Multiple sequence alignment - TraesCS7A01G198800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G198800 chr7A 100.000 2519 0 0 1 2519 161278888 161281406 0.000000e+00 4652.0
1 TraesCS7A01G198800 chr7A 88.465 1153 74 34 543 1663 161650174 161651299 0.000000e+00 1338.0
2 TraesCS7A01G198800 chr7A 96.358 659 24 0 1861 2519 136924299 136923641 0.000000e+00 1085.0
3 TraesCS7A01G198800 chr7A 96.212 660 23 1 1860 2517 61320366 61319707 0.000000e+00 1079.0
4 TraesCS7A01G198800 chr7A 91.489 141 10 2 1722 1861 161295816 161295677 2.560000e-45 193.0
5 TraesCS7A01G198800 chr7D 92.761 1340 72 14 336 1663 160487039 160488365 0.000000e+00 1914.0
6 TraesCS7A01G198800 chr7D 88.579 1147 77 27 541 1663 160533705 160534821 0.000000e+00 1343.0
7 TraesCS7A01G198800 chr7B 91.691 1348 67 14 336 1663 121052858 121054180 0.000000e+00 1827.0
8 TraesCS7A01G198800 chr7B 89.239 1366 67 33 336 1663 121241887 121243210 0.000000e+00 1635.0
9 TraesCS7A01G198800 chr7B 88.791 1365 75 32 336 1663 121320131 121321454 0.000000e+00 1602.0
10 TraesCS7A01G198800 chr7B 88.384 1145 82 31 541 1663 121495584 121496699 0.000000e+00 1330.0
11 TraesCS7A01G198800 chr7B 93.742 799 29 8 873 1660 121115422 121116210 0.000000e+00 1179.0
12 TraesCS7A01G198800 chr7B 93.742 799 29 8 873 1660 121166748 121167536 0.000000e+00 1179.0
13 TraesCS7A01G198800 chr7B 89.545 440 32 5 336 771 121113481 121113910 1.700000e-151 545.0
14 TraesCS7A01G198800 chr7B 89.091 440 34 5 336 771 121164837 121165266 3.690000e-148 534.0
15 TraesCS7A01G198800 chr3A 96.515 660 22 1 1861 2519 116085080 116085739 0.000000e+00 1090.0
16 TraesCS7A01G198800 chr3A 96.510 659 21 2 1861 2519 456616872 456617528 0.000000e+00 1088.0
17 TraesCS7A01G198800 chr3A 96.358 659 22 2 1861 2519 723979120 723979776 0.000000e+00 1083.0
18 TraesCS7A01G198800 chr3A 97.024 336 7 3 1 334 610445775 610446109 1.690000e-156 562.0
19 TraesCS7A01G198800 chr3A 95.000 140 7 0 1722 1861 687680100 687679961 1.170000e-53 220.0
20 TraesCS7A01G198800 chr3A 94.340 53 3 0 1721 1773 687678464 687678516 5.780000e-12 82.4
21 TraesCS7A01G198800 chr5A 96.510 659 21 2 1861 2519 703922204 703922860 0.000000e+00 1088.0
22 TraesCS7A01G198800 chr5A 96.229 663 22 1 1860 2519 103472794 103472132 0.000000e+00 1083.0
23 TraesCS7A01G198800 chr5A 97.006 334 8 2 1 334 576290327 576289996 6.090000e-156 560.0
24 TraesCS7A01G198800 chr4A 96.510 659 21 2 1861 2519 574352595 574353251 0.000000e+00 1088.0
25 TraesCS7A01G198800 chr2A 95.946 666 27 0 1854 2519 762526622 762527287 0.000000e+00 1081.0
26 TraesCS7A01G198800 chr6B 97.305 334 8 1 1 334 688742367 688742699 1.310000e-157 566.0
27 TraesCS7A01G198800 chr6A 97.583 331 7 1 1 331 38414209 38413880 1.310000e-157 566.0
28 TraesCS7A01G198800 chr6A 96.697 333 10 1 1 333 3651163 3651494 1.020000e-153 553.0
29 TraesCS7A01G198800 chr5B 97.006 334 9 1 1 334 16412166 16412498 6.090000e-156 560.0
30 TraesCS7A01G198800 chr1A 96.471 340 10 2 1 340 28899157 28898820 6.090000e-156 560.0
31 TraesCS7A01G198800 chr1A 95.714 140 6 0 1722 1861 299722850 299722989 2.520000e-55 226.0
32 TraesCS7A01G198800 chrUn 96.450 338 10 2 1 338 15730666 15730331 7.870000e-155 556.0
33 TraesCS7A01G198800 chrUn 96.450 338 10 2 1 338 424592626 424592961 7.870000e-155 556.0
34 TraesCS7A01G198800 chr1D 85.217 115 11 2 1722 1830 213342459 213342573 2.050000e-21 113.0
35 TraesCS7A01G198800 chr1B 83.065 124 19 2 1723 1845 60488525 60488647 7.370000e-21 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G198800 chr7A 161278888 161281406 2518 False 4652.0 4652 100.0000 1 2519 1 chr7A.!!$F1 2518
1 TraesCS7A01G198800 chr7A 161650174 161651299 1125 False 1338.0 1338 88.4650 543 1663 1 chr7A.!!$F2 1120
2 TraesCS7A01G198800 chr7A 136923641 136924299 658 True 1085.0 1085 96.3580 1861 2519 1 chr7A.!!$R2 658
3 TraesCS7A01G198800 chr7A 61319707 61320366 659 True 1079.0 1079 96.2120 1860 2517 1 chr7A.!!$R1 657
4 TraesCS7A01G198800 chr7D 160487039 160488365 1326 False 1914.0 1914 92.7610 336 1663 1 chr7D.!!$F1 1327
5 TraesCS7A01G198800 chr7D 160533705 160534821 1116 False 1343.0 1343 88.5790 541 1663 1 chr7D.!!$F2 1122
6 TraesCS7A01G198800 chr7B 121052858 121054180 1322 False 1827.0 1827 91.6910 336 1663 1 chr7B.!!$F1 1327
7 TraesCS7A01G198800 chr7B 121241887 121243210 1323 False 1635.0 1635 89.2390 336 1663 1 chr7B.!!$F2 1327
8 TraesCS7A01G198800 chr7B 121320131 121321454 1323 False 1602.0 1602 88.7910 336 1663 1 chr7B.!!$F3 1327
9 TraesCS7A01G198800 chr7B 121495584 121496699 1115 False 1330.0 1330 88.3840 541 1663 1 chr7B.!!$F4 1122
10 TraesCS7A01G198800 chr7B 121113481 121116210 2729 False 862.0 1179 91.6435 336 1660 2 chr7B.!!$F5 1324
11 TraesCS7A01G198800 chr7B 121164837 121167536 2699 False 856.5 1179 91.4165 336 1660 2 chr7B.!!$F6 1324
12 TraesCS7A01G198800 chr3A 116085080 116085739 659 False 1090.0 1090 96.5150 1861 2519 1 chr3A.!!$F1 658
13 TraesCS7A01G198800 chr3A 456616872 456617528 656 False 1088.0 1088 96.5100 1861 2519 1 chr3A.!!$F2 658
14 TraesCS7A01G198800 chr3A 723979120 723979776 656 False 1083.0 1083 96.3580 1861 2519 1 chr3A.!!$F5 658
15 TraesCS7A01G198800 chr5A 703922204 703922860 656 False 1088.0 1088 96.5100 1861 2519 1 chr5A.!!$F1 658
16 TraesCS7A01G198800 chr5A 103472132 103472794 662 True 1083.0 1083 96.2290 1860 2519 1 chr5A.!!$R1 659
17 TraesCS7A01G198800 chr4A 574352595 574353251 656 False 1088.0 1088 96.5100 1861 2519 1 chr4A.!!$F1 658
18 TraesCS7A01G198800 chr2A 762526622 762527287 665 False 1081.0 1081 95.9460 1854 2519 1 chr2A.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
136 137 0.039618 ATGGATGGCGGTTTGACCTT 59.96 50.0 0.0 0.0 35.66 3.5 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1677 3178 0.031857 CCGCATGGCTGTGTTCAAAA 59.968 50.0 0.0 0.0 0.0 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.721625 TATATGCTCGCGATGGCTC 57.278 52.632 19.39 4.14 36.88 4.70
19 20 0.173481 TATATGCTCGCGATGGCTCC 59.827 55.000 19.39 1.81 36.88 4.70
20 21 2.825726 ATATGCTCGCGATGGCTCCG 62.826 60.000 19.39 3.52 36.88 4.63
22 23 4.266070 GCTCGCGATGGCTCCGTA 62.266 66.667 10.36 0.00 36.88 4.02
23 24 2.645567 CTCGCGATGGCTCCGTAT 59.354 61.111 10.36 0.00 36.88 3.06
24 25 1.730902 CTCGCGATGGCTCCGTATG 60.731 63.158 10.36 0.00 36.88 2.39
25 26 2.027605 CGCGATGGCTCCGTATGT 59.972 61.111 0.00 0.00 36.88 2.29
26 27 2.302952 CGCGATGGCTCCGTATGTG 61.303 63.158 0.00 0.00 36.88 3.21
27 28 1.956170 GCGATGGCTCCGTATGTGG 60.956 63.158 0.00 0.00 35.83 4.17
