Multiple sequence alignment - TraesCS7A01G198400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G198400 chr7A 100.000 5833 0 0 1 5833 159700938 159695106 0.000000e+00 10772.0
1 TraesCS7A01G198400 chr7A 88.660 97 9 1 2100 2194 85209398 85209302 3.690000e-22 117.0
2 TraesCS7A01G198400 chr7A 86.316 95 11 1 2100 2192 434736535 434736629 1.030000e-17 102.0
3 TraesCS7A01G198400 chr7A 82.105 95 16 1 212 305 507161833 507161739 4.850000e-11 80.5
4 TraesCS7A01G198400 chr7D 94.412 3078 116 22 2169 5205 157101276 157104338 0.000000e+00 4680.0
5 TraesCS7A01G198400 chr7D 93.086 1215 73 5 614 1824 157099493 157100700 0.000000e+00 1768.0
6 TraesCS7A01G198400 chr7D 89.068 1052 89 10 390 1417 156916098 156917147 0.000000e+00 1282.0
7 TraesCS7A01G198400 chr7D 93.179 821 54 2 823 1643 158970280 158971098 0.000000e+00 1205.0
8 TraesCS7A01G198400 chr7D 90.631 523 36 3 2169 2690 158993827 158994337 0.000000e+00 682.0
9 TraesCS7A01G198400 chr7D 84.983 586 50 10 1 583 157098872 157099422 1.420000e-155 560.0
10 TraesCS7A01G198400 chr7D 93.009 329 15 3 1816 2141 158993507 158993830 1.900000e-129 473.0
11 TraesCS7A01G198400 chr7D 92.771 332 15 3 1816 2139 157100722 157101052 6.840000e-129 472.0
12 TraesCS7A01G198400 chr7D 80.556 504 75 10 6 501 158962126 158962614 3.320000e-97 366.0
13 TraesCS7A01G198400 chr7D 83.735 332 29 16 5488 5807 159006605 159006923 2.060000e-74 291.0
14 TraesCS7A01G198400 chr7D 96.296 108 4 0 1641 1748 158992696 158992803 1.670000e-40 178.0
15 TraesCS7A01G198400 chr7D 95.556 90 4 0 1735 1824 158993396 158993485 1.690000e-30 145.0
16 TraesCS7A01G198400 chr7D 87.719 114 14 0 131 244 37812093 37812206 3.670000e-27 134.0
17 TraesCS7A01G198400 chr7B 94.336 2048 83 11 3046 5071 119584755 119586791 0.000000e+00 3109.0
18 TraesCS7A01G198400 chr7B 89.028 1832 165 13 2 1819 119581892 119583701 0.000000e+00 2237.0
19 TraesCS7A01G198400 chr7B 91.842 711 48 8 2169 2874 119584050 119584755 0.000000e+00 983.0
20 TraesCS7A01G198400 chr7B 91.420 338 7 3 1811 2140 119583729 119584052 1.490000e-120 444.0
21 TraesCS7A01G198400 chr7B 81.507 438 32 24 5327 5741 119586862 119587273 1.220000e-81 315.0
22 TraesCS7A01G198400 chr5D 92.308 104 8 0 135 238 41890202 41890305 1.310000e-31 148.0
23 TraesCS7A01G198400 chr5D 77.165 254 42 9 6 244 526661013 526661265 3.670000e-27 134.0
24 TraesCS7A01G198400 chr3D 79.907 214 29 6 39 238 557929328 557929541 1.690000e-30 145.0
25 TraesCS7A01G198400 chr3D 87.000 100 9 3 2098 2194 336537983 336537885 6.180000e-20 110.0
26 TraesCS7A01G198400 chr3B 79.524 210 36 6 19 225 787825527 787825322 6.090000e-30 143.0
27 TraesCS7A01G198400 chr3B 81.522 92 14 2 12 101 12313374 12313284 8.110000e-09 73.1
28 TraesCS7A01G198400 chr2D 80.899 178 26 7 49 225 78708039 78707869 3.670000e-27 134.0
29 TraesCS7A01G198400 chr4B 76.892 251 45 9 7 244 661883253 661883503 4.740000e-26 130.0
30 TraesCS7A01G198400 chr4B 78.365 208 38 7 108 310 454012613 454012408 1.710000e-25 128.0
31 TraesCS7A01G198400 chr4B 79.365 126 24 2 1063 1187 109049280 109049156 2.900000e-13 87.9
32 TraesCS7A01G198400 chr6B 78.744 207 26 10 6 197 11328351 11328148 7.940000e-24 122.0
33 TraesCS7A01G198400 chr6B 88.000 100 10 1 2097 2194 530560363 530560462 3.690000e-22 117.0
34 TraesCS7A01G198400 chrUn 88.660 97 9 2 2100 2194 70193293 70193197 3.690000e-22 117.0
35 TraesCS7A01G198400 chr3A 88.119 101 8 3 2097 2194 453819335 453819434 3.690000e-22 117.0
36 TraesCS7A01G198400 chr4A 80.921 152 23 5 90 238 641245341 641245489 1.330000e-21 115.0
37 TraesCS7A01G198400 chr2B 86.408 103 11 3 2100 2201 622914013 622914113 6.180000e-20 110.0
38 TraesCS7A01G198400 chr2B 78.756 193 18 10 1 181 158628685 158628866 2.220000e-19 108.0
39 TraesCS7A01G198400 chr2B 74.790 238 47 10 6 237 778300318 778300088 1.730000e-15 95.3
40 TraesCS7A01G198400 chr1A 85.849 106 11 3 2100 2201 471324115 471324220 6.180000e-20 110.0
41 TraesCS7A01G198400 chr1A 82.645 121 21 0 1067 1187 463231454 463231574 2.220000e-19 108.0
42 TraesCS7A01G198400 chr4D 75.794 252 36 11 1 238 496381845 496381605 2.880000e-18 104.0
43 TraesCS7A01G198400 chr5B 75.463 216 49 3 90 302 121024387 121024173 1.030000e-17 102.0
44 TraesCS7A01G198400 chr1D 89.873 79 8 0 18 96 400008071 400008149 1.030000e-17 102.0
45 TraesCS7A01G198400 chr1D 84.112 107 12 4 2100 2202 47710703 47710808 1.340000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G198400 chr7A 159695106 159700938 5832 True 10772.0 10772 100.0000 1 5833 1 chr7A.!!$R2 5832
1 TraesCS7A01G198400 chr7D 157098872 157104338 5466 False 1870.0 4680 91.3130 1 5205 4 chr7D.!!$F6 5204
2 TraesCS7A01G198400 chr7D 156916098 156917147 1049 False 1282.0 1282 89.0680 390 1417 1 chr7D.!!$F2 1027
3 TraesCS7A01G198400 chr7D 158970280 158971098 818 False 1205.0 1205 93.1790 823 1643 1 chr7D.!!$F4 820
4 TraesCS7A01G198400 chr7D 158992696 158994337 1641 False 369.5 682 93.8730 1641 2690 4 chr7D.!!$F7 1049
5 TraesCS7A01G198400 chr7B 119581892 119587273 5381 False 1417.6 3109 89.6266 2 5741 5 chr7B.!!$F1 5739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 867 0.395312 CCCAGTTTCCACCTGTACGT 59.605 55.000 0.00 0.0 0.00 3.57 F
1313 1427 0.106015 ACCAATCCCTATGGCCTTGC 60.106 55.000 3.32 0.0 41.89 4.01 F
2384 3373 0.179092 GTAGCAAGACCGGGCGTAAT 60.179 55.000 6.32 0.0 34.54 1.89 F
2390 3379 1.153429 GACCGGGCGTAATTGAGCT 60.153 57.895 6.32 0.0 0.00 4.09 F
2790 3784 1.331214 CTTTGCCAGTCCAACATGGT 58.669 50.000 0.00 0.0 39.03 3.55 F
4303 5315 1.003116 CACAACTCTCTGTGCTGTTGC 60.003 52.381 0.00 0.0 42.22 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2745 3739 0.401356 TCAACTCAGATGGGCTTGCA 59.599 50.000 0.00 0.0 0.00 4.08 R
