Multiple sequence alignment - TraesCS7A01G194900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G194900 chr7A 100.000 3771 0 0 1 3771 154383349 154387119 0.000000e+00 6964
1 TraesCS7A01G194900 chr7B 93.472 2160 80 26 890 3033 115236995 115239109 0.000000e+00 3151
2 TraesCS7A01G194900 chr7B 86.380 558 66 8 1 551 115236435 115236989 5.390000e-168 601
3 TraesCS7A01G194900 chr7B 81.931 404 36 10 3136 3539 115239107 115239473 1.320000e-79 307
4 TraesCS7A01G194900 chr7B 97.931 145 3 0 3627 3771 115239473 115239617 6.250000e-63 252
5 TraesCS7A01G194900 chr7B 93.805 113 7 0 3028 3140 548384244 548384356 1.800000e-38 171
6 TraesCS7A01G194900 chr7D 96.703 1759 55 2 946 2703 153296331 153298087 0.000000e+00 2924
7 TraesCS7A01G194900 chr7D 86.201 558 60 9 1 552 153295770 153296316 4.200000e-164 588
8 TraesCS7A01G194900 chr7D 92.174 345 17 7 2689 3026 153298126 153298467 2.630000e-131 479
9 TraesCS7A01G194900 chr7D 83.005 406 28 19 3136 3540 153298465 153298830 2.810000e-86 329
10 TraesCS7A01G194900 chr7D 90.625 128 8 1 3627 3750 153298826 153298953 2.330000e-37 167
11 TraesCS7A01G194900 chr7D 89.362 94 6 1 3538 3631 562247961 562248050 8.560000e-22 115
12 TraesCS7A01G194900 chr3A 88.816 304 31 3 549 850 682358685 682358987 1.650000e-98 370
13 TraesCS7A01G194900 chr2A 88.816 304 29 5 551 850 459017004 459017306 5.950000e-98 368
14 TraesCS7A01G194900 chr2A 88.599 307 29 6 547 849 539305311 539305007 5.950000e-98 368
15 TraesCS7A01G194900 chr2B 88.312 308 29 7 545 849 148251443 148251746 2.770000e-96 363
16 TraesCS7A01G194900 chr2B 93.694 111 7 0 3027 3137 17431096 17430986 2.330000e-37 167
17 TraesCS7A01G194900 chr4D 88.158 304 32 4 551 851 62483783 62483481 3.580000e-95 359
18 TraesCS7A01G194900 chr1B 88.197 305 31 5 551 851 484457555 484457858 3.580000e-95 359
19 TraesCS7A01G194900 chr1D 87.702 309 34 4 545 850 318585620 318585927 1.290000e-94 357
20 TraesCS7A01G194900 chr4A 86.728 324 36 7 538 855 572708403 572708725 1.670000e-93 353
21 TraesCS7A01G194900 chr4A 93.694 111 7 0 3028 3138 98600195 98600085 2.330000e-37 167
22 TraesCS7A01G194900 chr4A 89.216 102 3 5 3538 3631 731393937 731394038 1.840000e-23 121
23 TraesCS7A01G194900 chr6B 87.541 305 32 6 551 850 634640627 634640324 7.750000e-92 348
24 TraesCS7A01G194900 chr6B 88.966 145 10 6 3018 3158 567392756 567392614 1.390000e-39 174
25 TraesCS7A01G194900 chr6B 93.694 111 7 0 3028 3138 214085158 214085048 2.330000e-37 167
26 TraesCS7A01G194900 chr6B 87.619 105 6 5 3534 3631 675621900 675621796 8.560000e-22 115
27 TraesCS7A01G194900 chr1A 94.495 109 6 0 3030 3138 387352976 387353084 6.480000e-38 169