28 29 1.441729 CGATGGCTCCGTATGTGGT 59.558 57.895 0.00 0.00 0.00 4.16
29 30 0.597637 CGATGGCTCCGTATGTGGTC 60.598 60.000 0.00 0.00 0.00 4.02
30 31 0.753262 GATGGCTCCGTATGTGGTCT 59.247 55.000 0.00 0.00 0.00 3.85
31 32 1.961394 GATGGCTCCGTATGTGGTCTA 59.039 52.381 0.00 0.00 0.00 2.59
32 33 2.082140 TGGCTCCGTATGTGGTCTAT 57.918 50.000 0.00 0.00 0.00 1.98
33 34 1.961394 TGGCTCCGTATGTGGTCTATC 59.039 52.381 0.00 0.00 0.00 2.08
34 35 1.272769 GGCTCCGTATGTGGTCTATCC 59.727 57.143 0.00 0.00 0.00 2.59
35 36 2.240279 GCTCCGTATGTGGTCTATCCT 58.760 52.381 0.00 0.00 37.07 3.24
36 37 2.029828 GCTCCGTATGTGGTCTATCCTG 60.030 54.545 0.00 0.00 37.07 3.86
37 38 1.961394 TCCGTATGTGGTCTATCCTGC 59.039 52.381 0.00 0.00 37.07 4.85
38 39 1.686587 CCGTATGTGGTCTATCCTGCA 59.313 52.381 0.00 0.00 37.07 4.41
39 40 2.288457 CCGTATGTGGTCTATCCTGCAG 60.288 54.545 6.78 6.78 37.07 4.41
40 41 2.623416 CGTATGTGGTCTATCCTGCAGA 59.377 50.000 17.39 1.21 37.07 4.26
41 42 3.304996 CGTATGTGGTCTATCCTGCAGAG 60.305 52.174 17.39 4.72 37.07 3.35
42 43 1.489481 TGTGGTCTATCCTGCAGAGG 58.511 55.000 17.39 0.00 41.39 3.69
43 44 0.105778 GTGGTCTATCCTGCAGAGGC 59.894 60.000 17.39 6.07 39.57 4.70
44 45 1.050988 TGGTCTATCCTGCAGAGGCC 61.051 60.000 17.39 16.45 39.57 5.19
45 46 1.365633 GTCTATCCTGCAGAGGCCG 59.634 63.158 17.39 0.00 39.57 6.13
46 47 1.834378 TCTATCCTGCAGAGGCCGG 60.834 63.158 17.39 0.00 44.99 6.13
81 82 3.485463 TTTATGATGGCTTCTACCCGG 57.515 47.619 0.00 0.00 0.00 5.73
82 83 2.097110 TATGATGGCTTCTACCCGGT 57.903 50.000 0.00 0.00 0.00 5.28
83 84 1.213296 ATGATGGCTTCTACCCGGTT 58.787 50.000 0.00 0.00 0.00 4.44
84 85 0.251916 TGATGGCTTCTACCCGGTTG 59.748 55.000 0.00 0.00 0.00 3.77
85 86 0.463833 GATGGCTTCTACCCGGTTGG 60.464 60.000 0.00 0.00 41.37 3.77
86 87 0.912487 ATGGCTTCTACCCGGTTGGA 60.912 55.000 0.00 0.00 37.49 3.53
87 88 1.221021 GGCTTCTACCCGGTTGGAG 59.779 63.158 0.00 3.04 37.49 3.86
88 89 1.551019 GGCTTCTACCCGGTTGGAGT 61.551 60.000 8.86 0.00 37.49 3.85
89 90 0.391263 GCTTCTACCCGGTTGGAGTG 60.391 60.000 8.86 0.00 37.49 3.51
90 91 0.391263 CTTCTACCCGGTTGGAGTGC 60.391 60.000 0.00 0.00 37.49 4.40
91 92 0.834687 TTCTACCCGGTTGGAGTGCT 60.835 55.000 0.00 0.00 37.49 4.40
92 93 1.218316 CTACCCGGTTGGAGTGCTC 59.782 63.158 0.00 0.00 37.49 4.26
93 94 2.558554 CTACCCGGTTGGAGTGCTCG 62.559 65.000 0.00 0.00 37.49 5.03
94 95 4.760047 CCCGGTTGGAGTGCTCGG 62.760 72.222 0.00 0.00 40.32 4.63
97 98 4.329545 GGTTGGAGTGCTCGGCCA 62.330 66.667 2.24 0.18 0.00 5.36
98 99 2.743928 GTTGGAGTGCTCGGCCAG 60.744 66.667 2.24 0.00 32.47 4.85
99 100 4.020617 TTGGAGTGCTCGGCCAGG 62.021 66.667 2.24 0.00 32.47 4.45
102 103 4.459089 GAGTGCTCGGCCAGGGAC 62.459 72.222 2.24 5.98 0.00 4.46
104 105 4.101448 GTGCTCGGCCAGGGACAT 62.101 66.667 2.24 0.00 0.00 3.06
105 106 3.329889 TGCTCGGCCAGGGACATT 61.330 61.111 2.24 0.00 0.00 2.71
106 107 2.044946 GCTCGGCCAGGGACATTT 60.045 61.111 2.24 0.00 0.00 2.32
107 108 1.678970 GCTCGGCCAGGGACATTTT 60.679 57.895 2.24 0.00 0.00 1.82
108 109 1.250840 GCTCGGCCAGGGACATTTTT 61.251 55.000 2.24 0.00 0.00 1.94
125 126 1.872773 TTTTTACCCCCATGGATGGC 58.127 50.000 15.22 0.00 46.70 4.40
126 127 0.396417 TTTTACCCCCATGGATGGCG 60.396 55.000 15.22 3.79 46.70 5.69
129 130 4.141876 CCCCCATGGATGGCGGTT 62.142 66.667 15.22 0.00 46.70 4.44
130 131 2.043046 CCCCATGGATGGCGGTTT 60.043 61.111 15.22 0.00 46.70 3.27
131 132 2.425569 CCCCATGGATGGCGGTTTG 61.426 63.158 15.22 0.00 46.70 2.93
132 133 1.379710 CCCATGGATGGCGGTTTGA 60.380 57.895 15.22 0.00 46.70 2.69
133 134 1.666209 CCCATGGATGGCGGTTTGAC 61.666 60.000 15.22 0.00 46.70 3.18
134 135 1.666209 CCATGGATGGCGGTTTGACC 61.666 60.000 5.56 0.00 41.75 4.02
135 136 0.680921 CATGGATGGCGGTTTGACCT 60.681 55.000 0.00 0.00 35.66 3.85
136 137 0.039618 ATGGATGGCGGTTTGACCTT 59.960 50.000 0.00 0.00 35.66 3.50
137 138 0.608035 TGGATGGCGGTTTGACCTTC 60.608 55.000 0.00 0.00 35.66 3.46
138 139 1.644786 GGATGGCGGTTTGACCTTCG 61.645 60.000 0.00 0.00 35.66 3.79
139 140 1.644786 GATGGCGGTTTGACCTTCGG 61.645 60.000 0.00 0.00 35.66 4.30
140 141 2.031465 GGCGGTTTGACCTTCGGA 59.969 61.111 0.00 0.00 35.66 4.55
141 142 1.376812 GGCGGTTTGACCTTCGGAT 60.377 57.895 0.00 0.00 35.66 4.18
142 143 0.958876 GGCGGTTTGACCTTCGGATT 60.959 55.000 0.00 0.00 35.66 3.01
143 144 0.168128 GCGGTTTGACCTTCGGATTG 59.832 55.000 0.00 0.00 35.66 2.67
144 145 0.802494 CGGTTTGACCTTCGGATTGG 59.198 55.000 0.00 0.00 35.66 3.16
145 146 1.609580 CGGTTTGACCTTCGGATTGGA 60.610 52.381 4.84 0.00 35.66 3.53
146 147 1.810755 GGTTTGACCTTCGGATTGGAC 59.189 52.381 4.84 0.17 34.73 4.02
147 148 1.810755 GTTTGACCTTCGGATTGGACC 59.189 52.381 4.84 0.00 0.00 4.46
155 156 3.827634 GGATTGGACCGGCATCAC 58.172 61.111 0.00 0.00 0.00 3.06
156 157 1.823899 GGATTGGACCGGCATCACC 60.824 63.158 0.00 0.00 0.00 4.02
157 158 1.224592 GATTGGACCGGCATCACCT 59.775 57.895 0.00 0.00 35.61 4.00
158 159 0.394352 GATTGGACCGGCATCACCTT 60.394 55.000 0.00 0.00 35.61 3.50
159 160 0.916086 ATTGGACCGGCATCACCTTA 59.084 50.000 0.00 0.00 35.61 2.69
160 161 0.251916 TTGGACCGGCATCACCTTAG 59.748 55.000 0.00 0.00 35.61 2.18
161 162 1.146263 GGACCGGCATCACCTTAGG 59.854 63.158 0.00 0.00 35.61 2.69
162 163 1.523938 GACCGGCATCACCTTAGGC 60.524 63.158 0.00 0.00 35.61 3.93
163 164 2.203209 CCGGCATCACCTTAGGCC 60.203 66.667 0.00 0.00 42.88 5.19
164 165 2.746375 CCGGCATCACCTTAGGCCT 61.746 63.158 11.78 11.78 44.13 5.19
165 166 1.227674 CGGCATCACCTTAGGCCTC 60.228 63.158 9.68 0.00 44.13 4.70
166 167 1.690219 CGGCATCACCTTAGGCCTCT 61.690 60.000 9.68 0.00 44.13 3.69
167 168 0.548510 GGCATCACCTTAGGCCTCTT 59.451 55.000 9.68 0.00 43.00 2.85
168 169 1.064389 GGCATCACCTTAGGCCTCTTT 60.064 52.381 9.68 0.00 43.00 2.52
169 170 2.621668 GGCATCACCTTAGGCCTCTTTT 60.622 50.000 9.68 0.00 43.00 2.27
170 171 3.371595 GGCATCACCTTAGGCCTCTTTTA 60.372 47.826 9.68 0.00 43.00 1.52
171 172 4.464947 GCATCACCTTAGGCCTCTTTTAT 58.535 43.478 9.68 0.00 0.00 1.40
172 173 4.517075 GCATCACCTTAGGCCTCTTTTATC 59.483 45.833 9.68 0.00 0.00 1.75
173 174 5.688766 GCATCACCTTAGGCCTCTTTTATCT 60.689 44.000 9.68 0.00 0.00 1.98
174 175 6.360618 CATCACCTTAGGCCTCTTTTATCTT 58.639 40.000 9.68 0.00 0.00 2.40
175 176 6.388619 TCACCTTAGGCCTCTTTTATCTTT 57.611 37.500 9.68 0.00 0.00 2.52
176 177 6.790319 TCACCTTAGGCCTCTTTTATCTTTT 58.210 36.000 9.68 0.00 0.00 2.27
177 178 7.238710 TCACCTTAGGCCTCTTTTATCTTTTT 58.761 34.615 9.68 0.00 0.00 1.94
193 194 1.301423 TTTTTCGTTACTGCTGGCGT 58.699 45.000 0.00 0.00 0.00 5.68
194 195 1.301423 TTTTCGTTACTGCTGGCGTT 58.699 45.000 0.00 0.00 0.00 4.84
