Multiple sequence alignment - TraesCS7A01G198600
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G198600 | chr7A | 100.000 | 2786 | 0 | 0 | 1 | 2786 | 159732126 | 159729341 | 0.000000e+00 | 5145.0 |
1 | TraesCS7A01G198600 | chr7A | 96.622 | 740 | 19 | 4 | 1 | 740 | 732057555 | 732056822 | 0.000000e+00 | 1223.0 |
2 | TraesCS7A01G198600 | chr5B | 97.436 | 741 | 16 | 3 | 1 | 740 | 551809725 | 551808987 | 0.000000e+00 | 1260.0 |
3 | TraesCS7A01G198600 | chr5B | 96.501 | 743 | 21 | 3 | 1 | 743 | 590556164 | 590556901 | 0.000000e+00 | 1223.0 |
4 | TraesCS7A01G198600 | chr3B | 97.031 | 741 | 21 | 1 | 1 | 741 | 768201824 | 768201085 | 0.000000e+00 | 1245.0 |
5 | TraesCS7A01G198600 | chr3B | 93.103 | 58 | 4 | 0 | 845 | 902 | 175775301 | 175775358 | 4.940000e-13 | 86.1 |
6 | TraesCS7A01G198600 | chr7B | 96.900 | 742 | 18 | 3 | 1 | 742 | 706158808 | 706159544 | 0.000000e+00 | 1238.0 |
7 | TraesCS7A01G198600 | chr7B | 96.622 | 740 | 20 | 3 | 1 | 740 | 721101108 | 721100374 | 0.000000e+00 | 1223.0 |
8 | TraesCS7A01G198600 | chr7B | 96.643 | 566 | 18 | 1 | 2077 | 2642 | 119312440 | 119313004 | 0.000000e+00 | 939.0 |
9 | TraesCS7A01G198600 | chr7B | 85.653 | 697 | 79 | 11 | 976 | 1657 | 119287636 | 119288326 | 0.000000e+00 | 713.0 |
10 | TraesCS7A01G198600 | chr7B | 93.539 | 356 | 22 | 1 | 1648 | 2003 | 119311935 | 119312289 | 1.900000e-146 | 529.0 |
11 | TraesCS7A01G198600 | chr7B | 95.425 | 153 | 6 | 1 | 2634 | 2786 | 119316217 | 119316368 | 2.770000e-60 | 243.0 |
12 | TraesCS7A01G198600 | chr7B | 94.483 | 145 | 8 | 0 | 1648 | 1792 | 119289177 | 119289321 | 1.000000e-54 | 224.0 |
13 | TraesCS7A01G198600 | chr7B | 96.667 | 60 | 2 | 0 | 2001 | 2060 | 119312395 | 119312454 | 1.770000e-17 | 100.0 |
14 | TraesCS7A01G198600 | chr7B | 83.562 | 73 | 12 | 0 | 829 | 901 | 6934063 | 6934135 | 4.980000e-08 | 69.4 |
15 | TraesCS7A01G198600 | chr6B | 96.757 | 740 | 23 | 1 | 1 | 740 | 489488103 | 489487365 | 0.000000e+00 | 1232.0 |
16 | TraesCS7A01G198600 | chr6B | 96.361 | 742 | 21 | 4 | 1 | 742 | 662219197 | 662219932 | 0.000000e+00 | 1216.0 |
17 | TraesCS7A01G198600 | chr4A | 96.757 | 740 | 19 | 4 | 2 | 740 | 118993081 | 118993816 | 0.000000e+00 | 1229.0 |
18 | TraesCS7A01G198600 | chr7D | 92.672 | 232 | 16 | 1 | 2385 | 2616 | 156830382 | 156830612 | 1.600000e-87 | 333.0 |
19 | TraesCS7A01G198600 | chr7D | 95.000 | 180 | 9 | 0 | 2607 | 2786 | 156862388 | 156862567 | 1.630000e-72 | 283.0 |
20 | TraesCS7A01G198600 | chr6A | 92.265 | 181 | 14 | 0 | 739 | 919 | 12221005 | 12220825 | 9.900000e-65 | 257.0 |
21 | TraesCS7A01G198600 | chr2B | 87.931 | 58 | 7 | 0 | 845 | 902 | 526414203 | 526414146 | 4.980000e-08 | 69.4 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G198600 | chr7A | 159729341 | 159732126 | 2785 | True | 5145.00 | 5145 | 100.0000 | 1 | 2786 | 1 | chr7A.!!$R1 | 2785 |
1 | TraesCS7A01G198600 | chr7A | 732056822 | 732057555 | 733 | True | 1223.00 | 1223 | 96.6220 | 1 | 740 | 1 | chr7A.!!$R2 | 739 |
2 | TraesCS7A01G198600 | chr5B | 551808987 | 551809725 | 738 | True | 1260.00 | 1260 | 97.4360 | 1 | 740 | 1 | chr5B.!!$R1 | 739 |
3 | TraesCS7A01G198600 | chr5B | 590556164 | 590556901 | 737 | False | 1223.00 | 1223 | 96.5010 | 1 | 743 | 1 | chr5B.!!$F1 | 742 |
4 | TraesCS7A01G198600 | chr3B | 768201085 | 768201824 | 739 | True | 1245.00 | 1245 | 97.0310 | 1 | 741 | 1 | chr3B.!!$R1 | 740 |
5 | TraesCS7A01G198600 | chr7B | 706158808 | 706159544 | 736 | False | 1238.00 | 1238 | 96.9000 | 1 | 742 | 1 | chr7B.!!$F2 | 741 |
6 | TraesCS7A01G198600 | chr7B | 721100374 | 721101108 | 734 | True | 1223.00 | 1223 | 96.6220 | 1 | 740 | 1 | chr7B.!!$R1 | 739 |
7 | TraesCS7A01G198600 | chr7B | 119287636 | 119289321 | 1685 | False | 468.50 | 713 | 90.0680 | 976 | 1792 | 2 | chr7B.!!$F3 | 816 |
8 | TraesCS7A01G198600 | chr7B | 119311935 | 119316368 | 4433 | False | 452.75 | 939 | 95.5685 | 1648 | 2786 | 4 | chr7B.!!$F4 | 1138 |
9 | TraesCS7A01G198600 | chr6B | 489487365 | 489488103 | 738 | True | 1232.00 | 1232 | 96.7570 | 1 | 740 | 1 | chr6B.!!$R1 | 739 |
10 | TraesCS7A01G198600 | chr6B | 662219197 | 662219932 | 735 | False | 1216.00 | 1216 | 96.3610 | 1 | 742 | 1 | chr6B.!!$F1 | 741 |
11 | TraesCS7A01G198600 | chr4A | 118993081 | 118993816 | 735 | False | 1229.00 | 1229 | 96.7570 | 2 | 740 | 1 | chr4A.!!$F1 | 738 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
957 | 967 | 0.03467 | AAATCTCCAGCAGCCACCTC | 60.035 | 55.0 | 0.0 | 0.0 | 0.0 | 3.85 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2693 | 6914 | 0.388649 | ACGCTTCAGCTTGGTAGACG | 60.389 | 55.0 | 0.0 | 0.0 | 39.32 | 4.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 0.322816 | GGCTTGCAGGAAGGATGTCA | 60.323 | 55.000 | 0.00 | 0.00 | 31.56 | 3.58 |
90 | 91 | 2.744202 | GTGTGCTCCAATCTTGATTCGT | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.85 |
274 | 275 | 2.038837 | GCTACCGGCAACTTGGACC | 61.039 | 63.158 | 0.00 | 0.00 | 41.35 | 4.46 |
518 | 519 | 2.675844 | TGTTGATAATTGAACGCCGAGG | 59.324 | 45.455 | 0.00 | 0.00 | 0.00 | 4.63 |
585 | 586 | 2.476519 | GCCGTTTATTCGCCGAAATTGA | 60.477 | 45.455 | 2.60 | 0.00 | 0.00 | 2.57 |
709 | 715 | 1.668751 | GGCGATTTTTATGCGTCCTGA | 59.331 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
710 | 716 | 2.286418 | GGCGATTTTTATGCGTCCTGAG | 60.286 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
711 | 717 | 2.286418 | GCGATTTTTATGCGTCCTGAGG | 60.286 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
712 | 718 | 2.287915 | CGATTTTTATGCGTCCTGAGGG | 59.712 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
713 | 719 | 2.122783 | TTTTTATGCGTCCTGAGGGG | 57.877 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
714 | 720 | 1.281419 | TTTTATGCGTCCTGAGGGGA | 58.719 | 50.000 | 0.00 | 0.00 | 42.77 | 4.81 |
743 | 753 | 1.453669 | GGCTGGAGATGCCCTAAGG | 59.546 | 63.158 | 0.00 | 0.00 | 44.32 | 2.69 |
760 | 770 | 2.587753 | GCATTAGCCACCGCGCTA | 60.588 | 61.111 | 5.56 | 0.00 | 40.39 | 4.26 |
761 | 771 | 2.882366 | GCATTAGCCACCGCGCTAC | 61.882 | 63.158 | 5.56 | 0.00 | 41.01 | 3.58 |
762 | 772 | 2.279252 | ATTAGCCACCGCGCTACG | 60.279 | 61.111 | 5.56 | 0.00 | 41.01 | 3.51 |
773 | 783 | 2.778679 | CGCTACGCCTTCAGTTGC | 59.221 | 61.111 | 0.00 | 0.00 | 37.08 | 4.17 |
780 | 790 | 2.998668 | CGCCTTCAGTTGCGTTATAG | 57.001 | 50.000 | 0.00 | 0.00 | 45.43 | 1.31 |
781 | 791 | 1.593006 | CGCCTTCAGTTGCGTTATAGG | 59.407 | 52.381 | 0.00 | 0.00 | 45.43 | 2.57 |
782 | 792 | 2.737359 | CGCCTTCAGTTGCGTTATAGGA | 60.737 | 50.000 | 0.00 | 0.00 | 45.43 | 2.94 |
783 | 793 | 3.467803 | GCCTTCAGTTGCGTTATAGGAT | 58.532 | 45.455 | 0.00 | 0.00 | 0.00 | 3.24 |
784 | 794 | 4.628074 | GCCTTCAGTTGCGTTATAGGATA | 58.372 | 43.478 | 0.00 | 0.00 | 0.00 | 2.59 |
785 | 795 | 5.238583 | GCCTTCAGTTGCGTTATAGGATAT | 58.761 | 41.667 | 0.00 | 0.00 | 0.00 | 1.63 |
786 | 796 | 6.395629 | GCCTTCAGTTGCGTTATAGGATATA | 58.604 | 40.000 | 0.00 | 0.00 | 0.00 | 0.86 |
787 | 797 | 6.310711 | GCCTTCAGTTGCGTTATAGGATATAC | 59.689 | 42.308 | 0.00 | 0.00 | 0.00 | 1.47 |
