Multiple sequence alignment - TraesCS7A01G198300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G198300 chr7A 100.000 3074 0 0 1 3074 159559420 159556347 0.000000e+00 5677
1 TraesCS7A01G198300 chr7A 85.984 849 65 26 104 933 159577113 159576300 0.000000e+00 859
2 TraesCS7A01G198300 chr7A 86.269 721 73 14 1 710 159578110 159577405 0.000000e+00 760
3 TraesCS7A01G198300 chr7A 91.111 90 5 3 104 192 159577209 159577122 5.380000e-23 119
4 TraesCS7A01G198300 chr7D 88.314 3209 186 64 1 3074 159061672 159064826 0.000000e+00 3674
5 TraesCS7A01G198300 chr7D 83.227 626 70 14 2472 3068 188949573 188950192 2.700000e-150 542
6 TraesCS7A01G198300 chr7B 88.522 2213 130 51 1 2147 119699477 119701631 0.000000e+00 2566
7 TraesCS7A01G198300 chr7B 88.494 956 56 26 2148 3068 119701660 119702596 0.000000e+00 1107
8 TraesCS7A01G198300 chr7B 82.181 651 76 21 2453 3074 333348060 333348699 9.770000e-145 523
9 TraesCS7A01G198300 chr6A 87.436 971 104 14 1058 2013 548110753 548111720 0.000000e+00 1101
10 TraesCS7A01G198300 chr6D 86.536 973 117 10 1054 2013 401737100 401738071 0.000000e+00 1059
11 TraesCS7A01G198300 chr6B 85.263 1045 131 14 983 2013 602504159 602505194 0.000000e+00 1055
12 TraesCS7A01G198300 chr6B 83.860 285 34 8 1159 1431 85848898 85849182 8.450000e-66 261
13 TraesCS7A01G198300 chr4D 85.269 835 107 9 1159 1980 399420202 399419371 0.000000e+00 846
14 TraesCS7A01G198300 chr4D 77.088 838 148 37 1169 1984 9206428 9207243 7.820000e-121 444
15 TraesCS7A01G198300 chr1B 82.767 824 113 14 1160 1967 668249327 668250137 0.000000e+00 708
16 TraesCS7A01G198300 chr4A 76.822 837 152 35 1169 1984 594270479 594269664 1.690000e-117 433
17 TraesCS7A01G198300 chr4B 76.639 839 150 38 1169 1984 17083453 17084268 3.660000e-114 422


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G198300 chr7A 159556347 159559420 3073 True 5677.000000 5677 100.000 1 3074 1 chr7A.!!$R1 3073
1 TraesCS7A01G198300 chr7A 159576300 159578110 1810 True 579.333333 859 87.788 1 933 3 chr7A.!!$R2 932
2 TraesCS7A01G198300 chr7D 159061672 159064826 3154 False 3674.000000 3674 88.314 1 3074 1 chr7D.!!$F1 3073
3 TraesCS7A01G198300 chr7D 188949573 188950192 619 False 542.000000 542 83.227 2472 3068 1 chr7D.!!$F2 596
4 TraesCS7A01G198300 chr7B 119699477 119702596 3119 False 1836.500000 2566 88.508 1 3068 2 chr7B.!!$F2 3067
5 TraesCS7A01G198300 chr7B 333348060 333348699 639 False 523.000000 523 82.181 2453 3074 1 chr7B.!!$F1 621