2766 3760 1.134340 TGTTGGACTGGCAAAGTACGT 60.134 47.619 0.00 0.0 43.57 3.57 R
3609 4606 0.523072 CAATCTGGCAAACCACCTCG 59.477 55.000 0.00 0.0 42.67 4.63 R
3916 4914 0.740149 TGCATTCCATTAAGCCTGCG 59.260 50.000 0.00 0.0 32.42 5.18 R
4509 5527 0.946221 GTCTCCTTGGTCTGTGTGCG 60.946 60.000 0.00 0.0 0.00 5.34 R
5506 6573 0.175531 GGCAATACAACACCATGGCC 59.824 55.000 13.04 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.711009 AGTGGAATGGAGTGGAGTGAAA 59.289 45.455 0.00 0.00 0.00 2.69
49 50 3.330405 TGGAATGGAGTGGAGTGAAATGA 59.670 43.478 0.00 0.00 0.00 2.57
65 66 5.300792 GTGAAATGACTAAGGTTTGGTCCAA 59.699 40.000 0.00 0.00 40.07 3.53
101 102 4.763355 AGGAATATATGTGGGGTCTGCTA 58.237 43.478 0.00 0.00 0.00 3.49
129 130 2.528743 CGACATGGCGATCACCTGC 61.529 63.158 18.41 0.00 0.00 4.85
168 170 5.573219 CCTCATATTTGGGCTGGATATGAA 58.427 41.667 13.81 4.28 40.37 2.57
181 183 0.916086 ATATGAAGGGTGCCGGTCAA 59.084 50.000 1.90 0.00 0.00 3.18
182 184 0.916086 TATGAAGGGTGCCGGTCAAT 59.084 50.000 1.90 0.00 0.00 2.57
239 241 2.033675 GGTCGAATTTTTGTGACCGGTT 59.966 45.455 9.42 0.00 41.26 4.44
250 252 4.633547 ACCGGTTAGTGGTCAGGT 57.366 55.556 0.00 0.00 33.35 4.00
256 258 2.484065 CGGTTAGTGGTCAGGTTGTTCA 60.484 50.000 0.00 0.00 0.00 3.18
273 275 0.396435 TCATCCACACGTTTGAGGCT 59.604 50.000 2.58 0.00 33.63 4.58
312 314 3.447025 GATGCTCTAAGGCGGCGGT 62.447 63.158 9.78 0.00 34.52 5.68
328 330 3.501950 GGCGGTGTTTGATCAATTTCTC 58.498 45.455 9.40 4.52 0.00 2.87
340 342 7.119709 TGATCAATTTCTCCAAATGCATCAT 57.880 32.000 0.00 0.00 31.61 2.45
342 344 6.532988 TCAATTTCTCCAAATGCATCATCA 57.467 33.333 0.00 0.00 32.18 3.07
410 413 5.758296 GTGGAGATTTTATGGACGCTTCATA 59.242 40.000 0.00 0.00 0.00 2.15
531 592 7.398332 ACTCTTATTTCAATTGGAGATGCCTTT 59.602 33.333 5.42 0.00 37.63 3.11
532 593 8.137745 TCTTATTTCAATTGGAGATGCCTTTT 57.862 30.769 5.42 0.00 37.63 2.27
533 594 8.596293 TCTTATTTCAATTGGAGATGCCTTTTT 58.404 29.630 5.42 0.00 37.63 1.94
564 625 2.358957 TCAATTGGAGATGCCTTGACG 58.641 47.619 5.42 0.00 37.63 4.35
707 810 2.756283 CCCCTCGTCTTCTCCGCT 60.756 66.667 0.00 0.00 0.00 5.52
735 838 4.148825 GATCCAGTCGCCACGGCT 62.149 66.667 6.48 0.00 44.88 5.52
760 863 1.059913 CTCTCCCAGTTTCCACCTGT 58.940 55.000 0.00 0.00 0.00 4.00
764 867 0.395312 CCCAGTTTCCACCTGTACGT 59.605 55.000 0.00 0.00 0.00 3.57
862 967 2.355513 CCACCTCATTGTCCTCCTCTTG 60.356 54.545 0.00 0.00 0.00 3.02
1313 1427 0.106015 ACCAATCCCTATGGCCTTGC 60.106 55.000 3.32 0.00 41.89 4.01
1374 1488 2.016704 GATCCGCTATGCCGTGTCG 61.017 63.158 0.00 0.00 0.00 4.35
1425 1539 1.523711 CCGCAATGTGCCCGTCTAT 60.524 57.895 0.00 0.00 41.12 1.98
1432 1546 1.485124 TGTGCCCGTCTATCTGATGT 58.515 50.000 0.00 0.00 0.00 3.06
1490 1604 1.071699 GGTGGAGCTTACAGGTGTGAA 59.928 52.381 0.00 0.00 0.00 3.18
1506 1620 6.009589 AGGTGTGAATATGTGGAAACATTCA 58.990 36.000 0.00 0.00 46.14 2.57
1558 1672 3.310227 GCATCTGAATCTGTGCTCTTCAG 59.690 47.826 8.99 8.99 44.59 3.02
1559 1673 2.969990 TCTGAATCTGTGCTCTTCAGC 58.030 47.619 9.99 0.00 43.49 4.26
1605 1719 3.182967 CCAATCAGTGAGACGTCTAAGC 58.817 50.000 20.09 11.48 0.00 3.09
1647 1761 3.543884 GAACACTGGTTCCCGCATA 57.456 52.632 0.00 0.00 46.18 3.14
1648 1762 2.038387 GAACACTGGTTCCCGCATAT 57.962 50.000 0.00 0.00 46.18 1.78
1694 1808 6.824305 ATACTTGCAACTAGCTGATGTTTT 57.176 33.333 0.00 0.00 45.94 2.43
1820 2546 6.528537 TTGTGATGAATGTTTTCCCTATGG 57.471 37.500 0.00 0.00 0.00 2.74
1827 2553 1.005450 TGTTTTCCCTATGGTGGCTCC 59.995 52.381 0.00 0.00 0.00 4.70
1966 2725 3.118956 CCAAAGTCTCCTAGTGGCTAGTG 60.119 52.174 2.96 0.00 32.62 2.74
2112 2876 3.684408 AACCTACTACTCCCTCCGATT 57.316 47.619 0.00 0.00 0.00 3.34
2125 2889 7.518188 ACTCCCTCCGATTCATATTAATTGTT 58.482 34.615 0.00 0.00 0.00 2.83
2154 3143 9.865321 TGGTTTAGTACAGCTTTAGTATAGTTG 57.135 33.333 0.00 3.49 0.00 3.16
2155 3144 9.866798 GGTTTAGTACAGCTTTAGTATAGTTGT 57.133 33.333 13.09 13.09 39.79 3.32
2163 3152 8.996271 ACAGCTTTAGTATAGTTGTACAAAACC 58.004 33.333 10.51 0.00 35.65 3.27
2164 3153 8.995220 CAGCTTTAGTATAGTTGTACAAAACCA 58.005 33.333 10.51 0.00 0.00 3.67
2165 3154 9.216117 AGCTTTAGTATAGTTGTACAAAACCAG 57.784 33.333 10.51 4.84 0.00 4.00
2166 3155 7.961283 GCTTTAGTATAGTTGTACAAAACCAGC 59.039 37.037 10.51 9.94 0.00 4.85
2167 3156 7.585286 TTAGTATAGTTGTACAAAACCAGCG 57.415 36.000 10.51 0.00 0.00 5.18
2255 3244 0.815734 ATCACTTGCCTGCATGCTTC 59.184 50.000 20.33 8.27 0.00 3.86
2279 3268 5.416083 CCATTCAACTAGATCGGTGTGTTA 58.584 41.667 0.00 0.00 0.00 2.41
2287 3276 1.659098 GATCGGTGTGTTAGCTTTCCG 59.341 52.381 0.00 0.00 39.40 4.30
2357 3346 1.900245 TGACATGTGCTTGCACAGAT 58.100 45.000 28.24 20.24 38.59 2.90
2360 3349 4.011698 TGACATGTGCTTGCACAGATTAT 58.988 39.130 28.24 12.61 38.59 1.28
2380 3369 2.173669 CATGTAGCAAGACCGGGCG 61.174 63.158 6.32 0.00 34.54 6.13
2381 3370 2.656069 ATGTAGCAAGACCGGGCGT 61.656 57.895 6.32 0.00 34.54 5.68
2384 3373 0.179092 GTAGCAAGACCGGGCGTAAT 60.179 55.000 6.32 0.00 34.54 1.89
2390 3379 1.153429 GACCGGGCGTAATTGAGCT 60.153 57.895 6.32 0.00 0.00 4.09
2397 3386 3.244579 CGGGCGTAATTGAGCTACTAAAC 59.755 47.826 6.87 0.00 0.00 2.01
2402 3391 6.176453 GCGTAATTGAGCTACTAAACGAAAG 58.824 40.000 12.82 0.00 0.00 2.62
2448 3439 4.931601 GCACATCTTGAGTGATCTGTTACA 59.068 41.667 0.00 0.00 39.30 2.41
2564 3558 8.241497 TGGAACACGTAGTTATTATATCCAGT 57.759 34.615 3.83 0.00 41.61 4.00
2745 3739 5.010012 CACTTCTGAAGTAAGCCATTTTGGT 59.990 40.000 21.65 0.00 40.46 3.67
2756 3750 1.676615 CCATTTTGGTGCAAGCCCATC 60.677 52.381 0.00 0.00 31.35 3.51
2766 3760 2.239402 TGCAAGCCCATCTGAGTTGATA 59.761 45.455 0.00 0.00 0.00 2.15
2769 3763 2.111384 AGCCCATCTGAGTTGATACGT 58.889 47.619 0.00 0.00 0.00 3.57
