCCTTATG 57.848 36.000 1.55 0.00 45.77 1.90
739 765 7.768807 TTGTATAAACCACAGTTTGCCTTAT 57.231 32.000 1.55 0.00 45.77 1.73
750 776 8.410673 TCTGCCTTTTTATTGTATAAACCACA 57.589 30.769 0.00 0.00 0.00 4.17
777 803 7.977853 AGATTTATCAAAAGGTGTGATGCATTC 59.022 33.333 0.00 0.00 36.41 2.67
823 852 8.333186 GTCCCATAATATAAGAACGTTGTTGAC 58.667 37.037 19.93 11.27 0.00 3.18
828 857 6.218019 TCCGTCCCATAATATAAGAACGTTG 58.782 40.000 5.00 0.00 0.00 4.10
831 860 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
833 862 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
842 871 3.339713 AACTATTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
846 875 3.007635 CACAAAACTATTCCCTCCGTCC 58.992 50.000 0.00 0.00 0.00 4.79
849 878 4.517453 TCAAACACAAAACTATTCCCTCCG 59.483 41.667 0.00 0.00 0.00 4.63
865 894 5.335897 ACATAGGAATGCATGTGTCAAACAC 60.336 40.000 0.00 3.29 41.92 3.32
867 896 5.314923 ACATAGGAATGCATGTGTCAAAC 57.685 39.130 0.00 0.00 36.50 2.93
872 901 5.048083 ACGAAAAACATAGGAATGCATGTGT 60.048 36.000 0.00 0.00 35.59 3.72
895 924 0.890996 CAGGACCCAAGAGGCAACAC 60.891 60.000 0.00 0.00 40.58 3.32
900 929 1.228552 TTTGCAGGACCCAAGAGGC 60.229 57.895 0.00 0.00 40.58 4.70
986 1016 2.345641 GTGAACATCGGATGTCTTGTCG 59.654 50.000 22.85 0.00 44.07 4.35
987 1017 3.325870 TGTGAACATCGGATGTCTTGTC 58.674 45.455 22.85 16.64 44.07 3.18
988 1018 3.006859 TCTGTGAACATCGGATGTCTTGT 59.993 43.478 22.85 8.35 44.07 3.16
989 1019 3.588955 TCTGTGAACATCGGATGTCTTG 58.411 45.455 22.85 12.03 44.07 3.02
990 1020 3.961480 TCTGTGAACATCGGATGTCTT 57.039 42.857 22.85 9.45 44.07 3.01
991 1021 3.961480 TTCTGTGAACATCGGATGTCT 57.039 42.857 22.85 13.41 44.07 3.41
1074 1109 0.672889 TTTGCACGGCATGAACACAT 59.327 45.000 0.00 0.00 38.76 3.21
1108 1143 2.190578 CACCCTCCGATTGAGCCC 59.809 66.667 0.00 0.00 39.98 5.19
1112 1147 2.690881 CCCCCACCCTCCGATTGA 60.691 66.667 0.00 0.00 0.00 2.57
1267 1302 3.717294 GGGGTGGACGATGTGGCT 61.717 66.667 0.00 0.00 0.00 4.75
1335 1370 1.839424 AATTTGCGGAAGAGGAAGGG 58.161 50.000 0.00 0.00 0.00 3.95
1341 1376 1.729149 GCGGTGAAATTTGCGGAAGAG 60.729 52.381 0.00 0.00 0.00 2.85
1360 1395 2.015587 CTGAAGAGAAAGAGCCATGGC 58.984 52.381 30.12 30.12 42.33 4.40
1361 1396 3.269178 GACTGAAGAGAAAGAGCCATGG 58.731 50.000 7.63 7.63 0.00 3.66
1362 1397 3.269178 GGACTGAAGAGAAAGAGCCATG 58.731 50.000 0.00 0.00 0.00 3.66
1363 1398 2.909006 TGGACTGAAGAGAAAGAGCCAT 59.091 45.455 0.00 0.00 0.00 4.40
1364 1399 2.329267 TGGACTGAAGAGAAAGAGCCA 58.671 47.619 0.00 0.00 0.00 4.75
1365 1400 3.269178 CATGGACTGAAGAGAAAGAGCC 58.731 50.000 0.00 0.00 0.00 4.70
1366 1401 3.683822 CACATGGACTGAAGAGAAAGAGC 59.316 47.826 0.00 0.00 0.00 4.09