28 TraesCS7A01G194900 chr6A 92.308 117 9 0 3028 3144 106923443 106923559 2.330000e-37 167
29 TraesCS7A01G194900 chr6A 89.796 98 6 2 3538 3631 614874469 614874566 5.120000e-24 122
30 TraesCS7A01G194900 chr5D 91.736 121 9 1 3018 3138 544700373 544700492 2.330000e-37 167
31 TraesCS7A01G194900 chr3B 92.982 114 7 1 3031 3143 63469116 63469003 8.380000e-37 165
32 TraesCS7A01G194900 chr3B 92.708 96 6 1 3535 3630 502805091 502804997 1.830000e-28 137
33 TraesCS7A01G194900 chr5B 93.182 88 4 1 3543 3630 656715909 656715824 1.100000e-25 128
34 TraesCS7A01G194900 chr5B 92.045 88 5 1 3538 3625 656715824 656715909 5.120000e-24 122
35 TraesCS7A01G194900 chr4B 90.526 95 8 1 3536 3630 657468644 657468737 1.420000e-24 124
36 TraesCS7A01G194900 chr4B 89.362 94 9 1 3538 3631 657468737 657468645 2.380000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G194900 chr7A 154383349 154387119 3770 False 6964.00 6964 100.0000 1 3771 1 chr7A.!!$F1 3770
1 TraesCS7A01G194900 chr7B 115236435 115239617 3182 False 1077.75 3151 89.9285 1 3771 4 chr7B.!!$F2 3770
2 TraesCS7A01G194900 chr7D 153295770 153298953 3183 False 897.40 2924 89.7416 1 3750 5 chr7D.!!$F2 3749

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 639 0.036483 ATGCACACACGCACATCCTA 60.036 50.0 0.0 0.0 46.56 2.94 F
633 642 0.037326 CACACACGCACATCCTACCT 60.037 55.0 0.0 0.0 0.00 3.08 F
701 710 0.037697 ACGAAGTCATTGTAGCCGCA 60.038 50.0 0.0 0.0 29.74 5.69 F
822 831 0.103208 CTGCGATACCACTGTCCCTC 59.897 60.0 0.0 0.0 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1815 1836 0.037326 GAGCGACAGGTTCACCATGA 60.037 55.0 0.0 0.0 38.89 3.07 R
2212 2233 0.107703 GGTTCGCCAGGATCATCACA 60.108 55.0 0.0 0.0 37.19 3.58 R
2679 2700 0.968393 GAGAGGAGAGAAGCGTGGGT 60.968 60.0 0.0 0.0 0.00 4.51 R
2771 2847 0.311165 CCGGAGCAGGTAGATACACG 59.689 60.0 0.0 0.0 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.261897 ACTTGACGTCCCTTGATTGATCT 59.738 43.478 14.12 0.00 0.00 2.75
30 31 3.201290 CGTCCCTTGATTGATCTCTTGG 58.799 50.000 0.00 0.00 0.00 3.61
33 34 5.444176 GTCCCTTGATTGATCTCTTGGAAT 58.556 41.667 0.00 0.00 0.00 3.01
87 88 7.319142 TCTTCAATAAACGATTGCATCATCA 57.681 32.000 0.00 0.00 44.11 3.07
88 89 7.933396 TCTTCAATAAACGATTGCATCATCAT 58.067 30.769 0.00 0.00 44.11 2.45
89 90 8.407832 TCTTCAATAAACGATTGCATCATCATT 58.592 29.630 0.00 0.00 44.11 2.57
152 153 6.349243 TCCATAAACTCGGTGTAGAAGAAA 57.651 37.500 0.00 0.00 0.00 2.52
154 155 7.391620 TCCATAAACTCGGTGTAGAAGAAATT 58.608 34.615 0.00 0.00 0.00 1.82
160 161 5.820947 ACTCGGTGTAGAAGAAATTTGTGTT 59.179 36.000 0.00 0.00 0.00 3.32
171 172 6.573664 AGAAATTTGTGTTCGAATCCATCA 57.426 33.333 0.00 0.00 0.00 3.07