6 TraesCS7A01G198300 chr6A 548110753 548111720 967 False 1101.000000 1101 87.436 1058 2013 1 chr6A.!!$F1 955
7 TraesCS7A01G198300 chr6D 401737100 401738071 971 False 1059.000000 1059 86.536 1054 2013 1 chr6D.!!$F1 959
8 TraesCS7A01G198300 chr6B 602504159 602505194 1035 False 1055.000000 1055 85.263 983 2013 1 chr6B.!!$F2 1030
9 TraesCS7A01G198300 chr4D 399419371 399420202 831 True 846.000000 846 85.269 1159 1980 1 chr4D.!!$R1 821
10 TraesCS7A01G198300 chr4D 9206428 9207243 815 False 444.000000 444 77.088 1169 1984 1 chr4D.!!$F1 815
11 TraesCS7A01G198300 chr1B 668249327 668250137 810 False 708.000000 708 82.767 1160 1967 1 chr1B.!!$F1 807
12 TraesCS7A01G198300 chr4A 594269664 594270479 815 True 433.000000 433 76.822 1169 1984 1 chr4A.!!$R1 815
13 TraesCS7A01G198300 chr4B 17083453 17084268 815 False 422.000000 422 76.639 1169 1984 1 chr4B.!!$F1 815

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
981 1956 0.179189 CGCCGCAAGAATCCAAGAAC 60.179 55.0 0.0 0.0 43.02 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 3358 0.034089 GCAACCAGCCCCTAGAATGT 60.034 55.0 0.0 0.0 37.23 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 7.173218 TGGAATCTTGAGTGTGTAGACATTTTC 59.827 37.037 0.00 0.00 33.63 2.29
86 87 1.420430 AGACCACCGGAGAAAGAACA 58.580 50.000 9.46 0.00 0.00 3.18
87 88 1.070289 AGACCACCGGAGAAAGAACAC 59.930 52.381 9.46 0.00 0.00 3.32
91 92 0.317479 ACCGGAGAAAGAACACCTCG 59.683 55.000 9.46 0.00 0.00 4.63
96 97 3.553508 CGGAGAAAGAACACCTCGGTTAA 60.554 47.826 0.00 0.00 0.00 2.01
134 135 6.020995 ACGTGAGAAATAAAACGCAACAAAAG 60.021 34.615 0.00 0.00 39.58 2.27
237 239 8.024865 CGATATTAATTTGCACATGACATGGAT 58.975 33.333 19.39 0.00 33.60 3.41
240 242 4.649088 ATTTGCACATGACATGGATGAG 57.351 40.909 19.39 6.93 33.60 2.90
241 243 2.047002 TGCACATGACATGGATGAGG 57.953 50.000 19.39 3.37 33.60 3.86
277 280 1.386525 AACATGGCCGCCATTGCTAG 61.387 55.000 22.88 13.18 42.23 3.42
318 321 6.449635 ACAATACAATGGAATACGCAATGT 57.550 33.333 0.00 0.00 0.00 2.71
320 323 5.689383 ATACAATGGAATACGCAATGTCC 57.311 39.130 0.00 0.00 0.00 4.02
338 341 9.023967 GCAATGTCCAATAAAATATCTCAACAC 57.976 33.333 0.00 0.00 0.00 3.32
365 368 6.214005 TCCCAGATATATGAAGCACATCATCA 59.786 38.462 0.00 0.00 40.44 3.07
381 384 7.407337 CACATCATCAAGATACACATGTGAAG 58.593 38.462 31.94 13.68 41.34 3.02
383 386 7.279536 ACATCATCAAGATACACATGTGAAGAC 59.720 37.037 31.94 18.05 34.43 3.01