1367 1402 4.689812 CACACATGGACTGAAGAGAAAGAG 59.310 45.833 0.00 0.00 0.00 2.85
1368 1403 4.635223 CACACATGGACTGAAGAGAAAGA 58.365 43.478 0.00 0.00 0.00 2.52
1388 1423 2.094762 AATACTCCAGTGCGAACCAC 57.905 50.000 0.00 0.00 45.01 4.16
1389 1424 2.422597 CAAATACTCCAGTGCGAACCA 58.577 47.619 0.00 0.00 0.00 3.67
1390 1425 1.737793 CCAAATACTCCAGTGCGAACC 59.262 52.381 0.00 0.00 0.00 3.62
1391 1426 2.695359 TCCAAATACTCCAGTGCGAAC 58.305 47.619 0.00 0.00 0.00 3.95
1392 1427 3.410631 TTCCAAATACTCCAGTGCGAA 57.589 42.857 0.00 0.00 0.00 4.70
1393 1428 3.410631 TTTCCAAATACTCCAGTGCGA 57.589 42.857 0.00 0.00 0.00 5.10
1394 1429 3.252215 TGTTTTCCAAATACTCCAGTGCG 59.748 43.478 0.00 0.00 0.00 5.34
1395 1430 4.846779 TGTTTTCCAAATACTCCAGTGC 57.153 40.909 0.00 0.00 0.00 4.40
1408 1443 4.202295 TGCAGCCACATAATTTGTTTTCCA 60.202 37.500 0.00 0.00 36.00 3.53
1412 1447 5.996513 TGATTTGCAGCCACATAATTTGTTT 59.003 32.000 0.00 0.00 36.00 2.83
1417 1452 5.047164 TGTTCTGATTTGCAGCCACATAATT 60.047 36.000 0.00 0.00 44.52 1.40
1418 1453 4.463539 TGTTCTGATTTGCAGCCACATAAT 59.536 37.500 0.00 0.00 44.52 1.28
1429 1464 9.801714 CATTCAACTTTTAATGTTCTGATTTGC 57.198 29.630 0.00 0.00 0.00 3.68
1439 1474 5.466393 GCCTGCAACATTCAACTTTTAATGT 59.534 36.000 0.00 0.00 45.75 2.71
1440 1475 5.697633 AGCCTGCAACATTCAACTTTTAATG 59.302 36.000 0.00 0.00 38.71 1.90
1445 1480 3.132646 TGAAGCCTGCAACATTCAACTTT 59.867 39.130 5.03 0.00 0.00 2.66
1446 1481 2.694628 TGAAGCCTGCAACATTCAACTT 59.305 40.909 5.03 0.00 0.00 2.66
1469 1504 2.489722 GTGAACCAAGATTCTCCAAGGC 59.510 50.000 0.00 0.00 0.00 4.35
1470 1505 3.754965 TGTGAACCAAGATTCTCCAAGG 58.245 45.455 0.00 0.00 0.00 3.61
1471 1506 5.972107 AATGTGAACCAAGATTCTCCAAG 57.028 39.130 0.00 0.00 0.00 3.61
1472 1507 6.070656 AGAAATGTGAACCAAGATTCTCCAA 58.929 36.000 0.00 0.00 0.00 3.53
1473 1508 5.634118 AGAAATGTGAACCAAGATTCTCCA 58.366 37.500 0.00 0.00 0.00 3.86
1474 1509 5.942826 AGAGAAATGTGAACCAAGATTCTCC 59.057 40.000 8.53 0.00 39.59 3.71
1475 1510 6.652481 TGAGAGAAATGTGAACCAAGATTCTC 59.348 38.462 0.00 0.00 39.34 2.87
1476 1511 6.537355 TGAGAGAAATGTGAACCAAGATTCT 58.463 36.000 0.00 0.00 31.28 2.40
1477 1512 6.808008 TGAGAGAAATGTGAACCAAGATTC 57.192 37.500 0.00 0.00 0.00 2.52
1478 1513 6.349944 GCATGAGAGAAATGTGAACCAAGATT 60.350 38.462 0.00 0.00 0.00 2.40
1479 1514 5.125097 GCATGAGAGAAATGTGAACCAAGAT 59.875 40.000 0.00 0.00 0.00 2.40
1480 1515 4.456911 GCATGAGAGAAATGTGAACCAAGA 59.543 41.667 0.00 0.00 0.00 3.02
1481 1516 4.216902 TGCATGAGAGAAATGTGAACCAAG 59.783 41.667 0.00 0.00 0.00 3.61
1482 1517 4.143543 TGCATGAGAGAAATGTGAACCAA 58.856 39.130 0.00 0.00 0.00 3.67
1483 1518 3.753815 TGCATGAGAGAAATGTGAACCA 58.246 40.909 0.00 0.00 0.00 3.67
