Multiple sequence alignment - TraesCS7A01G197300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G197300 chr7A 100.000 3525 0 0 1 3525 157227553 157231077 0.000000e+00 6510
1 TraesCS7A01G197300 chr7A 83.260 227 24 6 1652 1875 157229310 157229525 2.780000e-46 196
2 TraesCS7A01G197300 chr7D 94.075 1114 40 7 1652 2742 155376910 155378020 0.000000e+00 1668
3 TraesCS7A01G197300 chr7D 87.489 1087 57 34 934 1973 155375973 155377027 0.000000e+00 1181
4 TraesCS7A01G197300 chr7D 94.471 633 23 6 314 942 155374892 155375516 0.000000e+00 965
5 TraesCS7A01G197300 chr7D 87.500 424 28 12 2751 3167 155378067 155378472 1.920000e-127 466
6 TraesCS7A01G197300 chr7D 91.040 346 16 6 3194 3525 155378468 155378812 1.490000e-123 453
7 TraesCS7A01G197300 chr7D 87.387 333 28 6 1652 1973 155376751 155377080 1.550000e-98 370
8 TraesCS7A01G197300 chr7D 81.162 499 52 24 1652 2118 155376857 155377345 2.590000e-96 363
9 TraesCS7A01G197300 chr7D 86.431 339 26 8 1652 1973 155376804 155377139 1.560000e-93 353
10 TraesCS7A01G197300 chr7D 81.356 236 23 8 1652 1878 155377016 155377239 4.680000e-39 172
11 TraesCS7A01G197300 chr3A 92.722 316 10 2 3 317 16183162 16183465 8.980000e-121 444
12 TraesCS7A01G197300 chr3A 91.319 288 10 4 1 282 743704608 743704886 2.570000e-101 379
13 TraesCS7A01G197300 chr2B 92.476 319 11 5 1 316 637823060 637822752 8.980000e-121 444


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G197300 chr7A 157227553 157231077 3524 False 3353.000000 6510 91.630 1 3525 2 chr7A.!!$F1 3524
1 TraesCS7A01G197300 chr7D 155374892 155378812 3920 False 665.666667 1668 87.879 314 3525 9 chr7D.!!$F1 3211

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.030195 TGATGACCTGGATAGCCCCA 60.030 55.0 0.00 0.0 34.52 4.96 F
310 311 0.319083 TCACGCGACTGTTAATGGGT 59.681 50.0 15.93 0.0 0.00 4.51 F
1277 1790 0.384477 CGCTATCTCGTACTGCGTCC 60.384 60.0 0.00 0.0 41.45 4.79 F
1533 2046 0.312416 CCCGCCGATCTCTCTGTAAG 59.688 60.0 0.00 0.0 0.00 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1168 1656 0.102844 TTACGGGAATAACGAGGCCG 59.897 55.0 0.00 0.0 42.50 6.13 R
1517 2030 0.747255 TGGCTTACAGAGAGATCGGC 59.253 55.0 0.00 0.0 0.00 5.54 R
2489 3235 0.025898 TCGTCGTCGTCGTCATCATC 59.974 55.0 11.41 0.0 38.33 2.92 R
2806 3591 0.169009 GCGGAAGGACAAACTGCATC 59.831 55.0 0.00 0.0 36.16 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 3.279875 GGCTAGGGCGGCAAATCG 61.280 66.667 12.47 0.00 39.81 3.34
40 41 3.279875 GCTAGGGCGGCAAATCGG 61.280 66.667 12.47 0.00 0.00 4.18
41 42 2.189521 CTAGGGCGGCAAATCGGT 59.810 61.111 12.47 0.00 0.00 4.69
42 43 1.444250 CTAGGGCGGCAAATCGGTA 59.556 57.895 12.47 0.00 0.00 4.02
43 44 0.600255 CTAGGGCGGCAAATCGGTAG 60.600 60.000 12.47 0.00 0.00 3.18
44 45 1.044231 TAGGGCGGCAAATCGGTAGA 61.044 55.000 12.47 0.00 0.00 2.59
45 46 1.887707 GGGCGGCAAATCGGTAGAG 60.888 63.158 12.47 0.00 0.00 2.43
46 47 1.153429 GGCGGCAAATCGGTAGAGT 60.153 57.895 3.07 0.00 0.00 3.24
47 48 1.429148 GGCGGCAAATCGGTAGAGTG 61.429 60.000 3.07 0.00 0.00 3.51
48 49 0.459585 GCGGCAAATCGGTAGAGTGA 60.460 55.000 0.00 0.00 0.00 3.41
49 50 1.560923 CGGCAAATCGGTAGAGTGAG 58.439 55.000 0.00 0.00 0.00 3.51
50 51 1.802880 CGGCAAATCGGTAGAGTGAGG 60.803 57.143 0.00 0.00 0.00 3.86
51 52 1.291132 GCAAATCGGTAGAGTGAGGC 58.709 55.000 0.00 0.00 0.00 4.70
52 53 1.560923 CAAATCGGTAGAGTGAGGCG 58.439 55.000 0.00 0.00 0.00 5.52
53 54 1.134367 CAAATCGGTAGAGTGAGGCGA 59.866 52.381 0.00 0.00 0.00 5.54
54 55 1.025812 AATCGGTAGAGTGAGGCGAG 58.974 55.000 0.00 0.00 0.00 5.03
55 56 0.820074 ATCGGTAGAGTGAGGCGAGG 60.820 60.000 0.00 0.00 0.00 4.63
56 57 1.451567 CGGTAGAGTGAGGCGAGGA 60.452 63.158 0.00 0.00 0.00 3.71
57 58 1.440938 CGGTAGAGTGAGGCGAGGAG 61.441 65.000 0.00 0.00 0.00 3.69
58 59 1.104577 GGTAGAGTGAGGCGAGGAGG 61.105 65.000 0.00 0.00 0.00 4.30
59 60 0.107116 GTAGAGTGAGGCGAGGAGGA 60.107 60.000 0.00 0.00 0.00 3.71
60 61 0.181587 TAGAGTGAGGCGAGGAGGAG 59.818 60.000 0.00 0.00 0.00 3.69
61 62 2.757917 AGTGAGGCGAGGAGGAGC 60.758 66.667 0.00 0.00 0.00 4.70
71 72 2.759795 GGAGGAGCCTTGCCTGTT 59.240 61.111 0.00 0.00 35.44 3.16
72 73 1.676967 GGAGGAGCCTTGCCTGTTG 60.677 63.158 0.00 0.00 35.44 3.33
73 74 1.376466 GAGGAGCCTTGCCTGTTGA 59.624 57.895 0.00 0.00 35.44 3.18
74 75 0.034670 GAGGAGCCTTGCCTGTTGAT 60.035 55.000 0.00 0.00 35.44 2.57
75 76 0.323178 AGGAGCCTTGCCTGTTGATG 60.323 55.000 0.00 0.00 33.59 3.07
76 77 1.318158 GGAGCCTTGCCTGTTGATGG 61.318 60.000 0.00 0.00 0.00 3.51
83 84 3.499737 CCTGTTGATGGCGGCGTC 61.500 66.667 23.33 23.33 0.00 5.19
84 85 3.853330 CTGTTGATGGCGGCGTCG 61.853 66.667 24.19 4.29 39.81 5.12
87 88 4.812476 TTGATGGCGGCGTCGGAG 62.812 66.667 24.19 0.00 36.79 4.63
89 90 4.814294 GATGGCGGCGTCGGAGTT 62.814 66.667 16.02 0.00 36.79 3.01
111 112 3.319198 GTGCCCAGGAGGAACGGA 61.319 66.667 0.00 0.00 33.06 4.69
112 113 3.319198 TGCCCAGGAGGAACGGAC 61.319 66.667 0.00 0.00 38.24 4.79
113 114 4.452733 GCCCAGGAGGAACGGACG 62.453 72.222 0.00 0.00 38.24 4.79
114 115 2.995574 CCCAGGAGGAACGGACGT 60.996 66.667 0.00 0.00 38.24 4.34
115 116 2.261671 CCAGGAGGAACGGACGTG 59.738 66.667 0.00 0.00 36.89 4.49
116 117 2.261671 CAGGAGGAACGGACGTGG 59.738 66.667 0.00 0.00 0.00 4.94
117 118 3.692406 AGGAGGAACGGACGTGGC 61.692 66.667 0.00 0.00 0.00 5.01
149 150 3.864686 CGGCGGCGATTTGTGGAG 61.865 66.667 29.19 0.00 0.00 3.86
150 151 2.435938 GGCGGCGATTTGTGGAGA 60.436 61.111 12.98 0.00 0.00 3.71
151 152 2.464459 GGCGGCGATTTGTGGAGAG 61.464 63.158 12.98 0.00 0.00 3.20
152 153 1.447838 GCGGCGATTTGTGGAGAGA 60.448 57.895 12.98 0.00 0.00 3.10
153 154 1.424493 GCGGCGATTTGTGGAGAGAG 61.424 60.000 12.98 0.00 0.00 3.20
154 155 0.173481 CGGCGATTTGTGGAGAGAGA 59.827 55.000 0.00 0.00 0.00 3.10
155 156 1.800655 CGGCGATTTGTGGAGAGAGAG 60.801 57.143 0.00 0.00 0.00 3.20
156 157 1.472376 GGCGATTTGTGGAGAGAGAGG 60.472 57.143 0.00 0.00 0.00 3.69
157 158 1.472376 GCGATTTGTGGAGAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
158 159 2.103373 CGATTTGTGGAGAGAGAGGGA 58.897 52.381 0.00 0.00 0.00 4.20
159 160 2.100584 CGATTTGTGGAGAGAGAGGGAG 59.899 54.545 0.00 0.00 0.00 4.30
160 161 2.704190 TTTGTGGAGAGAGAGGGAGT 57.296 50.000 0.00 0.00 0.00 3.85
161 162 2.223803 TTGTGGAGAGAGAGGGAGTC 57.776 55.000 0.00 0.00 0.00 3.36
162 163 0.034960 TGTGGAGAGAGAGGGAGTCG 60.035 60.000 0.00 0.00 0.00 4.18
163 164 0.750182 GTGGAGAGAGAGGGAGTCGG 60.750 65.000 0.00 0.00 0.00 4.79
