AutoCloner

Multiple sequence alignment - TraesCS7A01G195100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G195100	chr7A	100.000	2819	0	0	673	3491	154559604	154556786	0.000000e+00	5206.0
1	TraesCS7A01G195100	chr7A	100.000	265	0	0	1	265	154560276	154560012	1.130000e-134	490.0
2	TraesCS7A01G195100	chr7A	92.135	89	5	1	1	87	669042332	669042420	1.320000e-24	124.0
3	TraesCS7A01G195100	chr7A	100.000	30	0	0	234	263	154559597	154559568	4.870000e-04	56.5
4	TraesCS7A01G195100	chr7D	98.348	2542	39	3	953	3491	207290995	207288454	0.000000e+00	4458.0
5	TraesCS7A01G195100	chr7D	96.725	2534	71	6	962	3491	7866811	7864286	0.000000e+00	4209.0
6	TraesCS7A01G195100	chr7D	92.821	195	13	1	703	897	207291173	207290980	7.380000e-72	281.0
7	TraesCS7A01G195100	chr7D	80.783	281	14	21	1	249	207291864	207291592	2.140000e-42	183.0
8	TraesCS7A01G195100	chr7D	88.000	100	8	2	760	855	7866945	7866846	7.920000e-22	115.0
9	TraesCS7A01G195100	chr5A	97.669	2531	51	8	948	3473	503664020	503666547	0.000000e+00	4340.0
10	TraesCS7A01G195100	chr5A	87.448	239	14	12	673	897	503663806	503664042	9.610000e-66	261.0
11	TraesCS7A01G195100	chr5A	86.992	123	7	8	118	234	503663703	503663822	2.830000e-26	130.0
12	TraesCS7A01G195100	chr3B	97.630	2532	52	4	962	3488	588460267	588462795	0.000000e+00	4337.0
13	TraesCS7A01G195100	chr3B	94.366	142	7	1	756	897	159773090	159772950	2.110000e-52	217.0
14	TraesCS7A01G195100	chr3B	93.750	64	4	0	794	857	523565955	523566018	2.870000e-16	97.1
15	TraesCS7A01G195100	chr2A	97.329	2546	62	6	948	3488	772721854	772724398	0.000000e+00	4320.0
16	TraesCS7A01G195100	chr2A	86.026	229	17	11	673	897	30041396	30041179	7.540000e-57	231.0
17	TraesCS7A01G195100	chr2A	81.145	297	11	15	1	265	772721388	772721671	2.750000e-46	196.0
18	TraesCS7A01G195100	chr1A	97.272	2529	65	4	962	3488	561085097	561087623	0.000000e+00	4285.0
19	TraesCS7A01G195100	chr1B	96.796	2528	75	5	962	3486	353336541	353339065	0.000000e+00	4215.0
20	TraesCS7A01G195100	chr1B	96.168	2531	96	1	962	3491	348338758	348336228	0.000000e+00	4135.0
21	TraesCS7A01G195100	chr4B	94.635	2535	115	16	962	3491	448530000	448527482	0.000000e+00	3908.0
22	TraesCS7A01G195100	chr4B	93.750	64	4	0	794	857	448530096	448530033	2.870000e-16	97.1
23	TraesCS7A01G195100	chr6B	91.228	57	1	4	35	88	584006395	584006450	1.340000e-09	75.0
24	TraesCS7A01G195100	chr2B	92.308	52	2	1	806	857	5431573	5431622	4.830000e-09	73.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G195100	chr7A	154556786	154560276	3490	True	1917.500000	5206	100.000000	1	3491	3	chr7A.!!$R1	3490