185 186 2.715046 TCCATCATGTTTGCTCCAGAC 58.285 47.619 0.00 0.00 0.00 3.51
300 305 3.950794 CTTGCGGCGGCTAGACCAA 62.951 63.158 20.11 0.97 43.49 3.67
318 323 0.836400 AAGGAAGAAGGGAGGCGTGA 60.836 55.000 0.00 0.00 0.00 4.35
325 330 2.281484 GGGAGGCGTGAACAAGCA 60.281 61.111 13.65 0.00 37.55 3.91
326 331 2.328099 GGGAGGCGTGAACAAGCAG 61.328 63.158 13.65 0.00 37.55 4.24
425 430 1.437986 GGAGGATGAAGACGGTCGG 59.562 63.158 1.89 0.00 0.00 4.79
426 431 1.321074 GGAGGATGAAGACGGTCGGT 61.321 60.000 1.89 0.00 0.00 4.69
464 469 7.362920 GGCACTTGGATGTCACATTTTTATAGT 60.363 37.037 0.00 0.00 0.00 2.12
543 552 9.304731 CATGAATGTAATAGTGAATGTTTTGGG 57.695 33.333 0.00 0.00 0.00 4.12
552 561 6.048732 AGTGAATGTTTTGGGTTTCTGTTT 57.951 33.333 0.00 0.00 0.00 2.83
553 562 6.472016 AGTGAATGTTTTGGGTTTCTGTTTT 58.528 32.000 0.00 0.00 0.00 2.43
554 563 6.939730 AGTGAATGTTTTGGGTTTCTGTTTTT 59.060 30.769 0.00 0.00 0.00 1.94
574 583 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
576 585 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
577 586 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
578 587 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
579 588 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
580 589 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
581 590 1.733041 GTACAGACGCAAGCGCTCA 60.733 57.895 12.06 0.83 44.19 4.26
582 591 1.078759 GTACAGACGCAAGCGCTCAT 61.079 55.000 12.06 0.00 44.19 2.90
583 592 0.454196 TACAGACGCAAGCGCTCATA 59.546 50.000 12.06 5.16 44.19 2.15
584 593 1.078759 ACAGACGCAAGCGCTCATAC 61.079 55.000 12.06 1.58 44.19 2.39
585 594 1.078201 CAGACGCAAGCGCTCATACA 61.078 55.000 12.06 0.00 44.19 2.29
586 595 0.179100 AGACGCAAGCGCTCATACAT 60.179 50.000 12.06 0.00 44.19 2.29
587 596 1.067060 AGACGCAAGCGCTCATACATA 59.933 47.619 12.06 0.00 44.19 2.29
588 597 1.190323 GACGCAAGCGCTCATACATAC 59.810 52.381 12.06 0.00 44.19 2.39
589 598 0.159554 CGCAAGCGCTCATACATACG 59.840 55.000 12.06 0.00 35.30 3.06
596 605 3.954030 CGCTCATACATACGCACATAC 57.046 47.619 0.00 0.00 0.00 2.39
597 606 3.305110 CGCTCATACATACGCACATACA 58.695 45.455 0.00 0.00 0.00 2.29
598 607 3.119628 CGCTCATACATACGCACATACAC 59.880 47.826 0.00 0.00 0.00 2.90
599 608 4.299155 GCTCATACATACGCACATACACT 58.701 43.478 0.00 0.00 0.00 3.55
600 609 4.383052 GCTCATACATACGCACATACACTC 59.617 45.833 0.00 0.00 0.00 3.51
601 610 5.508200 TCATACATACGCACATACACTCA 57.492 39.130 0.00 0.00 0.00 3.41
602 611 6.084326 TCATACATACGCACATACACTCAT 57.916 37.500 0.00 0.00 0.00 2.90
603 612 7.209471 TCATACATACGCACATACACTCATA 57.791 36.000 0.00 0.00 0.00 2.15
604 613 7.081976 TCATACATACGCACATACACTCATAC 58.918 38.462 0.00 0.00 0.00 2.39