164 165 1.152839 GGAGAGAGAGGGAGTCGGG 60.153 68.421 0.00 0.00 0.00 5.14
165 166 1.637724 GGAGAGAGAGGGAGTCGGGA 61.638 65.000 0.00 0.00 0.00 5.14
166 167 0.179029 GAGAGAGAGGGAGTCGGGAG 60.179 65.000 0.00 0.00 0.00 4.30
167 168 0.622154 AGAGAGAGGGAGTCGGGAGA 60.622 60.000 0.00 0.00 0.00 3.71
168 169 0.179029 GAGAGAGGGAGTCGGGAGAG 60.179 65.000 0.00 0.00 41.26 3.20
169 170 1.826487 GAGAGGGAGTCGGGAGAGC 60.826 68.421 0.00 0.00 41.26 4.09
170 171 2.043852 GAGGGAGTCGGGAGAGCA 60.044 66.667 0.00 0.00 41.26 4.26
171 172 2.043450 AGGGAGTCGGGAGAGCAG 60.043 66.667 0.00 0.00 41.26 4.24
172 173 3.151022 GGGAGTCGGGAGAGCAGG 61.151 72.222 0.00 0.00 41.26 4.85
173 174 2.043852 GGAGTCGGGAGAGCAGGA 60.044 66.667 0.00 0.00 41.26 3.86
174 175 2.124693 GGAGTCGGGAGAGCAGGAG 61.125 68.421 0.00 0.00 41.26 3.69
175 176 2.043450 AGTCGGGAGAGCAGGAGG 60.043 66.667 0.00 0.00 41.26 4.30
176 177 2.043852 GTCGGGAGAGCAGGAGGA 60.044 66.667 0.00 0.00 41.26 3.71
177 178 2.124693 GTCGGGAGAGCAGGAGGAG 61.125 68.421 0.00 0.00 41.26 3.69
178 179 2.277072 CGGGAGAGCAGGAGGAGA 59.723 66.667 0.00 0.00 0.00 3.71
179 180 1.380515 CGGGAGAGCAGGAGGAGAA 60.381 63.158 0.00 0.00 0.00 2.87
180 181 0.972983 CGGGAGAGCAGGAGGAGAAA 60.973 60.000 0.00 0.00 0.00 2.52
181 182 0.829990 GGGAGAGCAGGAGGAGAAAG 59.170 60.000 0.00 0.00 0.00 2.62
182 183 0.829990 GGAGAGCAGGAGGAGAAAGG 59.170 60.000 0.00 0.00 0.00 3.11
183 184 0.829990 GAGAGCAGGAGGAGAAAGGG 59.170 60.000 0.00 0.00 0.00 3.95
184 185 0.620121 AGAGCAGGAGGAGAAAGGGG 60.620 60.000 0.00 0.00 0.00 4.79
185 186 0.618968 GAGCAGGAGGAGAAAGGGGA 60.619 60.000 0.00 0.00 0.00 4.81
186 187 0.045469 AGCAGGAGGAGAAAGGGGAT 59.955 55.000 0.00 0.00 0.00 3.85
187 188 0.182299 GCAGGAGGAGAAAGGGGATG 59.818 60.000 0.00 0.00 0.00 3.51
188 189 0.842635 CAGGAGGAGAAAGGGGATGG 59.157 60.000 0.00 0.00 0.00 3.51
189 190 0.725133 AGGAGGAGAAAGGGGATGGA 59.275 55.000 0.00 0.00 0.00 3.41
190 191 1.135960 GGAGGAGAAAGGGGATGGAG 58.864 60.000 0.00 0.00 0.00 3.86
191 192 1.135960 GAGGAGAAAGGGGATGGAGG 58.864 60.000 0.00 0.00 0.00 4.30
192 193 0.327964 AGGAGAAAGGGGATGGAGGG 60.328 60.000 0.00 0.00 0.00 4.30
193 194 0.327576 GGAGAAAGGGGATGGAGGGA 60.328 60.000 0.00 0.00 0.00 4.20
194 195 1.135960 GAGAAAGGGGATGGAGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
195 196 0.990818 AGAAAGGGGATGGAGGGAGC 60.991 60.000 0.00 0.00 0.00 4.70
196 197 0.990818 GAAAGGGGATGGAGGGAGCT 60.991 60.000 0.00 0.00 0.00 4.09
197 198 1.284841 AAAGGGGATGGAGGGAGCTG 61.285 60.000 0.00 0.00 0.00 4.24
198 199 3.883549 GGGGATGGAGGGAGCTGC 61.884 72.222 0.00 0.00 0.00 5.25
199 200 3.883549 GGGATGGAGGGAGCTGCC 61.884 72.222 18.04 18.04 0.00 4.85
200 201 2.771762 GGATGGAGGGAGCTGCCT 60.772 66.667 28.97 28.97 36.66 4.75
201 202 1.460305 GGATGGAGGGAGCTGCCTA 60.460 63.158 28.63 13.60 36.66 3.93
202 203 0.839853 GGATGGAGGGAGCTGCCTAT 60.840 60.000 28.63 18.29 36.66 2.57
203 204 0.612744 GATGGAGGGAGCTGCCTATC 59.387 60.000 28.63 22.52 36.66 2.08
204 205 0.193069 ATGGAGGGAGCTGCCTATCT 59.807 55.000 28.63 11.42 36.66 1.98
205 206 0.762082 TGGAGGGAGCTGCCTATCTG 60.762 60.000 28.63 0.00 36.66 2.90
206 207 0.470833 GGAGGGAGCTGCCTATCTGA 60.471 60.000 28.63 0.00 36.66 3.27
207 208 0.968405 GAGGGAGCTGCCTATCTGAG 59.032 60.000 28.63 0.00 36.66 3.35
208 209 0.560193 AGGGAGCTGCCTATCTGAGA 59.440 55.000 27.45 0.00 36.66 3.27
209 210 0.678950 GGGAGCTGCCTATCTGAGAC 59.321 60.000 18.47 0.00 36.66 3.36
210 211 1.703411 GGAGCTGCCTATCTGAGACT 58.297 55.000 0.00 0.00 0.00 3.24
211 212 1.340889 GGAGCTGCCTATCTGAGACTG 59.659 57.143 0.00 0.00 0.00 3.51
212 213 2.031120 GAGCTGCCTATCTGAGACTGT 58.969 52.381 0.00 0.00 0.00 3.55
213 214 1.755959 AGCTGCCTATCTGAGACTGTG 59.244 52.381 0.00 0.00 0.00 3.66
214 215 1.753649 GCTGCCTATCTGAGACTGTGA 59.246 52.381 0.00 0.00 0.00 3.58
215 216 2.364970 GCTGCCTATCTGAGACTGTGAT 59.635 50.000 0.00 0.00 0.00 3.06
216 217 3.552684 GCTGCCTATCTGAGACTGTGATC 60.553 52.174 0.00 0.00 0.00 2.92
217 218 2.620585 TGCCTATCTGAGACTGTGATCG 59.379 50.000 0.00 0.00 0.00 3.69
218 219 2.881513 GCCTATCTGAGACTGTGATCGA 59.118 50.000 0.00 0.00 0.00 3.59
219 220 3.505680 GCCTATCTGAGACTGTGATCGAT 59.494 47.826 0.00 0.00 0.00 3.59
220 221 4.379394 GCCTATCTGAGACTGTGATCGATC 60.379 50.000 18.72 18.72 0.00 3.69
221 222 5.003160 CCTATCTGAGACTGTGATCGATCT 58.997 45.833 25.02 5.26 0.00 2.75
222 223 5.122239 CCTATCTGAGACTGTGATCGATCTC 59.878 48.000 25.02 21.55 38.46 2.75
223 224 4.149511 TCTGAGACTGTGATCGATCTCT 57.850 45.455 25.02 18.76 38.72 3.10
224 225 4.522114 TCTGAGACTGTGATCGATCTCTT 58.478 43.478 25.02 13.14 38.72 2.85
225 226 4.946772 TCTGAGACTGTGATCGATCTCTTT 59.053 41.667 25.02 12.81 38.72 2.52
226 227 5.417266 TCTGAGACTGTGATCGATCTCTTTT 59.583 40.000 25.02 10.55 38.72 2.27
227 228 6.599638 TCTGAGACTGTGATCGATCTCTTTTA 59.400 38.462 25.02 6.08 38.72 1.52
228 229 7.121315 TCTGAGACTGTGATCGATCTCTTTTAA 59.879 37.037 25.02 5.74 38.72 1.52
229 230 7.776107 TGAGACTGTGATCGATCTCTTTTAAT 58.224 34.615 25.02 8.20 38.72 1.40
230 231 8.253810 TGAGACTGTGATCGATCTCTTTTAATT 58.746 33.333 25.02 6.54 38.72 1.40
231 232 9.092876 GAGACTGTGATCGATCTCTTTTAATTT 57.907 33.333 25.02 5.17 35.68 1.82
232 233 9.442047 AGACTGTGATCGATCTCTTTTAATTTT 57.558 29.630 25.02 1.69 0.00 1.82
251 252 3.992943 TTTTTATCTCTCCCTTCGGCA 57.007 42.857 0.00 0.00 0.00 5.69
252 253 2.981859 TTTATCTCTCCCTTCGGCAC 57.018 50.000 0.00 0.00 0.00 5.01
253 254 1.860641 TTATCTCTCCCTTCGGCACA 58.139 50.000 0.00 0.00 0.00 4.57
254 255 1.403814 TATCTCTCCCTTCGGCACAG 58.596 55.000 0.00 0.00 0.00 3.66
255 256 0.616111 ATCTCTCCCTTCGGCACAGT 60.616 55.000 0.00 0.00 0.00 3.55
256 257 0.039180 TCTCTCCCTTCGGCACAGTA 59.961 55.000 0.00 0.00 0.00 2.74
257 258 0.895530 CTCTCCCTTCGGCACAGTAA 59.104 55.000 0.00 0.00 0.00 2.24
258 259 1.275291 CTCTCCCTTCGGCACAGTAAA 59.725 52.381 0.00 0.00 0.00 2.01
259 260 1.275291 TCTCCCTTCGGCACAGTAAAG 59.725 52.381 0.00 0.00 0.00 1.85
260 261 1.002087 CTCCCTTCGGCACAGTAAAGT 59.998 52.381 0.00 0.00 0.00 2.66
261 262 1.156736 CCCTTCGGCACAGTAAAGTG 58.843 55.000 0.00 0.00 42.37 3.16
262 263 1.270625 CCCTTCGGCACAGTAAAGTGA 60.271 52.381 0.00 0.00 42.05 3.41
263 264 2.615493 CCCTTCGGCACAGTAAAGTGAT 60.615 50.000 0.00 0.00 42.05 3.06
264 265 2.416547 CCTTCGGCACAGTAAAGTGATG 59.583 50.000 0.00 0.00 42.05 3.07
265 266 3.325870 CTTCGGCACAGTAAAGTGATGA 58.674 45.455 0.00 0.00 42.05 2.92