1484 1519 4.157289 ACATGCATGAGAGAAATGTGAACC 59.843 41.667 32.75 0.00 30.53 3.62
1495 1530 3.504906 ACTGGTTCAAACATGCATGAGAG 59.495 43.478 32.75 19.63 0.00 3.20
1510 1545 4.879598 TCGTCCTTTTCTAGAACTGGTTC 58.120 43.478 17.56 5.43 39.78 3.62
1516 1551 5.751990 TGAGTTGTTCGTCCTTTTCTAGAAC 59.248 40.000 4.18 0.00 40.90 3.01
1523 1664 5.961272 ACAATTTGAGTTGTTCGTCCTTTT 58.039 33.333 2.79 0.00 39.15 2.27
1564 1705 0.681733 AGCTGCATTCCCGTCGATAT 59.318 50.000 1.02 0.00 0.00 1.63
1590 1731 2.926838 CCAAAACAAAACCACGAACCAG 59.073 45.455 0.00 0.00 0.00 4.00
1807 1948 7.389884 GGATTGTATATGATGCAGAATGTGTCT 59.610 37.037 0.00 0.00 39.31 3.41
1814 1955 5.012046 AGGTCGGATTGTATATGATGCAGAA 59.988 40.000 0.00 0.00 0.00 3.02
1823 1964 4.338682 GGCGATAGAGGTCGGATTGTATAT 59.661 45.833 0.00 0.00 41.72 0.86
1834 1975 1.179814 ACCGGATGGCGATAGAGGTC 61.180 60.000 9.46 0.00 39.70 3.85
1843 1984 0.179056 AGGAATGTTACCGGATGGCG 60.179 55.000 9.46 0.00 39.70 5.69
1847 1988 4.468510 TGTAAGACAGGAATGTTACCGGAT 59.531 41.667 9.46 0.00 29.41 4.18
1856 1997 6.668541 ATTCGAACATGTAAGACAGGAATG 57.331 37.500 0.00 0.00 33.56 2.67
1884 2025 8.902806 TGCAGTTCAAGTTCCAATTATTATAGG 58.097 33.333 0.00 0.00 0.00 2.57
1885 2026 9.941664 CTGCAGTTCAAGTTCCAATTATTATAG 57.058 33.333 5.25 0.00 0.00 1.31
1886 2027 8.405531 GCTGCAGTTCAAGTTCCAATTATTATA 58.594 33.333 16.64 0.00 0.00 0.98
1887 2028 7.093814 TGCTGCAGTTCAAGTTCCAATTATTAT 60.094 33.333 16.64 0.00 0.00 1.28
1890 2031 4.523943 TGCTGCAGTTCAAGTTCCAATTAT 59.476 37.500 16.64 0.00 0.00 1.28
1891 2032 3.888323 TGCTGCAGTTCAAGTTCCAATTA 59.112 39.130 16.64 0.00 0.00 1.40
1946 2089 6.325028 AGAAGCAAATATCTGCAGTACTAGGA 59.675 38.462 14.67 0.00 45.18 2.94
1948 2091 6.362016 CGAGAAGCAAATATCTGCAGTACTAG 59.638 42.308 14.67 2.20 45.18 2.57
2051 2194 7.759489 ACATTAAAATAACTGAGAGCCACAA 57.241 32.000 0.00 0.00 0.00 3.33
2126 2269 8.087982 TCTCGTATCATTGCAAGGATAAATTC 57.912 34.615 29.50 18.42 33.99 2.17
2142 2285 4.926832 TGCGAATGAAAAACTCTCGTATCA 59.073 37.500 0.00 0.00 32.23 2.15
2204 2347 6.311690 TCGAACAATTATCTAAATGTGCGTCA 59.688 34.615 14.90 0.00 44.49 4.35
2450 2593 9.516314 CGAGTCTGAATCATATACAAGTACAAA 57.484 33.333 5.91 0.00 0.00 2.83
2451 2594 8.135529 CCGAGTCTGAATCATATACAAGTACAA 58.864 37.037 5.91 0.00 0.00 2.41
2464 2607 5.152623 AGAAAATCACCGAGTCTGAATCA 57.847 39.130 5.91 0.00 0.00 2.57
2504 2660 8.735315 TGTATAGTCTGAGAAAGAGTTCTTGAG 58.265 37.037 0.00 0.00 44.42 3.02
2745 2901 8.233868 TGTATGTGAAATCACTGAAAATAACCG 58.766 33.333 14.15 0.00 46.55 4.44
2788 2944 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
2789 2945 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