2790 3784 1.331214 CTTTGCCAGTCCAACATGGT 58.669 50.000 0.00 0.00 39.03 3.55
2839 3833 6.154021 GGAATAGGGTGTTACTGTCTTACTGA 59.846 42.308 0.00 0.00 0.00 3.41
2840 3834 4.868314 AGGGTGTTACTGTCTTACTGAC 57.132 45.455 0.00 0.00 45.54 3.51
2921 3917 5.525199 ACCAAATCGATAAACAAAAAGCGT 58.475 33.333 0.00 0.00 0.00 5.07
2930 3926 2.568623 ACAAAAAGCGTCAGAGGGAT 57.431 45.000 0.00 0.00 0.00 3.85
2996 3992 9.762933 AAATTTTACTCACTTTGCACACAATAT 57.237 25.926 0.00 0.00 35.21 1.28
3376 4373 6.257849 CACTAGTTAACTTTCTTCAGTGCACA 59.742 38.462 21.04 0.00 0.00 4.57
3468 4465 5.147330 TGTCTTGTTGGAGGTACTATGTG 57.853 43.478 0.00 0.00 41.55 3.21
3512 4509 8.561738 AAAATATTTTGTTAGCTTCCGAGAGA 57.438 30.769 12.62 0.00 0.00 3.10
3531 4528 7.748683 CCGAGAGAGAATTCTATGATAGAAACG 59.251 40.741 17.86 12.38 46.81 3.60
3585 4582 6.070251 TGGTATTGAAGCATCTCAAGGAAGTA 60.070 38.462 2.90 0.00 38.66 2.24
3619 4616 3.581332 TCATAAGGAAGACGAGGTGGTTT 59.419 43.478 0.00 0.00 0.00 3.27
3688 4685 8.187913 TCAAATTGACATCCAAGTTATCCAAA 57.812 30.769 0.00 0.00 40.61 3.28
4029 5027 4.441913 GCAAATGCCTAAATAGCACCATGT 60.442 41.667 0.00 0.00 44.40 3.21
4232 5231 1.742761 AAGCTGGTCCATCAATGTCG 58.257 50.000 0.00 0.00 0.00 4.35
4254 5253 6.017026 GTCGTAGGAATGACTGTAGATCATGA 60.017 42.308 0.00 0.00 38.41 3.07
4303 5315 1.003116 CACAACTCTCTGTGCTGTTGC 60.003 52.381 0.00 0.00 42.22 4.17
4385 5397 1.483827 ACTAGCAGCTTAGCATGAGCA 59.516 47.619 7.07 0.00 45.49 4.26
4473 5491 1.323534 CGAAATTCTCAGCCGGTTACG 59.676 52.381 1.90 0.00 40.55 3.18
4509 5527 3.754850 GTCCCATTACCACAACTAACCAC 59.245 47.826 0.00 0.00 0.00 4.16
4786 5811 5.771469 TCCAATGCTTATTGTGTTCTGTTG 58.229 37.500 0.00 0.00 0.00 3.33
4794 5819 6.197096 GCTTATTGTGTTCTGTTGTGTTTCTG 59.803 38.462 0.00 0.00 0.00 3.02
4803 5828 2.822561 TGTTGTGTTTCTGCAGGTTTCA 59.177 40.909 15.13 5.83 0.00 2.69
4804 5829 3.119531 TGTTGTGTTTCTGCAGGTTTCAG 60.120 43.478 15.13 0.00 0.00 3.02
4805 5830 1.405105 TGTGTTTCTGCAGGTTTCAGC 59.595 47.619 15.13 0.00 0.00 4.26
4837 5866 5.012251 AGACTGAGATCCTGGATTGATGATG 59.988 44.000 11.17 1.28 0.00 3.07
4845 5874 4.661709 TCCTGGATTGATGATGGATCTTCA 59.338 41.667 0.00 1.99 38.65 3.02
5026 6061 3.119316 TCAAGTTCGTTTGCATTTGGTGT 60.119 39.130 0.00 0.00 0.00 4.16
5077 6112 2.307496 AACATGGTTGATGGGCTTCA 57.693 45.000 0.00 0.00 36.23 3.02
5139 6174 3.068590 ACTTTCCGAACGGTCTGAGTTTA 59.931 43.478 12.93 0.00 36.47 2.01
5140 6175 3.947910 TTCCGAACGGTCTGAGTTTAT 57.052 42.857 12.93 0.00 36.47 1.40
5141 6176 3.226346 TCCGAACGGTCTGAGTTTATG 57.774 47.619 12.93 0.00 36.47 1.90
5142 6177 2.559668 TCCGAACGGTCTGAGTTTATGT 59.440 45.455 12.93 0.00 36.47 2.29
5143 6178 2.921754 CCGAACGGTCTGAGTTTATGTC 59.078 50.000 0.00 0.00 31.14 3.06
5144 6179 3.571571 CGAACGGTCTGAGTTTATGTCA 58.428 45.455 0.00 0.00 31.14 3.58
5145 6180 3.364023 CGAACGGTCTGAGTTTATGTCAC 59.636 47.826 0.00 0.00 31.14 3.67
5153 6190 4.515191 TCTGAGTTTATGTCACCAACTTGC 59.485 41.667 1.01 0.00 30.71 4.01
5156 6193 6.058833 TGAGTTTATGTCACCAACTTGCTTA 58.941 36.000 1.01 0.00 30.71 3.09
5159 6196 8.630054 AGTTTATGTCACCAACTTGCTTATTA 57.370 30.769 0.00 0.00 0.00 0.98
5165 6202 5.355350 GTCACCAACTTGCTTATTATCAGCT 59.645 40.000 0.00 0.00 38.19 4.24
5169 6206 3.134458 ACTTGCTTATTATCAGCTCCGC 58.866 45.455 0.00 0.00 38.19 5.54
5173 6210 3.070159 TGCTTATTATCAGCTCCGCTTCT 59.930 43.478 0.00 0.00 36.40 2.85
5181 6218 1.153667 GCTCCGCTTCTCCTGTCTG 60.154 63.158 0.00 0.00 0.00 3.51
5182 6219 1.882989 GCTCCGCTTCTCCTGTCTGT 61.883 60.000 0.00 0.00 0.00 3.41
5225 6262 8.779354 AGATTAGATAGATTTATTCGGTTGGC 57.221 34.615 0.00 0.00 0.00 4.52
5226 6263 8.598041 AGATTAGATAGATTTATTCGGTTGGCT 58.402 33.333 0.00 0.00 0.00 4.75
5227 6264 7.962964 TTAGATAGATTTATTCGGTTGGCTG 57.037 36.000 0.00 0.00 0.00 4.85
5228 6265 5.930135 AGATAGATTTATTCGGTTGGCTGT 58.070 37.500 0.00 0.00 0.00 4.40
5229 6266 5.760253 AGATAGATTTATTCGGTTGGCTGTG 59.240 40.000 0.00 0.00 0.00 3.66
5230 6267 3.950397 AGATTTATTCGGTTGGCTGTGA 58.050 40.909 0.00 0.00 0.00 3.58
5231 6268 4.526970 AGATTTATTCGGTTGGCTGTGAT 58.473 39.130 0.00 0.00 0.00 3.06
5232 6269 4.336433 AGATTTATTCGGTTGGCTGTGATG 59.664 41.667 0.00 0.00 0.00 3.07
5233 6270 2.779755 TATTCGGTTGGCTGTGATGT 57.220 45.000 0.00 0.00 0.00 3.06
5234 6271 1.167851 ATTCGGTTGGCTGTGATGTG 58.832 50.000 0.00 0.00 0.00 3.21
5235 6272 0.179032 TTCGGTTGGCTGTGATGTGT 60.179 50.000 0.00 0.00 0.00 3.72
5236 6273 0.884259 TCGGTTGGCTGTGATGTGTG 60.884 55.000 0.00 0.00 0.00 3.82
5237 6274 1.286880 GGTTGGCTGTGATGTGTGC 59.713 57.895 0.00 0.00 0.00 4.57
5238 6275 1.454572 GGTTGGCTGTGATGTGTGCA 61.455 55.000 0.00 0.00 0.00 4.57
5239 6276 0.318107 GTTGGCTGTGATGTGTGCAC 60.318 55.000 10.75 10.75 36.81 4.57
5240 6277 0.750911 TTGGCTGTGATGTGTGCACA 60.751 50.000 17.42 17.42 46.44 4.57
5250 6287 2.200792 TGTGTGCACATTTTGGTTCG 57.799 45.000 24.69 0.00 36.21 3.95
5251 6288 1.745653 TGTGTGCACATTTTGGTTCGA 59.254 42.857 24.69 0.00 36.21 3.71
5252 6289 2.164422 TGTGTGCACATTTTGGTTCGAA 59.836 40.909 24.69 0.00 36.21 3.71
5253 6290 3.182967 GTGTGCACATTTTGGTTCGAAA 58.817 40.909 24.69 0.00 0.00 3.46
5254 6291 3.801594 GTGTGCACATTTTGGTTCGAAAT 59.198 39.130 24.69 0.00 0.00 2.17
5255 6292 4.269844 GTGTGCACATTTTGGTTCGAAATT 59.730 37.500 24.69 0.00 0.00 1.82
5256 6293 4.269603 TGTGCACATTTTGGTTCGAAATTG 59.730 37.500 17.42 0.00 0.00 2.32
5257 6294 3.247173 TGCACATTTTGGTTCGAAATTGC 59.753 39.130 0.00 3.69 35.04 3.56
5258 6295 3.494251 GCACATTTTGGTTCGAAATTGCT 59.506 39.130 0.00 0.00 33.63 3.91
5259 6296 4.024977 GCACATTTTGGTTCGAAATTGCTT 60.025 37.500 0.00 0.00 33.63 3.91
5260 6297 5.503846 GCACATTTTGGTTCGAAATTGCTTT 60.504 36.000 0.00 0.00 33.63 3.51