266 267 2.683968 TCGGCACAGTAAAGTGATGAC 58.316 47.619 0.00 0.00 42.05 3.06
267 268 1.732259 CGGCACAGTAAAGTGATGACC 59.268 52.381 0.00 0.00 42.05 4.02
268 269 2.612972 CGGCACAGTAAAGTGATGACCT 60.613 50.000 0.00 0.00 42.05 3.85
269 270 2.744202 GGCACAGTAAAGTGATGACCTG 59.256 50.000 0.00 0.00 42.05 4.00
270 271 2.744202 GCACAGTAAAGTGATGACCTGG 59.256 50.000 0.00 0.00 42.05 4.45
271 272 3.557054 GCACAGTAAAGTGATGACCTGGA 60.557 47.826 0.00 0.00 42.05 3.86
272 273 4.836825 CACAGTAAAGTGATGACCTGGAT 58.163 43.478 0.00 0.00 42.05 3.41
273 274 5.626809 GCACAGTAAAGTGATGACCTGGATA 60.627 44.000 0.00 0.00 42.05 2.59
274 275 6.045318 CACAGTAAAGTGATGACCTGGATAG 58.955 44.000 0.00 0.00 42.05 2.08
275 276 5.053145 CAGTAAAGTGATGACCTGGATAGC 58.947 45.833 0.00 0.00 0.00 2.97
276 277 3.567478 AAAGTGATGACCTGGATAGCC 57.433 47.619 0.00 0.00 0.00 3.93
277 278 1.428869 AGTGATGACCTGGATAGCCC 58.571 55.000 0.00 0.00 0.00 5.19
278 279 0.398318 GTGATGACCTGGATAGCCCC 59.602 60.000 0.00 0.00 0.00 5.80
279 280 0.030195 TGATGACCTGGATAGCCCCA 60.030 55.000 0.00 0.00 34.52 4.96
284 285 2.911143 CTGGATAGCCCCAGCGTT 59.089 61.111 0.00 0.00 46.16 4.84
285 286 1.227674 CTGGATAGCCCCAGCGTTC 60.228 63.158 0.00 0.00 46.16 3.95
286 287 2.280186 GGATAGCCCCAGCGTTCG 60.280 66.667 0.00 0.00 46.67 3.95
287 288 2.967615 GATAGCCCCAGCGTTCGC 60.968 66.667 9.24 9.24 46.67 4.70
288 289 3.447025 GATAGCCCCAGCGTTCGCT 62.447 63.158 14.02 14.02 46.67 4.93
289 290 3.447025 ATAGCCCCAGCGTTCGCTC 62.447 63.158 16.80 6.16 46.67 5.03
292 293 2.815647 CCCCAGCGTTCGCTCTTC 60.816 66.667 16.80 0.00 39.76 2.87
293 294 2.048222 CCCAGCGTTCGCTCTTCA 60.048 61.111 16.80 0.00 39.76 3.02
294 295 2.383527 CCCAGCGTTCGCTCTTCAC 61.384 63.158 16.80 0.00 39.76 3.18
295 296 2.720758 CCAGCGTTCGCTCTTCACG 61.721 63.158 16.80 5.01 39.76 4.35
303 304 3.938112 GCTCTTCACGCGACTGTT 58.062 55.556 15.93 0.00 0.00 3.16
304 305 3.102515 GCTCTTCACGCGACTGTTA 57.897 52.632 15.93 0.00 0.00 2.41
305 306 1.415374 GCTCTTCACGCGACTGTTAA 58.585 50.000 15.93 0.00 0.00 2.01
306 307 1.993370 GCTCTTCACGCGACTGTTAAT 59.007 47.619 15.93 0.00 0.00 1.40
307 308 2.222596 GCTCTTCACGCGACTGTTAATG 60.223 50.000 15.93 0.00 0.00 1.90
308 309 2.333926 TCTTCACGCGACTGTTAATGG 58.666 47.619 15.93 0.00 0.00 3.16
309 310 1.393539 CTTCACGCGACTGTTAATGGG 59.606 52.381 15.93 0.00 0.00 4.00
310 311 0.319083 TCACGCGACTGTTAATGGGT 59.681 50.000 15.93 0.00 0.00 4.51
311 312 1.153353 CACGCGACTGTTAATGGGTT 58.847 50.000 15.93 0.00 0.00 4.11
312 313 1.533731 CACGCGACTGTTAATGGGTTT 59.466 47.619 15.93 0.00 0.00 3.27
387 388 6.129035 CGAAAATTAACGACCATGGTTTTTCC 60.129 38.462 28.24 18.12 30.18 3.13
389 390 2.074729 AACGACCATGGTTTTTCCCA 57.925 45.000 20.85 0.00 39.27 4.37
391 392 1.144093 ACGACCATGGTTTTTCCCAGA 59.856 47.619 20.85 0.00 38.07 3.86
452 454 1.446907 CAGTGAATCTGCTGTGTCCC 58.553 55.000 0.00 0.00 37.36 4.46
454 456 2.234661 CAGTGAATCTGCTGTGTCCCTA 59.765 50.000 0.00 0.00 37.36 3.53
455 457 2.906389 AGTGAATCTGCTGTGTCCCTAA 59.094 45.455 0.00 0.00 0.00 2.69
456 458 3.055530 AGTGAATCTGCTGTGTCCCTAAG 60.056 47.826 0.00 0.00 0.00 2.18
464 466 5.130311 TCTGCTGTGTCCCTAAGCATTATTA 59.870 40.000 0.00 0.00 45.35 0.98
489 491 2.354704 GCCCATGTAGTTAGCTGACACA 60.355 50.000 11.65 12.71 0.00 3.72
545 547 1.245732 AGAAAAGCAAGCTGAGCAGG 58.754 50.000 7.39 0.00 0.00 4.85
724 726 1.279527 CGTCGAGCGCTTTGGTGTAA 61.280 55.000 13.26 0.00 0.00 2.41
792 797 1.718757 GCGCTGACCAGGCTAAATGG 61.719 60.000 0.00 0.00 43.87 3.16
793 798 1.718757 CGCTGACCAGGCTAAATGGC 61.719 60.000 0.00 0.00 41.87 4.40
794 799 0.680921 GCTGACCAGGCTAAATGGCA 60.681 55.000 0.00 0.00 41.87 4.92
795 800 1.098050 CTGACCAGGCTAAATGGCAC 58.902 55.000 0.00 0.00 41.87 5.01
902 907 2.654863 GCAGTACAGGGCCAACATAAT 58.345 47.619 6.18 0.00 0.00 1.28
907 912 3.748645 ACAGGGCCAACATAATAACCA 57.251 42.857 6.18 0.00 0.00 3.67
915 920 4.508861 GCCAACATAATAACCACGATACGT 59.491 41.667 0.00 0.00 42.36 3.57
946 1416 2.751806 GTGCATCTTCCTCTTTCCCAAG 59.248 50.000 0.00 0.00 0.00 3.61
982 1453 2.007049 GCGCCTTTTCTCCGATCTTCA 61.007 52.381 0.00 0.00 0.00 3.02
1135 1623 4.503314 GCATGCTTGCCTTCGCCC 62.503 66.667 11.37 0.00 43.38 6.13
1137 1625 3.064324 ATGCTTGCCTTCGCCCAC 61.064 61.111 0.00 0.00 0.00 4.61
1140 1628 4.659172 CTTGCCTTCGCCCACCCA 62.659 66.667 0.00 0.00 0.00 4.51
1141 1629 4.966787 TTGCCTTCGCCCACCCAC 62.967 66.667 0.00 0.00 0.00 4.61
1150 1638 2.281484 CCCACCCACACCGTCTTG 60.281 66.667 0.00 0.00 0.00 3.02
1186 1674 1.735360 CGGCCTCGTTATTCCCGTA 59.265 57.895 0.00 0.00 34.56 4.02
1221 1709 0.856641 CGTCGTTGACCATTCGTGTT 59.143 50.000 0.00 0.00 0.00 3.32
1222 1710 1.259507 CGTCGTTGACCATTCGTGTTT 59.740 47.619 0.00 0.00 0.00 2.83
1223 1711 2.472115 CGTCGTTGACCATTCGTGTTTA 59.528 45.455 0.00 0.00 0.00 2.01
1224 1712 3.122278 CGTCGTTGACCATTCGTGTTTAT 59.878 43.478 0.00 0.00 0.00 1.40
1225 1713 4.391358 GTCGTTGACCATTCGTGTTTATG 58.609 43.478 0.00 0.00 0.00 1.90
1226 1714 3.120477 TCGTTGACCATTCGTGTTTATGC 60.120 43.478 0.00 0.00 0.00 3.14
1247 1735 6.140303 TGCATGCATAGATTTCTCCTTTTC 57.860 37.500 18.46 0.00 0.00 2.29
1260 1748 6.481954 TTCTCCTTTTCTTTATCTTGTCGC 57.518 37.500 0.00 0.00 0.00 5.19
1277 1790 0.384477 CGCTATCTCGTACTGCGTCC 60.384 60.000 0.00 0.00 41.45 4.79
1287 1800 1.463444 GTACTGCGTCCCAATTCACAC 59.537 52.381 0.00 0.00 0.00 3.82
1376 1889 1.473497 TTGCACCACATGGCAGCATT 61.473 50.000 16.55 0.00 45.02 3.56
1378 1891 0.531657 GCACCACATGGCAGCATTTA 59.468 50.000 10.21 0.00 38.79 1.40
1517 2030 4.148825 CAACCTCGAGCTCCCCCG 62.149 72.222 6.99 0.00 0.00 5.73
1527 2040 3.299190 CTCCCCCGCCGATCTCTC 61.299 72.222 0.00 0.00 0.00 3.20
1528 2041 3.801068 CTCCCCCGCCGATCTCTCT 62.801 68.421 0.00 0.00 0.00 3.10
1529 2042 3.610669 CCCCCGCCGATCTCTCTG 61.611 72.222 0.00 0.00 0.00 3.35
1530 2043 2.835431 CCCCGCCGATCTCTCTGT 60.835 66.667 0.00 0.00 0.00 3.41
1531 2044 1.528542 CCCCGCCGATCTCTCTGTA 60.529 63.158 0.00 0.00 0.00 2.74
1532 2045 1.107538 CCCCGCCGATCTCTCTGTAA 61.108 60.000 0.00 0.00 0.00 2.41
1533 2046 0.312416 CCCGCCGATCTCTCTGTAAG 59.688 60.000 0.00 0.00 0.00 2.34
1534 2047 0.318275 CCGCCGATCTCTCTGTAAGC 60.318 60.000 0.00 0.00 0.00 3.09
1535 2048 0.318275 CGCCGATCTCTCTGTAAGCC 60.318 60.000 0.00 0.00 0.00 4.35
1542 2055 4.380973 CGATCTCTCTGTAAGCCACAAGAA 60.381 45.833 0.00 0.00 36.48 2.52