1	TraesCS7A01G195100	chr7D	7864286	7866945	2659	True	2162.000000	4209	92.362500	760	3491	2	chr7D.!!$R1	2731
2	TraesCS7A01G195100	chr7D	207288454	207291864	3410	True	1640.666667	4458	90.650667	1	3491	3	chr7D.!!$R2	3490
3	TraesCS7A01G195100	chr5A	503663703	503666547	2844	False	1577.000000	4340	90.703000	118	3473	3	chr5A.!!$F1	3355
4	TraesCS7A01G195100	chr3B	588460267	588462795	2528	False	4337.000000	4337	97.630000	962	3488	1	chr3B.!!$F2	2526
5	TraesCS7A01G195100	chr2A	772721388	772724398	3010	False	2258.000000	4320	89.237000	1	3488	2	chr2A.!!$F1	3487
6	TraesCS7A01G195100	chr1A	561085097	561087623	2526	False	4285.000000	4285	97.272000	962	3488	1	chr1A.!!$F1	2526
7	TraesCS7A01G195100	chr1B	353336541	353339065	2524	False	4215.000000	4215	96.796000	962	3486	1	chr1B.!!$F1	2524
8	TraesCS7A01G195100	chr1B	348336228	348338758	2530	True	4135.000000	4135	96.168000	962	3491	1	chr1B.!!$R1	2529
9	TraesCS7A01G195100	chr4B	448527482	448530096	2614	True	2002.550000	3908	94.192500	794	3491	2	chr4B.!!$R1	2697

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
951	1428	0.321919	CGGCCCACCATCATATCCTG	60.322	60.0	0.0	0.0	34.57	3.86	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2491	2981	2.484287	ATTCAGCCCACTCCCCGTTG	62.484	60.0	0.0	0.0	0.0	4.1	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
101	107	2.840203	AATCCCCTCCCCTGCTCGAA	62.840	60.000	0.00	0.00	0.00	3.71
102	108	2.840203	ATCCCCTCCCCTGCTCGAAA	62.840	60.000	0.00	0.00	0.00	3.46
893	1370	9.325198	GGATTCTTCCTTGTTTTGTTAATTTGT	57.675	29.630	0.00	0.00	39.14	2.83
898	1375	9.796120	CTTCCTTGTTTTGTTAATTTGTAGACA	57.204	29.630	0.00	0.00	0.00	3.41
899	1376	9.796120	TTCCTTGTTTTGTTAATTTGTAGACAG	57.204	29.630	0.00	0.00	0.00	3.51
900	1377	8.962679	TCCTTGTTTTGTTAATTTGTAGACAGT	58.037	29.630	0.00	0.00	0.00	3.55
901	1378	9.581099	CCTTGTTTTGTTAATTTGTAGACAGTT	57.419	29.630	0.00	0.00	0.00	3.16
904	1381	9.915629	TGTTTTGTTAATTTGTAGACAGTTTGT	57.084	25.926	0.00	0.00	0.00	2.83
908	1385	9.616156	TTGTTAATTTGTAGACAGTTTGTAGGA	57.384	29.630	0.00	0.00	0.00	2.94
909	1386	9.787435	TGTTAATTTGTAGACAGTTTGTAGGAT	57.213	29.630	0.00	0.00	0.00	3.24
913	1390	7.962964	TTTGTAGACAGTTTGTAGGATTCTG	57.037	36.000	0.00	0.00	0.00	3.02
914	1391	6.037786	TGTAGACAGTTTGTAGGATTCTGG	57.962	41.667	0.00	0.00	0.00	3.86
915	1392	3.944087	AGACAGTTTGTAGGATTCTGGC	58.056	45.455	0.00	0.00	34.73	4.85
916	1393	3.584848	AGACAGTTTGTAGGATTCTGGCT	59.415	43.478	0.00	0.00	39.33	4.75
917	1394	4.042187	AGACAGTTTGTAGGATTCTGGCTT	59.958	41.667	0.00	0.00	41.01	4.35