605 614 5.257082 ACATACGCACATACACTCATACA 57.743 39.130 0.00 0.00 0.00 2.29
606 615 5.842907 ACATACGCACATACACTCATACAT 58.157 37.500 0.00 0.00 0.00 2.29
607 616 6.977213 ACATACGCACATACACTCATACATA 58.023 36.000 0.00 0.00 0.00 2.29
608 617 7.602753 ACATACGCACATACACTCATACATAT 58.397 34.615 0.00 0.00 0.00 1.78
609 618 7.542130 ACATACGCACATACACTCATACATATG 59.458 37.037 0.00 0.00 35.04 1.78
610 619 6.084326 ACGCACATACACTCATACATATGA 57.916 37.500 10.38 1.75 40.19 2.15
611 620 6.512297 ACGCACATACACTCATACATATGAA 58.488 36.000 10.38 0.00 41.72 2.57
612 621 7.154656 ACGCACATACACTCATACATATGAAT 58.845 34.615 10.38 0.00 41.72 2.57
613 622 7.116805 ACGCACATACACTCATACATATGAATG 59.883 37.037 10.38 8.43 43.40 2.67
614 623 7.239271 GCACATACACTCATACATATGAATGC 58.761 38.462 10.38 5.01 42.01 3.56
615 624 7.095102 GCACATACACTCATACATATGAATGCA 60.095 37.037 10.38 0.00 42.01 3.96
616 625 8.225777 CACATACACTCATACATATGAATGCAC 58.774 37.037 10.38 0.00 42.01 4.57
617 626 7.933033 ACATACACTCATACATATGAATGCACA 59.067 33.333 10.38 0.00 42.01 4.57
618 627 6.609237 ACACTCATACATATGAATGCACAC 57.391 37.500 10.38 0.00 42.01 3.82
619 628 6.114767 ACACTCATACATATGAATGCACACA 58.885 36.000 10.38 0.00 42.01 3.72
620 629 6.037500 ACACTCATACATATGAATGCACACAC 59.962 38.462 10.38 0.00 42.01 3.82
621 630 5.234972 ACTCATACATATGAATGCACACACG 59.765 40.000 10.38 0.00 41.72 4.49
622 631 2.830772 ACATATGAATGCACACACGC 57.169 45.000 10.38 0.00 36.50 5.34
623 632 4.260702 CATACATATGAATGCACACACGCA 60.261 41.667 10.38 0.00 40.12 5.24
624 633 2.159531 ACATATGAATGCACACACGCAC 60.160 45.455 10.38 0.00 46.56 5.34
625 634 1.517242 TATGAATGCACACACGCACA 58.483 45.000 0.00 0.00 46.56 4.57
626 635 0.883153 ATGAATGCACACACGCACAT 59.117 45.000 0.00 0.00 46.56 3.21
627 636 0.238025 TGAATGCACACACGCACATC 59.762 50.000 0.00 0.00 46.56 3.06
628 637 0.454957 GAATGCACACACGCACATCC 60.455 55.000 0.00 0.00 46.56 3.51
629 638 0.890542 AATGCACACACGCACATCCT 60.891 50.000 0.00 0.00 46.56 3.24
630 639 0.036483 ATGCACACACGCACATCCTA 60.036 50.000 0.00 0.00 46.56 2.94
631 640 0.948623 TGCACACACGCACATCCTAC 60.949 55.000 0.00 0.00 36.86 3.18
632 641 1.635663 GCACACACGCACATCCTACC 61.636 60.000 0.00 0.00 0.00 3.18
633 642 0.037326 CACACACGCACATCCTACCT 60.037 55.000 0.00 0.00 0.00 3.08
634 643 0.246635 ACACACGCACATCCTACCTC 59.753 55.000 0.00 0.00 0.00 3.85
635 644 0.532573 CACACGCACATCCTACCTCT 59.467 55.000 0.00 0.00 0.00 3.69
636 645 1.749063 CACACGCACATCCTACCTCTA 59.251 52.381 0.00 0.00 0.00 2.43
637 646 2.362397 CACACGCACATCCTACCTCTAT 59.638 50.000 0.00 0.00 0.00 1.98
638 647 2.623889 ACACGCACATCCTACCTCTATC 59.376 50.000 0.00 0.00 0.00 2.08