195 196 1.301423 TTTCGTTACTGCTGGCGTTT 58.699 45.000 0.00 0.00 0.00 3.60
196 197 1.301423 TTCGTTACTGCTGGCGTTTT 58.699 45.000 0.00 0.00 0.00 2.43
197 198 1.301423 TCGTTACTGCTGGCGTTTTT 58.699 45.000 0.00 0.00 0.00 1.94
218 219 7.637631 TTTTTGCCTTTTTATTTTGGCTTCT 57.362 28.000 0.00 0.00 45.11 2.85
219 220 8.738645 TTTTTGCCTTTTTATTTTGGCTTCTA 57.261 26.923 0.00 0.00 45.11 2.10
220 221 8.738645 TTTTGCCTTTTTATTTTGGCTTCTAA 57.261 26.923 0.00 0.00 45.11 2.10
221 222 8.916628 TTTGCCTTTTTATTTTGGCTTCTAAT 57.083 26.923 0.00 0.00 45.11 1.73
223 224 8.996024 TGCCTTTTTATTTTGGCTTCTAATAC 57.004 30.769 0.00 0.00 45.11 1.89
224 225 8.811994 TGCCTTTTTATTTTGGCTTCTAATACT 58.188 29.630 0.00 0.00 45.11 2.12
225 226 9.653287 GCCTTTTTATTTTGGCTTCTAATACTT 57.347 29.630 0.00 0.00 41.92 2.24
235 236 9.959749 TTTGGCTTCTAATACTTTGTAACTTTG 57.040 29.630 0.00 0.00 0.00 2.77
236 237 8.106247 TGGCTTCTAATACTTTGTAACTTTGG 57.894 34.615 0.00 0.00 0.00 3.28
237 238 7.027760 GGCTTCTAATACTTTGTAACTTTGGC 58.972 38.462 0.00 0.00 0.00 4.52
238 239 7.094334 GGCTTCTAATACTTTGTAACTTTGGCT 60.094 37.037 0.00 0.00 0.00 4.75
239 240 7.750903 GCTTCTAATACTTTGTAACTTTGGCTG 59.249 37.037 0.00 0.00 0.00 4.85
240 241 8.685838 TTCTAATACTTTGTAACTTTGGCTGT 57.314 30.769 0.00 0.00 0.00 4.40
241 242 8.094798 TCTAATACTTTGTAACTTTGGCTGTG 57.905 34.615 0.00 0.00 0.00 3.66
242 243 6.709018 AATACTTTGTAACTTTGGCTGTGT 57.291 33.333 0.00 0.00 0.00 3.72
243 244 4.370364 ACTTTGTAACTTTGGCTGTGTG 57.630 40.909 0.00 0.00 0.00 3.82
244 245 2.861462 TTGTAACTTTGGCTGTGTGC 57.139 45.000 0.00 0.00 41.94 4.57
245 246 1.756430 TGTAACTTTGGCTGTGTGCA 58.244 45.000 0.00 0.00 45.15 4.57
246 247 2.305928 TGTAACTTTGGCTGTGTGCAT 58.694 42.857 0.00 0.00 45.15 3.96
247 248 2.293122 TGTAACTTTGGCTGTGTGCATC 59.707 45.455 0.00 0.00 45.15 3.91
248 249 1.696063 AACTTTGGCTGTGTGCATCT 58.304 45.000 0.00 0.00 45.15 2.90
249 250 2.566833 ACTTTGGCTGTGTGCATCTA 57.433 45.000 0.00 0.00 45.15 1.98
250 251 2.430465 ACTTTGGCTGTGTGCATCTAG 58.570 47.619 0.00 0.00 45.15 2.43
251 252 1.131883 CTTTGGCTGTGTGCATCTAGC 59.868 52.381 9.68 9.68 45.15 3.42
252 253 0.325933 TTGGCTGTGTGCATCTAGCT 59.674 50.000 15.51 0.00 45.94 3.32
253 254 1.194218 TGGCTGTGTGCATCTAGCTA 58.806 50.000 15.51 9.22 45.94 3.32
254 255 1.764723 TGGCTGTGTGCATCTAGCTAT 59.235 47.619 15.51 0.00 45.94 2.97
255 256 2.141517 GGCTGTGTGCATCTAGCTATG 58.858 52.381 15.51 0.00 45.94 2.23
263 264 2.383368 CATCTAGCTATGCAGAGGCC 57.617 55.000 10.92 0.00 40.13 5.19
264 265 0.894141 ATCTAGCTATGCAGAGGCCG 59.106 55.000 10.92 0.48 40.13 6.13
265 266 1.181741 TCTAGCTATGCAGAGGCCGG 61.182 60.000 10.92 0.00 40.13 6.13
266 267 2.164865 CTAGCTATGCAGAGGCCGGG 62.165 65.000 10.92 0.00 40.13 5.73
267 268 2.946988 TAGCTATGCAGAGGCCGGGT 62.947 60.000 10.92 0.00 40.13 5.28
268 269 2.109799 CTATGCAGAGGCCGGGTG 59.890 66.667 2.18 0.00 40.13 4.61
269 270 2.364973 TATGCAGAGGCCGGGTGA 60.365 61.111 2.18 0.00 40.13 4.02
270 271 1.762522 CTATGCAGAGGCCGGGTGAT 61.763 60.000 2.18 0.00 40.13 3.06
271 272 1.758440 TATGCAGAGGCCGGGTGATC 61.758 60.000 2.18 0.00 40.13 2.92
272 273 3.474570 GCAGAGGCCGGGTGATCT 61.475 66.667 2.18 0.00 0.00 2.75
273 274 3.036429 GCAGAGGCCGGGTGATCTT 62.036 63.158 2.18 0.00 0.00 2.40
274 275 1.604378 CAGAGGCCGGGTGATCTTT 59.396 57.895 2.18 0.00 0.00 2.52
275 276 0.745845 CAGAGGCCGGGTGATCTTTG 60.746 60.000 2.18 0.00 0.00 2.77
276 277 0.909610 AGAGGCCGGGTGATCTTTGA 60.910 55.000 2.18 0.00 0.00 2.69
277 278 0.181350 GAGGCCGGGTGATCTTTGAT 59.819 55.000 2.18 0.00 0.00 2.57
278 279 0.107017 AGGCCGGGTGATCTTTGATG 60.107 55.000 2.18 0.00 0.00 3.07
279 280 1.728490 GGCCGGGTGATCTTTGATGC 61.728 60.000 2.18 0.00 0.00 3.91
280 281 2.016961 CCGGGTGATCTTTGATGCG 58.983 57.895 0.00 0.00 0.00 4.73
281 282 1.439353 CCGGGTGATCTTTGATGCGG 61.439 60.000 0.00 0.00 0.00 5.69
282 283 0.744414 CGGGTGATCTTTGATGCGGT 60.744 55.000 0.00 0.00 0.00 5.68
283 284 1.463674 GGGTGATCTTTGATGCGGTT 58.536 50.000 0.00 0.00 0.00 4.44
284 285 1.133025 GGGTGATCTTTGATGCGGTTG 59.867 52.381 0.00 0.00 0.00 3.77
285 286 1.812571 GGTGATCTTTGATGCGGTTGT 59.187 47.619 0.00 0.00 0.00 3.32
286 287 3.006940 GGTGATCTTTGATGCGGTTGTA 58.993 45.455 0.00 0.00 0.00 2.41
287 288 3.627577 GGTGATCTTTGATGCGGTTGTAT 59.372 43.478 0.00 0.00 0.00 2.29
288 289 4.260784 GGTGATCTTTGATGCGGTTGTATC 60.261 45.833 0.00 0.00 37.68 2.24
289 290 4.332543 GTGATCTTTGATGCGGTTGTATCA 59.667 41.667 0.00 0.00 44.15 2.15
294 295 2.267426 TGATGCGGTTGTATCAACTCG 58.733 47.619 11.48 13.05 43.10 4.18
295 296 2.094442 TGATGCGGTTGTATCAACTCGA 60.094 45.455 19.17 0.00 43.10 4.04
296 297 2.665649 TGCGGTTGTATCAACTCGAT 57.334 45.000 19.17 0.00 38.21 3.59
297 298 3.786516 TGCGGTTGTATCAACTCGATA 57.213 42.857 19.17 9.89 35.39 2.92
298 299 4.316205 TGCGGTTGTATCAACTCGATAT 57.684 40.909 19.17 0.00 38.85 1.63
299 300 4.689071 TGCGGTTGTATCAACTCGATATT 58.311 39.130 19.17 0.00 38.85 1.28
300 301 5.113383 TGCGGTTGTATCAACTCGATATTT 58.887 37.500 19.17 0.00 38.85 1.40
301 302 5.233476 TGCGGTTGTATCAACTCGATATTTC 59.767 40.000 19.17 7.80 38.85 2.17
302 303 5.233476 GCGGTTGTATCAACTCGATATTTCA 59.767 40.000 19.17 0.00 38.85 2.69
303 304 6.237996 GCGGTTGTATCAACTCGATATTTCAA 60.238 38.462 19.17 0.00 38.85 2.69
304 305 7.518370 GCGGTTGTATCAACTCGATATTTCAAT 60.518 37.037 19.17 0.00 38.85 2.57
305 306 8.335356 CGGTTGTATCAACTCGATATTTCAATT 58.665 33.333 11.48 0.00 38.85 2.32
306 307 9.651718 GGTTGTATCAACTCGATATTTCAATTC 57.348 33.333 11.48 0.00 38.85 2.17
318 319 9.528018 TCGATATTTCAATTCAATAAAAAGCCC 57.472 29.630 0.00 0.00 0.00 5.19
319 320 9.533253 CGATATTTCAATTCAATAAAAAGCCCT 57.467 29.630 0.00 0.00 0.00 5.19
325 326 8.925161 TCAATTCAATAAAAAGCCCTTTATCG 57.075 30.769 2.11 0.00 31.66 2.92
326 327 8.744652 TCAATTCAATAAAAAGCCCTTTATCGA 58.255 29.630 0.00 0.00 31.66 3.59
327 328 9.364989 CAATTCAATAAAAAGCCCTTTATCGAA 57.635 29.630 0.00 4.75 31.88 3.71
328 329 9.936759 AATTCAATAAAAAGCCCTTTATCGAAA 57.063 25.926 5.90 1.64 31.38 3.46
329 330 9.936759 ATTCAATAAAAAGCCCTTTATCGAAAA 57.063 25.926 5.90 0.00 31.38 2.29
330 331 9.765795 TTCAATAAAAAGCCCTTTATCGAAAAA 57.234 25.926 0.00 0.00 31.66 1.94
367 368 6.755141 TGCGATGTCTAGTGGTTTTACTATTC 59.245 38.462 0.00 0.00 33.04 1.75
378 379 9.416284 AGTGGTTTTACTATTCCTGAAAGAAAA 57.584 29.630 0.00 0.00 34.07 2.29
494 512 4.386954 CGATCTATGCATGACATACACACC 59.613 45.833 10.16 0.00 40.38 4.16
534 553 5.973565 CAGACGAAAAAGAAAATGTGAGCTT 59.026 36.000 0.00 0.00 0.00 3.74