788 | 798 | 6.812160 | CCTTCAGTTGCGTTATAGGATATACC | 59.188 | 42.308 | 0.00 | 0.00 | 39.35 | 2.73 |
789 | 799 | 6.904463 | TCAGTTGCGTTATAGGATATACCA | 57.096 | 37.500 | 0.00 | 0.00 | 42.04 | 3.25 |
790 | 800 | 6.920817 | TCAGTTGCGTTATAGGATATACCAG | 58.079 | 40.000 | 0.00 | 0.00 | 42.04 | 4.00 |
791 | 801 | 6.492429 | TCAGTTGCGTTATAGGATATACCAGT | 59.508 | 38.462 | 0.00 | 0.00 | 42.04 | 4.00 |
792 | 802 | 7.666804 | TCAGTTGCGTTATAGGATATACCAGTA | 59.333 | 37.037 | 0.00 | 0.00 | 42.04 | 2.74 |
793 | 803 | 8.467598 | CAGTTGCGTTATAGGATATACCAGTAT | 58.532 | 37.037 | 0.00 | 0.00 | 42.04 | 2.12 |
794 | 804 | 9.690913 | AGTTGCGTTATAGGATATACCAGTATA | 57.309 | 33.333 | 0.19 | 0.19 | 42.04 | 1.47 |
797 | 807 | 9.910267 | TGCGTTATAGGATATACCAGTATAAGA | 57.090 | 33.333 | 1.81 | 0.00 | 42.04 | 2.10 |
806 | 816 | 9.668497 | GGATATACCAGTATAAGAACCAAATCC | 57.332 | 37.037 | 1.81 | 0.00 | 38.79 | 3.01 |
809 | 819 | 8.747538 | ATACCAGTATAAGAACCAAATCCAAC | 57.252 | 34.615 | 0.00 | 0.00 | 0.00 | 3.77 |
810 | 820 | 5.646360 | ACCAGTATAAGAACCAAATCCAACG | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 4.10 |
811 | 821 | 5.065988 | CCAGTATAAGAACCAAATCCAACGG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 4.44 |
812 | 822 | 5.065988 | CAGTATAAGAACCAAATCCAACGGG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 5.28 |
826 | 836 | 4.939271 | TCCAACGGGATTTTGAGAAAAAC | 58.061 | 39.130 | 0.00 | 0.00 | 38.64 | 2.43 |
827 | 837 | 4.055360 | CCAACGGGATTTTGAGAAAAACC | 58.945 | 43.478 | 0.00 | 0.00 | 41.19 | 3.27 |
832 | 842 | 4.304110 | GGGATTTTGAGAAAAACCGAACC | 58.696 | 43.478 | 0.00 | 0.00 | 42.39 | 3.62 |
833 | 843 | 3.978855 | GGATTTTGAGAAAAACCGAACCG | 59.021 | 43.478 | 0.00 | 0.00 | 34.30 | 4.44 |
834 | 844 | 4.498513 | GGATTTTGAGAAAAACCGAACCGT | 60.499 | 41.667 | 0.00 | 0.00 | 34.30 | 4.83 |
835 | 845 | 4.437772 | TTTTGAGAAAAACCGAACCGTT | 57.562 | 36.364 | 0.00 | 0.00 | 0.00 | 4.44 |
836 | 846 | 3.678915 | TTGAGAAAAACCGAACCGTTC | 57.321 | 42.857 | 0.76 | 0.76 | 0.00 | 3.95 |
837 | 847 | 2.908916 | TGAGAAAAACCGAACCGTTCT | 58.091 | 42.857 | 9.55 | 0.00 | 0.00 | 3.01 |
838 | 848 | 2.610374 | TGAGAAAAACCGAACCGTTCTG | 59.390 | 45.455 | 9.55 | 5.49 | 0.00 | 3.02 |
839 | 849 | 2.610833 | GAGAAAAACCGAACCGTTCTGT | 59.389 | 45.455 | 9.55 | 6.13 | 0.00 | 3.41 |
840 | 850 | 3.011818 | AGAAAAACCGAACCGTTCTGTT | 58.988 | 40.909 | 13.52 | 13.52 | 38.50 | 3.16 |
841 | 851 | 3.064408 | AGAAAAACCGAACCGTTCTGTTC | 59.936 | 43.478 | 18.00 | 8.93 | 36.32 | 3.18 |
842 | 852 | 2.027003 | AAACCGAACCGTTCTGTTCA | 57.973 | 45.000 | 18.00 | 0.00 | 43.84 | 3.18 |
843 | 853 | 2.249844 | AACCGAACCGTTCTGTTCAT | 57.750 | 45.000 | 13.52 | 0.00 | 43.84 | 2.57 |
844 | 854 | 2.249844 | ACCGAACCGTTCTGTTCATT | 57.750 | 45.000 | 9.55 | 0.00 | 43.84 | 2.57 |
845 | 855 | 2.567985 | ACCGAACCGTTCTGTTCATTT | 58.432 | 42.857 | 9.55 | 0.00 | 43.84 | 2.32 |
846 | 856 | 3.731089 | ACCGAACCGTTCTGTTCATTTA | 58.269 | 40.909 | 9.55 | 0.00 | 43.84 | 1.40 |
847 | 857 | 4.320870 | ACCGAACCGTTCTGTTCATTTAT | 58.679 | 39.130 | 9.55 | 0.00 | 43.84 | 1.40 |
848 | 858 | 4.153475 | ACCGAACCGTTCTGTTCATTTATG | 59.847 | 41.667 | 9.55 | 0.00 | 43.84 | 1.90 |
849 | 859 | 4.436852 | CCGAACCGTTCTGTTCATTTATGG | 60.437 | 45.833 | 9.55 | 0.00 | 43.84 | 2.74 |
850 | 860 | 4.436852 | CGAACCGTTCTGTTCATTTATGGG | 60.437 | 45.833 | 9.55 | 0.00 | 43.84 | 4.00 |
851 | 861 | 4.028993 | ACCGTTCTGTTCATTTATGGGT | 57.971 | 40.909 | 0.00 | 0.00 | 0.00 | 4.51 |
852 | 862 | 3.756434 | ACCGTTCTGTTCATTTATGGGTG | 59.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.61 |
853 | 863 | 4.006989 | CCGTTCTGTTCATTTATGGGTGA | 58.993 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
854 | 864 | 4.640201 | CCGTTCTGTTCATTTATGGGTGAT | 59.360 | 41.667 | 0.00 | 0.00 | 0.00 | 3.06 |
855 | 865 | 5.820423 | CCGTTCTGTTCATTTATGGGTGATA | 59.180 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
856 | 866 | 6.486657 | CCGTTCTGTTCATTTATGGGTGATAT | 59.513 | 38.462 | 0.00 | 0.00 | 0.00 | 1.63 |
857 | 867 | 7.355017 | CGTTCTGTTCATTTATGGGTGATATG | 58.645 | 38.462 | 0.00 | 0.00 | 0.00 | 1.78 |
858 | 868 | 7.520453 | CGTTCTGTTCATTTATGGGTGATATGG | 60.520 | 40.741 | 0.00 | 0.00 | 0.00 | 2.74 |
859 | 869 | 6.910191 | TCTGTTCATTTATGGGTGATATGGT | 58.090 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
860 | 870 | 6.772233 | TCTGTTCATTTATGGGTGATATGGTG | 59.228 | 38.462 | 0.00 | 0.00 | 0.00 | 4.17 |
861 | 871 | 6.667661 | TGTTCATTTATGGGTGATATGGTGA | 58.332 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
862 | 872 | 6.772233 | TGTTCATTTATGGGTGATATGGTGAG | 59.228 | 38.462 | 0.00 | 0.00 | 0.00 | 3.51 |
863 | 873 | 6.514012 | TCATTTATGGGTGATATGGTGAGT | 57.486 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
864 | 874 | 7.625498 | TCATTTATGGGTGATATGGTGAGTA | 57.375 | 36.000 | 0.00 | 0.00 | 0.00 | 2.59 |
865 | 875 | 8.040002 | TCATTTATGGGTGATATGGTGAGTAA | 57.960 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
866 | 876 | 8.668653 | TCATTTATGGGTGATATGGTGAGTAAT | 58.331 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
867 | 877 | 9.300681 | CATTTATGGGTGATATGGTGAGTAATT | 57.699 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
868 | 878 | 9.881773 | ATTTATGGGTGATATGGTGAGTAATTT | 57.118 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
871 | 881 | 8.868522 | ATGGGTGATATGGTGAGTAATTTATG | 57.131 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
872 | 882 | 7.811282 | TGGGTGATATGGTGAGTAATTTATGT | 58.189 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
873 | 883 | 7.936847 | TGGGTGATATGGTGAGTAATTTATGTC | 59.063 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
874 | 884 | 7.936847 | GGGTGATATGGTGAGTAATTTATGTCA | 59.063 | 37.037 | 0.00 | 0.00 | 0.00 | 3.58 |
875 | 885 | 9.337396 | GGTGATATGGTGAGTAATTTATGTCAA | 57.663 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
880 | 890 | 7.359262 | TGGTGAGTAATTTATGTCAACTTCG | 57.641 | 36.000 | 7.78 | 0.00 | 0.00 | 3.79 |
881 | 891 | 7.156000 | TGGTGAGTAATTTATGTCAACTTCGA | 58.844 | 34.615 | 7.78 | 0.00 | 0.00 | 3.71 |
882 | 892 | 7.330946 | TGGTGAGTAATTTATGTCAACTTCGAG | 59.669 | 37.037 | 7.78 | 0.00 | 0.00 | 4.04 |
883 | 893 | 7.201530 | GGTGAGTAATTTATGTCAACTTCGAGG | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 4.63 |
884 | 894 | 6.816640 | TGAGTAATTTATGTCAACTTCGAGGG | 59.183 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
885 | 895 | 6.708285 | AGTAATTTATGTCAACTTCGAGGGT | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
886 | 896 | 7.844009 | AGTAATTTATGTCAACTTCGAGGGTA | 58.156 | 34.615 | 0.00 | 0.00 | 0.00 | 3.69 |
887 | 897 | 8.316214 | AGTAATTTATGTCAACTTCGAGGGTAA | 58.684 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
888 | 898 | 9.106070 | GTAATTTATGTCAACTTCGAGGGTAAT | 57.894 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
889 | 899 | 8.575649 | AATTTATGTCAACTTCGAGGGTAATT | 57.424 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