2790 2946 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
2791 2947 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
2792 2948 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
2793 2949 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
2794 2950 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2795 2951 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2796 2952 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2797 2953 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2802 2958 9.694137 GGTGATCTAAACGCTCTTATATTAGTT 57.306 33.333 0.00 0.00 0.00 2.24
2803 2959 8.857098 TGGTGATCTAAACGCTCTTATATTAGT 58.143 33.333 0.00 0.00 0.00 2.24
2804 2960 9.130312 GTGGTGATCTAAACGCTCTTATATTAG 57.870 37.037 0.00 0.00 0.00 1.73
2805 2961 8.857098 AGTGGTGATCTAAACGCTCTTATATTA 58.143 33.333 0.00 0.00 0.00 0.98
2806 2962 7.727181 AGTGGTGATCTAAACGCTCTTATATT 58.273 34.615 0.00 0.00 0.00 1.28
2807 2963 7.291411 AGTGGTGATCTAAACGCTCTTATAT 57.709 36.000 0.00 0.00 0.00 0.86
2808 2964 6.710597 AGTGGTGATCTAAACGCTCTTATA 57.289 37.500 0.00 0.00 0.00 0.98
2809 2965 5.599999 AGTGGTGATCTAAACGCTCTTAT 57.400 39.130 0.00 0.00 0.00 1.73
2810 2966 5.401531 AAGTGGTGATCTAAACGCTCTTA 57.598 39.130 0.00 0.00 0.00 2.10
2811 2967 3.963428 AGTGGTGATCTAAACGCTCTT 57.037 42.857 0.00 0.00 0.00 2.85
2812 2968 3.963428 AAGTGGTGATCTAAACGCTCT 57.037 42.857 0.00 0.00 0.00 4.09
2813 2969 5.169295 ACTAAAGTGGTGATCTAAACGCTC 58.831 41.667 0.00 0.00 0.00 5.03
2814 2970 5.148651 ACTAAAGTGGTGATCTAAACGCT 57.851 39.130 0.00 0.00 0.00 5.07
2815 2971 5.857822 AACTAAAGTGGTGATCTAAACGC 57.142 39.130 0.00 0.00 0.00 4.84
2816 2972 8.928270 AGATAACTAAAGTGGTGATCTAAACG 57.072 34.615 0.00 0.00 0.00 3.60
2821 2977 9.654663 GTGTTTAGATAACTAAAGTGGTGATCT 57.345 33.333 5.51 0.00 45.42 2.75
2822 2978 9.654663 AGTGTTTAGATAACTAAAGTGGTGATC 57.345 33.333 5.51 0.00 45.42 2.92
2823 2979 9.654663 GAGTGTTTAGATAACTAAAGTGGTGAT 57.345 33.333 5.51 0.00 45.42 3.06
2824 2980 8.867097 AGAGTGTTTAGATAACTAAAGTGGTGA 58.133 33.333 5.51 0.00 45.42 4.02
2825 2981 9.490379 AAGAGTGTTTAGATAACTAAAGTGGTG 57.510 33.333 5.51 0.00 45.42 4.17
2826 2982 9.490379 CAAGAGTGTTTAGATAACTAAAGTGGT 57.510 33.333 5.51 0.00 45.42 4.16
2827 2983 9.490379 ACAAGAGTGTTTAGATAACTAAAGTGG 57.510 33.333 5.51 0.00 45.42 4.00
2842 2998 9.490379 CCTCTGTAAACTAATACAAGAGTGTTT 57.510 33.333 0.00 0.00 39.30 2.83
2843 2999 8.867097 TCCTCTGTAAACTAATACAAGAGTGTT 58.133 33.333 0.00 0.00 39.30 3.32
2844 3000 8.418597 TCCTCTGTAAACTAATACAAGAGTGT 57.581 34.615 0.00 0.00 42.09 3.55
2845 3001 9.360093 CTTCCTCTGTAAACTAATACAAGAGTG 57.640 37.037 0.00 0.00 35.48 3.51