639 648 2.623416 CACGCACATCCTACCTCTATCA 59.377 50.000 0.00 0.00 0.00 2.15
640 649 2.887783 ACGCACATCCTACCTCTATCAG 59.112 50.000 0.00 0.00 0.00 2.90
641 650 2.352225 CGCACATCCTACCTCTATCAGC 60.352 54.545 0.00 0.00 0.00 4.26
642 651 2.630098 GCACATCCTACCTCTATCAGCA 59.370 50.000 0.00 0.00 0.00 4.41
643 652 3.553922 GCACATCCTACCTCTATCAGCAC 60.554 52.174 0.00 0.00 0.00 4.40
644 653 3.638627 CACATCCTACCTCTATCAGCACA 59.361 47.826 0.00 0.00 0.00 4.57
645 654 4.282957 CACATCCTACCTCTATCAGCACAT 59.717 45.833 0.00 0.00 0.00 3.21
646 655 4.904251 ACATCCTACCTCTATCAGCACATT 59.096 41.667 0.00 0.00 0.00 2.71
647 656 5.367937 ACATCCTACCTCTATCAGCACATTT 59.632 40.000 0.00 0.00 0.00 2.32
648 657 5.957771 TCCTACCTCTATCAGCACATTTT 57.042 39.130 0.00 0.00 0.00 1.82
649 658 5.674525 TCCTACCTCTATCAGCACATTTTG 58.325 41.667 0.00 0.00 0.00 2.44
650 659 5.425217 TCCTACCTCTATCAGCACATTTTGA 59.575 40.000 0.00 0.00 0.00 2.69
651 660 5.757320 CCTACCTCTATCAGCACATTTTGAG 59.243 44.000 0.00 0.00 0.00 3.02
652 661 5.426689 ACCTCTATCAGCACATTTTGAGA 57.573 39.130 0.00 0.00 0.00 3.27
653 662 5.426504 ACCTCTATCAGCACATTTTGAGAG 58.573 41.667 0.00 0.00 34.75 3.20
654 663 5.188555 ACCTCTATCAGCACATTTTGAGAGA 59.811 40.000 0.00 0.00 38.82 3.10
655 664 5.523188 CCTCTATCAGCACATTTTGAGAGAC 59.477 44.000 0.00 0.00 36.91 3.36
656 665 6.291648 TCTATCAGCACATTTTGAGAGACT 57.708 37.500 0.00 0.00 36.91 3.24
657 666 6.104665 TCTATCAGCACATTTTGAGAGACTG 58.895 40.000 0.00 0.00 36.91 3.51
658 667 4.341366 TCAGCACATTTTGAGAGACTGA 57.659 40.909 0.00 0.00 0.00 3.41
659 668 4.313282 TCAGCACATTTTGAGAGACTGAG 58.687 43.478 0.00 0.00 0.00 3.35
660 669 3.072944 AGCACATTTTGAGAGACTGAGC 58.927 45.455 0.00 0.00 0.00 4.26
661 670 2.161211 GCACATTTTGAGAGACTGAGCC 59.839 50.000 0.00 0.00 0.00 4.70
662 671 2.414481 CACATTTTGAGAGACTGAGCCG 59.586 50.000 0.00 0.00 0.00 5.52
663 672 2.300152 ACATTTTGAGAGACTGAGCCGA 59.700 45.455 0.00 0.00 0.00 5.54
664 673 2.440539 TTTTGAGAGACTGAGCCGAC 57.559 50.000 0.00 0.00 0.00 4.79
665 674 1.328279 TTTGAGAGACTGAGCCGACA 58.672 50.000 0.00 0.00 0.00 4.35
666 675 1.550327 TTGAGAGACTGAGCCGACAT 58.450 50.000 0.00 0.00 0.00 3.06
667 676 2.420058 TGAGAGACTGAGCCGACATA 57.580 50.000 0.00 0.00 0.00 2.29
668 677 2.937519 TGAGAGACTGAGCCGACATAT 58.062 47.619 0.00 0.00 0.00 1.78
669 678 2.881513 TGAGAGACTGAGCCGACATATC 59.118 50.000 0.00 0.00 0.00 1.63
670 679 2.881513 GAGAGACTGAGCCGACATATCA 59.118 50.000 0.00 0.00 0.00 2.15
671 680 3.495331 AGAGACTGAGCCGACATATCAT 58.505 45.455 0.00 0.00 0.00 2.45
672 681 3.505680 AGAGACTGAGCCGACATATCATC 59.494 47.826 0.00 0.00 0.00 2.92
673 682 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