387 390 4.478206 AGATACACATGTGAAGACCCAG 57.522 45.455 31.94 2.46 0.00 4.45
427 430 1.666189 GCGCCTAGTCCAAAACTCATC 59.334 52.381 0.00 0.00 39.55 2.92
432 435 4.363999 CCTAGTCCAAAACTCATCTAGCG 58.636 47.826 0.00 0.00 39.55 4.26
489 498 6.939730 TGCAATTGACTTTATAGACCAGACAA 59.060 34.615 10.34 0.00 0.00 3.18
494 503 7.724305 TGACTTTATAGACCAGACAAAACAC 57.276 36.000 0.00 0.00 0.00 3.32
495 504 6.708949 TGACTTTATAGACCAGACAAAACACC 59.291 38.462 0.00 0.00 0.00 4.16
499 508 7.883391 TTATAGACCAGACAAAACACCAAAA 57.117 32.000 0.00 0.00 0.00 2.44
560 1454 7.087409 TGTACAAATATGTCAATGCCAAGAG 57.913 36.000 0.00 0.00 41.05 2.85
587 1481 5.051891 AGTACAACATGAGCTCAAAATGC 57.948 39.130 22.50 8.47 0.00 3.56
588 1482 3.308438 ACAACATGAGCTCAAAATGCC 57.692 42.857 22.50 0.00 0.00 4.40
616 1510 6.759497 AAAAACCACTCTCACCATTATAGC 57.241 37.500 0.00 0.00 0.00 2.97
617 1511 5.435686 AAACCACTCTCACCATTATAGCA 57.564 39.130 0.00 0.00 0.00 3.49
618 1512 4.408182 ACCACTCTCACCATTATAGCAC 57.592 45.455 0.00 0.00 0.00 4.40
619 1513 4.033709 ACCACTCTCACCATTATAGCACT 58.966 43.478 0.00 0.00 0.00 4.40
620 1514 5.208890 ACCACTCTCACCATTATAGCACTA 58.791 41.667 0.00 0.00 0.00 2.74
621 1515 5.069251 ACCACTCTCACCATTATAGCACTAC 59.931 44.000 0.00 0.00 0.00 2.73
649 1545 5.528870 AGTATTCTTTTTGGCAAAACCTCG 58.471 37.500 24.04 12.99 40.22 4.63
719 1641 6.757897 ATTAAAGCATGCAACAGCTAGTAA 57.242 33.333 21.98 12.36 40.90 2.24
735 1657 3.194005 AGTAATAGTGTGGCCGGATTG 57.806 47.619 5.05 0.00 0.00 2.67
741 1663 0.894835 GTGTGGCCGGATTGGAAAAT 59.105 50.000 5.05 0.00 42.00 1.82
747 1669 2.361119 GGCCGGATTGGAAAATTAGACC 59.639 50.000 5.05 0.00 42.00 3.85
779 1701 3.959991 GAGCAACCTCCCAGCGTCC 62.960 68.421 0.00 0.00 31.68 4.79
810 1732 7.539710 GGTGATCATTTTAGGAAAACGTTTACC 59.460 37.037 15.03 8.87 32.37 2.85
825 1747 1.898330 TTACCCCTACGCGTTTCCCC 61.898 60.000 20.78 0.00 0.00 4.81
859 1781 3.108376 ACCCCTCTTTATCACTGGAGAC 58.892 50.000 0.00 0.00 0.00 3.36
860 1782 2.101582 CCCCTCTTTATCACTGGAGACG 59.898 54.545 0.00 0.00 0.00 4.18
861 1783 3.024547 CCCTCTTTATCACTGGAGACGA 58.975 50.000 0.00 0.00 0.00 4.20
866 1788 4.878971 TCTTTATCACTGGAGACGAGAGAG 59.121 45.833 0.00 0.00 0.00 3.20
981 1956 0.179189 CGCCGCAAGAATCCAAGAAC 60.179 55.000 0.00 0.00 43.02 3.01
1045 2020 1.204467 CGCTGCTCTTCTTCTTCCTCT 59.796 52.381 0.00 0.00 0.00 3.69
1046 2021 2.353605 CGCTGCTCTTCTTCTTCCTCTT 60.354 50.000 0.00 0.00 0.00 2.85