726 758 0.109179 CGACCAATGTACGTCGGGAA 60.109 55.000 11.71 0.00 46.21 3.97
744 776 3.429822 GGGAATGCATGGAATCACTTGTG 60.430 47.826 0.00 0.00 0.00 3.33
758 790 3.007831 TCACTTGTGGTCAGATGTATGCA 59.992 43.478 0.00 0.00 0.00 3.96
787 832 9.881529 TGTACTGGAAATAAAACGAAATTGTAC 57.118 29.630 0.00 0.00 0.00 2.90
810 856 2.834549 ACCACATGTAGCTAGCAAGTCT 59.165 45.455 18.83 0.00 0.00 3.24
876 2331 5.587844 TCTTCTTGCTAGCATCCTTGAAATC 59.412 40.000 20.13 0.00 0.00 2.17
986 2452 2.704108 TCGATCTCGAGCCACCTAC 58.296 57.895 7.81 0.00 44.22 3.18
987 2453 0.180642 TCGATCTCGAGCCACCTACT 59.819 55.000 7.81 0.00 44.22 2.57
988 2454 1.415289 TCGATCTCGAGCCACCTACTA 59.585 52.381 7.81 0.00 44.22 1.82
989 2455 1.801771 CGATCTCGAGCCACCTACTAG 59.198 57.143 7.81 0.00 43.02 2.57
1083 2549 2.355837 GTCTCGGCGCAGAACACA 60.356 61.111 12.27 0.00 0.00 3.72
1190 2656 3.460144 GCAGGACTACGCGAACAC 58.540 61.111 15.93 0.85 0.00 3.32
1254 2721 1.092345 GCGAGAACATCTTCTGGGGC 61.092 60.000 0.00 0.00 36.82 5.80
1332 2799 3.497942 GGAACTACCACCTCAACACCAAT 60.498 47.826 0.00 0.00 38.79 3.16
1556 3031 6.027973 ATGTGATCATACATGCATACGTGCT 61.028 40.000 0.00 0.00 41.16 4.40
1633 3134 2.892374 ACGTACGTAAATAAGCCCACC 58.108 47.619 21.41 0.00 0.00 4.61
1663 3164 1.888215 CATGTATCCATGCGGCTCTT 58.112 50.000 0.00 0.00 41.88 2.85
1664 3165 2.224606 CATGTATCCATGCGGCTCTTT 58.775 47.619 0.00 0.00 41.88 2.52
1665 3166 2.418368 TGTATCCATGCGGCTCTTTT 57.582 45.000 0.00 0.00 0.00 2.27
1666 3167 2.722094 TGTATCCATGCGGCTCTTTTT 58.278 42.857 0.00 0.00 0.00 1.94
1695 3196 1.850377 TTTTTGAACACAGCCATGCG 58.150 45.000 0.00 0.00 0.00 4.73
1696 3197 0.031857 TTTTGAACACAGCCATGCGG 59.968 50.000 0.00 0.00 0.00 5.69
1706 3207 2.513204 CCATGCGGCTCTGTGGAG 60.513 66.667 0.00 0.00 42.18 3.86
1715 3216 3.521995 CTCTGTGGAGCGTGTGAAT 57.478 52.632 0.00 0.00 32.43 2.57
1716 3217 1.073964 CTCTGTGGAGCGTGTGAATG 58.926 55.000 0.00 0.00 32.43 2.67
1717 3218 0.392706 TCTGTGGAGCGTGTGAATGT 59.607 50.000 0.00 0.00 0.00 2.71
1718 3219 1.616374 TCTGTGGAGCGTGTGAATGTA 59.384 47.619 0.00 0.00 0.00 2.29
1719 3220 2.036604 TCTGTGGAGCGTGTGAATGTAA 59.963 45.455 0.00 0.00 0.00 2.41
1720 3221 3.002791 CTGTGGAGCGTGTGAATGTAAT 58.997 45.455 0.00 0.00 0.00 1.89
1721 3222 2.741517 TGTGGAGCGTGTGAATGTAATG 59.258 45.455 0.00 0.00 0.00 1.90
1722 3223 3.000041 GTGGAGCGTGTGAATGTAATGA 59.000 45.455 0.00 0.00 0.00 2.57
1723 3224 3.062639 GTGGAGCGTGTGAATGTAATGAG 59.937 47.826 0.00 0.00 0.00 2.90
1724 3225 3.262420 GGAGCGTGTGAATGTAATGAGT 58.738 45.455 0.00 0.00 0.00 3.41
1725 3226 3.684788 GGAGCGTGTGAATGTAATGAGTT 59.315 43.478 0.00 0.00 0.00 3.01
1726 3227 4.868171 GGAGCGTGTGAATGTAATGAGTTA 59.132 41.667 0.00 0.00 0.00 2.24
1727 3228 5.350365 GGAGCGTGTGAATGTAATGAGTTAA 59.650 40.000 0.00 0.00 0.00 2.01
1728 3229 6.037172 GGAGCGTGTGAATGTAATGAGTTAAT 59.963 38.462 0.00 0.00 0.00 1.40
1729 3230 7.377766 AGCGTGTGAATGTAATGAGTTAATT 57.622 32.000 0.00 0.00 0.00 1.40
1730 3231 7.243487 AGCGTGTGAATGTAATGAGTTAATTG 58.757 34.615 0.00 0.00 0.00 2.32
1731 3232 6.021468 GCGTGTGAATGTAATGAGTTAATTGC 60.021 38.462 0.00 0.00 0.00 3.56
1732 3233 6.192682 CGTGTGAATGTAATGAGTTAATTGCG 59.807 38.462 0.00 0.00 0.00 4.85
1733 3234 6.021468 GTGTGAATGTAATGAGTTAATTGCGC 60.021 38.462 0.00 0.00 0.00 6.09
1734 3235 6.128035 TGTGAATGTAATGAGTTAATTGCGCT 60.128 34.615 9.73 0.00 0.00 5.92
1735 3236 6.747280 GTGAATGTAATGAGTTAATTGCGCTT 59.253 34.615 9.73 0.00 0.00 4.68
1736 3237 7.273381 GTGAATGTAATGAGTTAATTGCGCTTT 59.727 33.333 9.73 5.07 0.00 3.51
1737 3238 7.812191 TGAATGTAATGAGTTAATTGCGCTTTT 59.188 29.630 9.73 4.67 0.00 2.27
1738 3239 6.926280 TGTAATGAGTTAATTGCGCTTTTG 57.074 33.333 9.73 0.00 0.00 2.44
1739 3240 5.861251 TGTAATGAGTTAATTGCGCTTTTGG 59.139 36.000 9.73 0.00 0.00 3.28
1740 3241 4.519540 ATGAGTTAATTGCGCTTTTGGT 57.480 36.364 9.73 0.00 0.00 3.67
1741 3242 5.637006 ATGAGTTAATTGCGCTTTTGGTA 57.363 34.783 9.73 0.00 0.00 3.25
1742 3243 4.789784 TGAGTTAATTGCGCTTTTGGTAC 58.210 39.130 9.73 3.27 0.00 3.34
1743 3244 4.276183 TGAGTTAATTGCGCTTTTGGTACA 59.724 37.500 9.73 0.00 0.00 2.90
1744 3245 5.048364 TGAGTTAATTGCGCTTTTGGTACAT 60.048 36.000 9.73 0.00 39.30 2.29
1745 3246 6.149640 TGAGTTAATTGCGCTTTTGGTACATA 59.850 34.615 9.73 0.00 39.30 2.29
1746 3247 6.915349 AGTTAATTGCGCTTTTGGTACATAA 58.085 32.000 9.73 0.00 39.30 1.90
1747 3248 7.371936 AGTTAATTGCGCTTTTGGTACATAAA 58.628 30.769 9.73 0.00 39.30 1.40
1748 3249 7.327518 AGTTAATTGCGCTTTTGGTACATAAAC 59.672 33.333 9.73 1.46 39.30 2.01
1749 3250 4.839668 TTGCGCTTTTGGTACATAAACT 57.160 36.364 9.73 0.00 39.30 2.66
1750 3251 4.839668 TGCGCTTTTGGTACATAAACTT 57.160 36.364 9.73 0.00 39.30 2.66
1751 3252 4.541779 TGCGCTTTTGGTACATAAACTTG 58.458 39.130 9.73 0.00 39.30 3.16
1752 3253 3.363724 GCGCTTTTGGTACATAAACTTGC 59.636 43.478 0.00 0.63 39.30 4.01
1753 3254 4.541779 CGCTTTTGGTACATAAACTTGCA 58.458 39.130 0.00 0.00 39.30 4.08
1754 3255 4.381566 CGCTTTTGGTACATAAACTTGCAC 59.618 41.667 0.00 0.00 39.30 4.57
1755 3256 4.381566 GCTTTTGGTACATAAACTTGCACG 59.618 41.667 0.00 0.00 39.30 5.34
1756 3257 5.502153 TTTTGGTACATAAACTTGCACGT 57.498 34.783 0.00 0.00 39.30 4.49
1757 3258 4.735662 TTGGTACATAAACTTGCACGTC 57.264 40.909 0.00 0.00 39.30 4.34
1758 3259 3.729966 TGGTACATAAACTTGCACGTCA 58.270 40.909 0.00 0.00 0.00 4.35
1759 3260 4.320023 TGGTACATAAACTTGCACGTCAT 58.680 39.130 0.00 0.00 0.00 3.06
1760 3261 4.153296 TGGTACATAAACTTGCACGTCATG 59.847 41.667 13.25 13.25 0.00 3.07
1761 3262 4.153475 GGTACATAAACTTGCACGTCATGT 59.847 41.667 20.23 20.23 34.90 3.21
1762 3263 5.349270 GGTACATAAACTTGCACGTCATGTA 59.651 40.000 18.80 18.80 33.32 2.29
1763 3264 5.277601 ACATAAACTTGCACGTCATGTAC 57.722 39.130 16.95 0.00 33.32 2.90
1764 3265 4.752604 ACATAAACTTGCACGTCATGTACA 59.247 37.500 16.95 0.00 33.32 2.90
1765 3266 5.237561 ACATAAACTTGCACGTCATGTACAA 59.762 36.000 16.95 0.00 32.89 2.41
1766 3267 4.624336 AAACTTGCACGTCATGTACAAA 57.376 36.364 0.00 0.00 33.51 2.83
1767 3268 4.829064 AACTTGCACGTCATGTACAAAT 57.171 36.364 0.00 0.00 33.51 2.32
1768 3269 4.829064 ACTTGCACGTCATGTACAAATT 57.171 36.364 0.00 0.00 33.51 1.82
1769 3270 4.783242 ACTTGCACGTCATGTACAAATTC 58.217 39.130 0.00 0.00 33.51 2.17
1770 3271 4.274705 ACTTGCACGTCATGTACAAATTCA 59.725 37.500 0.00 0.00 33.51 2.57
1771 3272 5.048782 ACTTGCACGTCATGTACAAATTCAT 60.049 36.000 0.00 0.00 33.51 2.57
1772 3273 6.148645 ACTTGCACGTCATGTACAAATTCATA 59.851 34.615 0.00 0.00 33.51 2.15
1773 3274 6.676237 TGCACGTCATGTACAAATTCATAT 57.324 33.333 0.00 0.00 0.00 1.78