674 683 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
675 684 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
676 685 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
677 686 4.236147 CTGAGCCGACATATCATCTTGAG 58.764 47.826 0.00 0.00 0.00 3.02
678 687 3.891366 TGAGCCGACATATCATCTTGAGA 59.109 43.478 0.00 0.00 0.00 3.27
679 688 4.525874 TGAGCCGACATATCATCTTGAGAT 59.474 41.667 0.00 0.00 34.56 2.75
680 689 5.011431 TGAGCCGACATATCATCTTGAGATT 59.989 40.000 0.00 0.00 31.21 2.40
681 690 5.862845 AGCCGACATATCATCTTGAGATTT 58.137 37.500 0.00 0.00 31.21 2.17
682 691 6.997655 AGCCGACATATCATCTTGAGATTTA 58.002 36.000 0.00 0.00 31.21 1.40
683 692 6.870965 AGCCGACATATCATCTTGAGATTTAC 59.129 38.462 0.00 0.00 31.21 2.01
684 693 6.183360 GCCGACATATCATCTTGAGATTTACG 60.183 42.308 0.00 0.00 31.21 3.18
685 694 7.084486 CCGACATATCATCTTGAGATTTACGA 58.916 38.462 0.00 0.00 31.21 3.43
686 695 7.595130 CCGACATATCATCTTGAGATTTACGAA 59.405 37.037 0.00 0.00 31.21 3.85
687 696 8.634265 CGACATATCATCTTGAGATTTACGAAG 58.366 37.037 0.00 0.00 31.21 3.79
688 697 9.469807 GACATATCATCTTGAGATTTACGAAGT 57.530 33.333 0.00 0.00 37.29 3.01
689 698 9.469807 ACATATCATCTTGAGATTTACGAAGTC 57.530 33.333 0.00 0.00 35.39 3.01
690 699 9.468532 CATATCATCTTGAGATTTACGAAGTCA 57.531 33.333 0.00 0.00 35.39 3.41
692 701 8.954950 ATCATCTTGAGATTTACGAAGTCATT 57.045 30.769 0.00 0.00 35.39 2.57
693 702 8.189709 TCATCTTGAGATTTACGAAGTCATTG 57.810 34.615 0.00 0.00 35.39 2.82
694 703 7.819415 TCATCTTGAGATTTACGAAGTCATTGT 59.181 33.333 0.00 0.00 35.39 2.71
695 704 9.087424 CATCTTGAGATTTACGAAGTCATTGTA 57.913 33.333 0.00 0.00 35.39 2.41
696 705 8.689251 TCTTGAGATTTACGAAGTCATTGTAG 57.311 34.615 0.00 0.00 43.93 2.74
697 706 6.887376 TGAGATTTACGAAGTCATTGTAGC 57.113 37.500 0.00 0.00 43.93 3.58
698 707 5.810587 TGAGATTTACGAAGTCATTGTAGCC 59.189 40.000 0.00 0.00 43.93 3.93
699 708 4.804139 AGATTTACGAAGTCATTGTAGCCG 59.196 41.667 0.00 0.00 43.93 5.52
700 709 1.917273 TACGAAGTCATTGTAGCCGC 58.083 50.000 0.00 0.00 43.93 6.53
701 710 0.037697 ACGAAGTCATTGTAGCCGCA 60.038 50.000 0.00 0.00 29.74 5.69
702 711 1.290203 CGAAGTCATTGTAGCCGCAT 58.710 50.000 0.00 0.00 0.00 4.73
703 712 1.258982 CGAAGTCATTGTAGCCGCATC 59.741 52.381 0.00 0.00 0.00 3.91
704 713 1.258982 GAAGTCATTGTAGCCGCATCG 59.741 52.381 0.00 0.00 0.00 3.84
705 714 0.175760 AGTCATTGTAGCCGCATCGT 59.824 50.000 0.00 0.00 0.00 3.73
706 715 0.577269 GTCATTGTAGCCGCATCGTC 59.423 55.000 0.00 0.00 0.00 4.20
707 716 0.869880 TCATTGTAGCCGCATCGTCG 60.870 55.000 0.00 0.00 0.00 5.12
708 717 1.141019 ATTGTAGCCGCATCGTCGT 59.859 52.632 0.00 0.00 0.00 4.34