1048 2023 3.860641 CTGCTCTTCTTCTTCCTCTTCC 58.139 50.000 0.00 0.00 0.00 3.46
1693 2688 4.735132 ACACCGGCGTCATGGTCG 62.735 66.667 6.01 0.00 35.96 4.79
1839 2834 4.394712 GTGGAGGCCGTGGACCTG 62.395 72.222 0.00 0.00 37.77 4.00
1998 2993 1.372997 CGACCACACCTGGAAGTCG 60.373 63.158 0.00 9.22 43.52 4.18
2079 3074 0.976073 TTTCCGCCTGGTAGAGGGAG 60.976 60.000 0.00 0.00 43.07 4.30
2080 3075 3.541713 CCGCCTGGTAGAGGGAGC 61.542 72.222 0.00 0.00 43.07 4.70
2103 3098 1.202200 CCGTAGCTGCACTGACTAGAC 60.202 57.143 1.02 0.00 0.00 2.59
2221 3256 1.150536 CGAGGAGGAGGGAGGAGAG 59.849 68.421 0.00 0.00 0.00 3.20
2268 3305 7.588497 AGAGCTTGTTCTTTTTGGTAGAAAT 57.412 32.000 0.00 0.00 33.71 2.17
2281 3318 9.974980 TTTTTGGTAGAAATTCAGATTGGTTAC 57.025 29.630 0.00 0.00 0.00 2.50
2285 3322 5.880054 AGAAATTCAGATTGGTTACGTGG 57.120 39.130 0.00 0.00 0.00 4.94
2286 3323 5.313712 AGAAATTCAGATTGGTTACGTGGT 58.686 37.500 0.00 0.00 0.00 4.16
2320 3357 0.865769 CTTTTTGGTCGAGGTGGACG 59.134 55.000 0.00 0.00 37.82 4.79
2321 3358 0.464870 TTTTTGGTCGAGGTGGACGA 59.535 50.000 0.00 0.00 37.82 4.20
2333 3370 0.179081 GTGGACGACATTCTAGGGGC 60.179 60.000 0.00 0.00 0.00 5.80
2362 3399 4.776322 TCGCTGGATTGGTGGCGG 62.776 66.667 6.36 0.00 46.31 6.13
2404 3441 3.696548 GCTAGGAAAGACTGGGATTTTGG 59.303 47.826 0.00 0.00 0.00 3.28
2466 3503 7.148188 GCCTATGTGTTCTTGATCTGAAATTCA 60.148 37.037 0.00 0.00 0.00 2.57
2468 3505 7.756395 ATGTGTTCTTGATCTGAAATTCAGT 57.244 32.000 20.91 9.81 44.58 3.41
2469 3506 7.572523 TGTGTTCTTGATCTGAAATTCAGTT 57.427 32.000 20.91 13.87 44.58 3.16
2470 3507 7.420002 TGTGTTCTTGATCTGAAATTCAGTTG 58.580 34.615 20.91 9.18 44.58 3.16
2482 3519 5.124936 TGAAATTCAGTTGGATCTCTGCATG 59.875 40.000 0.00 0.00 0.00 4.06
2483 3520 3.986996 TTCAGTTGGATCTCTGCATGA 57.013 42.857 0.00 0.00 0.00 3.07
2489 3526 2.847441 TGGATCTCTGCATGATTGAGC 58.153 47.619 0.00 0.00 0.00 4.26
2508 3545 4.823442 TGAGCTGTGTCAAATTCAGTTGAT 59.177 37.500 0.00 0.00 39.61 2.57
2566 3607 1.398692 TGTGGTTTGTCCTTGGAAGC 58.601 50.000 0.00 0.00 37.07 3.86
2570 3611 1.341209 GGTTTGTCCTTGGAAGCCTTG 59.659 52.381 0.00 0.00 0.00 3.61
2582 3624 0.603975 AAGCCTTGAACTGTCGCTCC 60.604 55.000 0.00 0.00 0.00 4.70
2652 3698 5.769662 AGAATTCAGAACTGTGCCAACAATA 59.230 36.000 8.44 0.00 35.37 1.90
2678 3740 3.244976 GCGGATTGAAATGTTGAACTGG 58.755 45.455 0.00 0.00 0.00 4.00
2688 3750 5.796424 AATGTTGAACTGGAAAAGAGCAT 57.204 34.783 0.00 0.00 0.00 3.79