1774 3275 7.778470 TGCACGTCATGTACAAATTCATATA 57.222 32.000 0.00 0.00 0.00 0.86
1775 3276 8.376889 TGCACGTCATGTACAAATTCATATAT 57.623 30.769 0.00 0.00 0.00 0.86
1776 3277 9.482627 TGCACGTCATGTACAAATTCATATATA 57.517 29.630 0.00 0.00 0.00 0.86
1812 3313 9.912634 AATGATACAAATTGGTCTAACAACTTG 57.087 29.630 0.69 0.69 41.71 3.16
1814 3315 8.349245 TGATACAAATTGGTCTAACAACTTGTG 58.651 33.333 15.63 0.00 46.35 3.33
1815 3316 6.524101 ACAAATTGGTCTAACAACTTGTGT 57.476 33.333 6.77 0.00 45.54 3.72
1816 3317 6.930731 ACAAATTGGTCTAACAACTTGTGTT 58.069 32.000 6.77 0.00 45.54 3.32
1825 3326 2.988570 ACAACTTGTGTTTCGGGTACA 58.011 42.857 0.00 0.00 37.01 2.90
1826 3327 3.547746 ACAACTTGTGTTTCGGGTACAT 58.452 40.909 0.00 0.00 37.01 2.29
1827 3328 3.949113 ACAACTTGTGTTTCGGGTACATT 59.051 39.130 0.00 0.00 37.01 2.71
1828 3329 4.399934 ACAACTTGTGTTTCGGGTACATTT 59.600 37.500 0.00 0.00 37.01 2.32
1829 3330 5.589452 ACAACTTGTGTTTCGGGTACATTTA 59.411 36.000 0.00 0.00 37.01 1.40
1830 3331 5.678132 ACTTGTGTTTCGGGTACATTTAC 57.322 39.130 0.00 0.00 0.00 2.01
1831 3332 4.516321 ACTTGTGTTTCGGGTACATTTACC 59.484 41.667 0.00 0.00 46.63 2.85
1832 3333 4.354893 TGTGTTTCGGGTACATTTACCT 57.645 40.909 7.96 0.00 46.56 3.08
1833 3334 5.480642 TGTGTTTCGGGTACATTTACCTA 57.519 39.130 7.96 0.00 46.56 3.08
1834 3335 5.237048 TGTGTTTCGGGTACATTTACCTAC 58.763 41.667 7.96 3.08 46.56 3.18
1835 3336 5.221601 TGTGTTTCGGGTACATTTACCTACA 60.222 40.000 7.96 5.27 46.56 2.74
1836 3337 5.876460 GTGTTTCGGGTACATTTACCTACAT 59.124 40.000 7.96 0.00 46.56 2.29
1837 3338 6.372381 GTGTTTCGGGTACATTTACCTACATT 59.628 38.462 7.96 0.00 46.56 2.71
1838 3339 6.941436 TGTTTCGGGTACATTTACCTACATTT 59.059 34.615 7.96 0.00 46.56 2.32
1839 3340 7.119553 TGTTTCGGGTACATTTACCTACATTTC 59.880 37.037 7.96 0.00 46.56 2.17
1840 3341 5.673514 TCGGGTACATTTACCTACATTTCC 58.326 41.667 7.96 0.00 46.56 3.13
1841 3342 4.508861 CGGGTACATTTACCTACATTTCCG 59.491 45.833 7.96 0.00 46.56 4.30
1842 3343 5.430886 GGGTACATTTACCTACATTTCCGT 58.569 41.667 7.96 0.00 46.56 4.69
1843 3344 5.525012 GGGTACATTTACCTACATTTCCGTC 59.475 44.000 7.96 0.00 46.56 4.79
1844 3345 6.108015 GGTACATTTACCTACATTTCCGTCA 58.892 40.000 0.49 0.00 44.24 4.35
1845 3346 6.764560 GGTACATTTACCTACATTTCCGTCAT 59.235 38.462 0.49 0.00 44.24 3.06
1846 3347 7.281549 GGTACATTTACCTACATTTCCGTCATT 59.718 37.037 0.49 0.00 44.24 2.57
1847 3348 7.083875 ACATTTACCTACATTTCCGTCATTG 57.916 36.000 0.00 0.00 0.00 2.82
1848 3349 6.882140 ACATTTACCTACATTTCCGTCATTGA 59.118 34.615 0.00 0.00 0.00 2.57
1849 3350 6.730960 TTTACCTACATTTCCGTCATTGAC 57.269 37.500 6.73 6.73 0.00 3.18
1850 3351 3.606687 ACCTACATTTCCGTCATTGACC 58.393 45.455 11.12 0.00 0.00 4.02
1851 3352 2.607635 CCTACATTTCCGTCATTGACCG 59.392 50.000 11.12 5.09 0.00 4.79
1852 3353 2.178912 ACATTTCCGTCATTGACCGT 57.821 45.000 11.12 0.00 0.00 4.83
1853 3354 2.500229 ACATTTCCGTCATTGACCGTT 58.500 42.857 11.12 0.00 0.00 4.44
1854 3355 3.666274 ACATTTCCGTCATTGACCGTTA 58.334 40.909 11.12 0.00 0.00 3.18
1855 3356 3.682858 ACATTTCCGTCATTGACCGTTAG 59.317 43.478 11.12 0.00 0.00 2.34
1856 3357 3.389925 TTTCCGTCATTGACCGTTAGT 57.610 42.857 11.12 0.00 0.00 2.24
1857 3358 2.642139 TCCGTCATTGACCGTTAGTC 57.358 50.000 11.12 0.00 46.51 2.59
1921 3422 3.433740 GCCTTTAGTCCCGATTCCTGAAT 60.434 47.826 0.00 0.00 0.00 2.57
2070 3571 0.616371 CACCAACCGGGACCAATAGA 59.384 55.000 6.32 0.00 41.15 1.98
2090 3591 0.168788 CATCCACGCGTCAGCATTTT 59.831 50.000 9.86 0.00 45.49 1.82
2092 3593 1.514003 TCCACGCGTCAGCATTTTTA 58.486 45.000 9.86 0.00 45.49 1.52
2132 3639 4.817874 TTTTAAAGAGGGGGAGGTTTGA 57.182 40.909 0.00 0.00 0.00 2.69
2238 3745 1.407618 TGCTTGGTCGACGCTACATAT 59.592 47.619 9.92 0.00 0.00 1.78
2423 3930 5.530171 CCGACACTACCGGCTACATATATAT 59.470 44.000 0.00 0.00 40.54 0.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.340078 GGAGCCATCGCGAGCATA 59.660 61.111 20.64 0.00 41.18 3.14
3 4 4.957684 CGGAGCCATCGCGAGCAT 62.958 66.667 20.64 7.41 41.18 3.79
5 6 3.559657 ATACGGAGCCATCGCGAGC 62.560 63.158 16.66 14.09 41.18 5.03
6 7 1.730902 CATACGGAGCCATCGCGAG 60.731 63.158 16.66 2.31 41.18 5.03
7 8 2.335011 CATACGGAGCCATCGCGA 59.665 61.111 13.09 13.09 41.18 5.87
8 9 2.027605 ACATACGGAGCCATCGCG 59.972 61.111 0.00 0.00 41.18 5.87
9 10 1.956170 CCACATACGGAGCCATCGC 60.956 63.158 0.00 0.00 0.00 4.58
10 11 0.597637 GACCACATACGGAGCCATCG 60.598 60.000 0.00 0.00 0.00 3.84
11 12 0.753262 AGACCACATACGGAGCCATC 59.247 55.000 0.00 0.00 0.00 3.51
12 13 2.082140 TAGACCACATACGGAGCCAT 57.918 50.000 0.00 0.00 0.00 4.40
13 14 1.961394 GATAGACCACATACGGAGCCA 59.039 52.381 0.00 0.00 0.00 4.75
14 15 1.272769 GGATAGACCACATACGGAGCC 59.727 57.143 0.00 0.00 38.79 4.70
15 16 2.029828 CAGGATAGACCACATACGGAGC 60.030 54.545 0.00 0.00 42.04 4.70
16 17 2.029828 GCAGGATAGACCACATACGGAG 60.030 54.545 0.00 0.00 42.04 4.63
17 18 1.961394 GCAGGATAGACCACATACGGA 59.039 52.381 0.00 0.00 42.04 4.69
18 19 1.686587 TGCAGGATAGACCACATACGG 59.313 52.381 0.00 0.00 42.04 4.02
19 20 2.623416 TCTGCAGGATAGACCACATACG 59.377 50.000 15.13 0.00 42.04 3.06
20 21 3.006323 CCTCTGCAGGATAGACCACATAC 59.994 52.174 15.13 0.00 43.65 2.39
21 22 3.234353 CCTCTGCAGGATAGACCACATA 58.766 50.000 15.13 0.00 43.65 2.29
22 23 2.045524 CCTCTGCAGGATAGACCACAT 58.954 52.381 15.13 0.00 43.65 3.21
23 24 1.489481 CCTCTGCAGGATAGACCACA 58.511 55.000 15.13 0.00 43.65 4.17
24 25 0.105778 GCCTCTGCAGGATAGACCAC 59.894 60.000 15.13 0.00 43.65 4.16
25 26 1.050988 GGCCTCTGCAGGATAGACCA 61.051 60.000 15.13 0.00 43.65 4.02
26 27 1.751563 GGCCTCTGCAGGATAGACC 59.248 63.158 15.13 1.76 43.65 3.85
27 28 1.365633 CGGCCTCTGCAGGATAGAC 59.634 63.158 15.13 1.25 43.65 2.59
28 29 3.862142 CGGCCTCTGCAGGATAGA 58.138 61.111 15.13 0.00 43.65 1.98
34 35 4.154347 GTCCTCCGGCCTCTGCAG 62.154 72.222 7.63 7.63 40.13 4.41
35 36 2.871795 TATGTCCTCCGGCCTCTGCA 62.872 60.000 0.00 0.00 40.13 4.41
36 37 2.093537 CTATGTCCTCCGGCCTCTGC 62.094 65.000 0.00 0.00 0.00 4.26
37 38 0.468214 TCTATGTCCTCCGGCCTCTG 60.468 60.000 0.00 0.00 0.00 3.35
38 39 0.468400 GTCTATGTCCTCCGGCCTCT 60.468 60.000 0.00 0.00 0.00 3.69
39 40 0.468400 AGTCTATGTCCTCCGGCCTC 60.468 60.000 0.00 0.00 0.00 4.70
40 41 0.032017 AAGTCTATGTCCTCCGGCCT 60.032 55.000 0.00 0.00 0.00 5.19
41 42 0.831307 AAAGTCTATGTCCTCCGGCC 59.169 55.000 0.00 0.00 0.00 6.13
42 43 2.693267 AAAAGTCTATGTCCTCCGGC 57.307 50.000 0.00 0.00 0.00 6.13
59 60 4.204012 CCGGGTAGAAGCCATCATAAAAA 58.796 43.478 0.00 0.00 34.89 1.94
60 61 3.201266 ACCGGGTAGAAGCCATCATAAAA 59.799 43.478 6.32 0.00 34.89 1.52