1563 2076 2.159226 ACCTCTACTTTTCCTGCGATCG 60.159 50.000 11.69 11.69 0.00 3.69
1573 2086 1.067060 TCCTGCGATCGAACCATACTG 59.933 52.381 21.57 2.98 0.00 2.74
2177 2921 7.058525 TGTCCGTCTAGACATTTAGGAATAGA 58.941 38.462 22.37 3.61 41.78 1.98
2213 2957 2.548057 TGCTCCAAGTCGATTTTCACAC 59.452 45.455 0.00 0.00 0.00 3.82
2264 3010 7.768120 TGCTTCTTTGTTTTGTGGATTGTTTAT 59.232 29.630 0.00 0.00 0.00 1.40
2274 3020 9.562583 TTTTGTGGATTGTTTATTACTTATCGC 57.437 29.630 0.00 0.00 0.00 4.58
2275 3021 7.254227 TGTGGATTGTTTATTACTTATCGCC 57.746 36.000 0.00 0.00 0.00 5.54
2456 3202 6.328410 TCTTGTGTATGATTCTGATGGAGGAT 59.672 38.462 0.00 0.00 0.00 3.24
2461 3207 8.538701 GTGTATGATTCTGATGGAGGATTCTAT 58.461 37.037 0.00 0.00 0.00 1.98
2491 3237 9.638176 AATGATGATGATGATGATGATGATGAT 57.362 29.630 0.00 0.00 0.00 2.45
2501 3247 4.232221 TGATGATGATGATGATGACGACG 58.768 43.478 0.00 0.00 0.00 5.12
2502 3248 3.988379 TGATGATGATGATGACGACGA 57.012 42.857 0.00 0.00 0.00 4.20
2533 3279 5.525012 CGAAGATGATGAATAGAAAGCCACA 59.475 40.000 0.00 0.00 0.00 4.17
2535 3281 7.507733 AAGATGATGAATAGAAAGCCACATC 57.492 36.000 0.00 0.00 35.96 3.06
2537 3283 6.711194 AGATGATGAATAGAAAGCCACATCAG 59.289 38.462 0.00 0.00 44.12 2.90
2548 3294 2.240667 AGCCACATCAGAGCTGGTAATT 59.759 45.455 0.00 0.00 34.99 1.40
2579 3325 7.860918 TCTCTGATCATTCCTTCATTTTCTG 57.139 36.000 0.00 0.00 0.00 3.02
2580 3326 6.827251 TCTCTGATCATTCCTTCATTTTCTGG 59.173 38.462 0.00 0.00 0.00 3.86
2586 3332 7.601705 TCATTCCTTCATTTTCTGGAAGTTT 57.398 32.000 0.00 0.00 41.20 2.66
2608 3354 2.540101 GTGTTGGTACTCATCGCTATGC 59.460 50.000 0.00 0.00 32.76 3.14
2635 3381 9.995003 TTATGAACATAATTTGCAGTTTCCTTT 57.005 25.926 3.52 0.00 0.00 3.11
2657 3404 9.586435 CCTTTGTTCTTCTAAAAAGTTCACATT 57.414 29.630 0.00 0.00 0.00 2.71
2667 3414 6.391227 AAAAAGTTCACATTGGTAGTCTGG 57.609 37.500 0.00 0.00 0.00 3.86
2672 3419 1.066858 CACATTGGTAGTCTGGTCGCT 60.067 52.381 0.00 0.00 0.00 4.93
2704 3451 8.767478 ATGAAGATAATTTGCAGTTTCCTTTG 57.233 30.769 0.00 0.00 0.00 2.77
2806 3591 6.738114 ACTGGTGTGAACTGTGAATATTTTG 58.262 36.000 0.00 0.00 0.00 2.44
2807 3592 6.545666 ACTGGTGTGAACTGTGAATATTTTGA 59.454 34.615 0.00 0.00 0.00 2.69
2822 3607 7.814107 TGAATATTTTGATGCAGTTTGTCCTTC 59.186 33.333 0.00 0.00 0.00 3.46
2824 3609 1.522668 TGATGCAGTTTGTCCTTCCG 58.477 50.000 0.00 0.00 0.00 4.30
2825 3610 0.169009 GATGCAGTTTGTCCTTCCGC 59.831 55.000 0.00 0.00 0.00 5.54
2833 3618 4.698304 CAGTTTGTCCTTCCGCCTTATTTA 59.302 41.667 0.00 0.00 0.00 1.40
2840 3625 5.181433 GTCCTTCCGCCTTATTTATTCATCC 59.819 44.000 0.00 0.00 0.00 3.51
2841 3626 4.459337 CCTTCCGCCTTATTTATTCATCCC 59.541 45.833 0.00 0.00 0.00 3.85
2842 3627 3.670625 TCCGCCTTATTTATTCATCCCG 58.329 45.455 0.00 0.00 0.00 5.14
2865 3651 7.067251 CCCGAGGAACCATAGAGTTCTATATAC 59.933 44.444 1.52 0.00 44.56 1.47
2867 3653 7.610692 CGAGGAACCATAGAGTTCTATATACCA 59.389 40.741 1.52 0.00 44.56 3.25
2868 3654 8.887264 AGGAACCATAGAGTTCTATATACCAG 57.113 38.462 1.52 0.00 44.56 4.00
2869 3655 7.397761 AGGAACCATAGAGTTCTATATACCAGC 59.602 40.741 1.52 0.00 44.56 4.85
2870 3656 7.397761 GGAACCATAGAGTTCTATATACCAGCT 59.602 40.741 1.52 0.00 44.56 4.24
2871 3657 9.463902 GAACCATAGAGTTCTATATACCAGCTA 57.536 37.037 1.52 0.00 42.37 3.32
2872 3658 9.469097 AACCATAGAGTTCTATATACCAGCTAG 57.531 37.037 1.52 0.00 37.07 3.42
2873 3659 8.616598 ACCATAGAGTTCTATATACCAGCTAGT 58.383 37.037 1.52 0.00 37.07 2.57
2874 3660 9.469097 CCATAGAGTTCTATATACCAGCTAGTT 57.531 37.037 1.52 0.00 37.07 2.24
2877 3663 8.630054 AGAGTTCTATATACCAGCTAGTTCTG 57.370 38.462 0.00 0.00 0.00 3.02
2878 3664 8.221944 AGAGTTCTATATACCAGCTAGTTCTGT 58.778 37.037 0.00 0.00 32.32 3.41
2879 3665 8.770010 AGTTCTATATACCAGCTAGTTCTGTT 57.230 34.615 0.00 0.00 32.32 3.16
2880 3666 9.203163 AGTTCTATATACCAGCTAGTTCTGTTT 57.797 33.333 0.00 0.00 32.32 2.83
2881 3667 9.465985 GTTCTATATACCAGCTAGTTCTGTTTC 57.534 37.037 0.00 0.00 32.32 2.78
2882 3668 8.179509 TCTATATACCAGCTAGTTCTGTTTCC 57.820 38.462 0.00 0.00 32.32 3.13
2883 3669 8.005388 TCTATATACCAGCTAGTTCTGTTTCCT 58.995 37.037 0.00 0.00 32.32 3.36
2884 3670 5.763876 ATACCAGCTAGTTCTGTTTCCTT 57.236 39.130 0.00 0.00 32.32 3.36
2885 3671 4.009370 ACCAGCTAGTTCTGTTTCCTTC 57.991 45.455 0.00 0.00 32.32 3.46
2886 3672 3.391296 ACCAGCTAGTTCTGTTTCCTTCA 59.609 43.478 0.00 0.00 32.32 3.02
2887 3673 4.042187 ACCAGCTAGTTCTGTTTCCTTCAT 59.958 41.667 0.00 0.00 32.32 2.57
2888 3674 4.394300 CCAGCTAGTTCTGTTTCCTTCATG 59.606 45.833 0.00 0.00 32.32 3.07
2889 3675 5.240891 CAGCTAGTTCTGTTTCCTTCATGA 58.759 41.667 0.00 0.00 0.00 3.07
2890 3676 5.350914 CAGCTAGTTCTGTTTCCTTCATGAG 59.649 44.000 0.00 0.00 0.00 2.90
2891 3677 5.012561 AGCTAGTTCTGTTTCCTTCATGAGT 59.987 40.000 0.00 0.00 0.00 3.41
2892 3678 6.211584 AGCTAGTTCTGTTTCCTTCATGAGTA 59.788 38.462 0.00 0.00 0.00 2.59
2974 3762 2.488545 CGTAGTAGTGAGCTGAAGGTGT 59.511 50.000 0.00 0.00 0.00 4.16
2992 3780 9.796120 TGAAGGTGTTGTTTCACTTTATTAAAG 57.204 29.630 13.44 13.44 44.10 1.85
2998 3786 9.179909 TGTTGTTTCACTTTATTAAAGAGGACA 57.820 29.630 20.33 16.43 41.02 4.02
3056 3844 7.573968 AAGGAAAGTGGAGTATCATAAATGC 57.426 36.000 0.00 0.00 36.25 3.56
3067 3855 9.149225 GGAGTATCATAAATGCACTGATTAGAG 57.851 37.037 7.84 0.00 36.25 2.43
3085 3874 0.700564 AGGGGACATGCACAAGTCAT 59.299 50.000 15.15 1.50 36.50 3.06
3114 3903 3.970842 ACAAAAGACCTGGTGTTTGGTA 58.029 40.909 23.71 0.00 32.37 3.25
3139 3929 2.221055 CCAAATATGTAAGTCGCTCGCC 59.779 50.000 0.00 0.00 0.00 5.54
3144 3934 1.141019 GTAAGTCGCTCGCCCATCA 59.859 57.895 0.00 0.00 0.00 3.07
3148 3938 2.108976 TCGCTCGCCCATCATTCC 59.891 61.111 0.00 0.00 0.00 3.01
3151 3941 2.974698 CTCGCCCATCATTCCCGC 60.975 66.667 0.00 0.00 0.00 6.13
3175 3965 2.985847 GCGGCCAGCCACTTCTTT 60.986 61.111 9.78 0.00 40.81 2.52
3176 3966 1.674322 GCGGCCAGCCACTTCTTTA 60.674 57.895 9.78 0.00 40.81 1.85
3177 3967 1.241315 GCGGCCAGCCACTTCTTTAA 61.241 55.000 9.78 0.00 40.81 1.52
3178 3968 1.463674 CGGCCAGCCACTTCTTTAAT 58.536 50.000 9.78 0.00 35.37 1.40
3179 3969 1.133025 CGGCCAGCCACTTCTTTAATG 59.867 52.381 9.78 0.00 35.37 1.90
3180 3970 1.478105 GGCCAGCCACTTCTTTAATGG 59.522 52.381 3.12 0.00 36.51 3.16
3181 3971 1.478105 GCCAGCCACTTCTTTAATGGG 59.522 52.381 0.00 0.00 33.81 4.00
3182 3972 2.102578 CCAGCCACTTCTTTAATGGGG 58.897 52.381 0.00 0.00 33.81 4.96
3183 3973 1.478105 CAGCCACTTCTTTAATGGGGC 59.522 52.381 0.00 0.00 40.18 5.80