890 | 900 | 7.989416 | TTTATGTCAACTTCGAGGGTAATTT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
891 | 901 | 7.989416 | TTATGTCAACTTCGAGGGTAATTTT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
892 | 902 | 9.504708 | TTTATGTCAACTTCGAGGGTAATTTTA | 57.495 | 29.630 | 0.00 | 0.00 | 0.00 | 1.52 |
893 | 903 | 7.989416 | ATGTCAACTTCGAGGGTAATTTTAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
894 | 904 | 7.989416 | TGTCAACTTCGAGGGTAATTTTAAT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
895 | 905 | 7.812648 | TGTCAACTTCGAGGGTAATTTTAATG | 58.187 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
896 | 906 | 7.662258 | TGTCAACTTCGAGGGTAATTTTAATGA | 59.338 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
897 | 907 | 7.961283 | GTCAACTTCGAGGGTAATTTTAATGAC | 59.039 | 37.037 | 0.00 | 1.73 | 0.00 | 3.06 |
898 | 908 | 6.657836 | ACTTCGAGGGTAATTTTAATGACG | 57.342 | 37.500 | 0.00 | 0.00 | 0.00 | 4.35 |
899 | 909 | 6.168389 | ACTTCGAGGGTAATTTTAATGACGT | 58.832 | 36.000 | 0.00 | 0.00 | 0.00 | 4.34 |
900 | 910 | 7.322664 | ACTTCGAGGGTAATTTTAATGACGTA | 58.677 | 34.615 | 0.00 | 0.00 | 0.00 | 3.57 |
901 | 911 | 7.276438 | ACTTCGAGGGTAATTTTAATGACGTAC | 59.724 | 37.037 | 0.00 | 0.00 | 0.00 | 3.67 |
902 | 912 | 6.629128 | TCGAGGGTAATTTTAATGACGTACA | 58.371 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
903 | 913 | 7.095910 | TCGAGGGTAATTTTAATGACGTACAA | 58.904 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
904 | 914 | 7.063308 | TCGAGGGTAATTTTAATGACGTACAAC | 59.937 | 37.037 | 0.00 | 0.00 | 0.00 | 3.32 |
905 | 915 | 7.381766 | AGGGTAATTTTAATGACGTACAACC | 57.618 | 36.000 | 0.00 | 0.00 | 0.00 | 3.77 |
906 | 916 | 6.941436 | AGGGTAATTTTAATGACGTACAACCA | 59.059 | 34.615 | 0.00 | 0.00 | 0.00 | 3.67 |
907 | 917 | 7.120138 | AGGGTAATTTTAATGACGTACAACCAG | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
908 | 918 | 7.119553 | GGGTAATTTTAATGACGTACAACCAGA | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
909 | 919 | 8.505625 | GGTAATTTTAATGACGTACAACCAGAA | 58.494 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
910 | 920 | 9.537848 | GTAATTTTAATGACGTACAACCAGAAG | 57.462 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
911 | 921 | 5.600908 | TTTAATGACGTACAACCAGAAGC | 57.399 | 39.130 | 0.00 | 0.00 | 0.00 | 3.86 |
912 | 922 | 2.831685 | ATGACGTACAACCAGAAGCA | 57.168 | 45.000 | 0.00 | 0.00 | 0.00 | 3.91 |
913 | 923 | 1.860676 | TGACGTACAACCAGAAGCAC | 58.139 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
914 | 924 | 1.411246 | TGACGTACAACCAGAAGCACT | 59.589 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
915 | 925 | 2.624364 | TGACGTACAACCAGAAGCACTA | 59.376 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
916 | 926 | 3.243336 | GACGTACAACCAGAAGCACTAG | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
917 | 927 | 2.626743 | ACGTACAACCAGAAGCACTAGT | 59.373 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
918 | 928 | 3.243336 | CGTACAACCAGAAGCACTAGTC | 58.757 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
919 | 929 | 3.305131 | CGTACAACCAGAAGCACTAGTCA | 60.305 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
920 | 930 | 3.838244 | ACAACCAGAAGCACTAGTCAA | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
921 | 931 | 4.150897 | ACAACCAGAAGCACTAGTCAAA | 57.849 | 40.909 | 0.00 | 0.00 | 0.00 | 2.69 |
922 | 932 | 4.523083 | ACAACCAGAAGCACTAGTCAAAA | 58.477 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
923 | 933 | 5.133221 | ACAACCAGAAGCACTAGTCAAAAT | 58.867 | 37.500 | 0.00 | 0.00 | 0.00 | 1.82 |
924 | 934 | 5.594317 | ACAACCAGAAGCACTAGTCAAAATT | 59.406 | 36.000 | 0.00 | 0.00 | 0.00 | 1.82 |
925 | 935 | 6.770785 | ACAACCAGAAGCACTAGTCAAAATTA | 59.229 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
926 | 936 | 7.448469 | ACAACCAGAAGCACTAGTCAAAATTAT | 59.552 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
927 | 937 | 7.617041 | ACCAGAAGCACTAGTCAAAATTATC | 57.383 | 36.000 | 0.00 | 0.00 | 0.00 | 1.75 |
928 | 938 | 7.168219 | ACCAGAAGCACTAGTCAAAATTATCA | 58.832 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
929 | 939 | 7.665559 | ACCAGAAGCACTAGTCAAAATTATCAA | 59.334 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
930 | 940 | 8.514594 | CCAGAAGCACTAGTCAAAATTATCAAA | 58.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
935 | 945 | 9.143631 | AGCACTAGTCAAAATTATCAAATTTGC | 57.856 | 29.630 | 13.54 | 0.00 | 43.04 | 3.68 |
936 | 946 | 8.382875 | GCACTAGTCAAAATTATCAAATTTGCC | 58.617 | 33.333 | 13.54 | 0.00 | 43.04 | 4.52 |
937 | 947 | 8.872845 | CACTAGTCAAAATTATCAAATTTGCCC | 58.127 | 33.333 | 13.54 | 0.00 | 43.04 | 5.36 |
938 | 948 | 8.592809 | ACTAGTCAAAATTATCAAATTTGCCCA | 58.407 | 29.630 | 13.54 | 0.00 | 43.04 | 5.36 |
939 | 949 | 9.434420 | CTAGTCAAAATTATCAAATTTGCCCAA | 57.566 | 29.630 | 13.54 | 7.25 | 43.04 | 4.12 |
940 | 950 | 8.688747 | AGTCAAAATTATCAAATTTGCCCAAA | 57.311 | 26.923 | 13.54 | 5.27 | 43.04 | 3.28 |
941 | 951 | 9.299465 | AGTCAAAATTATCAAATTTGCCCAAAT | 57.701 | 25.926 | 13.54 | 4.11 | 43.04 | 2.32 |
942 | 952 | 9.558648 | GTCAAAATTATCAAATTTGCCCAAATC | 57.441 | 29.630 | 13.54 | 0.00 | 43.04 | 2.17 |
943 | 953 | 9.517868 | TCAAAATTATCAAATTTGCCCAAATCT | 57.482 | 25.926 | 13.54 | 0.00 | 43.04 | 2.40 |
944 | 954 | 9.777575 | CAAAATTATCAAATTTGCCCAAATCTC | 57.222 | 29.630 | 13.54 | 0.00 | 43.04 | 2.75 |
945 | 955 | 8.510243 | AAATTATCAAATTTGCCCAAATCTCC | 57.490 | 30.769 | 13.54 | 0.00 | 42.41 | 3.71 |
946 | 956 | 6.617782 | TTATCAAATTTGCCCAAATCTCCA | 57.382 | 33.333 | 13.54 | 0.00 | 39.88 | 3.86 |
947 | 957 | 4.540359 | TCAAATTTGCCCAAATCTCCAG | 57.460 | 40.909 | 13.54 | 0.00 | 39.88 | 3.86 |
948 | 958 | 3.004862 | CAAATTTGCCCAAATCTCCAGC | 58.995 | 45.455 | 5.01 | 0.00 | 39.88 | 4.85 |
949 | 959 | 1.941377 | ATTTGCCCAAATCTCCAGCA | 58.059 | 45.000 | 0.57 | 0.00 | 36.34 | 4.41 |
950 | 960 | 1.259609 | TTTGCCCAAATCTCCAGCAG | 58.740 | 50.000 | 0.00 | 0.00 | 34.45 | 4.24 |
951 | 961 | 1.252904 | TTGCCCAAATCTCCAGCAGC | 61.253 | 55.000 | 0.00 | 0.00 | 34.45 | 5.25 |
952 | 962 | 2.421399 | GCCCAAATCTCCAGCAGCC | 61.421 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
953 | 963 | 1.000521 | CCCAAATCTCCAGCAGCCA | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
954 | 964 | 1.318158 | CCCAAATCTCCAGCAGCCAC | 61.318 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
955 | 965 | 1.318158 | CCAAATCTCCAGCAGCCACC | 61.318 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
956 | 966 | 0.323178 | CAAATCTCCAGCAGCCACCT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
957 | 967 | 0.034670 | AAATCTCCAGCAGCCACCTC | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
958 | 968 | 1.919600 | AATCTCCAGCAGCCACCTCC | 61.920 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
959 | 969 | 4.106925 | CTCCAGCAGCCACCTCCC | 62.107 | 72.222 | 0.00 | 0.00 | 0.00 | 4.30 |
1007 | 1017 | 3.188786 | GTGCGGCCAGATGACGAC | 61.189 | 66.667 | 2.24 | 0.00 | 0.00 | 4.34 |