2846 3002 9.091220 ACTTCCTCTGTAAACTAATACAAGAGT 57.909 33.333 0.00 0.00 35.48 3.24
3143 3303 4.130118 CTGCAAACTCCCTATCCATGTAC 58.870 47.826 0.00 0.00 0.00 2.90
3482 3659 0.317854 GTTGCCGAGCCTTTCACAAC 60.318 55.000 0.00 0.00 36.17 3.32
3767 4018 5.104374 ACAGTGTTTGTGAAATCTGCAAAG 58.896 37.500 0.00 0.00 38.99 2.77
3816 4067 2.294233 TGCTGAACATCCTTTGAACAGC 59.706 45.455 0.00 0.00 46.73 4.40
4147 4955 2.564062 CACTGACCAAATTCCAGGCAAT 59.436 45.455 0.00 0.00 32.52 3.56
4153 4961 1.203001 GGACCCACTGACCAAATTCCA 60.203 52.381 0.00 0.00 0.00 3.53
4154 4962 1.075536 AGGACCCACTGACCAAATTCC 59.924 52.381 0.00 0.00 0.00 3.01
4443 5510 9.008965 TGGTGCCAAATACATGTGATATATAAC 57.991 33.333 9.11 0.00 0.00 1.89
4615 5685 2.896685 CCTGCACCCATTAACTTGGAAA 59.103 45.455 0.00 0.00 39.25 3.13
5192 6312 6.263842 CCAGATAGCAAATCCTTAGCAATTCA 59.736 38.462 0.00 0.00 0.00 2.57
5513 6679 1.073897 GCCACTCTATCATGCCCCC 59.926 63.158 0.00 0.00 0.00 5.40
5545 6711 0.478072 TTCAGCTTGGCTCCTTTGGA 59.522 50.000 0.00 0.00 36.40 3.53
5701 6867 4.322725 CGCCATTATATACAAGCCCTCTGA 60.323 45.833 0.00 0.00 0.00 3.27
6114 7339 1.541147 CCTCTTTTCGCTTGGCATCAA 59.459 47.619 0.00 0.00 0.00 2.57
6163 7388 2.941720 GGCTGACCTGATGAGTTCATTC 59.058 50.000 0.00 0.00 36.57 2.67
6348 7585 3.782889 ACCTGACAGAAAAGTTGCAAC 57.217 42.857 22.17 22.17 0.00 4.17
6397 7656 3.097614 ACCAGTATAGCAGAAAGTCGGT 58.902 45.455 0.00 0.00 0.00 4.69
6623 7885 3.676049 GCATCCATGGCAATAGCATGATG 60.676 47.826 6.96 2.52 44.61 3.07
6788 8051 1.174712 GCAGCCTGAAGAACAAGCCA 61.175 55.000 0.00 0.00 36.69 4.75
6814 8077 4.327982 AGACTATCATCCAACCATGTCG 57.672 45.455 0.00 0.00 0.00 4.35
6848 8124 2.953648 TCATACGAGCCGAATACAAGGA 59.046 45.455 1.50 0.00 0.00 3.36
6897 8175 3.075884 GACACGGTTAATTAAGGTGGCA 58.924 45.455 21.80 0.00 36.64 4.92
6901 8179 6.596497 CCATACAAGACACGGTTAATTAAGGT 59.404 38.462 0.00 0.00 0.00 3.50
6917 8195 8.620416 CGGATTTAATGATGAAACCATACAAGA 58.380 33.333 0.00 0.00 0.00 3.02
6919 8197 8.287439 ACGGATTTAATGATGAAACCATACAA 57.713 30.769 0.00 0.00 0.00 2.41
6942 8220 5.098893 AGTTTTGAAGATCTCATCGAGACG 58.901 41.667 0.00 0.00 41.76 4.18
6947 8225 6.644592 GGGATCTAGTTTTGAAGATCTCATCG 59.355 42.308 11.05 0.00 37.98 3.84
6950 8228 6.874278 TGGGATCTAGTTTTGAAGATCTCA 57.126 37.500 10.15 10.15 43.51 3.27
6967 8245 6.867662 AAGTCGTCAAATCAATATGGGATC 57.132 37.500 0.00 0.00 0.00 3.36
7017 8295 5.106830 ACGCTATGGCAACTTTAGTGTAAAC 60.107 40.000 9.63 0.00 41.61 2.01
7033 8311 5.263185 GCAACATTAGTGTAAACGCTATGG 58.737 41.667 4.35 3.23 38.57 2.74
7173 8451 9.635404 ATTGCCATGATCCATGAATTAAATTTT 57.365 25.926 8.38 0.00 43.81 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.