3184 3974 1.077005 AGCCACTTCTTTAATGGGGCA 59.923 47.619 8.23 0.00 42.26 5.36
3185 3975 1.899142 GCCACTTCTTTAATGGGGCAA 59.101 47.619 0.13 0.00 39.66 4.52
3186 3976 2.353704 GCCACTTCTTTAATGGGGCAAC 60.354 50.000 0.13 0.00 39.66 4.17
3252 4042 4.154918 CACTTCGCCTATGCTTTCTTTTCT 59.845 41.667 0.00 0.00 34.43 2.52
3256 4046 4.082787 TCGCCTATGCTTTCTTTTCTTTGG 60.083 41.667 0.00 0.00 34.43 3.28
3283 4073 8.959705 ATAATAAAGCTGGTCTGTTAGGTTAC 57.040 34.615 0.00 0.00 33.89 2.50
3284 4074 3.314541 AAGCTGGTCTGTTAGGTTACG 57.685 47.619 0.00 0.00 33.30 3.18
3286 4076 2.895404 AGCTGGTCTGTTAGGTTACGAA 59.105 45.455 0.00 0.00 0.00 3.85
3287 4077 3.514309 AGCTGGTCTGTTAGGTTACGAAT 59.486 43.478 0.00 0.00 0.00 3.34
3289 4079 5.363005 AGCTGGTCTGTTAGGTTACGAATAT 59.637 40.000 0.00 0.00 0.00 1.28
3309 4102 0.106521 CAGTTTTGTTTGGCCTGGGG 59.893 55.000 3.32 0.00 0.00 4.96
3332 4125 2.785477 CTGTTTTGTCTTGCTTGCTTCG 59.215 45.455 0.00 0.00 0.00 3.79
3428 4221 5.171695 GCGATTTCTAGCACGAAACTAGTAG 59.828 44.000 0.00 0.00 38.60 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.473520 CTGCTGTACGCCCCCAGG 62.474 72.222 7.13 0.00 38.05 4.45
21 22 3.279875 GATTTGCCGCCCTAGCCG 61.280 66.667 0.00 0.00 34.57 5.52
22 23 3.279875 CGATTTGCCGCCCTAGCC 61.280 66.667 0.00 0.00 34.57 3.93
23 24 2.653953 TACCGATTTGCCGCCCTAGC 62.654 60.000 0.00 0.00 0.00 3.42
24 25 0.600255 CTACCGATTTGCCGCCCTAG 60.600 60.000 0.00 0.00 0.00 3.02
25 26 1.044231 TCTACCGATTTGCCGCCCTA 61.044 55.000 0.00 0.00 0.00 3.53
26 27 2.189521 CTACCGATTTGCCGCCCT 59.810 61.111 0.00 0.00 0.00 5.19
27 28 1.887707 CTCTACCGATTTGCCGCCC 60.888 63.158 0.00 0.00 0.00 6.13
28 29 1.153429 ACTCTACCGATTTGCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
29 30 0.459585 TCACTCTACCGATTTGCCGC 60.460 55.000 0.00 0.00 0.00 6.53
30 31 1.560923 CTCACTCTACCGATTTGCCG 58.439 55.000 0.00 0.00 0.00 5.69
31 32 1.941325 CCTCACTCTACCGATTTGCC 58.059 55.000 0.00 0.00 0.00 4.52
32 33 1.291132 GCCTCACTCTACCGATTTGC 58.709 55.000 0.00 0.00 0.00 3.68
33 34 1.134367 TCGCCTCACTCTACCGATTTG 59.866 52.381 0.00 0.00 0.00 2.32
34 35 1.405821 CTCGCCTCACTCTACCGATTT 59.594 52.381 0.00 0.00 0.00 2.17
35 36 1.025812 CTCGCCTCACTCTACCGATT 58.974 55.000 0.00 0.00 0.00 3.34
36 37 0.820074 CCTCGCCTCACTCTACCGAT 60.820 60.000 0.00 0.00 0.00 4.18
37 38 1.451567 CCTCGCCTCACTCTACCGA 60.452 63.158 0.00 0.00 0.00 4.69
38 39 1.440938 CTCCTCGCCTCACTCTACCG 61.441 65.000 0.00 0.00 0.00 4.02
39 40 1.104577 CCTCCTCGCCTCACTCTACC 61.105 65.000 0.00 0.00 0.00 3.18
40 41 0.107116 TCCTCCTCGCCTCACTCTAC 60.107 60.000 0.00 0.00 0.00 2.59
41 42 0.181587 CTCCTCCTCGCCTCACTCTA 59.818 60.000 0.00 0.00 0.00 2.43
42 43 1.077068 CTCCTCCTCGCCTCACTCT 60.077 63.158 0.00 0.00 0.00 3.24
43 44 2.781158 GCTCCTCCTCGCCTCACTC 61.781 68.421 0.00 0.00 0.00 3.51
44 45 2.757917 GCTCCTCCTCGCCTCACT 60.758 66.667 0.00 0.00 0.00 3.41
45 46 3.844090 GGCTCCTCCTCGCCTCAC 61.844 72.222 0.00 0.00 42.98 3.51
49 50 4.847444 GCAAGGCTCCTCCTCGCC 62.847 72.222 0.00 0.00 46.94 5.54
50 51 4.847444 GGCAAGGCTCCTCCTCGC 62.847 72.222 0.00 0.00 46.94 5.03
51 52 3.080121 AGGCAAGGCTCCTCCTCG 61.080 66.667 0.00 0.00 46.94 4.63
52 53 1.846712 AACAGGCAAGGCTCCTCCTC 61.847 60.000 0.00 0.00 46.94 3.71
54 55 1.676967 CAACAGGCAAGGCTCCTCC 60.677 63.158 0.00 0.00 0.00 4.30
55 56 0.034670 ATCAACAGGCAAGGCTCCTC 60.035 55.000 0.00 0.00 0.00 3.71
56 57 0.323178 CATCAACAGGCAAGGCTCCT 60.323 55.000 0.00 0.00 0.00 3.69
57 58 1.318158 CCATCAACAGGCAAGGCTCC 61.318 60.000 0.00 0.00 0.00 4.70
58 59 2.187073 CCATCAACAGGCAAGGCTC 58.813 57.895 0.00 0.00 0.00 4.70
59 60 4.428845 CCATCAACAGGCAAGGCT 57.571 55.556 0.00 0.00 0.00 4.58
66 67 3.499737 GACGCCGCCATCAACAGG 61.500 66.667 0.00 0.00 0.00 4.00
67 68 3.853330 CGACGCCGCCATCAACAG 61.853 66.667 0.00 0.00 0.00 3.16
70 71 4.812476 CTCCGACGCCGCCATCAA 62.812 66.667 0.00 0.00 0.00 2.57
72 73 4.814294 AACTCCGACGCCGCCATC 62.814 66.667 0.00 0.00 0.00 3.51
92 93 4.760047 CGTTCCTCCTGGGCACGG 62.760 72.222 0.00 0.00 37.03 4.94
93 94 4.760047 CCGTTCCTCCTGGGCACG 62.760 72.222 0.00 0.32 38.96 5.34
94 95 3.319198 TCCGTTCCTCCTGGGCAC 61.319 66.667 0.00 0.00 34.39 5.01
95 96 3.319198 GTCCGTTCCTCCTGGGCA 61.319 66.667 0.00 0.00 34.39 5.36
96 97 4.452733 CGTCCGTTCCTCCTGGGC 62.453 72.222 0.00 0.00 34.39 5.36
97 98 2.995574 ACGTCCGTTCCTCCTGGG 60.996 66.667 0.00 0.00 0.00 4.45
98 99 2.261671 CACGTCCGTTCCTCCTGG 59.738 66.667 0.00 0.00 0.00 4.45
99 100 2.261671 CCACGTCCGTTCCTCCTG 59.738 66.667 0.00 0.00 0.00 3.86
100 101 3.692406 GCCACGTCCGTTCCTCCT 61.692 66.667 0.00 0.00 0.00 3.69
132 133 3.864686 CTCCACAAATCGCCGCCG 61.865 66.667 0.00 0.00 0.00 6.46
133 134 2.435938 TCTCCACAAATCGCCGCC 60.436 61.111 0.00 0.00 0.00 6.13
134 135 1.424493 CTCTCTCCACAAATCGCCGC 61.424 60.000 0.00 0.00 0.00 6.53
135 136 0.173481 TCTCTCTCCACAAATCGCCG 59.827 55.000 0.00 0.00 0.00 6.46
136 137 1.472376 CCTCTCTCTCCACAAATCGCC 60.472 57.143 0.00 0.00 0.00 5.54
137 138 1.472376 CCCTCTCTCTCCACAAATCGC 60.472 57.143 0.00 0.00 0.00 4.58
138 139 2.100584 CTCCCTCTCTCTCCACAAATCG 59.899 54.545 0.00 0.00 0.00 3.34
139 140 3.103742 ACTCCCTCTCTCTCCACAAATC 58.896 50.000 0.00 0.00 0.00 2.17
140 141 3.103742 GACTCCCTCTCTCTCCACAAAT 58.896 50.000 0.00 0.00 0.00 2.32
141 142 2.530701 GACTCCCTCTCTCTCCACAAA 58.469 52.381 0.00 0.00 0.00 2.83
142 143 1.614583 CGACTCCCTCTCTCTCCACAA 60.615 57.143 0.00 0.00 0.00 3.33
143 144 0.034960 CGACTCCCTCTCTCTCCACA 60.035 60.000 0.00 0.00 0.00 4.17
144 145 0.750182 CCGACTCCCTCTCTCTCCAC 60.750 65.000 0.00 0.00 0.00 4.02
145 146 1.610327 CCGACTCCCTCTCTCTCCA 59.390 63.158 0.00 0.00 0.00 3.86
146 147 1.152839 CCCGACTCCCTCTCTCTCC 60.153 68.421 0.00 0.00 0.00 3.71
147 148 0.179029 CTCCCGACTCCCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
148 149 0.622154 TCTCCCGACTCCCTCTCTCT 60.622 60.000 0.00 0.00 0.00 3.10
149 150 0.179029 CTCTCCCGACTCCCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
150 151 1.919771 CTCTCCCGACTCCCTCTCT 59.080 63.158 0.00 0.00 0.00 3.10
151 152 1.826487 GCTCTCCCGACTCCCTCTC 60.826 68.421 0.00 0.00 0.00 3.20
152 153 2.277404 GCTCTCCCGACTCCCTCT 59.723 66.667 0.00 0.00 0.00 3.69
153 154 2.043852 TGCTCTCCCGACTCCCTC 60.044 66.667 0.00 0.00 0.00 4.30
154 155 2.043450 CTGCTCTCCCGACTCCCT 60.043 66.667 0.00 0.00 0.00 4.20
155 156 3.151022 CCTGCTCTCCCGACTCCC 61.151 72.222 0.00 0.00 0.00 4.30