5261 6298 5.902981 CACATTTTGGTTCGAAATTGCTTTG 59.097 36.000 0.00 0.00 0.00 2.77
5262 6299 5.007528 ACATTTTGGTTCGAAATTGCTTTGG 59.992 36.000 0.00 0.00 0.00 3.28
5263 6300 4.392921 TTTGGTTCGAAATTGCTTTGGA 57.607 36.364 0.00 0.00 0.00 3.53
5264 6301 3.363341 TGGTTCGAAATTGCTTTGGAC 57.637 42.857 0.00 0.00 30.03 4.02
5265 6302 2.035321 TGGTTCGAAATTGCTTTGGACC 59.965 45.455 0.00 0.00 30.03 4.46
5266 6303 2.315901 GTTCGAAATTGCTTTGGACCG 58.684 47.619 0.00 0.00 30.03 4.79
5267 6304 1.885560 TCGAAATTGCTTTGGACCGA 58.114 45.000 0.00 0.00 0.00 4.69
5268 6305 2.432444 TCGAAATTGCTTTGGACCGAT 58.568 42.857 0.00 0.00 0.00 4.18
5269 6306 2.418628 TCGAAATTGCTTTGGACCGATC 59.581 45.455 0.00 0.00 0.00 3.69
5270 6307 2.420022 CGAAATTGCTTTGGACCGATCT 59.580 45.455 0.00 0.00 0.00 2.75
5271 6308 3.728864 CGAAATTGCTTTGGACCGATCTG 60.729 47.826 0.00 0.00 0.00 2.90
5287 6324 3.490419 CGATCTGATGTGCTGATCTGACA 60.490 47.826 3.42 5.71 44.96 3.58
5289 6326 3.858247 TCTGATGTGCTGATCTGACAAG 58.142 45.455 3.42 1.96 0.00 3.16
5291 6328 1.669779 GATGTGCTGATCTGACAAGGC 59.330 52.381 3.42 0.00 0.00 4.35
5296 6333 2.892425 GATCTGACAAGGCCGCGG 60.892 66.667 24.05 24.05 0.00 6.46
5334 6387 0.318784 GTGCGCTATTCTACCCTCGG 60.319 60.000 9.73 0.00 0.00 4.63
5357 6410 4.133078 GGTTCCAAATCTGCATCTAGAGG 58.867 47.826 0.00 0.00 0.00 3.69
5364 6417 0.457443 CTGCATCTAGAGGTGTCGCA 59.543 55.000 6.23 3.40 0.00 5.10
5383 6440 2.287608 GCAGTTTCTTGAAAAGGGGTCG 60.288 50.000 0.00 0.00 46.24 4.79
5399 6462 5.278061 AGGGGTCGTATATATATGCCAACT 58.722 41.667 18.90 15.07 0.00 3.16
5412 6475 1.161843 GCCAACTAAAGTAAGGCGCA 58.838 50.000 10.83 0.00 38.80 6.09
5413 6476 1.130561 GCCAACTAAAGTAAGGCGCAG 59.869 52.381 10.83 0.00 38.80 5.18
5414 6477 1.737793 CCAACTAAAGTAAGGCGCAGG 59.262 52.381 10.83 0.00 0.00 4.85
5428 6495 3.528009 GCGCAGGCTAATAAGTTCATC 57.472 47.619 0.30 0.00 35.83 2.92
5436 6503 5.104360 AGGCTAATAAGTTCATCCAGCAGAA 60.104 40.000 0.00 0.00 0.00 3.02
5448 6515 4.104383 TCCAGCAGAAAGTTTGAATCCT 57.896 40.909 0.00 0.00 0.00 3.24
5449 6516 4.074970 TCCAGCAGAAAGTTTGAATCCTC 58.925 43.478 0.00 0.00 0.00 3.71
5477 6544 9.117183 TCAAATCTTGAAACTATCATCATCAGG 57.883 33.333 0.00 0.00 38.03 3.86
5478 6545 8.900781 CAAATCTTGAAACTATCATCATCAGGT 58.099 33.333 0.00 0.00 38.03 4.00
5480 6547 9.553064 AATCTTGAAACTATCATCATCAGGTAC 57.447 33.333 0.00 0.00 38.03 3.34
5481 6548 8.311395 TCTTGAAACTATCATCATCAGGTACT 57.689 34.615 0.00 0.00 38.03 2.73
5482 6549 9.421399 TCTTGAAACTATCATCATCAGGTACTA 57.579 33.333 0.00 0.00 38.03 1.82
5483 6550 9.469807 CTTGAAACTATCATCATCAGGTACTAC 57.530 37.037 0.00 0.00 38.03 2.73
5491 6558 7.239763 TCATCATCAGGTACTACAAAAGACA 57.760 36.000 0.00 0.00 36.02 3.41
5492 6559 7.097192 TCATCATCAGGTACTACAAAAGACAC 58.903 38.462 0.00 0.00 36.02 3.67
5493 6560 5.790593 TCATCAGGTACTACAAAAGACACC 58.209 41.667 0.00 0.00 36.02 4.16
5585 6658 3.261981 ACATCACAGTATTCCGTTCCC 57.738 47.619 0.00 0.00 0.00 3.97
5620 6693 2.970639 GTGGCTGCCGTCACTCTA 59.029 61.111 14.98 0.00 42.42 2.43
5629 6705 1.982395 CGTCACTCTACCCCCAGCA 60.982 63.158 0.00 0.00 0.00 4.41
5630 6706 1.597461 GTCACTCTACCCCCAGCAC 59.403 63.158 0.00 0.00 0.00 4.40
5650 6726 2.965147 GCCACAAATCGCACGAGCA 61.965 57.895 5.50 0.00 42.27 4.26
5651 6727 1.133253 CCACAAATCGCACGAGCAG 59.867 57.895 5.50 0.00 42.27 4.24
5652 6728 1.133253 CACAAATCGCACGAGCAGG 59.867 57.895 5.50 0.00 42.27 4.85
5653 6729 1.005037 ACAAATCGCACGAGCAGGA 60.005 52.632 5.50 0.00 42.27 3.86
5654 6730 1.016130 ACAAATCGCACGAGCAGGAG 61.016 55.000 5.50 0.00 42.27 3.69
5655 6731 2.103042 AAATCGCACGAGCAGGAGC 61.103 57.895 5.50 0.00 42.27 4.70
5656 6732 2.786539 AAATCGCACGAGCAGGAGCA 62.787 55.000 5.50 0.00 45.49 4.26
5657 6733 3.713205 ATCGCACGAGCAGGAGCAG 62.713 63.158 5.50 0.00 45.49 4.24
5680 6756 3.606687 GGGTAACATGGGTGAACAGTAG 58.393 50.000 0.00 0.00 39.74 2.57
5702 6778 0.908198 GTTGGCAGAGGGATCAGACT 59.092 55.000 0.00 0.00 0.00 3.24
5751 6827 2.125832 CCGTGGCGTTGGACGTAT 60.126 61.111 2.27 0.00 44.73 3.06
5752 6828 2.449525 CCGTGGCGTTGGACGTATG 61.450 63.158 2.27 0.00 44.73 2.39
5753 6829 2.782615 GTGGCGTTGGACGTATGC 59.217 61.111 2.27 0.00 44.73 3.14
5754 6830 2.811747 TGGCGTTGGACGTATGCG 60.812 61.111 0.19 0.19 44.73 4.73
5764 6840 4.546637 CGTATGCGTCCGTATCCC 57.453 61.111 0.00 0.00 0.00 3.85
5765 6841 1.441515 CGTATGCGTCCGTATCCCG 60.442 63.158 0.00 0.00 0.00 5.14
5795 6871 4.332637 CGTGACCGTCGTCCCGTT 62.333 66.667 0.00 0.00 35.46 4.44
5796 6872 2.732094 GTGACCGTCGTCCCGTTG 60.732 66.667 0.00 0.00 38.32 4.10
5797 6873 4.651008 TGACCGTCGTCCCGTTGC 62.651 66.667 0.00 0.00 38.32 4.17
5798 6874 4.651008 GACCGTCGTCCCGTTGCA 62.651 66.667 0.00 0.00 32.40 4.08
5799 6875 4.657824 ACCGTCGTCCCGTTGCAG 62.658 66.667 0.00 0.00 0.00 4.41
5824 6900 4.480031 GGTCGAGAGCGGAAGAAC 57.520 61.111 0.00 0.00 38.28 3.01
5825 6901 1.514443 GGTCGAGAGCGGAAGAACG 60.514 63.158 0.00 0.00 38.28 3.95
5826 6902 1.514443 GTCGAGAGCGGAAGAACGG 60.514 63.158 0.00 0.00 38.28 4.44
5827 6903 2.202623 CGAGAGCGGAAGAACGGG 60.203 66.667 0.00 0.00 0.00 5.28
5828 6904 2.184579 GAGAGCGGAAGAACGGGG 59.815 66.667 0.00 0.00 0.00 5.73
5829 6905 2.283676 AGAGCGGAAGAACGGGGA 60.284 61.111 0.00 0.00 0.00 4.81
5830 6906 1.885163 GAGAGCGGAAGAACGGGGAA 61.885 60.000 0.00 0.00 0.00 3.97
5831 6907 1.004200 GAGCGGAAGAACGGGGAAA 60.004 57.895 0.00 0.00 0.00 3.13
5832 6908 0.604511 GAGCGGAAGAACGGGGAAAA 60.605 55.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.852075 TCCGCCACCCAAACTCCT 60.852 61.111 0.00 0.00 0.00 3.69
46 47 3.071892 TCGTTGGACCAAACCTTAGTCAT 59.928 43.478 8.94 0.00 31.99 3.06
49 50 2.809299 GCTCGTTGGACCAAACCTTAGT 60.809 50.000 8.94 0.00 0.00 2.24