61 62 2.775384 ACCGGGTAGAAGCCATCATAAA 59.225 45.455 6.32 0.00 34.89 1.40
62 63 2.404559 ACCGGGTAGAAGCCATCATAA 58.595 47.619 6.32 0.00 34.89 1.90
63 64 2.097110 ACCGGGTAGAAGCCATCATA 57.903 50.000 6.32 0.00 34.89 2.15
64 65 1.134098 CAACCGGGTAGAAGCCATCAT 60.134 52.381 6.32 0.00 34.89 2.45
65 66 0.251916 CAACCGGGTAGAAGCCATCA 59.748 55.000 6.32 0.00 34.89 3.07
66 67 0.463833 CCAACCGGGTAGAAGCCATC 60.464 60.000 6.32 0.00 34.89 3.51
67 68 0.912487 TCCAACCGGGTAGAAGCCAT 60.912 55.000 6.32 0.00 34.89 4.40
68 69 1.536907 TCCAACCGGGTAGAAGCCA 60.537 57.895 6.32 0.00 34.89 4.75
69 70 1.221021 CTCCAACCGGGTAGAAGCC 59.779 63.158 6.32 0.00 38.11 4.35
70 71 0.391263 CACTCCAACCGGGTAGAAGC 60.391 60.000 6.32 0.00 38.11 3.86
71 72 0.391263 GCACTCCAACCGGGTAGAAG 60.391 60.000 6.32 0.00 38.11 2.85
72 73 0.834687 AGCACTCCAACCGGGTAGAA 60.835 55.000 6.32 0.00 38.11 2.10
73 74 1.229082 AGCACTCCAACCGGGTAGA 60.229 57.895 6.32 0.00 38.11 2.59
74 75 1.218316 GAGCACTCCAACCGGGTAG 59.782 63.158 6.32 0.00 38.11 3.18
75 76 2.642254 CGAGCACTCCAACCGGGTA 61.642 63.158 6.32 0.00 38.11 3.69
76 77 4.003788 CGAGCACTCCAACCGGGT 62.004 66.667 6.32 0.00 38.11 5.28
77 78 4.760047 CCGAGCACTCCAACCGGG 62.760 72.222 6.32 0.00 36.81 5.73
80 81 4.329545 TGGCCGAGCACTCCAACC 62.330 66.667 0.00 0.00 0.00 3.77
81 82 2.743928 CTGGCCGAGCACTCCAAC 60.744 66.667 0.00 0.00 0.00 3.77
82 83 4.020617 CCTGGCCGAGCACTCCAA 62.021 66.667 0.00 0.00 0.00 3.53
85 86 4.459089 GTCCCTGGCCGAGCACTC 62.459 72.222 0.00 0.00 0.00 3.51
87 88 3.628646 AATGTCCCTGGCCGAGCAC 62.629 63.158 0.00 0.00 0.00 4.40
88 89 2.424842 AAAATGTCCCTGGCCGAGCA 62.425 55.000 0.00 0.00 0.00 4.26
89 90 1.250840 AAAAATGTCCCTGGCCGAGC 61.251 55.000 0.00 0.00 0.00 5.03
90 91 2.961424 AAAAATGTCCCTGGCCGAG 58.039 52.632 0.00 0.00 0.00 4.63
116 117 0.680921 AGGTCAAACCGCCATCCATG 60.681 55.000 0.00 0.00 44.90 3.66
117 118 0.039618 AAGGTCAAACCGCCATCCAT 59.960 50.000 0.00 0.00 44.90 3.41
118 119 0.608035 GAAGGTCAAACCGCCATCCA 60.608 55.000 0.00 0.00 44.90 3.41
119 120 1.644786 CGAAGGTCAAACCGCCATCC 61.645 60.000 0.00 0.00 44.90 3.51
120 121 1.794222 CGAAGGTCAAACCGCCATC 59.206 57.895 0.00 0.00 44.90 3.51
121 122 3.981308 CGAAGGTCAAACCGCCAT 58.019 55.556 0.00 0.00 44.90 4.40
138 139 1.823899 GGTGATGCCGGTCCAATCC 60.824 63.158 1.90 0.00 0.00 3.01
139 140 0.394352 AAGGTGATGCCGGTCCAATC 60.394 55.000 1.90 2.43 43.70 2.67
140 141 0.916086 TAAGGTGATGCCGGTCCAAT 59.084 50.000 1.90 0.00 43.70 3.16
141 142 0.251916 CTAAGGTGATGCCGGTCCAA 59.748 55.000 1.90 0.00 43.70 3.53
142 143 1.622607 CCTAAGGTGATGCCGGTCCA 61.623 60.000 1.90 0.00 43.70 4.02
143 144 1.146263 CCTAAGGTGATGCCGGTCC 59.854 63.158 1.90 0.00 43.70 4.46
144 145 1.523938 GCCTAAGGTGATGCCGGTC 60.524 63.158 1.90 0.00 43.70 4.79
145 146 2.590092 GCCTAAGGTGATGCCGGT 59.410 61.111 1.90 0.00 43.70 5.28
146 147 2.203209 GGCCTAAGGTGATGCCGG 60.203 66.667 0.00 0.00 43.70 6.13
148 149 0.548510 AAGAGGCCTAAGGTGATGCC 59.451 55.000 4.42 0.00 44.35 4.40
149 150 2.426842 AAAGAGGCCTAAGGTGATGC 57.573 50.000 4.42 0.00 0.00 3.91
150 151 5.934781 AGATAAAAGAGGCCTAAGGTGATG 58.065 41.667 4.42 0.00 0.00 3.07
151 152 6.582929 AAGATAAAAGAGGCCTAAGGTGAT 57.417 37.500 4.42 0.00 0.00 3.06
152 153 6.388619 AAAGATAAAAGAGGCCTAAGGTGA 57.611 37.500 4.42 0.00 0.00 4.02
153 154 7.468141 AAAAAGATAAAAGAGGCCTAAGGTG 57.532 36.000 4.42 0.00 0.00 4.00
174 175 1.301423 ACGCCAGCAGTAACGAAAAA 58.699 45.000 0.00 0.00 0.00 1.94
175 176 1.301423 AACGCCAGCAGTAACGAAAA 58.699 45.000 0.00 0.00 0.00 2.29
176 177 1.301423 AAACGCCAGCAGTAACGAAA 58.699 45.000 0.00 0.00 0.00 3.46
177 178 1.301423 AAAACGCCAGCAGTAACGAA 58.699 45.000 0.00 0.00 0.00 3.85
178 179 1.301423 AAAAACGCCAGCAGTAACGA 58.699 45.000 0.00 0.00 0.00 3.85
179 180 3.837669 AAAAACGCCAGCAGTAACG 57.162 47.368 0.00 0.00 0.00 3.18
209 210 9.959749 CAAAGTTACAAAGTATTAGAAGCCAAA 57.040 29.630 0.00 0.00 0.00 3.28
210 211 8.573035 CCAAAGTTACAAAGTATTAGAAGCCAA 58.427 33.333 0.00 0.00 0.00 4.52
211 212 7.308951 GCCAAAGTTACAAAGTATTAGAAGCCA 60.309 37.037 0.00 0.00 0.00 4.75
212 213 7.027760 GCCAAAGTTACAAAGTATTAGAAGCC 58.972 38.462 0.00 0.00 0.00 4.35
213 214 7.750903 CAGCCAAAGTTACAAAGTATTAGAAGC 59.249 37.037 0.00 0.00 0.00 3.86
214 215 8.784043 ACAGCCAAAGTTACAAAGTATTAGAAG 58.216 33.333 0.00 0.00 0.00 2.85
215 216 8.564574 CACAGCCAAAGTTACAAAGTATTAGAA 58.435 33.333 0.00 0.00 0.00 2.10
216 217 7.717875 ACACAGCCAAAGTTACAAAGTATTAGA 59.282 33.333 0.00 0.00 0.00 2.10
217 218 7.803189 CACACAGCCAAAGTTACAAAGTATTAG 59.197 37.037 0.00 0.00 0.00 1.73
218 219 7.644490 CACACAGCCAAAGTTACAAAGTATTA 58.356 34.615 0.00 0.00 0.00 0.98
219 220 6.503524 CACACAGCCAAAGTTACAAAGTATT 58.496 36.000 0.00 0.00 0.00 1.89
220 221 5.507315 GCACACAGCCAAAGTTACAAAGTAT 60.507 40.000 0.00 0.00 37.23 2.12
221 222 4.201970 GCACACAGCCAAAGTTACAAAGTA 60.202 41.667 0.00 0.00 37.23 2.24
222 223 3.428862 GCACACAGCCAAAGTTACAAAGT 60.429 43.478 0.00 0.00 37.23 2.66
223 224 3.115554 GCACACAGCCAAAGTTACAAAG 58.884 45.455 0.00 0.00 37.23 2.77
224 225 2.493675 TGCACACAGCCAAAGTTACAAA 59.506 40.909 0.00 0.00 44.83 2.83
225 226 2.095461 TGCACACAGCCAAAGTTACAA 58.905 42.857 0.00 0.00 44.83 2.41
226 227 1.756430 TGCACACAGCCAAAGTTACA 58.244 45.000 0.00 0.00 44.83 2.41
227 228 2.554032 AGATGCACACAGCCAAAGTTAC 59.446 45.455 0.00 0.00 44.83 2.50
228 229 2.862541 AGATGCACACAGCCAAAGTTA 58.137 42.857 0.00 0.00 44.83 2.24
229 230 1.696063 AGATGCACACAGCCAAAGTT 58.304 45.000 0.00 0.00 44.83 2.66
230 231 2.430465 CTAGATGCACACAGCCAAAGT 58.570 47.619 0.00 0.00 44.83 2.66
231 232 1.131883 GCTAGATGCACACAGCCAAAG 59.868 52.381 0.00 0.00 44.83 2.77
232 233 1.167851 GCTAGATGCACACAGCCAAA 58.832 50.000 0.00 0.00 44.83 3.28
233 234 0.325933 AGCTAGATGCACACAGCCAA 59.674 50.000 10.69 0.00 45.94 4.52
234 235 1.194218 TAGCTAGATGCACACAGCCA 58.806 50.000 10.69 0.00 45.94 4.75
235 236 2.141517 CATAGCTAGATGCACACAGCC 58.858 52.381 10.69 0.00 45.94 4.85
244 245 1.403914 CGGCCTCTGCATAGCTAGATG 60.404 57.143 0.00 0.00 40.13 2.90
245 246 0.894141 CGGCCTCTGCATAGCTAGAT 59.106 55.000 0.00 0.00 40.13 1.98
246 247 1.181741 CCGGCCTCTGCATAGCTAGA 61.182 60.000 0.00 0.00 40.13 2.43
247 248 1.291588 CCGGCCTCTGCATAGCTAG 59.708 63.158 0.00 0.00 40.13 3.42
248 249 2.210013 CCCGGCCTCTGCATAGCTA 61.210 63.158 0.00 0.00 40.13 3.32
249 250 3.554342 CCCGGCCTCTGCATAGCT 61.554 66.667 0.00 0.00 40.13 3.32
250 251 3.866582 ACCCGGCCTCTGCATAGC 61.867 66.667 0.00 0.00 40.13 2.97
251 252 1.762522 ATCACCCGGCCTCTGCATAG 61.763 60.000 0.00 0.00 40.13 2.23