156 157 2.043852 TCCTGCTCTCCCGACTCC 60.044 66.667 0.00 0.00 0.00 3.85
157 158 2.124693 CCTCCTGCTCTCCCGACTC 61.125 68.421 0.00 0.00 0.00 3.36
158 159 2.043450 CCTCCTGCTCTCCCGACT 60.043 66.667 0.00 0.00 0.00 4.18
159 160 2.043852 TCCTCCTGCTCTCCCGAC 60.044 66.667 0.00 0.00 0.00 4.79
160 161 1.864263 TTCTCCTCCTGCTCTCCCGA 61.864 60.000 0.00 0.00 0.00 5.14
161 162 0.972983 TTTCTCCTCCTGCTCTCCCG 60.973 60.000 0.00 0.00 0.00 5.14
162 163 0.829990 CTTTCTCCTCCTGCTCTCCC 59.170 60.000 0.00 0.00 0.00 4.30
163 164 0.829990 CCTTTCTCCTCCTGCTCTCC 59.170 60.000 0.00 0.00 0.00 3.71
164 165 0.829990 CCCTTTCTCCTCCTGCTCTC 59.170 60.000 0.00 0.00 0.00 3.20
165 166 0.620121 CCCCTTTCTCCTCCTGCTCT 60.620 60.000 0.00 0.00 0.00 4.09
166 167 0.618968 TCCCCTTTCTCCTCCTGCTC 60.619 60.000 0.00 0.00 0.00 4.26
167 168 0.045469 ATCCCCTTTCTCCTCCTGCT 59.955 55.000 0.00 0.00 0.00 4.24
168 169 0.182299 CATCCCCTTTCTCCTCCTGC 59.818 60.000 0.00 0.00 0.00 4.85
169 170 0.842635 CCATCCCCTTTCTCCTCCTG 59.157 60.000 0.00 0.00 0.00 3.86
170 171 0.725133 TCCATCCCCTTTCTCCTCCT 59.275 55.000 0.00 0.00 0.00 3.69
171 172 1.135960 CTCCATCCCCTTTCTCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
172 173 1.135960 CCTCCATCCCCTTTCTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
173 174 0.327964 CCCTCCATCCCCTTTCTCCT 60.328 60.000 0.00 0.00 0.00 3.69
174 175 0.327576 TCCCTCCATCCCCTTTCTCC 60.328 60.000 0.00 0.00 0.00 3.71
175 176 1.135960 CTCCCTCCATCCCCTTTCTC 58.864 60.000 0.00 0.00 0.00 2.87
176 177 0.990818 GCTCCCTCCATCCCCTTTCT 60.991 60.000 0.00 0.00 0.00 2.52
177 178 0.990818 AGCTCCCTCCATCCCCTTTC 60.991 60.000 0.00 0.00 0.00 2.62
178 179 1.085605 AGCTCCCTCCATCCCCTTT 59.914 57.895 0.00 0.00 0.00 3.11
179 180 1.695597 CAGCTCCCTCCATCCCCTT 60.696 63.158 0.00 0.00 0.00 3.95
180 181 2.040043 CAGCTCCCTCCATCCCCT 60.040 66.667 0.00 0.00 0.00 4.79
181 182 3.883549 GCAGCTCCCTCCATCCCC 61.884 72.222 0.00 0.00 0.00 4.81
182 183 2.972589 TAGGCAGCTCCCTCCATCCC 62.973 65.000 0.00 0.00 36.41 3.85
183 184 0.839853 ATAGGCAGCTCCCTCCATCC 60.840 60.000 0.00 0.00 36.41 3.51
184 185 0.612744 GATAGGCAGCTCCCTCCATC 59.387 60.000 0.00 0.00 36.41 3.51
185 186 0.193069 AGATAGGCAGCTCCCTCCAT 59.807 55.000 0.00 0.00 36.41 3.41
186 187 0.762082 CAGATAGGCAGCTCCCTCCA 60.762 60.000 0.00 0.00 36.41 3.86
187 188 0.470833 TCAGATAGGCAGCTCCCTCC 60.471 60.000 0.00 0.00 36.41 4.30
188 189 0.968405 CTCAGATAGGCAGCTCCCTC 59.032 60.000 0.00 0.00 36.41 4.30
189 190 0.560193 TCTCAGATAGGCAGCTCCCT 59.440 55.000 0.00 0.00 39.05 4.20
190 191 0.678950 GTCTCAGATAGGCAGCTCCC 59.321 60.000 0.00 0.00 34.51 4.30
191 192 1.340889 CAGTCTCAGATAGGCAGCTCC 59.659 57.143 0.00 0.00 29.52 4.70
192 193 2.031120 ACAGTCTCAGATAGGCAGCTC 58.969 52.381 0.00 0.00 29.52 4.09
193 194 1.755959 CACAGTCTCAGATAGGCAGCT 59.244 52.381 0.00 0.00 29.52 4.24
194 195 1.753649 TCACAGTCTCAGATAGGCAGC 59.246 52.381 0.00 0.00 29.52 5.25
195 196 3.304592 CGATCACAGTCTCAGATAGGCAG 60.305 52.174 0.00 0.00 29.52 4.85
196 197 2.620585 CGATCACAGTCTCAGATAGGCA 59.379 50.000 0.00 0.00 29.52 4.75
197 198 2.881513 TCGATCACAGTCTCAGATAGGC 59.118 50.000 0.00 0.00 0.00 3.93
198 199 5.003160 AGATCGATCACAGTCTCAGATAGG 58.997 45.833 26.47 0.00 0.00 2.57
199 200 5.934043 AGAGATCGATCACAGTCTCAGATAG 59.066 44.000 26.47 0.00 39.57 2.08
200 201 5.863965 AGAGATCGATCACAGTCTCAGATA 58.136 41.667 26.47 0.00 39.57 1.98
201 202 4.717877 AGAGATCGATCACAGTCTCAGAT 58.282 43.478 26.47 1.56 39.57 2.90
202 203 4.149511 AGAGATCGATCACAGTCTCAGA 57.850 45.455 26.47 0.00 39.57 3.27
203 204 4.898829 AAGAGATCGATCACAGTCTCAG 57.101 45.455 26.47 0.00 39.57 3.35
204 205 5.651387 AAAAGAGATCGATCACAGTCTCA 57.349 39.130 26.47 0.00 39.57 3.27
205 206 8.641499 AATTAAAAGAGATCGATCACAGTCTC 57.359 34.615 26.47 14.88 37.86 3.36
206 207 9.442047 AAAATTAAAAGAGATCGATCACAGTCT 57.558 29.630 26.47 17.06 0.00 3.24
244 245 3.123621 GTCATCACTTTACTGTGCCGAAG 59.876 47.826 0.00 0.00 37.81 3.79
245 246 3.064207 GTCATCACTTTACTGTGCCGAA 58.936 45.455 0.00 0.00 37.81 4.30
246 247 2.611971 GGTCATCACTTTACTGTGCCGA 60.612 50.000 0.00 0.00 37.81 5.54
247 248 1.732259 GGTCATCACTTTACTGTGCCG 59.268 52.381 0.00 0.00 37.81 5.69
248 249 2.744202 CAGGTCATCACTTTACTGTGCC 59.256 50.000 0.00 0.00 37.81 5.01
249 250 2.744202 CCAGGTCATCACTTTACTGTGC 59.256 50.000 0.00 0.00 37.81 4.57
250 251 4.271696 TCCAGGTCATCACTTTACTGTG 57.728 45.455 0.00 0.00 39.15 3.66
251 252 5.395768 GCTATCCAGGTCATCACTTTACTGT 60.396 44.000 0.00 0.00 0.00 3.55
252 253 5.053145 GCTATCCAGGTCATCACTTTACTG 58.947 45.833 0.00 0.00 0.00 2.74
253 254 4.101741 GGCTATCCAGGTCATCACTTTACT 59.898 45.833 0.00 0.00 0.00 2.24
254 255 4.381411 GGCTATCCAGGTCATCACTTTAC 58.619 47.826 0.00 0.00 0.00 2.01
255 256 3.391296 GGGCTATCCAGGTCATCACTTTA 59.609 47.826 0.00 0.00 35.00 1.85
256 257 2.173569 GGGCTATCCAGGTCATCACTTT 59.826 50.000 0.00 0.00 35.00 2.66
257 258 1.771255 GGGCTATCCAGGTCATCACTT 59.229 52.381 0.00 0.00 35.00 3.16
258 259 1.428869 GGGCTATCCAGGTCATCACT 58.571 55.000 0.00 0.00 35.00 3.41
259 260 0.398318 GGGGCTATCCAGGTCATCAC 59.602 60.000 0.00 0.00 37.22 3.06
260 261 0.030195 TGGGGCTATCCAGGTCATCA 60.030 55.000 0.00 0.00 37.22 3.07
261 262 2.854253 TGGGGCTATCCAGGTCATC 58.146 57.895 0.00 0.00 37.22 2.92
268 269 2.908015 GAACGCTGGGGCTATCCA 59.092 61.111 0.00 0.00 37.22 3.41
269 270 2.280186 CGAACGCTGGGGCTATCC 60.280 66.667 0.00 0.00 36.09 2.59
270 271 2.967615 GCGAACGCTGGGGCTATC 60.968 66.667 11.97 0.00 38.26 2.08
286 287 1.415374 TTAACAGTCGCGTGAAGAGC 58.585 50.000 5.77 0.00 0.00 4.09
287 288 2.345641 CCATTAACAGTCGCGTGAAGAG 59.654 50.000 5.77 0.00 0.00 2.85
288 289 2.333926 CCATTAACAGTCGCGTGAAGA 58.666 47.619 5.77 0.00 0.00 2.87
289 290 1.393539 CCCATTAACAGTCGCGTGAAG 59.606 52.381 5.77 0.00 0.00 3.02
290 291 1.270412 ACCCATTAACAGTCGCGTGAA 60.270 47.619 5.77 0.00 0.00 3.18
291 292 0.319083 ACCCATTAACAGTCGCGTGA 59.681 50.000 5.77 0.00 0.00 4.35
292 293 1.153353 AACCCATTAACAGTCGCGTG 58.847 50.000 5.77 0.00 0.00 5.34
293 294 1.886886 AAACCCATTAACAGTCGCGT 58.113 45.000 5.77 0.00 0.00 6.01
294 295 4.609691 ATTAAACCCATTAACAGTCGCG 57.390 40.909 0.00 0.00 36.35 5.87
295 296 5.705902 ACAATTAAACCCATTAACAGTCGC 58.294 37.500 0.00 0.00 36.35 5.19
296 297 6.904498 TGACAATTAAACCCATTAACAGTCG 58.096 36.000 0.00 0.00 40.26 4.18
297 298 8.519526 TGATGACAATTAAACCCATTAACAGTC 58.480 33.333 0.00 0.00 39.12 3.51