2724 3786 2.768253 TGGCTGTTCCTGATGTACTG 57.232 50.000 0.00 0.00 35.26 2.74
2738 3800 1.003118 TGTACTGCATTCCCCTGTGAC 59.997 52.381 0.00 0.00 0.00 3.67
2771 3847 9.606631 ATTCCTCTGTTACTCTGTTCATTATTC 57.393 33.333 0.00 0.00 0.00 1.75
2777 3853 8.777865 TGTTACTCTGTTCATTATTCCTCTTG 57.222 34.615 0.00 0.00 0.00 3.02
2794 3870 4.096984 CCTCTTGTGCAGGAAATCAATACC 59.903 45.833 0.00 0.00 31.91 2.73
2808 3884 2.105649 TCAATACCACACACAAGAGGCA 59.894 45.455 0.00 0.00 0.00 4.75
2818 3894 2.936919 ACAAGAGGCATGTGACTGAA 57.063 45.000 0.00 0.00 30.09 3.02
2819 3895 3.213206 ACAAGAGGCATGTGACTGAAA 57.787 42.857 0.00 0.00 30.09 2.69
2821 3897 3.953612 ACAAGAGGCATGTGACTGAAAAA 59.046 39.130 0.00 0.00 30.09 1.94
2839 3915 8.576442 ACTGAAAAAGTTCAAAGTTTCTCTTCA 58.424 29.630 7.74 7.74 43.18 3.02
2883 3965 0.472471 TCCCGCCTGGTTTCATATCC 59.528 55.000 0.00 0.00 34.77 2.59
2948 4034 5.180117 TCTTGAGCAACATCTCTAAACAAGC 59.820 40.000 0.00 0.00 34.31 4.01
2954 4040 5.747565 CAACATCTCTAAACAAGCGAACAA 58.252 37.500 0.00 0.00 0.00 2.83
3053 4139 2.825264 CTAGCCCAGGCCACTAGC 59.175 66.667 5.01 1.52 43.17 3.42
3068 4154 2.684881 CACTAGCACAATCATCCCAACC 59.315 50.000 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 7.944729 AGATTCCAAACAAAGTACATGCTAT 57.055 32.000 0.00 0.00 0.00 2.97
55 56 5.047519 TCTCCGGTGGTCTTAGAGTTAAAAG 60.048 44.000 0.00 0.00 0.00 2.27
86 87 5.838531 TGACATTTTGTTTTAACCGAGGT 57.161 34.783 0.00 0.00 0.00 3.85
87 88 5.172411 CGTTGACATTTTGTTTTAACCGAGG 59.828 40.000 0.00 0.00 0.00 4.63
91 92 6.748198 TCTCACGTTGACATTTTGTTTTAACC 59.252 34.615 0.00 0.00 0.00 2.85
96 97 8.918961 TTATTTCTCACGTTGACATTTTGTTT 57.081 26.923 0.00 0.00 0.00 2.83
134 135 8.770438 TGTGCCAAAATATGTTTCCTAATTTC 57.230 30.769 0.00 0.00 0.00 2.17
200 202 8.503196 GTGCAAATTAATATCGATATCCACACA 58.497 33.333 18.01 8.45 0.00 3.72
301 304 4.368874 TTGGACATTGCGTATTCCATTG 57.631 40.909 0.84 0.00 37.97 2.82
311 314 7.914871 TGTTGAGATATTTTATTGGACATTGCG 59.085 33.333 0.00 0.00 0.00 4.85
318 321 8.058235 TGGGATGTGTTGAGATATTTTATTGGA 58.942 33.333 0.00 0.00 0.00 3.53
320 323 9.123902 TCTGGGATGTGTTGAGATATTTTATTG 57.876 33.333 0.00 0.00 0.00 1.90
338 341 6.412214 TGATGTGCTTCATATATCTGGGATG 58.588 40.000 0.00 0.00 36.83 3.51
365 368 4.287067 ACTGGGTCTTCACATGTGTATCTT 59.713 41.667 24.63 0.23 0.00 2.40
381 384 3.852205 GCTTTCGCAAACTAAACTGGGTC 60.852 47.826 0.00 0.00 35.78 4.46
383 386 2.607038 GGCTTTCGCAAACTAAACTGGG 60.607 50.000 0.00 0.00 38.10 4.45