709 718 0.870307 ATTGTAGCCGCATCGTCGTC 60.870 55.000 0.00 0.00 0.00 4.20
710 719 3.017314 GTAGCCGCATCGTCGTCG 61.017 66.667 0.00 0.00 38.55 5.12
731 740 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
732 741 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
733 742 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
734 743 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
735 744 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
736 745 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
737 746 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
738 747 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
739 748 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
740 749 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
741 750 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
742 751 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
743 752 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
754 763 2.109799 CGCATCGCCAGGAATCCT 59.890 61.111 0.00 0.00 0.00 3.24
768 777 5.796502 AGGAATCCTGAAATAAACCCAGA 57.203 39.130 0.00 0.00 29.57 3.86
769 778 6.152638 AGGAATCCTGAAATAAACCCAGAA 57.847 37.500 0.00 0.00 29.57 3.02
770 779 6.561294 AGGAATCCTGAAATAAACCCAGAAA 58.439 36.000 0.00 0.00 29.57 2.52
771 780 7.191918 AGGAATCCTGAAATAAACCCAGAAAT 58.808 34.615 0.00 0.00 29.57 2.17
772 781 8.343787 AGGAATCCTGAAATAAACCCAGAAATA 58.656 33.333 0.00 0.00 29.57 1.40
773 782 8.977412 GGAATCCTGAAATAAACCCAGAAATAA 58.023 33.333 0.00 0.00 0.00 1.40
776 785 7.781056 TCCTGAAATAAACCCAGAAATAATGC 58.219 34.615 0.00 0.00 0.00 3.56
777 786 6.697019 CCTGAAATAAACCCAGAAATAATGCG 59.303 38.462 0.00 0.00 0.00 4.73
778 787 7.397892 TGAAATAAACCCAGAAATAATGCGA 57.602 32.000 0.00 0.00 0.00 5.10
779 788 7.479980 TGAAATAAACCCAGAAATAATGCGAG 58.520 34.615 0.00 0.00 0.00 5.03
780 789 3.782889 AAACCCAGAAATAATGCGAGC 57.217 42.857 0.00 0.00 0.00 5.03
781 790 2.418368 ACCCAGAAATAATGCGAGCA 57.582 45.000 0.00 0.00 0.00 4.26
782 791 2.017049 ACCCAGAAATAATGCGAGCAC 58.983 47.619 0.00 0.00 0.00 4.40
783 792 1.334869 CCCAGAAATAATGCGAGCACC 59.665 52.381 0.00 0.00 0.00 5.01
784 793 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
785 794 2.423185 CCAGAAATAATGCGAGCACCAA 59.577 45.455 0.00 0.00 0.00 3.67
786 795 3.488047 CCAGAAATAATGCGAGCACCAAG 60.488 47.826 0.00 0.00 0.00 3.61
787 796 3.374988 CAGAAATAATGCGAGCACCAAGA 59.625 43.478 0.00 0.00 0.00 3.02
788 797 3.375299 AGAAATAATGCGAGCACCAAGAC 59.625 43.478 0.00 0.00 0.00 3.01
789 798 2.698855 ATAATGCGAGCACCAAGACT 57.301 45.000 0.00 0.00 0.00 3.24
790 799 2.472695 TAATGCGAGCACCAAGACTT 57.527 45.000 0.00 0.00 0.00 3.01