1034 | 1044 | 2.041265 | AGGCCTGTCCCCCAGTAG | 59.959 | 66.667 | 3.11 | 0.00 | 39.74 | 2.57 |
1037 | 1047 | 2.301738 | GCCTGTCCCCCAGTAGCTT | 61.302 | 63.158 | 0.00 | 0.00 | 39.74 | 3.74 |
1044 | 1054 | 0.974010 | CCCCCAGTAGCTTGGTCGTA | 60.974 | 60.000 | 3.76 | 0.00 | 36.45 | 3.43 |
1050 | 1064 | 3.055080 | TAGCTTGGTCGTACCGGCG | 62.055 | 63.158 | 0.00 | 0.00 | 42.58 | 6.46 |
1081 | 1095 | 2.380410 | CCGTCCTTCTTTGCCGTCG | 61.380 | 63.158 | 0.00 | 0.00 | 0.00 | 5.12 |
1082 | 1096 | 1.663702 | CGTCCTTCTTTGCCGTCGT | 60.664 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
1084 | 1098 | 0.599204 | GTCCTTCTTTGCCGTCGTCA | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1101 | 1115 | 2.022902 | ATCGACGACAGCGCTACG | 59.977 | 61.111 | 26.42 | 26.42 | 42.48 | 3.51 |
1103 | 1117 | 4.456253 | CGACGACAGCGCTACGGT | 62.456 | 66.667 | 29.48 | 19.66 | 42.48 | 4.83 |
1151 | 1171 | 2.125673 | CGACACGGGTGGACATCC | 60.126 | 66.667 | 0.00 | 0.00 | 34.19 | 3.51 |
1211 | 1231 | 0.887387 | CGGCCCAAGTTCGAGGAAAA | 60.887 | 55.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1221 | 1241 | 1.741770 | CGAGGAAAAGACCCCAGCG | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 5.18 |
1306 | 1329 | 3.785499 | GAAACGGCGCTTCGGGTC | 61.785 | 66.667 | 6.90 | 1.39 | 0.00 | 4.46 |
1309 | 1332 | 2.438951 | AAACGGCGCTTCGGGTCTTA | 62.439 | 55.000 | 6.90 | 0.00 | 0.00 | 2.10 |
1310 | 1333 | 2.125832 | CGGCGCTTCGGGTCTTAA | 60.126 | 61.111 | 7.64 | 0.00 | 0.00 | 1.85 |
1315 | 1347 | 1.593469 | GCGCTTCGGGTCTTAAGATTC | 59.407 | 52.381 | 8.75 | 4.47 | 0.00 | 2.52 |
1333 | 1365 | 4.509737 | GGGTAGCTGGTCGCCGTC | 62.510 | 72.222 | 0.00 | 0.00 | 40.39 | 4.79 |
1335 | 1367 | 3.450115 | GTAGCTGGTCGCCGTCCT | 61.450 | 66.667 | 0.00 | 0.00 | 40.39 | 3.85 |
1336 | 1368 | 3.138798 | TAGCTGGTCGCCGTCCTC | 61.139 | 66.667 | 0.00 | 0.00 | 40.39 | 3.71 |
1339 | 1371 | 3.129502 | CTGGTCGCCGTCCTCGTA | 61.130 | 66.667 | 1.46 | 0.00 | 35.01 | 3.43 |
1340 | 1372 | 3.392595 | CTGGTCGCCGTCCTCGTAC | 62.393 | 68.421 | 1.46 | 0.00 | 35.01 | 3.67 |
1341 | 1373 | 3.434319 | GGTCGCCGTCCTCGTACA | 61.434 | 66.667 | 0.00 | 0.00 | 35.01 | 2.90 |
1342 | 1374 | 2.099831 | GTCGCCGTCCTCGTACAG | 59.900 | 66.667 | 0.00 | 0.00 | 35.01 | 2.74 |
1343 | 1375 | 2.046988 | TCGCCGTCCTCGTACAGA | 60.047 | 61.111 | 0.00 | 0.00 | 35.01 | 3.41 |
1344 | 1376 | 2.099831 | CGCCGTCCTCGTACAGAC | 59.900 | 66.667 | 0.00 | 0.00 | 35.01 | 3.51 |
1345 | 1377 | 2.683859 | CGCCGTCCTCGTACAGACA | 61.684 | 63.158 | 8.04 | 0.00 | 33.08 | 3.41 |
1346 | 1378 | 1.154073 | GCCGTCCTCGTACAGACAC | 60.154 | 63.158 | 8.04 | 0.00 | 33.08 | 3.67 |
1347 | 1379 | 1.505353 | CCGTCCTCGTACAGACACC | 59.495 | 63.158 | 8.04 | 0.00 | 33.08 | 4.16 |
1348 | 1380 | 0.959372 | CCGTCCTCGTACAGACACCT | 60.959 | 60.000 | 8.04 | 0.00 | 33.08 | 4.00 |
1349 | 1381 | 0.447011 | CGTCCTCGTACAGACACCTC | 59.553 | 60.000 | 8.04 | 0.00 | 33.08 | 3.85 |
1353 | 1385 | 0.447011 | CTCGTACAGACACCTCCGAC | 59.553 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
1368 | 1400 | 0.878523 | CCGACAAAGGTGCGTCTTCA | 60.879 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1415 | 1447 | 2.456119 | CGGCCGTCACATCTGAAGC | 61.456 | 63.158 | 19.50 | 0.00 | 0.00 | 3.86 |
1422 | 1454 | 0.745486 | TCACATCTGAAGCCATGCCG | 60.745 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1454 | 1486 | 1.074872 | CGGCGGAAACTAGTTCGTCC | 61.075 | 60.000 | 8.95 | 12.09 | 37.08 | 4.79 |
1461 | 1493 | 2.719426 | AACTAGTTCGTCCGTCCTTG | 57.281 | 50.000 | 1.12 | 0.00 | 0.00 | 3.61 |
1462 | 1494 | 0.886563 | ACTAGTTCGTCCGTCCTTGG | 59.113 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
1485 | 1517 | 0.319641 | GACCAGTTCGCTTCCTTCGT | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1486 | 1518 | 0.600255 | ACCAGTTCGCTTCCTTCGTG | 60.600 | 55.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1494 | 1526 | 1.351153 | GCTTCCTTCGTGTCAGTAGC | 58.649 | 55.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1524 | 1556 | 1.721664 | CCTCCATGGCTGTTGATGCG | 61.722 | 60.000 | 6.96 | 0.00 | 0.00 | 4.73 |
1532 | 1564 | 0.730494 | GCTGTTGATGCGTTGAAGGC | 60.730 | 55.000 | 2.45 | 2.45 | 0.00 | 4.35 |
1536 | 1568 | 1.243342 | TTGATGCGTTGAAGGCAGGG | 61.243 | 55.000 | 17.74 | 0.00 | 42.60 | 4.45 |
1559 | 1591 | 1.270041 | GGACCTGAAGATCGCCATCTC | 60.270 | 57.143 | 0.00 | 0.00 | 38.55 | 2.75 |
1560 | 1592 | 1.410517 | GACCTGAAGATCGCCATCTCA | 59.589 | 52.381 | 0.00 | 0.00 | 38.55 | 3.27 |
1578 | 1610 | 3.133946 | GAGGATCTCCCACTCGGC | 58.866 | 66.667 | 0.00 | 0.00 | 37.41 | 5.54 |
1748 | 2640 | 1.102154 | ACGCAGTCCAGAGATCTGAG | 58.898 | 55.000 | 11.44 | 2.20 | 41.85 | 3.35 |
1761 | 2653 | 0.529337 | ATCTGAGCCTGTCGATTGCG | 60.529 | 55.000 | 0.00 | 0.00 | 39.35 | 4.85 |
1781 | 2673 | 2.165641 | CGAGGGACACAGCTATGTTACA | 59.834 | 50.000 | 0.00 | 0.00 | 37.65 | 2.41 |
1795 | 2687 | 5.334260 | GCTATGTTACACTAGAGCTAGACCG | 60.334 | 48.000 | 11.28 | 2.56 | 36.97 | 4.79 |
1798 | 2690 | 5.491070 | TGTTACACTAGAGCTAGACCGTTA | 58.509 | 41.667 | 11.28 | 0.00 | 36.97 | 3.18 |
1804 | 2696 | 4.756135 | ACTAGAGCTAGACCGTTACATAGC | 59.244 | 45.833 | 11.28 | 0.00 | 40.74 | 2.97 |
1830 | 2722 | 8.865001 | CAACTACTGTAGCTTAGTCAAGAAATC | 58.135 | 37.037 | 14.55 | 0.00 | 33.20 | 2.17 |
1877 | 2769 | 7.016153 | TGTCTTGTACTGGATTTAGTGGATT | 57.984 | 36.000 | 0.00 | 0.00 | 32.19 | 3.01 |
1934 | 2826 | 2.335316 | ACTGCCTTCGGTGTTGTTTA | 57.665 | 45.000 | 0.00 | 0.00 | 0.00 | 2.01 |
1962 | 2854 | 9.232082 | CAAAGTTGTTTAATGTCGAATCTTCAA | 57.768 | 29.630 | 0.00 | 0.00 | 0.00 | 2.69 |
1973 | 2865 | 5.050091 | TGTCGAATCTTCAAAGTGCTCTTTC | 60.050 | 40.000 | 10.72 | 0.00 | 41.31 | 2.62 |
1990 | 2882 | 5.637387 | GCTCTTTCTTTGTGTTGTTGGAAAA | 59.363 | 36.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1994 | 2886 | 4.677584 | TCTTTGTGTTGTTGGAAAATCCG | 58.322 | 39.130 | 0.00 | 0.00 | 40.17 | 4.18 |
2035 | 3035 | 1.134280 | TGGTGGGGTTTTTGTTGCATG | 60.134 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
2057 | 3057 | 6.729690 | TGGAATTCCAACAAGTTCTCATTT | 57.270 | 33.333 | 25.13 | 0.00 | 44.35 | 2.32 |
2058 | 3058 | 7.123355 | TGGAATTCCAACAAGTTCTCATTTT | 57.877 | 32.000 | 25.13 | 0.00 | 44.35 | 1.82 |
2059 | 3059 | 7.209475 | TGGAATTCCAACAAGTTCTCATTTTC | 58.791 | 34.615 | 25.13 | 0.00 | 44.35 | 2.29 |
2060 | 3060 | 7.069826 | TGGAATTCCAACAAGTTCTCATTTTCT | 59.930 | 33.333 | 25.13 | 0.00 | 44.35 | 2.52 |
2061 | 3061 | 7.928167 | GGAATTCCAACAAGTTCTCATTTTCTT | 59.072 | 33.333 | 20.04 | 0.00 | 35.64 | 2.52 |
2062 | 3062 | 9.317936 | GAATTCCAACAAGTTCTCATTTTCTTT | 57.682 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
2063 | 3063 | 9.671279 | AATTCCAACAAGTTCTCATTTTCTTTT | 57.329 | 25.926 | 0.00 | 0.00 | 0.00 | 2.27 |
2064 | 3064 | 9.671279 | ATTCCAACAAGTTCTCATTTTCTTTTT | 57.329 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
2101 | 3101 | 9.305925 | ACAAGTTCTCATTTTCAAATTCACTTC | 57.694 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2132 | 3132 | 6.524933 | CGACAGAAGATCAGTAACTGTTACAG | 59.475 | 42.308 | 27.12 | 21.05 | 41.01 | 2.74 |