65 66 0.757188 ATTCCTCCTCATCCGCTCGT 60.757 55.000 0.00 0.00 0.00 4.18
181 183 1.278127 ACGAACCTCAAATGTCCGGAT 59.722 47.619 7.81 0.00 0.00 4.18
182 184 0.682852 ACGAACCTCAAATGTCCGGA 59.317 50.000 0.00 0.00 0.00 5.14
186 188 4.473199 GCCTTAAACGAACCTCAAATGTC 58.527 43.478 0.00 0.00 0.00 3.06
239 241 2.976185 TGGATGAACAACCTGACCACTA 59.024 45.455 3.06 0.00 0.00 2.74
247 249 2.341846 AACGTGTGGATGAACAACCT 57.658 45.000 0.00 0.00 0.00 3.50
250 252 2.616376 CCTCAAACGTGTGGATGAACAA 59.384 45.455 5.75 0.00 40.28 2.83
256 258 0.108585 ACAGCCTCAAACGTGTGGAT 59.891 50.000 5.75 0.00 40.28 3.41
312 314 6.522946 TGCATTTGGAGAAATTGATCAAACA 58.477 32.000 13.09 2.61 31.42 2.83
328 330 3.243267 TGCGAATCTGATGATGCATTTGG 60.243 43.478 0.00 0.00 30.04 3.28
340 342 9.371136 GTATGAATTCCTATATTGCGAATCTGA 57.629 33.333 2.27 0.00 0.00 3.27
342 344 9.896645 ATGTATGAATTCCTATATTGCGAATCT 57.103 29.630 2.27 0.00 0.00 2.40
508 540 8.782339 AAAAAGGCATCTCCAATTGAAATAAG 57.218 30.769 7.12 0.00 37.29 1.73
532 593 8.203485 GGCATCTCCAATTGATATTACCAAAAA 58.797 33.333 7.12 0.00 34.01 1.94
533 594 7.564660 AGGCATCTCCAATTGATATTACCAAAA 59.435 33.333 7.12 0.00 37.29 2.44
534 595 7.068702 AGGCATCTCCAATTGATATTACCAAA 58.931 34.615 7.12 0.00 37.29 3.28
535 596 6.613699 AGGCATCTCCAATTGATATTACCAA 58.386 36.000 7.12 0.00 37.29 3.67
536 597 6.204852 AGGCATCTCCAATTGATATTACCA 57.795 37.500 7.12 0.00 37.29 3.25
537 598 6.716628 TCAAGGCATCTCCAATTGATATTACC 59.283 38.462 7.12 1.79 37.29 2.85
538 599 7.571983 CGTCAAGGCATCTCCAATTGATATTAC 60.572 40.741 7.12 0.00 33.34 1.89
539 600 6.427853 CGTCAAGGCATCTCCAATTGATATTA 59.572 38.462 7.12 0.00 33.34 0.98
541 602 4.758674 CGTCAAGGCATCTCCAATTGATAT 59.241 41.667 7.12 0.00 33.34 1.63
542 603 4.129380 CGTCAAGGCATCTCCAATTGATA 58.871 43.478 7.12 0.00 33.34 2.15
543 604 2.947652 CGTCAAGGCATCTCCAATTGAT 59.052 45.455 7.12 0.00 33.34 2.57
544 605 2.027285 TCGTCAAGGCATCTCCAATTGA 60.027 45.455 7.12 0.00 37.29 2.57
545 606 2.353889 CTCGTCAAGGCATCTCCAATTG 59.646 50.000 0.00 0.00 37.29 2.32
546 607 2.636830 CTCGTCAAGGCATCTCCAATT 58.363 47.619 0.00 0.00 37.29 2.32
547 608 1.745141 GCTCGTCAAGGCATCTCCAAT 60.745 52.381 0.00 0.00 37.29 3.16
548 609 0.391661 GCTCGTCAAGGCATCTCCAA 60.392 55.000 0.00 0.00 37.29 3.53
549 610 1.219124 GCTCGTCAAGGCATCTCCA 59.781 57.895 0.00 0.00 37.29 3.86
550 611 4.116878 GCTCGTCAAGGCATCTCC 57.883 61.111 0.00 0.00 0.00 3.71
704 807 4.301027 GATCGGGGTAGGCCAGCG 62.301 72.222 5.01 0.00 36.17 5.18
707 810 2.445845 CTGGATCGGGGTAGGCCA 60.446 66.667 5.01 0.00 36.17 5.36
735 838 1.262640 GGAAACTGGGAGAGGCGGTA 61.263 60.000 0.00 0.00 0.00 4.02
760 863 0.742505 CGCCTACAGGGAATGACGTA 59.257 55.000 0.00 0.00 37.23 3.57
764 867 2.908015 GGCGCCTACAGGGAATGA 59.092 61.111 22.15 0.00 37.23 2.57
955 1060 0.031585 GTTCCACCGGGCAAGAAAAC 59.968 55.000 6.32 0.00 0.00 2.43
1313 1427 7.605691 GGAATATCTCACTGTATTCCTCATTGG 59.394 40.741 14.02 0.00 46.66 3.16
1374 1488 2.039405 CACCTGAGCTTGGCAGAGC 61.039 63.158 11.97 11.97 43.02 4.09
1425 1539 2.076100 GTCGAATTGCCACACATCAGA 58.924 47.619 0.00 0.00 0.00 3.27
1432 1546 2.289631 ACATGAGAGTCGAATTGCCACA 60.290 45.455 0.00 0.00 0.00 4.17
1490 1604 8.543774 AGAAGTCTAGTGAATGTTTCCACATAT 58.456 33.333 0.00 0.00 43.34 1.78
1506 1620 1.552792 GGGCAGCTTGAGAAGTCTAGT 59.447 52.381 0.00 0.00 0.00 2.57
1558 1672 2.967887 AGATCTTGGGGCCATAAATTGC 59.032 45.455 4.39 0.00 0.00 3.56
1559 1673 4.217510 TGAGATCTTGGGGCCATAAATTG 58.782 43.478 4.39 0.00 0.00 2.32
1605 1719 7.810759 TTCACATTGAATTCACATTGAGTGATG 59.189 33.333 7.89 8.37 43.08 3.07
1647 1761 3.956199 CAAGACATGGGGCAGAAATACAT 59.044 43.478 0.00 0.00 0.00 2.29
1648 1762 3.245229 ACAAGACATGGGGCAGAAATACA 60.245 43.478 0.00 0.00 0.00 2.29
1694 1808 1.130054 AAGCAGAGGAGCAGTCCCAA 61.130 55.000 0.00 0.00 45.26 4.12
1820 2546 4.873827 TGTCACGATAATTAAAGGAGCCAC 59.126 41.667 0.00 0.00 0.00 5.01
1827 2553 7.688372 AGTCATTGCTGTCACGATAATTAAAG 58.312 34.615 0.00 0.00 0.00 1.85
1966 2725 7.010183 ACACATGTATAGTACATCGAAAGCAAC 59.990 37.037 0.00 0.00 45.83 4.17
2014 2778 9.567776 TGTAAGGAGATTTTGAAAATGTGAGTA 57.432 29.630 8.03 0.00 0.00 2.59
2137 3126 8.996271 GGTTTTGTACAACTATACTAAAGCTGT 58.004 33.333 8.07 0.00 41.18 4.40
2138 3127 8.995220 TGGTTTTGTACAACTATACTAAAGCTG 58.005 33.333 8.07 0.00 42.98 4.24
2139 3128 9.216117 CTGGTTTTGTACAACTATACTAAAGCT 57.784 33.333 8.07 0.00 42.98 3.74
2140 3129 7.961283 GCTGGTTTTGTACAACTATACTAAAGC 59.039 37.037 8.07 7.62 42.92 3.51
2141 3130 8.166706 CGCTGGTTTTGTACAACTATACTAAAG 58.833 37.037 8.07 5.67 32.77 1.85
2142 3131 7.871973 TCGCTGGTTTTGTACAACTATACTAAA 59.128 33.333 8.07 0.00 30.62 1.85
2143 3132 7.329226 GTCGCTGGTTTTGTACAACTATACTAA 59.671 37.037 8.07 0.00 0.00 2.24
2144 3133 6.808212 GTCGCTGGTTTTGTACAACTATACTA 59.192 38.462 8.07 2.05 0.00 1.82
2145 3134 5.636543 GTCGCTGGTTTTGTACAACTATACT 59.363 40.000 8.07 0.00 0.00 2.12
2146 3135 5.406175 TGTCGCTGGTTTTGTACAACTATAC 59.594 40.000 8.07 4.49 0.00 1.47
2147 3136 5.539979 TGTCGCTGGTTTTGTACAACTATA 58.460 37.500 8.07 0.00 0.00 1.31
2148 3137 4.382291 TGTCGCTGGTTTTGTACAACTAT 58.618 39.130 8.07 0.00 0.00 2.12
2149 3138 3.794717 TGTCGCTGGTTTTGTACAACTA 58.205 40.909 8.07 0.00 0.00 2.24
2150 3139 2.634600 TGTCGCTGGTTTTGTACAACT 58.365 42.857 8.07 0.00 0.00 3.16
2151 3140 3.408288 TTGTCGCTGGTTTTGTACAAC 57.592 42.857 8.07 0.00 0.00 3.32
2152 3141 4.640789 AATTGTCGCTGGTTTTGTACAA 57.359 36.364 3.59 3.59 0.00 2.41
2153 3142 5.752892 TTAATTGTCGCTGGTTTTGTACA 57.247 34.783 0.00 0.00 0.00 2.90
2154 3143 7.431084 CCATATTAATTGTCGCTGGTTTTGTAC 59.569 37.037 0.00 0.00 0.00 2.90
2155 3144 7.337184 TCCATATTAATTGTCGCTGGTTTTGTA 59.663 33.333 0.00 0.00 0.00 2.41