387 390 1.664874 CCCGGCTTTCGCAAACTAAAC 60.665 52.381 0.00 0.00 38.10 2.01
406 409 0.321298 TGAGTTTTGGACTAGGCGCC 60.321 55.000 21.89 21.89 39.19 6.53
408 411 3.252974 AGATGAGTTTTGGACTAGGCG 57.747 47.619 0.00 0.00 39.19 5.52
417 420 6.892691 AGTTTTCTTCGCTAGATGAGTTTTG 58.107 36.000 0.00 0.00 33.02 2.44
489 498 8.538701 TCTGGCATTGATATATTTTTGGTGTTT 58.461 29.630 0.00 0.00 0.00 2.83
548 557 7.791029 TGTTGTACTATATCTCTTGGCATTGA 58.209 34.615 0.00 0.00 0.00 2.57
549 558 8.501580 CATGTTGTACTATATCTCTTGGCATTG 58.498 37.037 0.00 0.00 0.00 2.82
568 1462 2.629137 TGGCATTTTGAGCTCATGTTGT 59.371 40.909 19.04 0.00 0.00 3.32
616 1510 8.997621 TGCCAAAAAGAATACTACTAGTAGTG 57.002 34.615 35.52 20.38 45.25 2.74
620 1514 8.573885 GGTTTTGCCAAAAAGAATACTACTAGT 58.426 33.333 3.79 0.00 35.96 2.57
621 1515 8.793592 AGGTTTTGCCAAAAAGAATACTACTAG 58.206 33.333 3.79 0.00 40.61 2.57
649 1545 4.799564 TTTCCATAGAAAACCATGCACC 57.200 40.909 0.00 0.00 39.05 5.01
719 1641 0.916086 TTCCAATCCGGCCACACTAT 59.084 50.000 2.24 0.00 33.14 2.12
735 1657 5.064834 GTCACTTCCATCGGTCTAATTTTCC 59.935 44.000 0.00 0.00 0.00 3.13
741 1663 1.475280 CGGTCACTTCCATCGGTCTAA 59.525 52.381 0.00 0.00 0.00 2.10
747 1669 0.389817 TTGCTCGGTCACTTCCATCG 60.390 55.000 0.00 0.00 0.00 3.84
779 1701 2.276201 TCCTAAAATGATCACCGCGTG 58.724 47.619 4.92 3.64 34.45 5.34
785 1707 7.539710 GGGTAAACGTTTTCCTAAAATGATCAC 59.460 37.037 28.67 12.78 39.23 3.06
790 1712 6.335471 AGGGGTAAACGTTTTCCTAAAATG 57.665 37.500 28.67 3.41 41.89 2.32
859 1781 0.397816 AATGGGGGAGGTCTCTCTCG 60.398 60.000 0.00 0.00 41.41 4.04
860 1782 1.419381 GAATGGGGGAGGTCTCTCTC 58.581 60.000 0.00 0.00 39.77 3.20
861 1783 0.030603 GGAATGGGGGAGGTCTCTCT 60.031 60.000 0.00 0.00 39.86 3.10
866 1788 0.771755 GTATGGGAATGGGGGAGGTC 59.228 60.000 0.00 0.00 0.00 3.85
960 1935 3.723364 CTTGGATTCTTGCGGCGCG 62.723 63.158 28.09 14.27 0.00 6.86
1765 2760 3.026879 CAGCTCGTAGATGCGCCG 61.027 66.667 4.18 0.00 36.18 6.46
1998 2993 0.041488 CGGCGATGTAGAGGTCGTAC 60.041 60.000 0.00 0.00 39.87 3.67
2061 3056 1.381327 CTCCCTCTACCAGGCGGAA 60.381 63.158 2.43 0.00 41.80 4.30
2103 3098 4.805192 CCAACCAACAAAAGAATCACTGTG 59.195 41.667 0.17 0.17 0.00 3.66
2109 3104 2.403259 CGCCCAACCAACAAAAGAATC 58.597 47.619 0.00 0.00 0.00 2.52
2221 3256 5.422214 TCTTTTTCTCTATCCACCACTCC 57.578 43.478 0.00 0.00 0.00 3.85
2268 3305 2.551287 CCCACCACGTAACCAATCTGAA 60.551 50.000 0.00 0.00 0.00 3.02