918	1395	4.074970	ACAGTTTGTAGGATTCTGGCTTG	58.925	43.478	0.00	0.00	0.00	4.01
919	1396	4.074970	CAGTTTGTAGGATTCTGGCTTGT	58.925	43.478	0.00	0.00	0.00	3.16
920	1397	4.074970	AGTTTGTAGGATTCTGGCTTGTG	58.925	43.478	0.00	0.00	0.00	3.33
921	1398	2.787473	TGTAGGATTCTGGCTTGTGG	57.213	50.000	0.00	0.00	0.00	4.17
922	1399	2.265367	TGTAGGATTCTGGCTTGTGGA	58.735	47.619	0.00	0.00	0.00	4.02
923	1400	2.846206	TGTAGGATTCTGGCTTGTGGAT	59.154	45.455	0.00	0.00	0.00	3.41
924	1401	2.431954	AGGATTCTGGCTTGTGGATG	57.568	50.000	0.00	0.00	0.00	3.51
925	1402	0.743097	GGATTCTGGCTTGTGGATGC	59.257	55.000	0.00	0.00	0.00	3.91
926	1403	1.466856	GATTCTGGCTTGTGGATGCA	58.533	50.000	0.00	0.00	0.00	3.96
927	1404	1.820519	GATTCTGGCTTGTGGATGCAA	59.179	47.619	0.00	0.00	0.00	4.08
928	1405	0.961019	TTCTGGCTTGTGGATGCAAC	59.039	50.000	0.00	0.00	0.00	4.17
929	1406	1.210931	CTGGCTTGTGGATGCAACG	59.789	57.895	0.00	0.00	0.00	4.10
930	1407	2.126346	GGCTTGTGGATGCAACGC	60.126	61.111	0.00	0.00	0.00	4.84
931	1408	2.644418	GCTTGTGGATGCAACGCA	59.356	55.556	4.15	4.15	44.86	5.24
932	1409	1.730547	GCTTGTGGATGCAACGCAC	60.731	57.895	7.42	7.80	43.04	5.34
933	1410	1.440850	CTTGTGGATGCAACGCACG	60.441	57.895	7.42	3.03	43.04	5.34
934	1411	2.784957	CTTGTGGATGCAACGCACGG	62.785	60.000	7.42	1.63	43.04	4.94
935	1412	4.759096	GTGGATGCAACGCACGGC	62.759	66.667	0.00	0.00	43.04	5.68
946	1423	2.191908	GCACGGCCCACCATCATA	59.808	61.111	0.00	0.00	34.57	2.15
947	1424	1.228245	GCACGGCCCACCATCATAT	60.228	57.895	0.00	0.00	34.57	1.78
948	1425	1.237285	GCACGGCCCACCATCATATC	61.237	60.000	0.00	0.00	34.57	1.63
949	1426	0.606401	CACGGCCCACCATCATATCC	60.606	60.000	0.00	0.00	34.57	2.59
950	1427	0.768221	ACGGCCCACCATCATATCCT	60.768	55.000	0.00	0.00	34.57	3.24
951	1428	0.321919	CGGCCCACCATCATATCCTG	60.322	60.000	0.00	0.00	34.57	3.86
952	1429	0.773644	GGCCCACCATCATATCCTGT	59.226	55.000	0.00	0.00	35.26	4.00
953	1430	1.145738	GGCCCACCATCATATCCTGTT	59.854	52.381	0.00	0.00	35.26	3.16
954	1431	2.424812	GGCCCACCATCATATCCTGTTT	60.425	50.000	0.00	0.00	35.26	2.83
955	1432	2.624838	GCCCACCATCATATCCTGTTTG	59.375	50.000	0.00	0.00	0.00	2.93
956	1433	3.902218	CCCACCATCATATCCTGTTTGT	58.098	45.455	0.00	0.00	0.00	2.83
957	1434	4.688597	GCCCACCATCATATCCTGTTTGTA	60.689	45.833	0.00	0.00	0.00	2.41
958	1435	5.065914	CCCACCATCATATCCTGTTTGTAG	58.934	45.833	0.00	0.00	0.00	2.74
959	1436	5.397899	CCCACCATCATATCCTGTTTGTAGT	60.398	44.000	0.00	0.00	0.00	2.73
960	1437	5.760253	CCACCATCATATCCTGTTTGTAGTC	59.240	44.000	0.00	0.00	0.00	2.59