2156 3145 6.151985 TCCATATTAATTGTCGCTGGTTTTGT 59.848 34.615 0.00 0.00 0.00 2.83
2157 3146 6.559810 TCCATATTAATTGTCGCTGGTTTTG 58.440 36.000 0.00 0.00 0.00 2.44
2158 3147 6.767524 TCCATATTAATTGTCGCTGGTTTT 57.232 33.333 0.00 0.00 0.00 2.43
2159 3148 6.293407 CGATCCATATTAATTGTCGCTGGTTT 60.293 38.462 0.00 0.00 0.00 3.27
2160 3149 5.179368 CGATCCATATTAATTGTCGCTGGTT 59.821 40.000 0.00 0.00 0.00 3.67
2161 3150 4.690748 CGATCCATATTAATTGTCGCTGGT 59.309 41.667 0.00 0.00 0.00 4.00
2162 3151 4.093408 CCGATCCATATTAATTGTCGCTGG 59.907 45.833 0.00 0.00 0.00 4.85
2163 3152 4.929211 TCCGATCCATATTAATTGTCGCTG 59.071 41.667 0.00 0.00 0.00 5.18
2164 3153 5.147330 TCCGATCCATATTAATTGTCGCT 57.853 39.130 0.00 0.00 0.00 4.93
2165 3154 4.330074 CCTCCGATCCATATTAATTGTCGC 59.670 45.833 0.00 0.00 0.00 5.19
2166 3155 4.870426 CCCTCCGATCCATATTAATTGTCG 59.130 45.833 0.00 0.00 0.00 4.35
2167 3156 6.049955 TCCCTCCGATCCATATTAATTGTC 57.950 41.667 0.00 0.00 0.00 3.18
2223 3212 5.357314 CAGGCAAGTGATGAATCTGAAGAAT 59.643 40.000 0.00 0.00 0.00 2.40
2226 3215 3.181499 GCAGGCAAGTGATGAATCTGAAG 60.181 47.826 0.00 0.00 0.00 3.02
2255 3244 3.198068 CACACCGATCTAGTTGAATGGG 58.802 50.000 0.00 0.00 0.00 4.00
2279 3268 5.360591 CAGTTCCATATCTAACGGAAAGCT 58.639 41.667 0.00 0.00 40.40 3.74
2287 3276 8.153550 ACTTGATCATCCAGTTCCATATCTAAC 58.846 37.037 0.00 0.00 0.00 2.34
2318 3307 4.949856 GTCAATTGATTACACCACATCCCT 59.050 41.667 12.12 0.00 0.00 4.20
2370 3359 0.743345 GCTCAATTACGCCCGGTCTT 60.743 55.000 0.00 0.00 0.00 3.01
2376 3365 3.244579 CGTTTAGTAGCTCAATTACGCCC 59.755 47.826 0.00 0.00 0.00 6.13
2384 3373 7.541091 CACTGATACTTTCGTTTAGTAGCTCAA 59.459 37.037 0.00 0.00 35.93 3.02
2390 3379 8.301720 ACATCACACTGATACTTTCGTTTAGTA 58.698 33.333 0.00 0.00 34.28 1.82
2397 3386 7.525688 ACAATACATCACACTGATACTTTCG 57.474 36.000 0.00 0.00 34.28 3.46
2402 3391 6.756542 TGCACTACAATACATCACACTGATAC 59.243 38.462 0.00 0.00 34.28 2.24
2448 3439 2.334977 TCACTGTACCAGGAACCACAT 58.665 47.619 0.00 0.00 35.51 3.21
2478 3470 7.463469 TGTACTGCAATTACAATACAGATCG 57.537 36.000 5.54 0.00 32.67 3.69
2547 3541 9.872721 GGGCTTCTTACTGGATATAATAACTAC 57.127 37.037 0.00 0.00 0.00 2.73
2564 3558 4.411212 GGAGTTATGGGTAAGGGCTTCTTA 59.589 45.833 0.00 0.00 36.93 2.10
2584 3578 7.496920 TCTCAATCAATAGTAACATGCTTGGAG 59.503 37.037 4.44 0.00 0.00 3.86
2737 3731 1.276989 AGATGGGCTTGCACCAAAATG 59.723 47.619 0.00 0.00 42.17 2.32
2745 3739 0.401356 TCAACTCAGATGGGCTTGCA 59.599 50.000 0.00 0.00 0.00 4.08
2756 3750 4.242475 TGGCAAAGTACGTATCAACTCAG 58.758 43.478 0.00 0.00 0.00 3.35
2766 3760 1.134340 TGTTGGACTGGCAAAGTACGT 60.134 47.619 0.00 0.00 43.57 3.57
2769 3763 2.158534 ACCATGTTGGACTGGCAAAGTA 60.159 45.455 0.00 0.00 40.96 2.24
2790 3784 4.025858 GTGCTCAGAGCCCTGCCA 62.026 66.667 20.16 0.00 41.51 4.92
2807 3801 5.714806 ACAGTAACACCCTATTCCCAAAATG 59.285 40.000 0.00 0.00 0.00 2.32
2921 3917 3.878237 ACTATGTACCGATCCCTCTGA 57.122 47.619 0.00 0.00 0.00 3.27
2930 3926 8.649841 CAATCGTTTCTTAAAACTATGTACCGA 58.350 33.333 0.00 0.00 42.18 4.69
3023 4019 7.226720 TCAATCCTACACTTCAAAAAGTCTGAC 59.773 37.037 0.00 0.00 43.99 3.51
3111 4107 4.703645 TCTGGAGAAGACAGATAACACG 57.296 45.455 0.00 0.00 39.87 4.49
3135 4131 8.354426 GGTAGGTCTTATTGAGTCTAGATTGAC 58.646 40.741 0.00 0.00 37.23 3.18
3376 4373 9.753674 TGAATAATAAGTTTCTCCAGAATTGGT 57.246 29.630 0.00 0.00 45.26 3.67
3504 4501 8.788806 GTTTCTATCATAGAATTCTCTCTCGGA 58.211 37.037 12.24 2.89 43.72 4.55
3531 4528 5.368989 ACTGCTGGGTTATAGCTTTCATAC 58.631 41.667 0.00 0.00 41.66 2.39
3585 4582 7.824289 TCGTCTTCCTTATGACATTTGATTTCT 59.176 33.333 0.00 0.00 33.18 2.52
3609 4606 0.523072 CAATCTGGCAAACCACCTCG 59.477 55.000 0.00 0.00 42.67 4.63
3619 4616 4.259356 CTCAAGATCTTCACAATCTGGCA 58.741 43.478 4.57 0.00 33.78 4.92
3688 4685 6.485171 ACTTACTTCCAGAAACATATGCCTT 58.515 36.000 1.58 0.00 0.00 4.35
3810 4807 2.094894 GCCACAATCAAGTCGAGTGATG 59.905 50.000 11.32 8.69 42.40 3.07
3916 4914 0.740149 TGCATTCCATTAAGCCTGCG 59.260 50.000 0.00 0.00 32.42 5.18
3918 4916 3.194116 ACACTTGCATTCCATTAAGCCTG 59.806 43.478 0.00 0.00 0.00 4.85
4029 5027 2.505407 CCAATGTGGACTCCAGGTATGA 59.495 50.000 0.00 0.00 40.96 2.15
4232 5231 8.247562 GGTATCATGATCTACAGTCATTCCTAC 58.752 40.741 12.53 0.00 34.21 3.18
4254 5253 9.055689 AGCTAATGGAGATAATTGAGATGGTAT 57.944 33.333 0.00 0.00 0.00 2.73
4272 5284 3.931468 CAGAGAGTTGTGTCAGCTAATGG 59.069 47.826 0.00 0.00 0.00 3.16
4302 5314 1.736681 GAGTGAAGAGATGCAACAGGC 59.263 52.381 0.00 0.00 45.13 4.85
4303 5315 3.049708 TGAGTGAAGAGATGCAACAGG 57.950 47.619 0.00 0.00 0.00 4.00
4385 5397 2.791655 GGCCTACAAAGCTACCAAAGT 58.208 47.619 0.00 0.00 0.00 2.66
4509 5527 0.946221 GTCTCCTTGGTCTGTGTGCG 60.946 60.000 0.00 0.00 0.00 5.34
4701 5726 1.086696 CACTTACACCGGGATGCAAG 58.913 55.000 6.32 4.85 0.00 4.01
4786 5811 1.678101 AGCTGAAACCTGCAGAAACAC 59.322 47.619 17.39 3.18 35.39 3.32
4794 5819 1.230635 TGCTCGAAGCTGAAACCTGC 61.231 55.000 8.07 0.00 42.97 4.85
4803 5828 1.405105 GATCTCAGTCTGCTCGAAGCT 59.595 52.381 8.07 0.00 42.97 3.74
4804 5829 1.535860 GGATCTCAGTCTGCTCGAAGC 60.536 57.143 0.00 0.00 42.82 3.86
4805 5830 2.023673 AGGATCTCAGTCTGCTCGAAG 58.976 52.381 0.00 0.00 0.00 3.79
4845 5874 1.965754 GCCCAAGCGATCAGGAGACT 61.966 60.000 0.00 0.00 46.44 3.24
4871 5900 4.806247 GCCACAAACTCATAGCTGTAGTAG 59.194 45.833 0.00 0.00 0.00 2.57
4872 5901 4.382685 GGCCACAAACTCATAGCTGTAGTA 60.383 45.833 0.00 0.00 0.00 1.82
4873 5902 3.600388 GCCACAAACTCATAGCTGTAGT 58.400 45.455 0.00 0.00 0.00 2.73
4924 5959 3.385079 GAACGCAAGGTTCGGATAAAG 57.615 47.619 0.00 0.00 45.05 1.85
4992 6027 6.474102 GCAAACGAACTTGAGACCAATTTTAA 59.526 34.615 0.00 0.00 0.00 1.52