2292 3329 4.037565 ACCTCGACCAAAAAGAATCCAAAC 59.962 41.667 0.00 0.00 0.00 2.93
2320 3357 2.019156 GCAACCAGCCCCTAGAATGTC 61.019 57.143 0.00 0.00 37.23 3.06
2321 3358 0.034089 GCAACCAGCCCCTAGAATGT 60.034 55.000 0.00 0.00 37.23 2.71
2322 3359 2.799176 GCAACCAGCCCCTAGAATG 58.201 57.895 0.00 0.00 37.23 2.67
2333 3370 1.213537 CCAGCGAATTGGCAACCAG 59.786 57.895 15.20 0.00 33.81 4.00
2362 3399 5.779806 AGCACTATCAACGAATTGTACAC 57.220 39.130 0.00 0.00 37.11 2.90
2404 3441 7.572759 TGAAAGAATCGTCAATAACAACAGAC 58.427 34.615 0.00 0.00 0.00 3.51
2466 3503 4.452825 CTCAATCATGCAGAGATCCAACT 58.547 43.478 5.05 0.00 0.00 3.16
2468 3505 3.118000 AGCTCAATCATGCAGAGATCCAA 60.118 43.478 11.49 0.00 0.00 3.53
2469 3506 2.438392 AGCTCAATCATGCAGAGATCCA 59.562 45.455 11.49 0.00 0.00 3.41
2470 3507 2.809119 CAGCTCAATCATGCAGAGATCC 59.191 50.000 11.49 0.00 0.00 3.36
2482 3519 5.368256 ACTGAATTTGACACAGCTCAATC 57.632 39.130 0.00 0.00 35.38 2.67
2483 3520 5.300034 TCAACTGAATTTGACACAGCTCAAT 59.700 36.000 0.00 0.00 35.38 2.57
2489 3526 7.166970 CACTCAAATCAACTGAATTTGACACAG 59.833 37.037 7.08 0.00 38.79 3.66
2508 3545 6.114187 ACATACAGTGAGAATCCACTCAAA 57.886 37.500 0.00 0.00 46.34 2.69
2566 3607 1.466167 CATTGGAGCGACAGTTCAAGG 59.534 52.381 0.00 0.00 0.00 3.61
2570 3611 1.795768 TGACATTGGAGCGACAGTTC 58.204 50.000 0.00 0.00 0.00 3.01
2582 3624 7.909121 GCTAAGTTCTTCATCAGATTGACATTG 59.091 37.037 0.00 0.00 0.00 2.82
2642 3688 2.121291 TCCGCAGAATATTGTTGGCA 57.879 45.000 0.00 0.00 0.00 4.92
2652 3698 5.047802 AGTTCAACATTTCAATCCGCAGAAT 60.048 36.000 0.00 0.00 0.00 2.40
2724 3786 1.303561 TGCTGTCACAGGGGAATGC 60.304 57.895 7.00 0.00 31.21 3.56
2738 3800 4.391216 CAGAGTAACAGAGGAATTGTGCTG 59.609 45.833 0.00 0.00 34.65 4.41
2771 3847 4.096984 GGTATTGATTTCCTGCACAAGAGG 59.903 45.833 0.00 0.00 0.00 3.69
2777 3853 3.505680 TGTGTGGTATTGATTTCCTGCAC 59.494 43.478 0.00 0.00 0.00 4.57
2794 3870 1.265095 GTCACATGCCTCTTGTGTGTG 59.735 52.381 11.04 0.00 43.86 3.82
2808 3884 8.306761 AGAAACTTTGAACTTTTTCAGTCACAT 58.693 29.630 0.00 0.00 42.79 3.21
2821 3897 9.371136 GGAATTTTTGAAGAGAAACTTTGAACT 57.629 29.630 0.00 0.00 39.13 3.01
2839 3915 2.978278 TGATTGGGCACAGGGAATTTTT 59.022 40.909 0.00 0.00 0.00 1.94
2948 4034 7.696755 TGACATCCTAAATGATGATTTGTTCG 58.303 34.615 7.93 0.00 43.94 3.95
3053 4139 2.642427 TCATCGGTTGGGATGATTGTG 58.358 47.619 1.35 0.00 45.82 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.