252 253 1.758440 GATCACCCGGCCTCTGCATA 61.758 60.000 0.00 0.00 40.13 3.14
253 254 3.092511 ATCACCCGGCCTCTGCAT 61.093 61.111 0.00 0.00 40.13 3.96
254 255 3.785859 GATCACCCGGCCTCTGCA 61.786 66.667 0.00 0.00 40.13 4.41
255 256 2.543067 AAAGATCACCCGGCCTCTGC 62.543 60.000 0.00 0.00 0.00 4.26
256 257 0.745845 CAAAGATCACCCGGCCTCTG 60.746 60.000 0.00 0.00 0.00 3.35
257 258 0.909610 TCAAAGATCACCCGGCCTCT 60.910 55.000 0.00 0.00 0.00 3.69
258 259 0.181350 ATCAAAGATCACCCGGCCTC 59.819 55.000 0.00 0.00 0.00 4.70
259 260 0.107017 CATCAAAGATCACCCGGCCT 60.107 55.000 0.00 0.00 0.00 5.19
260 261 1.728490 GCATCAAAGATCACCCGGCC 61.728 60.000 0.00 0.00 0.00 6.13
261 262 1.729881 GCATCAAAGATCACCCGGC 59.270 57.895 0.00 0.00 0.00 6.13
262 263 1.439353 CCGCATCAAAGATCACCCGG 61.439 60.000 0.00 0.00 0.00 5.73
263 264 0.744414 ACCGCATCAAAGATCACCCG 60.744 55.000 0.00 0.00 0.00 5.28
264 265 1.133025 CAACCGCATCAAAGATCACCC 59.867 52.381 0.00 0.00 0.00 4.61
265 266 1.812571 ACAACCGCATCAAAGATCACC 59.187 47.619 0.00 0.00 0.00 4.02
266 267 4.332543 TGATACAACCGCATCAAAGATCAC 59.667 41.667 0.00 0.00 0.00 3.06
267 268 4.512484 TGATACAACCGCATCAAAGATCA 58.488 39.130 0.00 0.00 0.00 2.92
268 269 5.065218 AGTTGATACAACCGCATCAAAGATC 59.935 40.000 10.38 0.00 41.50 2.75
269 270 4.943705 AGTTGATACAACCGCATCAAAGAT 59.056 37.500 10.38 0.00 41.50 2.40
270 271 4.323417 AGTTGATACAACCGCATCAAAGA 58.677 39.130 10.38 0.00 41.50 2.52
271 272 4.651994 GAGTTGATACAACCGCATCAAAG 58.348 43.478 10.38 0.00 41.50 2.77
272 273 3.124466 CGAGTTGATACAACCGCATCAAA 59.876 43.478 10.38 0.00 41.50 2.69
273 274 2.670905 CGAGTTGATACAACCGCATCAA 59.329 45.455 10.38 0.00 38.50 2.57
274 275 2.094442 TCGAGTTGATACAACCGCATCA 60.094 45.455 10.38 0.00 0.00 3.07
275 276 2.536365 TCGAGTTGATACAACCGCATC 58.464 47.619 10.38 2.36 0.00 3.91
276 277 2.665649 TCGAGTTGATACAACCGCAT 57.334 45.000 10.38 0.00 0.00 4.73
277 278 2.665649 ATCGAGTTGATACAACCGCA 57.334 45.000 10.38 5.91 34.83 5.69
278 279 5.233476 TGAAATATCGAGTTGATACAACCGC 59.767 40.000 10.38 3.77 42.24 5.68
279 280 6.822073 TGAAATATCGAGTTGATACAACCG 57.178 37.500 10.38 12.67 42.24 4.44
280 281 9.651718 GAATTGAAATATCGAGTTGATACAACC 57.348 33.333 10.38 3.04 42.24 3.77
292 293 9.528018 GGGCTTTTTATTGAATTGAAATATCGA 57.472 29.630 0.00 0.00 0.00 3.59
293 294 9.533253 AGGGCTTTTTATTGAATTGAAATATCG 57.467 29.630 0.00 0.00 0.00 2.92
299 300 9.364989 CGATAAAGGGCTTTTTATTGAATTGAA 57.635 29.630 0.00 0.00 36.89 2.69
300 301 8.744652 TCGATAAAGGGCTTTTTATTGAATTGA 58.255 29.630 15.99 5.03 39.08 2.57
301 302 8.925161 TCGATAAAGGGCTTTTTATTGAATTG 57.075 30.769 15.99 3.28 39.08 2.32
302 303 9.936759 TTTCGATAAAGGGCTTTTTATTGAATT 57.063 25.926 23.12 0.00 44.70 2.17
303 304 9.936759 TTTTCGATAAAGGGCTTTTTATTGAAT 57.063 25.926 23.12 5.83 44.70 2.57
304 305 9.765795 TTTTTCGATAAAGGGCTTTTTATTGAA 57.234 25.926 20.99 20.99 44.22 2.69
329 330 8.604035 CACTAGACATCGCACATTATACTTTTT 58.396 33.333 0.00 0.00 0.00 1.94
330 331 7.224753 CCACTAGACATCGCACATTATACTTTT 59.775 37.037 0.00 0.00 0.00 2.27
331 332 6.701841 CCACTAGACATCGCACATTATACTTT 59.298 38.462 0.00 0.00 0.00 2.66
332 333 6.183360 ACCACTAGACATCGCACATTATACTT 60.183 38.462 0.00 0.00 0.00 2.24
333 334 5.302059 ACCACTAGACATCGCACATTATACT 59.698 40.000 0.00 0.00 0.00 2.12
334 335 5.529791 ACCACTAGACATCGCACATTATAC 58.470 41.667 0.00 0.00 0.00 1.47
457 475 2.647529 AGATCGCGTGTGTATTGACA 57.352 45.000 5.77 0.00 0.00 3.58
458 476 3.121328 GCATAGATCGCGTGTGTATTGAC 60.121 47.826 5.77 0.00 0.00 3.18
469 487 3.059966 GTGTATGTCATGCATAGATCGCG 59.940 47.826 6.89 0.00 40.42 5.87
494 512 2.727607 CGTCTGTGTGTTTGTGTTGGTG 60.728 50.000 0.00 0.00 0.00 4.17
534 553 1.885887 GTTGGTGGTTGCTGCTTATCA 59.114 47.619 0.00 0.00 0.00 2.15
726 758 2.756760 GACCACAAGTGATTCCATGCAT 59.243 45.455 0.94 0.00 0.00 3.96
744 776 5.871524 CCAGTACATATGCATACATCTGACC 59.128 44.000 21.15 9.43 37.74 4.02
876 2331 4.433186 TTTTTGAACTGCATGGGTATCG 57.567 40.909 0.00 0.00 0.00 2.92
918 2382 2.119484 TTGTAGCCTGGGGACGTTGG 62.119 60.000 0.00 0.00 0.00 3.77
920 2384 0.696501 ATTTGTAGCCTGGGGACGTT 59.303 50.000 0.00 0.00 0.00 3.99
986 2452 5.341872 AGATGCCATGATTAGCTAGCTAG 57.658 43.478 23.03 16.84 0.00 3.42
987 2453 5.337894 GGAAGATGCCATGATTAGCTAGCTA 60.338 44.000 20.67 20.67 0.00 3.32
988 2454 4.565236 GGAAGATGCCATGATTAGCTAGCT 60.565 45.833 23.12 23.12 0.00 3.32
989 2455 3.688673 GGAAGATGCCATGATTAGCTAGC 59.311 47.826 6.62 6.62 0.00 3.42
1137 2603 4.612412 TTGTCCCACGTCACCGGC 62.612 66.667 0.00 0.00 38.78 6.13
1254 2721 4.436998 GTCCACGACTGCCCGGAG 62.437 72.222 0.73 0.00 0.00 4.63
1556 3031 9.809096 ATTCAAAATACACACACATAAACACAA 57.191 25.926 0.00 0.00 0.00 3.33
1633 3134 0.886490 GGATACATGCAGGCCGGAAG 60.886 60.000 5.05 0.00 0.00 3.46
1676 3177 1.537776 CCGCATGGCTGTGTTCAAAAA 60.538 47.619 0.00 0.00 0.00 1.94
1677 3178 0.031857 CCGCATGGCTGTGTTCAAAA 59.968 50.000 0.00 0.00 0.00 2.44
1678 3179 1.659233 CCGCATGGCTGTGTTCAAA 59.341 52.632 0.00 0.00 0.00 2.69
1679 3180 3.353600 CCGCATGGCTGTGTTCAA 58.646 55.556 0.00 0.00 0.00 2.69
1689 3190 2.513204 CTCCACAGAGCCGCATGG 60.513 66.667 0.00 0.00 32.13 3.66
1697 3198 1.073964 CATTCACACGCTCCACAGAG 58.926 55.000 0.00 0.00 43.57 3.35
1698 3199 0.392706 ACATTCACACGCTCCACAGA 59.607 50.000 0.00 0.00 0.00 3.41
1699 3200 2.078849 TACATTCACACGCTCCACAG 57.921 50.000 0.00 0.00 0.00 3.66
1700 3201 2.535012 TTACATTCACACGCTCCACA 57.465 45.000 0.00 0.00 0.00 4.17
1701 3202 3.000041 TCATTACATTCACACGCTCCAC 59.000 45.455 0.00 0.00 0.00 4.02
1702 3203 3.261580 CTCATTACATTCACACGCTCCA 58.738 45.455 0.00 0.00 0.00 3.86
1703 3204 3.262420 ACTCATTACATTCACACGCTCC 58.738 45.455 0.00 0.00 0.00 4.70
1704 3205 4.928661 AACTCATTACATTCACACGCTC 57.071 40.909 0.00 0.00 0.00 5.03
1705 3206 6.985188 ATTAACTCATTACATTCACACGCT 57.015 33.333 0.00 0.00 0.00 5.07
1706 3207 6.021468 GCAATTAACTCATTACATTCACACGC 60.021 38.462 0.00 0.00 0.00 5.34
1707 3208 6.192682 CGCAATTAACTCATTACATTCACACG 59.807 38.462 0.00 0.00 0.00 4.49
1708 3209 6.021468 GCGCAATTAACTCATTACATTCACAC 60.021 38.462 0.30 0.00 0.00 3.82
1709 3210 6.027131 GCGCAATTAACTCATTACATTCACA 58.973 36.000 0.30 0.00 0.00 3.58
1710 3211 6.258160 AGCGCAATTAACTCATTACATTCAC 58.742 36.000 11.47 0.00 0.00 3.18
1711 3212 6.435430 AGCGCAATTAACTCATTACATTCA 57.565 33.333 11.47 0.00 0.00 2.57
1712 3213 7.740519 AAAGCGCAATTAACTCATTACATTC 57.259 32.000 11.47 0.00 0.00 2.67
1713 3214 7.063308 CCAAAAGCGCAATTAACTCATTACATT 59.937 33.333 11.47 0.00 0.00 2.71