1041	1521	2.301346	GGTGGTGGCAATAGGATTCTG	58.699	52.381	0.00	0.00	0.00	3.02
1044	1524	1.133668	GGTGGCAATAGGATTCTGGCT	60.134	52.381	0.00	0.00	36.63	4.75
1086	1567	8.199449	TCAAAAGCAAAGAAGATTGATGAAACT	58.801	29.630	0.00	0.00	31.84	2.66
1276	1758	4.158949	CAGATGATGAACCAATGGAAGCAA	59.841	41.667	6.16	0.00	0.00	3.91
1492	1974	8.729756	CATGGATTGAGTATAGTGTGACAAAAA	58.270	33.333	0.00	0.00	0.00	1.94
1684	2168	3.701205	TCACTACACCACAAGCATCAT	57.299	42.857	0.00	0.00	0.00	2.45
2005	2491	9.739276	AATTAGTCATTGAAGAACTTGATGGTA	57.261	29.630	0.00	0.00	0.00	3.25
2113	2599	4.740902	AGGAAGGGCTGTTGTAAGATTTT	58.259	39.130	0.00	0.00	0.00	1.82
2410	2900	3.426525	GCACACTTGTTAAATGCTCTTGC	59.573	43.478	0.00	0.00	40.20	4.01
2491	2981	4.158394	TGCATTGGAATTGGAAGAAGTAGC	59.842	41.667	0.00	0.00	0.00	3.58
2922	3415	4.408921	TGTTGATATGGAGGGTCCTTACTG	59.591	45.833	0.00	0.00	37.46	2.74
2995	3488	6.037172	ACCATCGCTTCAAAGTTGATATGTAC	59.963	38.462	0.00	0.00	37.00	2.90
3277	3771	4.580167	TGTGAGCTTTCAGTTATGCTTGTT	59.420	37.500	0.00	0.00	35.76	2.83
3407	3901	7.987458	TGAACTATGTGAAGAATAAGCTAAGGG	59.013	37.037	0.00	0.00	0.00	3.95
3433	3927	7.043565	GCAAAATGGGTGATGATTACTTGAAT	58.956	34.615	0.00	0.00	0.00	2.57
3488	3982	9.745018	AATTCTTCAATCAAGTAAAGGATGAGA	57.255	29.630	0.00	0.00	33.27	3.27

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
4	5	7.129622	GTGCGTTGCAGCTATGTATTAAATTA	58.870	34.615	0.00	0.00	40.08	1.40
7	8	4.493382	CGTGCGTTGCAGCTATGTATTAAA	60.493	41.667	0.00	0.00	40.08	1.52
767	1240	1.296715	GCAGGCGGGAGAAAGAAGA	59.703	57.895	0.00	0.00	0.00	2.87
768	1241	2.103042	CGCAGGCGGGAGAAAGAAG	61.103	63.158	5.63	0.00	35.56	2.85
891	1368	5.568825	GCCAGAATCCTACAAACTGTCTACA	60.569	44.000	0.00	0.00	0.00	2.74
892	1369	4.870991	GCCAGAATCCTACAAACTGTCTAC	59.129	45.833	0.00	0.00	0.00	2.59
893	1370	4.777896	AGCCAGAATCCTACAAACTGTCTA	59.222	41.667	0.00	0.00	0.00	2.59
894	1371	3.584848	AGCCAGAATCCTACAAACTGTCT	59.415	43.478	0.00	0.00	0.00	3.41
895	1372	3.944087	AGCCAGAATCCTACAAACTGTC	58.056	45.455	0.00	0.00	0.00	3.51
896	1373	4.074970	CAAGCCAGAATCCTACAAACTGT	58.925	43.478	0.00	0.00	0.00	3.55
897	1374	4.074970	ACAAGCCAGAATCCTACAAACTG	58.925	43.478	0.00	0.00	0.00	3.16
898	1375	4.074970	CACAAGCCAGAATCCTACAAACT	58.925	43.478	0.00	0.00	0.00	2.66
899	1376	3.191371	CCACAAGCCAGAATCCTACAAAC	59.809	47.826	0.00	0.00	0.00	2.93
900	1377	3.073798	TCCACAAGCCAGAATCCTACAAA	59.926	43.478	0.00	0.00	0.00	2.83
901	1378	2.642311	TCCACAAGCCAGAATCCTACAA	59.358	45.455	0.00	0.00	0.00	2.41