298 299 8.415950 TGATGACAATTAAACCCATTAACAGT 57.584 30.769 0.00 0.00 36.35 3.55
299 300 8.739039 TCTGATGACAATTAAACCCATTAACAG 58.261 33.333 0.00 0.00 36.35 3.16
300 301 8.519526 GTCTGATGACAATTAAACCCATTAACA 58.480 33.333 0.00 0.00 42.48 2.41
301 302 7.973944 GGTCTGATGACAATTAAACCCATTAAC 59.026 37.037 0.00 0.00 44.61 2.01
302 303 7.148154 CGGTCTGATGACAATTAAACCCATTAA 60.148 37.037 0.00 0.00 44.61 1.40
303 304 6.317642 CGGTCTGATGACAATTAAACCCATTA 59.682 38.462 0.00 0.00 44.61 1.90
304 305 5.125417 CGGTCTGATGACAATTAAACCCATT 59.875 40.000 0.00 0.00 44.61 3.16
305 306 4.640201 CGGTCTGATGACAATTAAACCCAT 59.360 41.667 0.00 0.00 44.61 4.00
306 307 4.006989 CGGTCTGATGACAATTAAACCCA 58.993 43.478 0.00 0.00 44.61 4.51
307 308 4.007659 ACGGTCTGATGACAATTAAACCC 58.992 43.478 0.00 0.00 44.61 4.11
308 309 4.671766 GCACGGTCTGATGACAATTAAACC 60.672 45.833 0.00 0.00 44.61 3.27
309 310 4.403453 GCACGGTCTGATGACAATTAAAC 58.597 43.478 0.00 0.00 44.61 2.01
310 311 3.124466 CGCACGGTCTGATGACAATTAAA 59.876 43.478 0.00 0.00 44.61 1.52
311 312 2.670905 CGCACGGTCTGATGACAATTAA 59.329 45.455 0.00 0.00 44.61 1.40
312 313 2.267426 CGCACGGTCTGATGACAATTA 58.733 47.619 0.00 0.00 44.61 1.40
444 446 5.760253 CAGGTAATAATGCTTAGGGACACAG 59.240 44.000 0.00 0.00 0.00 3.66
452 454 5.072741 ACATGGGCAGGTAATAATGCTTAG 58.927 41.667 0.00 0.00 42.19 2.18
454 456 3.914771 ACATGGGCAGGTAATAATGCTT 58.085 40.909 0.00 0.00 42.19 3.91
455 457 3.600448 ACATGGGCAGGTAATAATGCT 57.400 42.857 0.00 0.00 42.19 3.79
456 458 4.398319 ACTACATGGGCAGGTAATAATGC 58.602 43.478 0.00 0.00 41.80 3.56
464 466 1.210478 CAGCTAACTACATGGGCAGGT 59.790 52.381 0.00 0.00 0.00 4.00
489 491 1.459592 GTTTGAGTAGCACACGCGATT 59.540 47.619 15.93 0.00 45.49 3.34
551 553 3.421844 GAGGCACCTGGTTAGACATTTT 58.578 45.455 0.00 0.00 0.00 1.82
556 558 1.448013 GCGAGGCACCTGGTTAGAC 60.448 63.158 0.00 0.00 0.00 2.59
632 634 3.462678 GAGGGAGAGGGGCGACAC 61.463 72.222 0.00 0.00 0.00 3.67
637 639 4.475135 GCGTTGAGGGAGAGGGGC 62.475 72.222 0.00 0.00 0.00 5.80
718 720 9.794685 GTAGGAGTAGTAACAACTAATTACACC 57.205 37.037 0.00 0.00 35.39 4.16
724 726 7.944729 TTCGGTAGGAGTAGTAACAACTAAT 57.055 36.000 0.00 0.00 0.00 1.73
792 797 0.527385 ACACACCACAATTTGCGTGC 60.527 50.000 14.08 0.00 32.76 5.34
793 798 1.198767 CACACACCACAATTTGCGTG 58.801 50.000 13.05 13.05 34.69 5.34
794 799 0.814457 ACACACACCACAATTTGCGT 59.186 45.000 0.00 0.00 0.00 5.24
795 800 1.198767 CACACACACCACAATTTGCG 58.801 50.000 0.00 0.00 0.00 4.85
902 907 4.272748 CAGATCAGAGACGTATCGTGGTTA 59.727 45.833 4.25 0.00 41.37 2.85
907 912 2.032302 GCACAGATCAGAGACGTATCGT 59.968 50.000 4.25 0.00 45.10 3.73
915 920 3.372897 AGGAAGATGCACAGATCAGAGA 58.627 45.455 0.00 0.00 0.00 3.10
1135 1623 2.978010 GCCAAGACGGTGTGGGTG 60.978 66.667 0.09 0.00 36.97 4.61
1168 1656 0.102844 TTACGGGAATAACGAGGCCG 59.897 55.000 0.00 0.00 42.50 6.13
1221 1709 7.828508 AAAGGAGAAATCTATGCATGCATAA 57.171 32.000 33.71 25.45 38.30 1.90
1222 1710 7.722728 AGAAAAGGAGAAATCTATGCATGCATA 59.277 33.333 32.64 32.64 37.82 3.14
1223 1711 6.550108 AGAAAAGGAGAAATCTATGCATGCAT 59.450 34.615 33.92 33.92 40.19 3.96
1224 1712 5.889853 AGAAAAGGAGAAATCTATGCATGCA 59.110 36.000 25.04 25.04 0.00 3.96
1225 1713 6.388435 AGAAAAGGAGAAATCTATGCATGC 57.612 37.500 11.82 11.82 0.00 4.06
1247 1735 6.575572 CAGTACGAGATAGCGACAAGATAAAG 59.424 42.308 0.00 0.00 34.83 1.85
1260 1748 1.306148 TGGGACGCAGTACGAGATAG 58.694 55.000 0.00 0.00 46.96 2.08
1277 1790 2.635443 GGCCCCACGTGTGAATTGG 61.635 63.158 15.65 7.05 0.00 3.16
1376 1889 1.996898 CGCCTGATGTGTACGCTTTAA 59.003 47.619 8.10 0.00 0.00 1.52
1378 1891 1.019278 CCGCCTGATGTGTACGCTTT 61.019 55.000 8.10 0.00 0.00 3.51
1517 2030 0.747255 TGGCTTACAGAGAGATCGGC 59.253 55.000 0.00 0.00 0.00 5.54
1518 2031 1.751351 TGTGGCTTACAGAGAGATCGG 59.249 52.381 0.00 0.00 33.42 4.18
1519 2032 3.129462 TCTTGTGGCTTACAGAGAGATCG 59.871 47.826 0.00 0.00 41.10 3.69
1520 2033 4.727507 TCTTGTGGCTTACAGAGAGATC 57.272 45.455 0.00 0.00 41.10 2.75
1521 2034 4.323104 GGTTCTTGTGGCTTACAGAGAGAT 60.323 45.833 0.00 0.00 41.10 2.75
1522 2035 3.006967 GGTTCTTGTGGCTTACAGAGAGA 59.993 47.826 0.00 0.00 41.10 3.10
1523 2036 3.007398 AGGTTCTTGTGGCTTACAGAGAG 59.993 47.826 0.00 0.00 41.10 3.20
1524 2037 2.972713 AGGTTCTTGTGGCTTACAGAGA 59.027 45.455 0.00 0.00 41.10 3.10
1525 2038 3.007398 AGAGGTTCTTGTGGCTTACAGAG 59.993 47.826 0.00 0.00 41.10 3.35
1526 2039 2.972713 AGAGGTTCTTGTGGCTTACAGA 59.027 45.455 0.00 0.00 41.10 3.41
1527 2040 3.409026 AGAGGTTCTTGTGGCTTACAG 57.591 47.619 0.00 0.00 41.10 2.74
1528 2041 3.901844 AGTAGAGGTTCTTGTGGCTTACA 59.098 43.478 0.00 0.00 37.56 2.41
1529 2042 4.538746 AGTAGAGGTTCTTGTGGCTTAC 57.461 45.455 0.00 0.00 0.00 2.34
1530 2043 5.562298 AAAGTAGAGGTTCTTGTGGCTTA 57.438 39.130 0.00 0.00 0.00 3.09
1531 2044 4.439253 AAAGTAGAGGTTCTTGTGGCTT 57.561 40.909 0.00 0.00 0.00 4.35
1532 2045 4.390264 GAAAAGTAGAGGTTCTTGTGGCT 58.610 43.478 0.00 0.00 0.00 4.75
1533 2046 3.502595 GGAAAAGTAGAGGTTCTTGTGGC 59.497 47.826 0.00 0.00 0.00 5.01
1534 2047 4.757149 CAGGAAAAGTAGAGGTTCTTGTGG 59.243 45.833 0.00 0.00 0.00 4.17
1535 2048 4.214332 GCAGGAAAAGTAGAGGTTCTTGTG 59.786 45.833 0.00 0.00 32.58 3.33
1542 2055 2.159226 CGATCGCAGGAAAAGTAGAGGT 60.159 50.000 0.26 0.00 0.00 3.85
1573 2086 2.457366 AGCACACAACCTGTAGTAGC 57.543 50.000 0.00 0.00 0.00 3.58
2177 2921 4.256983 TGGAGCATCTATATCCGGATCT 57.743 45.455 23.08 14.56 35.78 2.75
2213 2957 6.166982 AGAAATTAGGAGAGAACCGTTTCAG 58.833 40.000 0.00 0.00 35.42 3.02
2264 3010 7.096353 CGAATCGAATACAAAGGCGATAAGTAA 60.096 37.037 0.00 0.00 42.01 2.24
2266 3012 5.175126 CGAATCGAATACAAAGGCGATAAGT 59.825 40.000 0.00 0.00 42.01 2.24
2267 3013 5.401376 TCGAATCGAATACAAAGGCGATAAG 59.599 40.000 1.57 0.00 42.01 1.73
2269 3015 4.862350 TCGAATCGAATACAAAGGCGATA 58.138 39.130 1.57 0.00 42.01 2.92
2270 3016 3.713288 TCGAATCGAATACAAAGGCGAT 58.287 40.909 1.57 0.00 44.40 4.58
2271 3017 3.153676 TCGAATCGAATACAAAGGCGA 57.846 42.857 1.57 0.00 37.17 5.54
2273 3019 4.745125 TGAGATCGAATCGAATACAAAGGC 59.255 41.667 10.12 0.00 39.99 4.35
2274 3020 5.175856 GGTGAGATCGAATCGAATACAAAGG 59.824 44.000 10.12 0.00 39.99 3.11
2275 3021 5.980116 AGGTGAGATCGAATCGAATACAAAG 59.020 40.000 10.12 0.00 39.99 2.77
2396 3142 0.165944 GTTTCGTCACCGGAAGCATG 59.834 55.000 9.46 0.00 30.60 4.06
2422 3168 7.010460 TCAGAATCATACACAAGACGCTTATTG 59.990 37.037 0.00 0.00 0.00 1.90