2187 | 3187 | 3.564225 | GGAGACTAATTGTTTATGGCCCG | 59.436 | 47.826 | 0.00 | 0.00 | 0.00 | 6.13 |
2306 | 3306 | 6.307800 | GTGTATGTGTATGTTGCCAAATTCAC | 59.692 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
2344 | 3344 | 3.302350 | GCTTCGCTCTCTGAAATGAATCG | 60.302 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
2355 | 3355 | 6.566141 | TCTGAAATGAATCGGTATAACGACA | 58.434 | 36.000 | 16.46 | 10.55 | 46.64 | 4.35 |
2356 | 3356 | 7.036829 | TCTGAAATGAATCGGTATAACGACAA | 58.963 | 34.615 | 16.46 | 4.32 | 46.64 | 3.18 |
2357 | 3357 | 6.996106 | TGAAATGAATCGGTATAACGACAAC | 58.004 | 36.000 | 16.46 | 10.22 | 46.64 | 3.32 |
2359 | 3359 | 6.583912 | AATGAATCGGTATAACGACAACTG | 57.416 | 37.500 | 16.46 | 0.00 | 46.64 | 3.16 |
2435 | 3435 | 5.865085 | TGGTATAGTAATGCACAATCCTCC | 58.135 | 41.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2439 | 3439 | 3.733337 | AGTAATGCACAATCCTCCGATC | 58.267 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2479 | 3479 | 6.595326 | TGTGAGTCTTTATTAGTGCTGATTGG | 59.405 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
2517 | 3517 | 2.806608 | ACTCAACCTTGCATTGCTTG | 57.193 | 45.000 | 10.49 | 6.14 | 0.00 | 4.01 |
2550 | 3550 | 9.847224 | GTAAATTCTGACCATTTTCCTCCTATA | 57.153 | 33.333 | 0.00 | 0.00 | 0.00 | 1.31 |
2589 | 3589 | 4.762251 | ACTATTCAGAGGGCAAGTTTGTTC | 59.238 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2634 | 3634 | 3.305964 | CTGATGCTGTTTTGCTGACTTG | 58.694 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
2658 | 6879 | 3.477210 | AGTTCTGTTTCTGTCTGGGAC | 57.523 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
2685 | 6906 | 0.614812 | TTAGCCAGTCTCATGCAGCA | 59.385 | 50.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2703 | 6924 | 1.398390 | GCAGCAATTCCGTCTACCAAG | 59.602 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
2764 | 6985 | 2.294979 | AGTTGACACCGGAAAAGGTTC | 58.705 | 47.619 | 9.46 | 0.00 | 43.00 | 3.62 |
2767 | 6988 | 1.153127 | ACACCGGAAAAGGTTCGCA | 60.153 | 52.632 | 9.46 | 0.00 | 43.00 | 5.10 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
56 | 57 | 3.050339 | CACACCAAATGCCCGCTT | 58.950 | 55.556 | 0.00 | 0.00 | 0.00 | 4.68 |
518 | 519 | 4.364409 | GACGTGGTTTCGCCGTGC | 62.364 | 66.667 | 0.00 | 0.00 | 41.21 | 5.34 |
534 | 535 | 3.162666 | ACGAGAATAGGCCCATATTCGA | 58.837 | 45.455 | 19.04 | 0.00 | 43.79 | 3.71 |
585 | 586 | 1.123246 | AATTGGCCCACTTTGCAGCT | 61.123 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
687 | 689 | 1.021968 | GGACGCATAAAAATCGCCCT | 58.978 | 50.000 | 0.00 | 0.00 | 0.00 | 5.19 |
743 | 753 | 2.587753 | TAGCGCGGTGGCTAATGC | 60.588 | 61.111 | 23.02 | 0.00 | 42.26 | 3.56 |
744 | 754 | 2.585869 | CGTAGCGCGGTGGCTAATG | 61.586 | 63.158 | 23.02 | 1.36 | 46.31 | 1.90 |
745 | 755 | 2.279252 | CGTAGCGCGGTGGCTAAT | 60.279 | 61.111 | 23.02 | 0.00 | 46.31 | 1.73 |
762 | 772 | 2.901249 | TCCTATAACGCAACTGAAGGC | 58.099 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
763 | 773 | 6.812160 | GGTATATCCTATAACGCAACTGAAGG | 59.188 | 42.308 | 0.00 | 0.00 | 0.00 | 3.46 |
764 | 774 | 7.375834 | TGGTATATCCTATAACGCAACTGAAG | 58.624 | 38.462 | 0.00 | 0.00 | 37.07 | 3.02 |
765 | 775 | 7.014905 | ACTGGTATATCCTATAACGCAACTGAA | 59.985 | 37.037 | 0.00 | 0.00 | 37.07 | 3.02 |
766 | 776 | 6.492429 | ACTGGTATATCCTATAACGCAACTGA | 59.508 | 38.462 | 0.00 | 0.00 | 37.07 | 3.41 |
767 | 777 | 6.688578 | ACTGGTATATCCTATAACGCAACTG | 58.311 | 40.000 | 0.00 | 0.00 | 37.07 | 3.16 |
768 | 778 | 6.912951 | ACTGGTATATCCTATAACGCAACT | 57.087 | 37.500 | 0.00 | 0.00 | 37.07 | 3.16 |
771 | 781 | 9.910267 | TCTTATACTGGTATATCCTATAACGCA | 57.090 | 33.333 | 1.91 | 0.00 | 37.07 | 5.24 |
780 | 790 | 9.668497 | GGATTTGGTTCTTATACTGGTATATCC | 57.332 | 37.037 | 1.91 | 0.00 | 0.00 | 2.59 |
783 | 793 | 9.841295 | GTTGGATTTGGTTCTTATACTGGTATA | 57.159 | 33.333 | 0.00 | 0.00 | 0.00 | 1.47 |
784 | 794 | 7.497909 | CGTTGGATTTGGTTCTTATACTGGTAT | 59.502 | 37.037 | 0.00 | 0.00 | 0.00 | 2.73 |
785 | 795 | 6.819649 | CGTTGGATTTGGTTCTTATACTGGTA | 59.180 | 38.462 | 0.00 | 0.00 | 0.00 | 3.25 |
786 | 796 | 5.646360 | CGTTGGATTTGGTTCTTATACTGGT | 59.354 | 40.000 | 0.00 | 0.00 | 0.00 | 4.00 |
787 | 797 | 5.065988 | CCGTTGGATTTGGTTCTTATACTGG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 4.00 |
788 | 798 | 5.065988 | CCCGTTGGATTTGGTTCTTATACTG | 59.934 | 44.000 | 0.00 | 0.00 | 0.00 | 2.74 |
789 | 799 | 5.045432 | TCCCGTTGGATTTGGTTCTTATACT | 60.045 | 40.000 | 0.00 | 0.00 | 35.03 | 2.12 |
790 | 800 | 5.187687 | TCCCGTTGGATTTGGTTCTTATAC | 58.812 | 41.667 | 0.00 | 0.00 | 35.03 | 1.47 |
791 | 801 | 5.438698 | TCCCGTTGGATTTGGTTCTTATA | 57.561 | 39.130 | 0.00 | 0.00 | 35.03 | 0.98 |
792 | 802 | 4.310022 | TCCCGTTGGATTTGGTTCTTAT | 57.690 | 40.909 | 0.00 | 0.00 | 35.03 | 1.73 |
793 | 803 | 3.791953 | TCCCGTTGGATTTGGTTCTTA | 57.208 | 42.857 | 0.00 | 0.00 | 35.03 | 2.10 |
794 | 804 | 2.668144 | TCCCGTTGGATTTGGTTCTT | 57.332 | 45.000 | 0.00 | 0.00 | 35.03 | 2.52 |
805 | 815 | 4.055360 | GGTTTTTCTCAAAATCCCGTTGG | 58.945 | 43.478 | 0.00 | 0.00 | 35.25 | 3.77 |
806 | 816 | 3.733727 | CGGTTTTTCTCAAAATCCCGTTG | 59.266 | 43.478 | 10.15 | 0.00 | 38.94 | 4.10 |
807 | 817 | 3.633065 | TCGGTTTTTCTCAAAATCCCGTT | 59.367 | 39.130 | 14.78 | 0.00 | 41.79 | 4.44 |
808 | 818 | 3.215975 | TCGGTTTTTCTCAAAATCCCGT | 58.784 | 40.909 | 14.78 | 0.00 | 41.79 | 5.28 |
809 | 819 | 3.907894 | TCGGTTTTTCTCAAAATCCCG | 57.092 | 42.857 | 11.36 | 11.36 | 42.14 | 5.14 |
810 | 820 | 4.304110 | GGTTCGGTTTTTCTCAAAATCCC | 58.696 | 43.478 | 4.10 | 0.00 | 37.07 | 3.85 |
811 | 821 | 3.978855 | CGGTTCGGTTTTTCTCAAAATCC | 59.021 | 43.478 | 0.45 | 0.45 | 37.04 | 3.01 |
812 | 822 | 4.603985 | ACGGTTCGGTTTTTCTCAAAATC | 58.396 | 39.130 | 0.00 | 0.00 | 34.35 | 2.17 |
813 | 823 | 4.642445 | ACGGTTCGGTTTTTCTCAAAAT | 57.358 | 36.364 | 0.00 | 0.00 | 34.35 | 1.82 |
814 | 824 | 4.156373 | AGAACGGTTCGGTTTTTCTCAAAA | 59.844 | 37.500 | 14.70 | 0.00 | 34.02 | 2.44 |
815 | 825 | 3.690628 | AGAACGGTTCGGTTTTTCTCAAA | 59.309 | 39.130 | 14.70 | 0.00 | 34.02 | 2.69 |
816 | 826 | 3.064271 | CAGAACGGTTCGGTTTTTCTCAA | 59.936 | 43.478 | 14.70 | 0.00 | 34.02 | 3.02 |
817 | 827 | 2.610374 | CAGAACGGTTCGGTTTTTCTCA | 59.390 | 45.455 | 14.70 | 0.00 | 34.02 | 3.27 |
818 | 828 | 2.610833 | ACAGAACGGTTCGGTTTTTCTC | 59.389 | 45.455 | 18.81 | 0.00 | 34.38 | 2.87 |
819 | 829 | 2.635714 | ACAGAACGGTTCGGTTTTTCT | 58.364 | 42.857 | 18.81 | 0.00 | 34.38 | 2.52 |
820 | 830 | 3.357021 | GAACAGAACGGTTCGGTTTTTC | 58.643 | 45.455 | 30.33 | 19.38 | 45.72 | 2.29 |
821 | 831 | 3.409851 | GAACAGAACGGTTCGGTTTTT | 57.590 | 42.857 | 30.33 | 15.91 | 45.72 | 1.94 |
828 | 838 | 4.457949 | ACCCATAAATGAACAGAACGGTTC | 59.542 | 41.667 | 12.91 | 12.91 | 45.75 | 3.62 |
829 | 839 | 4.217550 | CACCCATAAATGAACAGAACGGTT | 59.782 | 41.667 | 0.00 | 0.00 | 0.00 | 4.44 |
830 | 840 | 3.756434 | CACCCATAAATGAACAGAACGGT | 59.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.83 |