902	1379	2.265367	TCCACAAGCCAGAATCCTACA	58.735	47.619	0.00	0.00	0.00	2.74
903	1380	3.209410	CATCCACAAGCCAGAATCCTAC	58.791	50.000	0.00	0.00	0.00	3.18
904	1381	2.421952	GCATCCACAAGCCAGAATCCTA	60.422	50.000	0.00	0.00	0.00	2.94
905	1382	1.684248	GCATCCACAAGCCAGAATCCT	60.684	52.381	0.00	0.00	0.00	3.24
906	1383	0.743097	GCATCCACAAGCCAGAATCC	59.257	55.000	0.00	0.00	0.00	3.01
907	1384	1.466856	TGCATCCACAAGCCAGAATC	58.533	50.000	0.00	0.00	0.00	2.52
908	1385	1.547372	GTTGCATCCACAAGCCAGAAT	59.453	47.619	0.00	0.00	0.00	2.40
909	1386	0.961019	GTTGCATCCACAAGCCAGAA	59.039	50.000	0.00	0.00	0.00	3.02
910	1387	1.236616	CGTTGCATCCACAAGCCAGA	61.237	55.000	0.00	0.00	0.00	3.86
911	1388	1.210931	CGTTGCATCCACAAGCCAG	59.789	57.895	0.00	0.00	0.00	4.85
912	1389	2.918345	GCGTTGCATCCACAAGCCA	61.918	57.895	0.00	0.00	0.00	4.75
913	1390	2.126346	GCGTTGCATCCACAAGCC	60.126	61.111	0.00	0.00	0.00	4.35
914	1391	1.730547	GTGCGTTGCATCCACAAGC	60.731	57.895	9.95	0.17	41.91	4.01
915	1392	1.440850	CGTGCGTTGCATCCACAAG	60.441	57.895	13.36	2.24	41.91	3.16
916	1393	2.636462	CGTGCGTTGCATCCACAA	59.364	55.556	13.36	0.00	41.91	3.33
917	1394	3.353029	CCGTGCGTTGCATCCACA	61.353	61.111	13.36	0.76	41.91	4.17
918	1395	4.759096	GCCGTGCGTTGCATCCAC	62.759	66.667	0.00	0.00	41.91	4.02
928	1405	3.748660	TATGATGGTGGGCCGTGCG	62.749	63.158	0.00	0.00	37.67	5.34
929	1406	1.228245	ATATGATGGTGGGCCGTGC	60.228	57.895	0.00	0.00	37.67	5.34
930	1407	0.606401	GGATATGATGGTGGGCCGTG	60.606	60.000	0.00	0.00	37.67	4.94
931	1408	0.768221	AGGATATGATGGTGGGCCGT	60.768	55.000	0.00	0.00	37.67	5.68
932	1409	0.321919	CAGGATATGATGGTGGGCCG	60.322	60.000	0.00	0.00	37.67	6.13
933	1410	0.773644	ACAGGATATGATGGTGGGCC	59.226	55.000	0.00	0.00	0.00	5.80
934	1411	2.624838	CAAACAGGATATGATGGTGGGC	59.375	50.000	0.00	0.00	0.00	5.36
935	1412	3.902218	ACAAACAGGATATGATGGTGGG	58.098	45.455	0.00	0.00	0.00	4.61
936	1413	5.684704	ACTACAAACAGGATATGATGGTGG	58.315	41.667	0.00	0.00	0.00	4.61
937	1414	6.481313	CAGACTACAAACAGGATATGATGGTG	59.519	42.308	0.00	0.00	0.00	4.17
938	1415	6.156949	ACAGACTACAAACAGGATATGATGGT	59.843	38.462	0.00	0.00	0.00	3.55
939	1416	6.586344	ACAGACTACAAACAGGATATGATGG	58.414	40.000	0.00	0.00	0.00	3.51
940	1417	8.633561	TCTACAGACTACAAACAGGATATGATG	58.366	37.037	0.00	0.00	0.00	3.07
941	1418	8.768501	TCTACAGACTACAAACAGGATATGAT	57.231	34.615	0.00	0.00	0.00	2.45
942	1419	8.633561	CATCTACAGACTACAAACAGGATATGA	58.366	37.037	0.00	0.00	0.00	2.15
943	1420	7.383572	GCATCTACAGACTACAAACAGGATATG	59.616	40.741	0.00	0.00	0.00	1.78