2465 3211 9.638176 ATCATCATCATCATCATCATCATCATT 57.362 29.630 0.00 0.00 0.00 2.57
2482 3228 3.632189 GTCGTCGTCATCATCATCATCA 58.368 45.455 0.00 0.00 0.00 3.07
2485 3231 1.668751 TCGTCGTCGTCATCATCATCA 59.331 47.619 1.33 0.00 38.33 3.07
2488 3234 0.247537 CGTCGTCGTCGTCATCATCA 60.248 55.000 3.67 0.00 38.33 3.07
2489 3235 0.025898 TCGTCGTCGTCGTCATCATC 59.974 55.000 11.41 0.00 38.33 2.92
2491 3237 1.131218 GTCGTCGTCGTCGTCATCA 59.869 57.895 11.41 0.00 38.33 3.07
2501 3247 2.453650 TCATCATCTTCGTCGTCGTC 57.546 50.000 1.33 0.00 38.33 4.20
2502 3248 2.913777 TTCATCATCTTCGTCGTCGT 57.086 45.000 1.33 0.00 38.33 4.34
2512 3258 6.598503 TGATGTGGCTTTCTATTCATCATCT 58.401 36.000 0.00 0.00 37.38 2.90
2515 3261 5.993055 TCTGATGTGGCTTTCTATTCATCA 58.007 37.500 0.00 0.00 39.10 3.07
2548 3294 8.818622 ATGAAGGAATGATCAGAGATCAAAAA 57.181 30.769 13.07 0.00 0.00 1.94
2579 3325 4.084013 CGATGAGTACCAACACAAACTTCC 60.084 45.833 0.00 0.00 29.70 3.46
2580 3326 4.610680 GCGATGAGTACCAACACAAACTTC 60.611 45.833 0.00 0.00 29.70 3.01
2586 3332 3.780902 CATAGCGATGAGTACCAACACA 58.219 45.455 0.00 0.00 34.73 3.72
2608 3354 9.643693 AAGGAAACTGCAAATTATGTTCATAAG 57.356 29.630 10.34 0.21 42.68 1.73
2635 3381 8.062065 ACCAATGTGAACTTTTTAGAAGAACA 57.938 30.769 0.00 0.00 0.00 3.18
2657 3404 2.430248 TCATAGCGACCAGACTACCA 57.570 50.000 0.00 0.00 0.00 3.25
2667 3414 9.483062 GCAAATTATCTTCATATTCATAGCGAC 57.517 33.333 0.00 0.00 0.00 5.19
2742 3489 8.617290 AGGAAACAGACACGTAATCTTTAATT 57.383 30.769 0.00 0.00 0.00 1.40
2743 3490 8.617290 AAGGAAACAGACACGTAATCTTTAAT 57.383 30.769 0.00 0.00 0.00 1.40
2747 3494 6.053005 TCAAAGGAAACAGACACGTAATCTT 58.947 36.000 0.00 0.00 0.00 2.40
2749 3496 5.917541 TCAAAGGAAACAGACACGTAATC 57.082 39.130 0.00 0.00 0.00 1.75
2753 3538 4.007659 ACTTTCAAAGGAAACAGACACGT 58.992 39.130 1.31 0.00 38.07 4.49
2764 3549 3.073946 CCAGTCCCCTTACTTTCAAAGGA 59.926 47.826 1.31 0.00 45.41 3.36
2806 3591 0.169009 GCGGAAGGACAAACTGCATC 59.831 55.000 0.00 0.00 36.16 3.91
2807 3592 1.244019 GGCGGAAGGACAAACTGCAT 61.244 55.000 0.00 0.00 37.61 3.96
2822 3607 3.670625 TCGGGATGAATAAATAAGGCGG 58.329 45.455 0.00 0.00 0.00 6.13
2824 3609 4.906618 TCCTCGGGATGAATAAATAAGGC 58.093 43.478 0.00 0.00 0.00 4.35
2825 3610 5.705905 GGTTCCTCGGGATGAATAAATAAGG 59.294 44.000 0.00 0.00 0.00 2.69
2833 3618 3.580458 CTCTATGGTTCCTCGGGATGAAT 59.420 47.826 0.00 0.00 0.00 2.57
2840 3625 7.067251 GGTATATAGAACTCTATGGTTCCTCGG 59.933 44.444 9.13 0.00 44.56 4.63
2841 3626 7.610692 TGGTATATAGAACTCTATGGTTCCTCG 59.389 40.741 9.13 0.00 44.56 4.63
2842 3627 8.880991 TGGTATATAGAACTCTATGGTTCCTC 57.119 38.462 9.13 0.00 44.56 3.71
2865 3651 4.008074 TGAAGGAAACAGAACTAGCTGG 57.992 45.455 0.00 0.00 40.20 4.85
2867 3653 5.012561 ACTCATGAAGGAAACAGAACTAGCT 59.987 40.000 0.00 0.00 0.00 3.32
2868 3654 5.241662 ACTCATGAAGGAAACAGAACTAGC 58.758 41.667 0.00 0.00 0.00 3.42
2869 3655 9.442047 AAATACTCATGAAGGAAACAGAACTAG 57.558 33.333 0.00 0.00 0.00 2.57
2870 3656 9.793259 AAAATACTCATGAAGGAAACAGAACTA 57.207 29.630 0.00 0.00 0.00 2.24
2871 3657 8.697507 AAAATACTCATGAAGGAAACAGAACT 57.302 30.769 0.00 0.00 0.00 3.01
2916 3702 9.447157 CTTTTCAATTAAATTAAATCAGGGGCA 57.553 29.630 0.00 0.00 0.00 5.36
2954 3742 4.238514 CAACACCTTCAGCTCACTACTAC 58.761 47.826 0.00 0.00 0.00 2.73
2969 3757 8.630037 CCTCTTTAATAAAGTGAAACAACACCT 58.370 33.333 14.29 0.00 41.43 4.00
2992 3780 1.002087 ACCGTGGTTGATCTTGTCCTC 59.998 52.381 0.00 0.00 0.00 3.71
2998 3786 1.340017 CCATGGACCGTGGTTGATCTT 60.340 52.381 23.00 0.00 35.92 2.40
3040 3828 8.650490 TCTAATCAGTGCATTTATGATACTCCA 58.350 33.333 0.00 0.00 33.40 3.86
3051 3839 3.266772 TGTCCCCTCTAATCAGTGCATTT 59.733 43.478 0.00 0.00 0.00 2.32
3056 3844 2.171237 TGCATGTCCCCTCTAATCAGTG 59.829 50.000 0.00 0.00 0.00 3.66
3067 3855 2.017049 GTATGACTTGTGCATGTCCCC 58.983 52.381 13.32 1.49 35.39 4.81
3085 3874 5.258051 ACACCAGGTCTTTTGTTTGAAGTA 58.742 37.500 0.00 0.00 0.00 2.24
3114 3903 4.745125 CGAGCGACTTACATATTTGGTCAT 59.255 41.667 0.00 0.00 0.00 3.06
3124 3913 0.249489 GATGGGCGAGCGACTTACAT 60.249 55.000 0.00 0.00 0.00 2.29
3139 3929 4.469883 CCAGAGCGGGAATGATGG 57.530 61.111 0.00 0.00 0.00 3.51
3158 3948 1.241315 TTAAAGAAGTGGCTGGCCGC 61.241 55.000 16.39 16.39 46.30 6.53
3159 3949 1.133025 CATTAAAGAAGTGGCTGGCCG 59.867 52.381 7.14 0.00 39.42 6.13
3163 3953 1.478105 GCCCCATTAAAGAAGTGGCTG 59.522 52.381 0.00 0.00 34.61 4.85
3164 3954 1.077005 TGCCCCATTAAAGAAGTGGCT 59.923 47.619 0.00 0.00 38.23 4.75
3165 3955 1.555967 TGCCCCATTAAAGAAGTGGC 58.444 50.000 0.00 0.00 37.90 5.01
3166 3956 2.233676 GGTTGCCCCATTAAAGAAGTGG 59.766 50.000 0.00 0.00 0.00 4.00
3167 3957 3.592898 GGTTGCCCCATTAAAGAAGTG 57.407 47.619 0.00 0.00 0.00 3.16
3185 3975 4.309950 ACGAAGCCGCGAAAGGGT 62.310 61.111 8.23 0.00 45.04 4.34
3186 3976 3.788766 CACGAAGCCGCGAAAGGG 61.789 66.667 8.23 0.00 44.67 3.95
3187 3977 3.788766 CCACGAAGCCGCGAAAGG 61.789 66.667 8.23 0.00 39.95 3.11
3188 3978 2.736995 TCCACGAAGCCGCGAAAG 60.737 61.111 8.23 0.00 39.95 2.62
3189 3979 3.039588 GTCCACGAAGCCGCGAAA 61.040 61.111 8.23 0.00 39.95 3.46
3194 3984 3.382832 AGGAGGTCCACGAAGCCG 61.383 66.667 0.00 0.00 42.50 5.52
3195 3985 2.232298 CTCAGGAGGTCCACGAAGCC 62.232 65.000 0.00 0.00 38.89 4.35
3252 4042 9.391006 CTAACAGACCAGCTTTATTATACCAAA 57.609 33.333 0.00 0.00 0.00 3.28
3256 4046 8.959705 AACCTAACAGACCAGCTTTATTATAC 57.040 34.615 0.00 0.00 0.00 1.47
3266 4056 3.308438 TTCGTAACCTAACAGACCAGC 57.692 47.619 0.00 0.00 0.00 4.85
3283 4073 4.858692 CAGGCCAAACAAAACTGATATTCG 59.141 41.667 5.01 0.00 0.00 3.34
3284 4074 5.170748 CCAGGCCAAACAAAACTGATATTC 58.829 41.667 5.01 0.00 0.00 1.75
3286 4076 3.515104 CCCAGGCCAAACAAAACTGATAT 59.485 43.478 5.01 0.00 0.00 1.63
3287 4077 2.896685 CCCAGGCCAAACAAAACTGATA 59.103 45.455 5.01 0.00 0.00 2.15
3289 4079 1.118838 CCCAGGCCAAACAAAACTGA 58.881 50.000 5.01 0.00 0.00 3.41
3309 4102 1.202452 AGCAAGCAAGACAAAACAGCC 60.202 47.619 0.00 0.00 0.00 4.85
3332 4125 5.841957 AATCCAAACAGAAGATATGTGCC 57.158 39.130 0.00 0.00 0.00 5.01
3341 4134 5.356882 TGCGAGTAAAATCCAAACAGAAG 57.643 39.130 0.00 0.00 0.00 2.85
3428 4221 6.016213 ACCAAAATGGGTGTCGTTTAATAC 57.984 37.500 0.87 0.00 43.37 1.89
3471 4274 9.507329 TCAAGAATACAGTTTCTAAAGCATTCT 57.493 29.630 0.00 0.00 34.89 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.