831 | 841 | 4.006989 | TCACCCATAAATGAACAGAACGG | 58.993 | 43.478 | 0.00 | 0.00 | 0.00 | 4.44 |
832 | 842 | 5.818136 | ATCACCCATAAATGAACAGAACG | 57.182 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
833 | 843 | 7.285401 | ACCATATCACCCATAAATGAACAGAAC | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
834 | 844 | 7.285172 | CACCATATCACCCATAAATGAACAGAA | 59.715 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
835 | 845 | 6.772233 | CACCATATCACCCATAAATGAACAGA | 59.228 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
836 | 846 | 6.772233 | TCACCATATCACCCATAAATGAACAG | 59.228 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
837 | 847 | 6.667661 | TCACCATATCACCCATAAATGAACA | 58.332 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
838 | 848 | 6.772716 | ACTCACCATATCACCCATAAATGAAC | 59.227 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
839 | 849 | 6.910191 | ACTCACCATATCACCCATAAATGAA | 58.090 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
840 | 850 | 6.514012 | ACTCACCATATCACCCATAAATGA | 57.486 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
841 | 851 | 8.868522 | ATTACTCACCATATCACCCATAAATG | 57.131 | 34.615 | 0.00 | 0.00 | 0.00 | 2.32 |
842 | 852 | 9.881773 | AAATTACTCACCATATCACCCATAAAT | 57.118 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
845 | 855 | 9.958180 | CATAAATTACTCACCATATCACCCATA | 57.042 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
846 | 856 | 8.448008 | ACATAAATTACTCACCATATCACCCAT | 58.552 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
847 | 857 | 7.811282 | ACATAAATTACTCACCATATCACCCA | 58.189 | 34.615 | 0.00 | 0.00 | 0.00 | 4.51 |
848 | 858 | 7.936847 | TGACATAAATTACTCACCATATCACCC | 59.063 | 37.037 | 0.00 | 0.00 | 0.00 | 4.61 |
849 | 859 | 8.902540 | TGACATAAATTACTCACCATATCACC | 57.097 | 34.615 | 0.00 | 0.00 | 0.00 | 4.02 |
854 | 864 | 9.093970 | CGAAGTTGACATAAATTACTCACCATA | 57.906 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
855 | 865 | 7.822334 | TCGAAGTTGACATAAATTACTCACCAT | 59.178 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
856 | 866 | 7.156000 | TCGAAGTTGACATAAATTACTCACCA | 58.844 | 34.615 | 0.00 | 0.00 | 0.00 | 4.17 |
857 | 867 | 7.201530 | CCTCGAAGTTGACATAAATTACTCACC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 4.02 |
858 | 868 | 7.201530 | CCCTCGAAGTTGACATAAATTACTCAC | 60.202 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
859 | 869 | 6.816640 | CCCTCGAAGTTGACATAAATTACTCA | 59.183 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
860 | 870 | 6.817140 | ACCCTCGAAGTTGACATAAATTACTC | 59.183 | 38.462 | 0.00 | 0.00 | 0.00 | 2.59 |
861 | 871 | 6.708285 | ACCCTCGAAGTTGACATAAATTACT | 58.292 | 36.000 | 0.00 | 0.00 | 0.00 | 2.24 |
862 | 872 | 6.980051 | ACCCTCGAAGTTGACATAAATTAC | 57.020 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
863 | 873 | 9.675464 | AATTACCCTCGAAGTTGACATAAATTA | 57.325 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
864 | 874 | 8.575649 | AATTACCCTCGAAGTTGACATAAATT | 57.424 | 30.769 | 0.00 | 0.00 | 0.00 | 1.82 |
865 | 875 | 8.575649 | AAATTACCCTCGAAGTTGACATAAAT | 57.424 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
866 | 876 | 7.989416 | AAATTACCCTCGAAGTTGACATAAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
867 | 877 | 7.989416 | AAAATTACCCTCGAAGTTGACATAA | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 1.90 |
868 | 878 | 9.675464 | ATTAAAATTACCCTCGAAGTTGACATA | 57.325 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
869 | 879 | 7.989416 | TTAAAATTACCCTCGAAGTTGACAT | 57.011 | 32.000 | 0.00 | 0.00 | 0.00 | 3.06 |
870 | 880 | 7.662258 | TCATTAAAATTACCCTCGAAGTTGACA | 59.338 | 33.333 | 0.00 | 0.00 | 0.00 | 3.58 |
871 | 881 | 7.961283 | GTCATTAAAATTACCCTCGAAGTTGAC | 59.039 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
872 | 882 | 7.148540 | CGTCATTAAAATTACCCTCGAAGTTGA | 60.149 | 37.037 | 0.00 | 0.00 | 0.00 | 3.18 |
873 | 883 | 6.959311 | CGTCATTAAAATTACCCTCGAAGTTG | 59.041 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
874 | 884 | 6.652062 | ACGTCATTAAAATTACCCTCGAAGTT | 59.348 | 34.615 | 0.00 | 0.00 | 0.00 | 2.66 |
875 | 885 | 6.168389 | ACGTCATTAAAATTACCCTCGAAGT | 58.832 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
876 | 886 | 6.657836 | ACGTCATTAAAATTACCCTCGAAG | 57.342 | 37.500 | 0.00 | 0.00 | 0.00 | 3.79 |
877 | 887 | 7.095910 | TGTACGTCATTAAAATTACCCTCGAA | 58.904 | 34.615 | 0.00 | 0.00 | 0.00 | 3.71 |
878 | 888 | 6.629128 | TGTACGTCATTAAAATTACCCTCGA | 58.371 | 36.000 | 0.00 | 0.00 | 0.00 | 4.04 |
879 | 889 | 6.890663 | TGTACGTCATTAAAATTACCCTCG | 57.109 | 37.500 | 0.00 | 0.00 | 0.00 | 4.63 |
880 | 890 | 7.119553 | TGGTTGTACGTCATTAAAATTACCCTC | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 4.30 |
881 | 891 | 6.941436 | TGGTTGTACGTCATTAAAATTACCCT | 59.059 | 34.615 | 0.00 | 0.00 | 0.00 | 4.34 |
882 | 892 | 7.119553 | TCTGGTTGTACGTCATTAAAATTACCC | 59.880 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
883 | 893 | 8.031848 | TCTGGTTGTACGTCATTAAAATTACC | 57.968 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
884 | 894 | 9.537848 | CTTCTGGTTGTACGTCATTAAAATTAC | 57.462 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
885 | 895 | 8.231837 | GCTTCTGGTTGTACGTCATTAAAATTA | 58.768 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
886 | 896 | 7.081976 | GCTTCTGGTTGTACGTCATTAAAATT | 58.918 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
887 | 897 | 6.205853 | TGCTTCTGGTTGTACGTCATTAAAAT | 59.794 | 34.615 | 0.00 | 0.00 | 0.00 | 1.82 |
888 | 898 | 5.527951 | TGCTTCTGGTTGTACGTCATTAAAA | 59.472 | 36.000 | 0.00 | 0.00 | 0.00 | 1.52 |
889 | 899 | 5.049954 | GTGCTTCTGGTTGTACGTCATTAAA | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
890 | 900 | 4.449743 | GTGCTTCTGGTTGTACGTCATTAA | 59.550 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
891 | 901 | 3.991773 | GTGCTTCTGGTTGTACGTCATTA | 59.008 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
892 | 902 | 2.806244 | GTGCTTCTGGTTGTACGTCATT | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
893 | 903 | 2.037251 | AGTGCTTCTGGTTGTACGTCAT | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
894 | 904 | 1.411246 | AGTGCTTCTGGTTGTACGTCA | 59.589 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
895 | 905 | 2.150397 | AGTGCTTCTGGTTGTACGTC | 57.850 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
896 | 906 | 2.626743 | ACTAGTGCTTCTGGTTGTACGT | 59.373 | 45.455 | 0.00 | 0.00 | 34.16 | 3.57 |
897 | 907 | 3.243336 | GACTAGTGCTTCTGGTTGTACG | 58.757 | 50.000 | 0.00 | 0.00 | 37.98 | 3.67 |
898 | 908 | 4.252971 | TGACTAGTGCTTCTGGTTGTAC | 57.747 | 45.455 | 0.00 | 0.00 | 37.98 | 2.90 |
899 | 909 | 4.948341 | TTGACTAGTGCTTCTGGTTGTA | 57.052 | 40.909 | 0.00 | 0.00 | 37.98 | 2.41 |
900 | 910 | 3.838244 | TTGACTAGTGCTTCTGGTTGT | 57.162 | 42.857 | 0.00 | 0.00 | 37.98 | 3.32 |
901 | 911 | 5.695851 | ATTTTGACTAGTGCTTCTGGTTG | 57.304 | 39.130 | 0.00 | 0.00 | 37.98 | 3.77 |