5026 6061 1.458398 CATTGCATAACGGACACCCA 58.542 50.000 0.00 0.00 0.00 4.51
5077 6112 7.257722 CAAGGACAGATAACAAACAACACTTT 58.742 34.615 0.00 0.00 0.00 2.66
5139 6174 6.183360 GCTGATAATAAGCAAGTTGGTGACAT 60.183 38.462 8.61 0.00 39.54 3.06
5140 6175 5.123820 GCTGATAATAAGCAAGTTGGTGACA 59.876 40.000 8.61 0.00 40.52 3.58
5141 6176 5.355350 AGCTGATAATAAGCAAGTTGGTGAC 59.645 40.000 8.61 0.00 43.37 3.67
5142 6177 5.500234 AGCTGATAATAAGCAAGTTGGTGA 58.500 37.500 8.61 0.47 43.37 4.02
5143 6178 5.220931 GGAGCTGATAATAAGCAAGTTGGTG 60.221 44.000 8.61 0.00 43.37 4.17
5144 6179 4.884164 GGAGCTGATAATAAGCAAGTTGGT 59.116 41.667 0.63 0.63 43.37 3.67
5145 6180 4.024556 CGGAGCTGATAATAAGCAAGTTGG 60.025 45.833 4.75 0.00 43.37 3.77
5165 6202 0.251386 AGACAGACAGGAGAAGCGGA 60.251 55.000 0.00 0.00 0.00 5.54
5169 6206 5.186797 ACATAAAGGAGACAGACAGGAGAAG 59.813 44.000 0.00 0.00 0.00 2.85
5173 6210 5.544176 AGAAACATAAAGGAGACAGACAGGA 59.456 40.000 0.00 0.00 0.00 3.86
5205 6242 5.760253 CACAGCCAACCGAATAAATCTATCT 59.240 40.000 0.00 0.00 0.00 1.98
5206 6243 5.758296 TCACAGCCAACCGAATAAATCTATC 59.242 40.000 0.00 0.00 0.00 2.08
5207 6244 5.680619 TCACAGCCAACCGAATAAATCTAT 58.319 37.500 0.00 0.00 0.00 1.98
5208 6245 5.092554 TCACAGCCAACCGAATAAATCTA 57.907 39.130 0.00 0.00 0.00 1.98
5209 6246 3.950397 TCACAGCCAACCGAATAAATCT 58.050 40.909 0.00 0.00 0.00 2.40
5210 6247 4.096382 ACATCACAGCCAACCGAATAAATC 59.904 41.667 0.00 0.00 0.00 2.17
5211 6248 4.016444 ACATCACAGCCAACCGAATAAAT 58.984 39.130 0.00 0.00 0.00 1.40
5212 6249 3.190327 CACATCACAGCCAACCGAATAAA 59.810 43.478 0.00 0.00 0.00 1.40
5213 6250 2.746904 CACATCACAGCCAACCGAATAA 59.253 45.455 0.00 0.00 0.00 1.40
5214 6251 2.290008 ACACATCACAGCCAACCGAATA 60.290 45.455 0.00 0.00 0.00 1.75
5215 6252 1.167851 CACATCACAGCCAACCGAAT 58.832 50.000 0.00 0.00 0.00 3.34
5216 6253 0.179032 ACACATCACAGCCAACCGAA 60.179 50.000 0.00 0.00 0.00 4.30
5217 6254 0.884259 CACACATCACAGCCAACCGA 60.884 55.000 0.00 0.00 0.00 4.69
5218 6255 1.575922 CACACATCACAGCCAACCG 59.424 57.895 0.00 0.00 0.00 4.44
5219 6256 1.286880 GCACACATCACAGCCAACC 59.713 57.895 0.00 0.00 0.00 3.77
5220 6257 0.318107 GTGCACACATCACAGCCAAC 60.318 55.000 13.17 0.00 34.73 3.77
5221 6258 0.750911 TGTGCACACATCACAGCCAA 60.751 50.000 17.42 0.00 39.29 4.52
5222 6259 1.153005 TGTGCACACATCACAGCCA 60.153 52.632 17.42 0.00 39.29 4.75
5223 6260 3.748623 TGTGCACACATCACAGCC 58.251 55.556 17.42 0.00 39.29 4.85
5231 6268 1.745653 TCGAACCAAAATGTGCACACA 59.254 42.857 24.37 5.85 46.44 3.72
5232 6269 2.483583 TCGAACCAAAATGTGCACAC 57.516 45.000 24.37 5.66 0.00 3.82
5233 6270 3.510388 TTTCGAACCAAAATGTGCACA 57.490 38.095 24.08 24.08 0.00 4.57
5234 6271 4.760683 CAATTTCGAACCAAAATGTGCAC 58.239 39.130 10.75 10.75 0.00 4.57
5235 6272 3.247173 GCAATTTCGAACCAAAATGTGCA 59.753 39.130 0.00 0.00 34.26 4.57
5236 6273 3.494251 AGCAATTTCGAACCAAAATGTGC 59.506 39.130 0.00 2.20 34.27 4.57
5237 6274 5.655893 AAGCAATTTCGAACCAAAATGTG 57.344 34.783 0.00 0.00 0.00 3.21
5238 6275 5.007528 CCAAAGCAATTTCGAACCAAAATGT 59.992 36.000 0.00 0.00 0.00 2.71
5239 6276 5.236047 TCCAAAGCAATTTCGAACCAAAATG 59.764 36.000 0.00 0.00 0.00 2.32
5240 6277 5.236263 GTCCAAAGCAATTTCGAACCAAAAT 59.764 36.000 0.00 0.00 0.00 1.82
5241 6278 4.568760 GTCCAAAGCAATTTCGAACCAAAA 59.431 37.500 0.00 0.00 0.00 2.44
5242 6279 4.116238 GTCCAAAGCAATTTCGAACCAAA 58.884 39.130 0.00 0.00 0.00 3.28
5243 6280 3.491792 GGTCCAAAGCAATTTCGAACCAA 60.492 43.478 0.00 0.00 0.00 3.67
5244 6281 2.035321 GGTCCAAAGCAATTTCGAACCA 59.965 45.455 0.00 0.00 0.00 3.67
5245 6282 2.672714 GGTCCAAAGCAATTTCGAACC 58.327 47.619 0.00 0.00 0.00 3.62
5246 6283 2.031508 TCGGTCCAAAGCAATTTCGAAC 60.032 45.455 0.00 0.00 0.00 3.95
5247 6284 2.222886 TCGGTCCAAAGCAATTTCGAA 58.777 42.857 0.00 0.00 0.00 3.71
5248 6285 1.885560 TCGGTCCAAAGCAATTTCGA 58.114 45.000 0.00 0.00 0.00 3.71
5249 6286 2.420022 AGATCGGTCCAAAGCAATTTCG 59.580 45.455 0.00 0.00 0.00 3.46
5250 6287 3.440173 TCAGATCGGTCCAAAGCAATTTC 59.560 43.478 0.00 0.00 0.00 2.17
5251 6288 3.420893 TCAGATCGGTCCAAAGCAATTT 58.579 40.909 0.00 0.00 0.00 1.82
5252 6289 3.071874 TCAGATCGGTCCAAAGCAATT 57.928 42.857 0.00 0.00 0.00 2.32
5253 6290 2.787473 TCAGATCGGTCCAAAGCAAT 57.213 45.000 0.00 0.00 0.00 3.56
5254 6291 2.290260 ACATCAGATCGGTCCAAAGCAA 60.290 45.455 0.00 0.00 0.00 3.91
5255 6292 1.278985 ACATCAGATCGGTCCAAAGCA 59.721 47.619 0.00 0.00 0.00 3.91
5256 6293 1.667724 CACATCAGATCGGTCCAAAGC 59.332 52.381 0.00 0.00 0.00 3.51
5257 6294 1.667724 GCACATCAGATCGGTCCAAAG 59.332 52.381 0.00 0.00 0.00 2.77
5258 6295 1.278985 AGCACATCAGATCGGTCCAAA 59.721 47.619 0.00 0.00 0.00 3.28
5259 6296 0.904649 AGCACATCAGATCGGTCCAA 59.095 50.000 0.00 0.00 0.00 3.53
5260 6297 0.176449 CAGCACATCAGATCGGTCCA 59.824 55.000 0.00 0.00 0.00 4.02
5261 6298 0.461548 TCAGCACATCAGATCGGTCC 59.538 55.000 0.00 0.00 0.00 4.46
5262 6299 2.035704 AGATCAGCACATCAGATCGGTC 59.964 50.000 0.00 0.00 41.13 4.79
5263 6300 2.037901 AGATCAGCACATCAGATCGGT 58.962 47.619 0.00 0.00 41.13 4.69
5264 6301 2.035576 TCAGATCAGCACATCAGATCGG 59.964 50.000 0.00 0.00 41.13 4.18
5265 6302 3.051327 GTCAGATCAGCACATCAGATCG 58.949 50.000 0.00 0.00 41.13 3.69
5266 6303 4.056092 TGTCAGATCAGCACATCAGATC 57.944 45.455 0.00 0.00 37.82 2.75
5267 6304 4.443621 CTTGTCAGATCAGCACATCAGAT 58.556 43.478 0.00 0.00 0.00 2.90
5268 6305 3.369157 CCTTGTCAGATCAGCACATCAGA 60.369 47.826 0.00 0.00 0.00 3.27
5269 6306 2.937149 CCTTGTCAGATCAGCACATCAG 59.063 50.000 0.00 0.00 0.00 2.90
5270 6307 2.938314 GCCTTGTCAGATCAGCACATCA 60.938 50.000 0.00 0.00 0.00 3.07
5271 6308 1.669779 GCCTTGTCAGATCAGCACATC 59.330 52.381 0.00 0.00 0.00 3.06