944	1421	7.288852	AGCATCTACAGACTACAAACAGGATAT	59.711	37.037	0.00	0.00	0.00	1.63
945	1422	6.607600	AGCATCTACAGACTACAAACAGGATA	59.392	38.462	0.00	0.00	0.00	2.59
946	1423	5.423610	AGCATCTACAGACTACAAACAGGAT	59.576	40.000	0.00	0.00	0.00	3.24
947	1424	4.772624	AGCATCTACAGACTACAAACAGGA	59.227	41.667	0.00	0.00	0.00	3.86
948	1425	5.078411	AGCATCTACAGACTACAAACAGG	57.922	43.478	0.00	0.00	0.00	4.00
949	1426	8.709386	AATTAGCATCTACAGACTACAAACAG	57.291	34.615	0.00	0.00	0.00	3.16
950	1427	9.151471	GAAATTAGCATCTACAGACTACAAACA	57.849	33.333	0.00	0.00	0.00	2.83
951	1428	9.372369	AGAAATTAGCATCTACAGACTACAAAC	57.628	33.333	0.00	0.00	0.00	2.93
952	1429	9.944376	AAGAAATTAGCATCTACAGACTACAAA	57.056	29.630	0.00	0.00	0.00	2.83
953	1430	9.587772	GAAGAAATTAGCATCTACAGACTACAA	57.412	33.333	0.00	0.00	0.00	2.41
954	1431	8.198109	GGAAGAAATTAGCATCTACAGACTACA	58.802	37.037	0.00	0.00	0.00	2.74
955	1432	8.417884	AGGAAGAAATTAGCATCTACAGACTAC	58.582	37.037	0.00	0.00	0.00	2.73
956	1433	8.540507	AGGAAGAAATTAGCATCTACAGACTA	57.459	34.615	0.00	0.00	0.00	2.59
957	1434	7.430760	AGGAAGAAATTAGCATCTACAGACT	57.569	36.000	0.00	0.00	0.00	3.24
958	1435	7.550906	ACAAGGAAGAAATTAGCATCTACAGAC	59.449	37.037	0.00	0.00	0.00	3.51
959	1436	7.624549	ACAAGGAAGAAATTAGCATCTACAGA	58.375	34.615	0.00	0.00	0.00	3.41
960	1437	7.856145	ACAAGGAAGAAATTAGCATCTACAG	57.144	36.000	0.00	0.00	0.00	2.74
1086	1567	2.560981	TGCACTCTGATTCGGTGTAGAA	59.439	45.455	0.11	0.00	33.96	2.10
1276	1758	2.270352	TGTTCGAGTGCCTCCAAATT	57.730	45.000	0.00	0.00	0.00	1.82
1295	1777	1.072965	GAATCCGCTTCCCAGGATCAT	59.927	52.381	0.00	0.00	45.78	2.45
1684	2168	5.654650	TGTTTGAAGCAAAAGACTCCCTAAA	59.345	36.000	0.00	0.00	35.03	1.85
2113	2599	3.698539	TCTTGAACATGAGCAACACCAAA	59.301	39.130	0.00	0.00	0.00	3.28
2119	2605	6.109359	AGGTAGTATCTTGAACATGAGCAAC	58.891	40.000	0.00	0.00	0.00	4.17
2410	2900	7.487189	GCATTCTCATCTTTTTACAAGACATGG	59.513	37.037	0.00	0.00	0.00	3.66
2491	2981	2.484287	ATTCAGCCCACTCCCCGTTG	62.484	60.000	0.00	0.00	0.00	4.10
2995	3488	6.653273	ATTTGACTATCAATGACACTCACG	57.347	37.500	0.00	0.00	36.11	4.35
3013	3506	6.003326	TCTGCCATTCAACTCACTAATTTGA	58.997	36.000	0.00	0.00	0.00	2.69
3277	3771	4.979943	TTGTTCATGCTTGTTTGTCTCA	57.020	36.364	0.00	0.00	0.00	3.27
3325	3819	6.605119	AGCTACTGGCAGAATTAATACCAAT	58.395	36.000	23.66	0.00	44.79	3.16
3407	3901	5.105392	TCAAGTAATCATCACCCATTTTGCC	60.105	40.000	0.00	0.00	0.00	4.52
3433	3927	9.743057	CTCTCAACAAATGTAACCAAACAATTA	57.257	29.630	0.00	0.00	32.02	1.40

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.