902 | 912 | 7.665559 | TGATAATTTTGACTAGTGCTTCTGGTT | 59.334 | 33.333 | 0.00 | 0.00 | 37.98 | 3.67 |
903 | 913 | 7.168219 | TGATAATTTTGACTAGTGCTTCTGGT | 58.832 | 34.615 | 0.00 | 0.00 | 40.54 | 4.00 |
904 | 914 | 7.615582 | TGATAATTTTGACTAGTGCTTCTGG | 57.384 | 36.000 | 0.00 | 0.00 | 0.00 | 3.86 |
909 | 919 | 9.143631 | GCAAATTTGATAATTTTGACTAGTGCT | 57.856 | 29.630 | 22.31 | 0.00 | 40.97 | 4.40 |
910 | 920 | 8.382875 | GGCAAATTTGATAATTTTGACTAGTGC | 58.617 | 33.333 | 22.31 | 0.00 | 40.97 | 4.40 |
911 | 921 | 8.872845 | GGGCAAATTTGATAATTTTGACTAGTG | 58.127 | 33.333 | 22.31 | 0.00 | 40.97 | 2.74 |
912 | 922 | 8.592809 | TGGGCAAATTTGATAATTTTGACTAGT | 58.407 | 29.630 | 22.31 | 0.00 | 40.97 | 2.57 |
913 | 923 | 9.434420 | TTGGGCAAATTTGATAATTTTGACTAG | 57.566 | 29.630 | 22.31 | 0.00 | 40.97 | 2.57 |
914 | 924 | 9.784531 | TTTGGGCAAATTTGATAATTTTGACTA | 57.215 | 25.926 | 22.31 | 5.98 | 40.97 | 2.59 |
915 | 925 | 8.688747 | TTTGGGCAAATTTGATAATTTTGACT | 57.311 | 26.923 | 22.31 | 0.00 | 40.97 | 3.41 |
916 | 926 | 9.558648 | GATTTGGGCAAATTTGATAATTTTGAC | 57.441 | 29.630 | 22.31 | 8.77 | 40.97 | 3.18 |
917 | 927 | 9.517868 | AGATTTGGGCAAATTTGATAATTTTGA | 57.482 | 25.926 | 22.31 | 0.00 | 40.97 | 2.69 |
918 | 928 | 9.777575 | GAGATTTGGGCAAATTTGATAATTTTG | 57.222 | 29.630 | 22.31 | 0.00 | 40.97 | 2.44 |
919 | 929 | 8.959548 | GGAGATTTGGGCAAATTTGATAATTTT | 58.040 | 29.630 | 22.31 | 5.14 | 40.97 | 1.82 |
920 | 930 | 8.108364 | TGGAGATTTGGGCAAATTTGATAATTT | 58.892 | 29.630 | 22.31 | 9.32 | 43.09 | 1.82 |
921 | 931 | 7.631933 | TGGAGATTTGGGCAAATTTGATAATT | 58.368 | 30.769 | 22.31 | 8.91 | 40.77 | 1.40 |
922 | 932 | 7.197901 | TGGAGATTTGGGCAAATTTGATAAT | 57.802 | 32.000 | 22.31 | 13.16 | 40.77 | 1.28 |
923 | 933 | 6.617782 | TGGAGATTTGGGCAAATTTGATAA | 57.382 | 33.333 | 22.31 | 9.76 | 40.77 | 1.75 |
924 | 934 | 5.395546 | GCTGGAGATTTGGGCAAATTTGATA | 60.396 | 40.000 | 22.31 | 4.00 | 40.77 | 2.15 |
925 | 935 | 4.624604 | GCTGGAGATTTGGGCAAATTTGAT | 60.625 | 41.667 | 22.31 | 5.70 | 40.77 | 2.57 |
926 | 936 | 3.306919 | GCTGGAGATTTGGGCAAATTTGA | 60.307 | 43.478 | 22.31 | 0.36 | 40.77 | 2.69 |
927 | 937 | 3.004862 | GCTGGAGATTTGGGCAAATTTG | 58.995 | 45.455 | 14.03 | 14.03 | 40.77 | 2.32 |
928 | 938 | 2.638855 | TGCTGGAGATTTGGGCAAATTT | 59.361 | 40.909 | 0.00 | 0.00 | 40.77 | 1.82 |
929 | 939 | 2.235402 | CTGCTGGAGATTTGGGCAAATT | 59.765 | 45.455 | 0.00 | 0.00 | 40.77 | 1.82 |
930 | 940 | 1.829222 | CTGCTGGAGATTTGGGCAAAT | 59.171 | 47.619 | 0.00 | 0.00 | 43.14 | 2.32 |
931 | 941 | 1.259609 | CTGCTGGAGATTTGGGCAAA | 58.740 | 50.000 | 0.00 | 0.00 | 32.43 | 3.68 |
932 | 942 | 1.252904 | GCTGCTGGAGATTTGGGCAA | 61.253 | 55.000 | 0.00 | 0.00 | 32.43 | 4.52 |
933 | 943 | 1.679977 | GCTGCTGGAGATTTGGGCA | 60.680 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
934 | 944 | 2.421399 | GGCTGCTGGAGATTTGGGC | 61.421 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
935 | 945 | 1.000521 | TGGCTGCTGGAGATTTGGG | 60.001 | 57.895 | 0.00 | 0.00 | 0.00 | 4.12 |
936 | 946 | 1.318158 | GGTGGCTGCTGGAGATTTGG | 61.318 | 60.000 | 0.00 | 0.00 | 0.00 | 3.28 |
937 | 947 | 0.323178 | AGGTGGCTGCTGGAGATTTG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 2.32 |
938 | 948 | 0.034670 | GAGGTGGCTGCTGGAGATTT | 60.035 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
939 | 949 | 1.606531 | GAGGTGGCTGCTGGAGATT | 59.393 | 57.895 | 0.00 | 0.00 | 0.00 | 2.40 |
940 | 950 | 2.373707 | GGAGGTGGCTGCTGGAGAT | 61.374 | 63.158 | 0.00 | 0.00 | 0.00 | 2.75 |
941 | 951 | 3.005539 | GGAGGTGGCTGCTGGAGA | 61.006 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
942 | 952 | 4.106925 | GGGAGGTGGCTGCTGGAG | 62.107 | 72.222 | 0.00 | 0.00 | 0.00 | 3.86 |
989 | 999 | 4.794439 | TCGTCATCTGGCCGCACG | 62.794 | 66.667 | 0.00 | 1.55 | 0.00 | 5.34 |
997 | 1007 | 2.579787 | GTCGCCCGTCGTCATCTG | 60.580 | 66.667 | 0.00 | 0.00 | 39.67 | 2.90 |
1065 | 1079 | 0.599204 | TGACGACGGCAAAGAAGGAC | 60.599 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1066 | 1080 | 0.320374 | ATGACGACGGCAAAGAAGGA | 59.680 | 50.000 | 7.85 | 0.00 | 0.00 | 3.36 |
1081 | 1095 | 1.062047 | TAGCGCTGTCGTCGATGAC | 59.938 | 57.895 | 27.30 | 27.30 | 39.37 | 3.06 |
1082 | 1096 | 1.062047 | GTAGCGCTGTCGTCGATGA | 59.938 | 57.895 | 22.90 | 2.39 | 38.14 | 2.92 |
1084 | 1098 | 2.022902 | CGTAGCGCTGTCGTCGAT | 59.977 | 61.111 | 22.90 | 0.00 | 38.14 | 3.59 |
1139 | 1159 | 4.838152 | CGCCTGGATGTCCACCCG | 62.838 | 72.222 | 0.00 | 0.32 | 42.01 | 5.28 |
1193 | 1213 | 0.881796 | CTTTTCCTCGAACTTGGGCC | 59.118 | 55.000 | 0.00 | 0.00 | 0.00 | 5.80 |
1234 | 1254 | 1.293498 | TCGGAGACAGCTTCTTGCC | 59.707 | 57.895 | 0.00 | 0.00 | 44.23 | 4.52 |
1274 | 1297 | 2.646175 | TTTCCAGAGGAGGACGCGG | 61.646 | 63.158 | 12.47 | 0.00 | 37.42 | 6.46 |
1277 | 1300 | 1.215647 | CCGTTTCCAGAGGAGGACG | 59.784 | 63.158 | 13.60 | 13.60 | 40.32 | 4.79 |
1305 | 1328 | 3.371965 | ACCAGCTACCCGAATCTTAAGA | 58.628 | 45.455 | 7.82 | 7.82 | 0.00 | 2.10 |
1306 | 1329 | 3.718815 | GACCAGCTACCCGAATCTTAAG | 58.281 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
1309 | 1332 | 0.460311 | CGACCAGCTACCCGAATCTT | 59.540 | 55.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1310 | 1333 | 2.017559 | GCGACCAGCTACCCGAATCT | 62.018 | 60.000 | 5.20 | 0.00 | 44.04 | 2.40 |
1331 | 1363 | 0.810016 | GGAGGTGTCTGTACGAGGAC | 59.190 | 60.000 | 0.00 | 6.52 | 0.00 | 3.85 |
1332 | 1364 | 0.675837 | CGGAGGTGTCTGTACGAGGA | 60.676 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1333 | 1365 | 0.675837 | TCGGAGGTGTCTGTACGAGG | 60.676 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
1335 | 1367 | 0.250424 | TGTCGGAGGTGTCTGTACGA | 60.250 | 55.000 | 0.00 | 0.00 | 0.00 | 3.43 |
1336 | 1368 | 0.594602 | TTGTCGGAGGTGTCTGTACG | 59.405 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1337 | 1369 | 2.609737 | CCTTTGTCGGAGGTGTCTGTAC | 60.610 | 54.545 | 0.00 | 0.00 | 0.00 | 2.90 |
1338 | 1370 | 1.616865 | CCTTTGTCGGAGGTGTCTGTA | 59.383 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
1339 | 1371 | 0.393077 | CCTTTGTCGGAGGTGTCTGT | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1340 | 1372 | 0.393077 | ACCTTTGTCGGAGGTGTCTG | 59.607 | 55.000 | 0.00 | 0.00 | 45.59 | 3.51 |
1341 | 1373 | 2.836020 | ACCTTTGTCGGAGGTGTCT | 58.164 | 52.632 | 0.00 | 0.00 | 45.59 | 3.41 |
1346 | 1378 | 2.027625 | GACGCACCTTTGTCGGAGG | 61.028 | 63.158 | 0.00 | 0.00 | 40.24 | 4.30 |
1347 | 1379 | 0.600255 | AAGACGCACCTTTGTCGGAG | 60.600 | 55.000 | 0.00 | 0.00 | 40.05 | 4.63 |
1348 | 1380 | 0.599204 | GAAGACGCACCTTTGTCGGA | 60.599 | 55.000 | 0.00 | 0.00 | 40.05 | 4.55 |
1349 | 1381 | 0.878523 | TGAAGACGCACCTTTGTCGG | 60.879 | 55.000 | 0.00 | 0.00 | 40.05 | 4.79 |
1360 | 1392 | 2.507324 | GAGCCGAGGTGAAGACGC | 60.507 | 66.667 | 0.00 | 0.00 | 0.00 | 5.19 |
1407 | 1439 | 2.517875 | GGCGGCATGGCTTCAGAT | 60.518 | 61.111 | 18.09 | 0.00 | 40.72 | 2.90 |
1430 | 1462 | 1.012486 | AACTAGTTTCCGCCGCTTCG | 61.012 | 55.000 | 1.12 | 0.00 | 0.00 | 3.79 |