5296 6333 1.001641 AGGAGTGCAGGCATGAACC 60.002 57.895 5.70 0.00 35.26 3.62
5334 6387 4.133078 CTCTAGATGCAGATTTGGAACCC 58.867 47.826 0.00 0.00 0.00 4.11
5340 6393 3.801050 CGACACCTCTAGATGCAGATTTG 59.199 47.826 0.00 0.00 0.00 2.32
5341 6394 3.739519 GCGACACCTCTAGATGCAGATTT 60.740 47.826 0.00 0.00 0.00 2.17
5357 6410 3.363178 CCTTTTCAAGAAACTGCGACAC 58.637 45.455 0.00 0.00 0.00 3.67
5364 6417 3.292492 ACGACCCCTTTTCAAGAAACT 57.708 42.857 0.00 0.00 0.00 2.66
5399 6462 3.553828 ATTAGCCTGCGCCTTACTTTA 57.446 42.857 4.18 0.00 34.57 1.85
5409 6472 3.466836 TGGATGAACTTATTAGCCTGCG 58.533 45.455 0.00 0.00 0.00 5.18
5412 6475 4.410228 TCTGCTGGATGAACTTATTAGCCT 59.590 41.667 0.00 0.00 0.00 4.58
5413 6476 4.708177 TCTGCTGGATGAACTTATTAGCC 58.292 43.478 0.00 0.00 0.00 3.93
5414 6477 6.317391 ACTTTCTGCTGGATGAACTTATTAGC 59.683 38.462 0.00 0.00 0.00 3.09
5416 6479 8.514594 CAAACTTTCTGCTGGATGAACTTATTA 58.485 33.333 0.00 0.00 0.00 0.98
5417 6480 7.231317 TCAAACTTTCTGCTGGATGAACTTATT 59.769 33.333 0.00 0.00 0.00 1.40
5419 6482 6.061441 TCAAACTTTCTGCTGGATGAACTTA 58.939 36.000 0.00 0.00 0.00 2.24
5421 6484 4.464008 TCAAACTTTCTGCTGGATGAACT 58.536 39.130 0.00 0.00 0.00 3.01
5422 6485 4.836125 TCAAACTTTCTGCTGGATGAAC 57.164 40.909 0.00 0.00 0.00 3.18
5423 6486 5.047802 GGATTCAAACTTTCTGCTGGATGAA 60.048 40.000 0.00 0.00 0.00 2.57
5428 6495 4.077822 AGAGGATTCAAACTTTCTGCTGG 58.922 43.478 0.00 0.00 0.00 4.85
5436 6503 8.469309 TCAAGATTTGAAGAGGATTCAAACTT 57.531 30.769 15.70 16.11 46.95 2.66
5465 6532 8.977412 TGTCTTTTGTAGTACCTGATGATGATA 58.023 33.333 0.00 0.00 0.00 2.15
5470 6537 5.305902 TGGTGTCTTTTGTAGTACCTGATGA 59.694 40.000 0.00 0.00 35.01 2.92
5471 6538 5.408604 GTGGTGTCTTTTGTAGTACCTGATG 59.591 44.000 0.00 0.00 35.01 3.07
5472 6539 5.548406 GTGGTGTCTTTTGTAGTACCTGAT 58.452 41.667 0.00 0.00 35.01 2.90
5473 6540 4.500205 CGTGGTGTCTTTTGTAGTACCTGA 60.500 45.833 0.00 0.00 35.01 3.86
5474 6541 3.739300 CGTGGTGTCTTTTGTAGTACCTG 59.261 47.826 0.00 0.00 35.01 4.00
5475 6542 3.801293 GCGTGGTGTCTTTTGTAGTACCT 60.801 47.826 0.00 0.00 35.01 3.08
5476 6543 2.477754 GCGTGGTGTCTTTTGTAGTACC 59.522 50.000 0.00 0.00 34.73 3.34
5477 6544 2.154389 CGCGTGGTGTCTTTTGTAGTAC 59.846 50.000 0.00 0.00 0.00 2.73
5478 6545 2.034432 TCGCGTGGTGTCTTTTGTAGTA 59.966 45.455 5.77 0.00 0.00 1.82
5479 6546 1.202440 TCGCGTGGTGTCTTTTGTAGT 60.202 47.619 5.77 0.00 0.00 2.73
5480 6547 1.493772 TCGCGTGGTGTCTTTTGTAG 58.506 50.000 5.77 0.00 0.00 2.74
5481 6548 1.795872 CATCGCGTGGTGTCTTTTGTA 59.204 47.619 5.77 0.00 0.00 2.41
5482 6549 0.586319 CATCGCGTGGTGTCTTTTGT 59.414 50.000 5.77 0.00 0.00 2.83
5483 6550 0.725784 GCATCGCGTGGTGTCTTTTG 60.726 55.000 11.48 0.00 0.00 2.44
5506 6573 0.175531 GGCAATACAACACCATGGCC 59.824 55.000 13.04 0.00 0.00 5.36
5511 6578 2.328856 CGCGGGCAATACAACACCA 61.329 57.895 0.00 0.00 0.00 4.17
5513 6580 2.202427 GCGCGGGCAATACAACAC 60.202 61.111 20.76 0.00 39.62 3.32
5514 6581 3.794242 CGCGCGGGCAATACAACA 61.794 61.111 24.84 0.00 39.92 3.33
5515 6582 4.530325 CCGCGCGGGCAATACAAC 62.530 66.667 40.50 0.00 39.92 3.32
5536 6603 2.033194 GCTGCCTGGTGGTACGTTC 61.033 63.158 0.00 0.00 35.27 3.95
5538 6605 3.238497 TGCTGCCTGGTGGTACGT 61.238 61.111 0.00 0.00 35.27 3.57
5539 6606 2.434884 CTGCTGCCTGGTGGTACG 60.435 66.667 0.00 0.00 35.27 3.67
5561 6634 5.068198 GGGAACGGAATACTGTGATGTACTA 59.932 44.000 0.00 0.00 35.61 1.82
5562 6635 4.142004 GGGAACGGAATACTGTGATGTACT 60.142 45.833 0.00 0.00 35.61 2.73
5563 6636 4.117685 GGGAACGGAATACTGTGATGTAC 58.882 47.826 0.00 0.00 35.61 2.90
5597 6670 3.490759 GACGGCAGCCACGTGATG 61.491 66.667 19.30 16.25 45.68 3.07
5609 6682 2.682494 TGGGGGTAGAGTGACGGC 60.682 66.667 0.00 0.00 0.00 5.68
5629 6705 3.722295 CGTGCGATTTGTGGCCGT 61.722 61.111 0.00 0.00 0.00 5.68
5630 6706 3.367051 CTCGTGCGATTTGTGGCCG 62.367 63.158 0.00 0.00 0.00 6.13
5650 6726 1.281925 CCATGTTACCCCCTGCTCCT 61.282 60.000 0.00 0.00 0.00 3.69
5651 6727 1.227383 CCATGTTACCCCCTGCTCC 59.773 63.158 0.00 0.00 0.00 4.70
5652 6728 1.227383 CCCATGTTACCCCCTGCTC 59.773 63.158 0.00 0.00 0.00 4.26
5653 6729 1.543896 ACCCATGTTACCCCCTGCT 60.544 57.895 0.00 0.00 0.00 4.24
5654 6730 1.379843 CACCCATGTTACCCCCTGC 60.380 63.158 0.00 0.00 0.00 4.85
5655 6731 0.701731 TTCACCCATGTTACCCCCTG 59.298 55.000 0.00 0.00 0.00 4.45
5656 6732 0.702316 GTTCACCCATGTTACCCCCT 59.298 55.000 0.00 0.00 0.00 4.79
5657 6733 0.406361 TGTTCACCCATGTTACCCCC 59.594 55.000 0.00 0.00 0.00 5.40
5689 6765 4.889780 ACCTGATTAAGTCTGATCCCTCT 58.110 43.478 0.00 0.00 0.00 3.69
5747 6823 1.441515 CGGGATACGGACGCATACG 60.442 63.158 0.00 0.00 41.83 3.06
5748 6824 4.546637 CGGGATACGGACGCATAC 57.453 61.111 0.00 0.00 39.75 2.39
5803 6879 3.398353 CTTCCGCTCTCGACCGACC 62.398 68.421 0.00 0.00 38.10 4.79
5804 6880 1.919956 TTCTTCCGCTCTCGACCGAC 61.920 60.000 0.00 0.00 38.10 4.79
5805 6881 1.673337 TTCTTCCGCTCTCGACCGA 60.673 57.895 0.00 0.00 38.10 4.69
5806 6882 1.514443 GTTCTTCCGCTCTCGACCG 60.514 63.158 0.00 0.00 38.10 4.79
5807 6883 1.514443 CGTTCTTCCGCTCTCGACC 60.514 63.158 0.00 0.00 38.10 4.79
5808 6884 1.514443 CCGTTCTTCCGCTCTCGAC 60.514 63.158 0.00 0.00 38.10 4.20
5809 6885 2.697761 CCCGTTCTTCCGCTCTCGA 61.698 63.158 0.00 0.00 38.10 4.04
5810 6886 2.202623 CCCGTTCTTCCGCTCTCG 60.203 66.667 0.00 0.00 0.00 4.04
5811 6887 1.885163 TTCCCCGTTCTTCCGCTCTC 61.885 60.000 0.00 0.00 0.00 3.20
5812 6888 1.477685 TTTCCCCGTTCTTCCGCTCT 61.478 55.000 0.00 0.00 0.00 4.09
5813 6889 0.604511 TTTTCCCCGTTCTTCCGCTC 60.605 55.000 0.00 0.00 0.00 5.03
5814 6890 1.452801 TTTTCCCCGTTCTTCCGCT 59.547 52.632 0.00 0.00 0.00 5.52
5815 6891 4.068280 TTTTCCCCGTTCTTCCGC 57.932 55.556 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.