1714 3215 6.531240 CCAAAAGCGCAATTAACTCATTACAT 59.469 34.615 11.47 0.00 0.00 2.29
1715 3216 5.861251 CCAAAAGCGCAATTAACTCATTACA 59.139 36.000 11.47 0.00 0.00 2.41
1716 3217 5.861787 ACCAAAAGCGCAATTAACTCATTAC 59.138 36.000 11.47 0.00 0.00 1.89
1717 3218 6.019779 ACCAAAAGCGCAATTAACTCATTA 57.980 33.333 11.47 0.00 0.00 1.90
1718 3219 4.881920 ACCAAAAGCGCAATTAACTCATT 58.118 34.783 11.47 0.00 0.00 2.57
1719 3220 4.519540 ACCAAAAGCGCAATTAACTCAT 57.480 36.364 11.47 0.00 0.00 2.90
1720 3221 4.276183 TGTACCAAAAGCGCAATTAACTCA 59.724 37.500 11.47 0.00 0.00 3.41
1721 3222 4.789784 TGTACCAAAAGCGCAATTAACTC 58.210 39.130 11.47 0.00 0.00 3.01
1722 3223 4.839668 TGTACCAAAAGCGCAATTAACT 57.160 36.364 11.47 0.00 0.00 2.24
1723 3224 7.327518 AGTTTATGTACCAAAAGCGCAATTAAC 59.672 33.333 11.47 2.93 0.00 2.01
1724 3225 7.371936 AGTTTATGTACCAAAAGCGCAATTAA 58.628 30.769 11.47 0.00 0.00 1.40
1725 3226 6.915349 AGTTTATGTACCAAAAGCGCAATTA 58.085 32.000 11.47 0.00 0.00 1.40
1726 3227 5.778862 AGTTTATGTACCAAAAGCGCAATT 58.221 33.333 11.47 0.24 0.00 2.32
1727 3228 5.385509 AGTTTATGTACCAAAAGCGCAAT 57.614 34.783 11.47 0.00 0.00 3.56
1728 3229 4.839668 AGTTTATGTACCAAAAGCGCAA 57.160 36.364 11.47 0.00 0.00 4.85
1729 3230 4.541779 CAAGTTTATGTACCAAAAGCGCA 58.458 39.130 11.47 0.00 0.00 6.09
1730 3231 3.363724 GCAAGTTTATGTACCAAAAGCGC 59.636 43.478 0.00 0.00 0.00 5.92
1731 3232 4.381566 GTGCAAGTTTATGTACCAAAAGCG 59.618 41.667 0.00 0.00 30.71 4.68
1732 3233 4.381566 CGTGCAAGTTTATGTACCAAAAGC 59.618 41.667 0.00 0.00 32.99 3.51
1733 3234 5.516090 ACGTGCAAGTTTATGTACCAAAAG 58.484 37.500 0.00 0.00 32.99 2.27
1734 3235 5.066117 TGACGTGCAAGTTTATGTACCAAAA 59.934 36.000 6.76 0.00 32.99 2.44
1735 3236 4.575236 TGACGTGCAAGTTTATGTACCAAA 59.425 37.500 6.76 0.00 32.99 3.28
1736 3237 4.127907 TGACGTGCAAGTTTATGTACCAA 58.872 39.130 6.76 0.00 32.99 3.67
1737 3238 3.729966 TGACGTGCAAGTTTATGTACCA 58.270 40.909 6.76 0.00 32.99 3.25
1738 3239 4.153475 ACATGACGTGCAAGTTTATGTACC 59.847 41.667 24.16 6.03 33.54 3.34
1739 3240 5.277601 ACATGACGTGCAAGTTTATGTAC 57.722 39.130 24.16 6.62 33.54 2.90
1740 3241 5.927115 TGTACATGACGTGCAAGTTTATGTA 59.073 36.000 25.14 25.14 37.28 2.29
1741 3242 4.752604 TGTACATGACGTGCAAGTTTATGT 59.247 37.500 26.51 26.51 37.28 2.29
1742 3243 5.276240 TGTACATGACGTGCAAGTTTATG 57.724 39.130 20.79 20.79 37.28 1.90
1743 3244 5.933187 TTGTACATGACGTGCAAGTTTAT 57.067 34.783 6.76 2.29 44.15 1.40
1749 3250 4.820284 TGAATTTGTACATGACGTGCAA 57.180 36.364 0.00 0.00 46.85 4.08
1750 3251 6.676237 ATATGAATTTGTACATGACGTGCA 57.324 33.333 0.00 0.00 38.59 4.57
1786 3287 9.912634 CAAGTTGTTAGACCAATTTGTATCATT 57.087 29.630 0.00 0.00 37.31 2.57
1787 3288 9.077885 ACAAGTTGTTAGACCAATTTGTATCAT 57.922 29.630 1.64 0.00 46.71 2.45
1788 3289 8.349245 CACAAGTTGTTAGACCAATTTGTATCA 58.651 33.333 5.57 0.00 46.80 2.15
1789 3290 8.349983 ACACAAGTTGTTAGACCAATTTGTATC 58.650 33.333 5.57 0.00 46.80 2.24
1790 3291 8.232913 ACACAAGTTGTTAGACCAATTTGTAT 57.767 30.769 5.57 1.97 46.80 2.29
1791 3292 7.633193 ACACAAGTTGTTAGACCAATTTGTA 57.367 32.000 5.57 0.00 46.80 2.41
1805 3306 2.988570 TGTACCCGAAACACAAGTTGT 58.011 42.857 1.64 1.64 41.74 3.32
1806 3307 4.561735 AATGTACCCGAAACACAAGTTG 57.438 40.909 0.00 0.00 38.17 3.16
1807 3308 5.008911 GGTAAATGTACCCGAAACACAAGTT 59.991 40.000 0.00 0.00 43.73 2.66
1808 3309 4.516321 GGTAAATGTACCCGAAACACAAGT 59.484 41.667 0.00 0.00 43.73 3.16
1809 3310 5.038247 GGTAAATGTACCCGAAACACAAG 57.962 43.478 0.00 0.00 43.73 3.16
1821 3322 7.781548 ATGACGGAAATGTAGGTAAATGTAC 57.218 36.000 0.00 0.00 0.00 2.90
1822 3323 8.041919 TCAATGACGGAAATGTAGGTAAATGTA 58.958 33.333 0.00 0.00 0.00 2.29
1823 3324 6.882140 TCAATGACGGAAATGTAGGTAAATGT 59.118 34.615 0.00 0.00 0.00 2.71
1824 3325 7.186804 GTCAATGACGGAAATGTAGGTAAATG 58.813 38.462 0.00 0.00 0.00 2.32
1825 3326 6.317893 GGTCAATGACGGAAATGTAGGTAAAT 59.682 38.462 7.35 0.00 32.65 1.40
1826 3327 5.644636 GGTCAATGACGGAAATGTAGGTAAA 59.355 40.000 7.35 0.00 32.65 2.01
1827 3328 5.180271 GGTCAATGACGGAAATGTAGGTAA 58.820 41.667 7.35 0.00 32.65 2.85
1828 3329 4.678574 CGGTCAATGACGGAAATGTAGGTA 60.679 45.833 14.69 0.00 35.37 3.08
1829 3330 3.606687 GGTCAATGACGGAAATGTAGGT 58.393 45.455 7.35 0.00 32.65 3.08
1830 3331 2.607635 CGGTCAATGACGGAAATGTAGG 59.392 50.000 14.69 0.00 35.37 3.18
1831 3332 3.259064 ACGGTCAATGACGGAAATGTAG 58.741 45.455 24.46 3.28 36.58 2.74
1832 3333 3.322211 ACGGTCAATGACGGAAATGTA 57.678 42.857 24.46 0.00 36.58 2.29
1833 3334 2.178912 ACGGTCAATGACGGAAATGT 57.821 45.000 24.46 6.16 36.58 2.71
1834 3335 3.682858 ACTAACGGTCAATGACGGAAATG 59.317 43.478 24.46 14.09 36.58 2.32
1835 3336 3.930848 GACTAACGGTCAATGACGGAAAT 59.069 43.478 24.46 13.50 43.94 2.17
1836 3337 3.319755 GACTAACGGTCAATGACGGAAA 58.680 45.455 24.46 12.18 43.94 3.13
1837 3338 2.669113 CGACTAACGGTCAATGACGGAA 60.669 50.000 24.46 12.48 44.70 4.30
1838 3339 1.135603 CGACTAACGGTCAATGACGGA 60.136 52.381 24.46 5.26 44.70 4.69
1839 3340 1.265568 CGACTAACGGTCAATGACGG 58.734 55.000 17.61 17.61 44.70 4.79
1841 3342 5.654709 CAGTGACGACTAACGGTCAATGAC 61.655 50.000 14.24 4.51 43.26 3.06
1842 3343 3.610821 CAGTGACGACTAACGGTCAATGA 60.611 47.826 14.24 0.00 43.26 2.57
1851 3352 5.404667 CCTTTTTCTACCAGTGACGACTAAC 59.595 44.000 0.00 0.00 0.00 2.34
1852 3353 5.510179 CCCTTTTTCTACCAGTGACGACTAA 60.510 44.000 0.00 0.00 0.00 2.24
1853 3354 4.021719 CCCTTTTTCTACCAGTGACGACTA 60.022 45.833 0.00 0.00 0.00 2.59
1854 3355 3.244112 CCCTTTTTCTACCAGTGACGACT 60.244 47.826 0.00 0.00 0.00 4.18
1855 3356 3.064931 CCCTTTTTCTACCAGTGACGAC 58.935 50.000 0.00 0.00 0.00 4.34
1856 3357 2.549349 GCCCTTTTTCTACCAGTGACGA 60.549 50.000 0.00 0.00 0.00 4.20
1857 3358 1.804748 GCCCTTTTTCTACCAGTGACG 59.195 52.381 0.00 0.00 0.00 4.35
1858 3359 2.160205 GGCCCTTTTTCTACCAGTGAC 58.840 52.381 0.00 0.00 0.00 3.67
1912 3413 3.136626 CCCTTTAGTCCCGATTCAGGAAT 59.863 47.826 0.00 0.00 34.43 3.01
1921 3422 0.331278 TACCGACCCTTTAGTCCCGA 59.669 55.000 0.00 0.00 32.91 5.14
2070 3571 0.955428 AAATGCTGACGCGTGGATGT 60.955 50.000 20.70 1.22 39.65 3.06
2090 3591 4.779993 AAAACAAAAACCCCAGCCATAA 57.220 36.364 0.00 0.00 0.00 1.90
2092 3593 3.660970 AAAAACAAAAACCCCAGCCAT 57.339 38.095 0.00 0.00 0.00 4.40
2119 3625 0.704813 AAACCCTCAAACCTCCCCCT 60.705 55.000 0.00 0.00 0.00 4.79
2125 3632 0.105194 CCCCCAAAACCCTCAAACCT 60.105 55.000 0.00 0.00 0.00 3.50
2455 3962 6.183361 GGAGAATACTATGTGGACCATGAGTT 60.183 42.308 10.20 0.00 34.86 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.