1435 | 1467 | 1.074872 | GGACGAACTAGTTTCCGCCG | 61.075 | 60.000 | 10.02 | 10.58 | 0.00 | 6.46 |
1440 | 1472 | 2.985139 | CAAGGACGGACGAACTAGTTTC | 59.015 | 50.000 | 10.02 | 4.12 | 0.00 | 2.78 |
1461 | 1493 | 0.673956 | GGAAGCGAACTGGTCCTTCC | 60.674 | 60.000 | 20.04 | 20.04 | 41.99 | 3.46 |
1462 | 1494 | 0.321996 | AGGAAGCGAACTGGTCCTTC | 59.678 | 55.000 | 12.65 | 12.65 | 34.92 | 3.46 |
1485 | 1517 | 1.676916 | GCATCAGCCTTGCTACTGACA | 60.677 | 52.381 | 0.00 | 0.00 | 45.19 | 3.58 |
1486 | 1518 | 1.012841 | GCATCAGCCTTGCTACTGAC | 58.987 | 55.000 | 0.00 | 0.00 | 45.19 | 3.51 |
1508 | 1540 | 0.457166 | CAACGCATCAACAGCCATGG | 60.457 | 55.000 | 7.63 | 7.63 | 0.00 | 3.66 |
1521 | 1553 | 4.577677 | TGCCCTGCCTTCAACGCA | 62.578 | 61.111 | 0.00 | 0.00 | 34.41 | 5.24 |
1524 | 1556 | 1.973812 | GTCCTGCCCTGCCTTCAAC | 60.974 | 63.158 | 0.00 | 0.00 | 0.00 | 3.18 |
1536 | 1568 | 1.522580 | GGCGATCTTCAGGTCCTGC | 60.523 | 63.158 | 14.64 | 0.00 | 0.00 | 4.85 |
1559 | 1591 | 1.743321 | GCCGAGTGGGAGATCCTCTG | 61.743 | 65.000 | 0.00 | 0.00 | 39.29 | 3.35 |
1560 | 1592 | 1.456705 | GCCGAGTGGGAGATCCTCT | 60.457 | 63.158 | 0.00 | 0.00 | 41.66 | 3.69 |
1578 | 1610 | 2.202987 | GCCACATCAGAGGCCTCG | 60.203 | 66.667 | 26.95 | 20.71 | 44.66 | 4.63 |
1588 | 1620 | 1.009829 | AGAATCGCTTTCGCCACATC | 58.990 | 50.000 | 0.00 | 0.00 | 39.46 | 3.06 |
1597 | 1629 | 2.095415 | GGTAAAACGGCAGAATCGCTTT | 60.095 | 45.455 | 0.00 | 0.00 | 32.04 | 3.51 |
1611 | 1643 | 2.733671 | GAGGACGCGCGGGTAAAAC | 61.734 | 63.158 | 35.22 | 18.40 | 0.00 | 2.43 |
1638 | 1670 | 0.819259 | TGCACAGGAGCAACAAGTCC | 60.819 | 55.000 | 0.00 | 0.00 | 42.46 | 3.85 |
1746 | 2638 | 1.880340 | CCTCGCAATCGACAGGCTC | 60.880 | 63.158 | 0.00 | 0.00 | 40.21 | 4.70 |
1748 | 2640 | 2.892425 | CCCTCGCAATCGACAGGC | 60.892 | 66.667 | 0.00 | 0.00 | 40.21 | 4.85 |
1761 | 2653 | 3.195825 | AGTGTAACATAGCTGTGTCCCTC | 59.804 | 47.826 | 17.08 | 10.64 | 41.43 | 4.30 |
1781 | 2673 | 4.756135 | GCTATGTAACGGTCTAGCTCTAGT | 59.244 | 45.833 | 0.00 | 0.00 | 34.98 | 2.57 |
1804 | 2696 | 8.764524 | ATTTCTTGACTAAGCTACAGTAGTTG | 57.235 | 34.615 | 9.42 | 0.00 | 33.82 | 3.16 |
1877 | 2769 | 6.992123 | AGTCGAAACCAGATCATTGCATAATA | 59.008 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
1934 | 2826 | 9.612620 | GAAGATTCGACATTAAACAACTTTGAT | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1962 | 2854 | 5.163513 | CAACAACACAAAGAAAGAGCACTT | 58.836 | 37.500 | 0.00 | 0.00 | 38.05 | 3.16 |
1973 | 2865 | 4.677584 | TCGGATTTTCCAACAACACAAAG | 58.322 | 39.130 | 0.00 | 0.00 | 35.91 | 2.77 |
1990 | 2882 | 2.092914 | GGACAAACTCCAATCCTCGGAT | 60.093 | 50.000 | 0.00 | 0.00 | 39.21 | 4.18 |
1994 | 2886 | 1.003233 | ACCGGACAAACTCCAATCCTC | 59.997 | 52.381 | 9.46 | 0.00 | 39.39 | 3.71 |
2035 | 3035 | 7.436933 | AGAAAATGAGAACTTGTTGGAATTCC | 58.563 | 34.615 | 18.17 | 18.17 | 0.00 | 3.01 |
2061 | 3061 | 9.487790 | AATGAGAACTTGTTTGTCTTTCAAAAA | 57.512 | 25.926 | 0.00 | 0.00 | 45.84 | 1.94 |
2062 | 3062 | 9.487790 | AAATGAGAACTTGTTTGTCTTTCAAAA | 57.512 | 25.926 | 0.00 | 0.00 | 45.84 | 2.44 |
2063 | 3063 | 9.487790 | AAAATGAGAACTTGTTTGTCTTTCAAA | 57.512 | 25.926 | 0.00 | 0.00 | 42.79 | 2.69 |
2064 | 3064 | 9.139174 | GAAAATGAGAACTTGTTTGTCTTTCAA | 57.861 | 29.630 | 0.00 | 0.00 | 29.11 | 2.69 |
2065 | 3065 | 8.303156 | TGAAAATGAGAACTTGTTTGTCTTTCA | 58.697 | 29.630 | 0.00 | 0.00 | 33.13 | 2.69 |
2066 | 3066 | 8.687824 | TGAAAATGAGAACTTGTTTGTCTTTC | 57.312 | 30.769 | 0.00 | 0.00 | 29.22 | 2.62 |
2067 | 3067 | 9.487790 | TTTGAAAATGAGAACTTGTTTGTCTTT | 57.512 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
2068 | 3068 | 9.657419 | ATTTGAAAATGAGAACTTGTTTGTCTT | 57.343 | 25.926 | 0.00 | 0.00 | 0.00 | 3.01 |
2069 | 3069 | 9.657419 | AATTTGAAAATGAGAACTTGTTTGTCT | 57.343 | 25.926 | 0.00 | 0.00 | 0.00 | 3.41 |
2070 | 3070 | 9.906111 | GAATTTGAAAATGAGAACTTGTTTGTC | 57.094 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
2071 | 3071 | 9.434420 | TGAATTTGAAAATGAGAACTTGTTTGT | 57.566 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2072 | 3072 | 9.693157 | GTGAATTTGAAAATGAGAACTTGTTTG | 57.307 | 29.630 | 0.00 | 0.00 | 0.00 | 2.93 |
2073 | 3073 | 9.657419 | AGTGAATTTGAAAATGAGAACTTGTTT | 57.343 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2074 | 3074 | 9.657419 | AAGTGAATTTGAAAATGAGAACTTGTT | 57.343 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
2075 | 3075 | 9.305925 | GAAGTGAATTTGAAAATGAGAACTTGT | 57.694 | 29.630 | 8.90 | 0.00 | 0.00 | 3.16 |
2101 | 3101 | 6.252441 | CAGTTACTGATCTTCTGTCGCTAAAG | 59.748 | 42.308 | 6.50 | 0.00 | 32.44 | 1.85 |
2174 | 3174 | 2.685897 | GCACTTATCGGGCCATAAACAA | 59.314 | 45.455 | 4.39 | 0.00 | 0.00 | 2.83 |
2187 | 3187 | 0.950116 | GCCCATCTGCTGCACTTATC | 59.050 | 55.000 | 0.00 | 0.00 | 0.00 | 1.75 |
2306 | 3306 | 2.045536 | GCCCTGCCAGTCTTCCTG | 60.046 | 66.667 | 0.00 | 0.00 | 41.15 | 3.86 |
2344 | 3344 | 6.567050 | TGTCTAATCCAGTTGTCGTTATACC | 58.433 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
2355 | 3355 | 6.183360 | TGTGTTTGCATTTGTCTAATCCAGTT | 60.183 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
2356 | 3356 | 5.301551 | TGTGTTTGCATTTGTCTAATCCAGT | 59.698 | 36.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2357 | 3357 | 5.771469 | TGTGTTTGCATTTGTCTAATCCAG | 58.229 | 37.500 | 0.00 | 0.00 | 0.00 | 3.86 |
2359 | 3359 | 6.446318 | TCTTGTGTTTGCATTTGTCTAATCC | 58.554 | 36.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2435 | 3435 | 6.931281 | ACTCACATCAATTATGGTAAGGATCG | 59.069 | 38.462 | 0.00 | 0.00 | 40.16 | 3.69 |
2439 | 3439 | 8.511604 | AAAGACTCACATCAATTATGGTAAGG | 57.488 | 34.615 | 0.00 | 0.00 | 40.16 | 2.69 |
2472 | 3472 | 3.710209 | AGAGACAAAGTCCCCAATCAG | 57.290 | 47.619 | 0.00 | 0.00 | 32.18 | 2.90 |
2479 | 3479 | 2.561858 | AGTTCGGTAGAGACAAAGTCCC | 59.438 | 50.000 | 0.00 | 0.00 | 32.18 | 4.46 |
2517 | 3517 | 8.023706 | GGAAAATGGTCAGAATTTACTTGAGTC | 58.976 | 37.037 | 0.00 | 0.00 | 0.00 | 3.36 |
2589 | 3589 | 8.887717 | CAGGATTTTCAATTACTCTCTTACCTG | 58.112 | 37.037 | 0.00 | 0.00 | 33.24 | 4.00 |
2612 | 3612 | 1.884579 | AGTCAGCAAAACAGCATCAGG | 59.115 | 47.619 | 0.00 | 0.00 | 36.85 | 3.86 |
2634 | 3634 | 4.065789 | CCCAGACAGAAACAGAACTAACC | 58.934 | 47.826 | 0.00 | 0.00 | 0.00 | 2.85 |
2658 | 6879 | 3.685139 | TGAGACTGGCTAACCTGAAAG | 57.315 | 47.619 | 0.00 | 0.00 | 38.25 | 2.62 |
2685 | 6906 | 1.279271 | AGCTTGGTAGACGGAATTGCT | 59.721 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
2693 | 6914 | 0.388649 | ACGCTTCAGCTTGGTAGACG | 60.389 | 55.000 | 0.00 | 0.00 | 39.32 | 4.18 |
2703 | 6924 | 2.784380 | CGTACTTATCAGACGCTTCAGC | 59.216 | 50.000 | 0.00 | 0.00 | 37.78 | 4.26 |
2718 | 6939 | 8.050778 | TCCTTTTGCATTTTGATATCGTACTT | 57.949 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
2764 | 6985 | 1.372128 | GGCAAGCAAAGAACCTGCG | 60.372 | 57.895 | 0.00 | 0.00 | 44.75 | 5.18 |
2767 | 6988 | 2.044452 | GCAGGCAAGCAAAGAACCT | 58.956 | 52.632 | 0.00 | 0.00 | 0.00 | 3.50 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.