791 800 2.472695 AATGCGAGCACCAAGACTTA 57.527 45.000 0.00 0.00 0.00 2.24
792 801 2.472695 ATGCGAGCACCAAGACTTAA 57.527 45.000 0.00 0.00 0.00 1.85
793 802 1.795768 TGCGAGCACCAAGACTTAAG 58.204 50.000 0.00 0.00 0.00 1.85
794 803 0.444260 GCGAGCACCAAGACTTAAGC 59.556 55.000 1.29 0.00 0.00 3.09
795 804 1.079503 CGAGCACCAAGACTTAAGCC 58.920 55.000 1.29 0.00 0.00 4.35
796 805 1.338200 CGAGCACCAAGACTTAAGCCT 60.338 52.381 1.29 0.00 0.00 4.58
797 806 2.079925 GAGCACCAAGACTTAAGCCTG 58.920 52.381 1.29 0.00 0.00 4.85
798 807 1.168714 GCACCAAGACTTAAGCCTGG 58.831 55.000 13.79 13.79 0.00 4.45
799 808 1.545651 GCACCAAGACTTAAGCCTGGT 60.546 52.381 14.83 14.83 0.00 4.00
800 809 2.154462 CACCAAGACTTAAGCCTGGTG 58.846 52.381 25.14 25.14 39.19 4.17
801 810 1.073923 ACCAAGACTTAAGCCTGGTGG 59.926 52.381 18.23 13.31 0.00 4.61
802 811 1.614317 CCAAGACTTAAGCCTGGTGGG 60.614 57.143 1.29 0.00 38.36 4.61
811 820 2.203070 CCTGGTGGGCTGCGATAC 60.203 66.667 0.00 0.00 0.00 2.24
812 821 2.203070 CTGGTGGGCTGCGATACC 60.203 66.667 10.46 10.46 0.00 2.73
813 822 3.006133 TGGTGGGCTGCGATACCA 61.006 61.111 14.57 14.57 40.67 3.25
816 825 2.584064 TGGGCTGCGATACCACTG 59.416 61.111 0.00 0.00 0.00 3.66
817 826 2.290287 TGGGCTGCGATACCACTGT 61.290 57.895 0.00 0.00 0.00 3.55
818 827 1.521681 GGGCTGCGATACCACTGTC 60.522 63.158 0.00 0.00 0.00 3.51
819 828 1.521681 GGCTGCGATACCACTGTCC 60.522 63.158 0.00 0.00 0.00 4.02
820 829 1.521681 GCTGCGATACCACTGTCCC 60.522 63.158 0.00 0.00 0.00 4.46
821 830 1.961180 GCTGCGATACCACTGTCCCT 61.961 60.000 0.00 0.00 0.00 4.20
822 831 0.103208 CTGCGATACCACTGTCCCTC 59.897 60.000 0.00 0.00 0.00 4.30
823 832 0.324368 TGCGATACCACTGTCCCTCT 60.324 55.000 0.00 0.00 0.00 3.69
824 833 1.064240 TGCGATACCACTGTCCCTCTA 60.064 52.381 0.00 0.00 0.00 2.43
825 834 2.029623 GCGATACCACTGTCCCTCTAA 58.970 52.381 0.00 0.00 0.00 2.10
826 835 2.223758 GCGATACCACTGTCCCTCTAAC 60.224 54.545 0.00 0.00 0.00 2.34
827 836 2.361438 CGATACCACTGTCCCTCTAACC 59.639 54.545 0.00 0.00 0.00 2.85
828 837 3.371965 GATACCACTGTCCCTCTAACCA 58.628 50.000 0.00 0.00 0.00 3.67
829 838 2.112279 ACCACTGTCCCTCTAACCAA 57.888 50.000 0.00 0.00 0.00 3.67
830 839 1.697982 ACCACTGTCCCTCTAACCAAC 59.302 52.381 0.00 0.00 0.00 3.77
831 840 1.003233 CCACTGTCCCTCTAACCAACC 59.997 57.143 0.00 0.00 0.00 3.77
832 841 1.697432 CACTGTCCCTCTAACCAACCA 59.303 52.381 0.00 0.00 0.00 3.67
833 842 2.105821 CACTGTCCCTCTAACCAACCAA 59.894 50.000 0.00 0.00 0.00 3.67
834 843 2.986728 ACTGTCCCTCTAACCAACCAAT 59.013 45.455 0.00 0.00 0.00 3.16
835 844 3.009143 ACTGTCCCTCTAACCAACCAATC 59.991 47.826 0.00 0.00 0.00 2.67
836 845 2.983192 TGTCCCTCTAACCAACCAATCA 59.017 45.455 0.00 0.00 0.00 2.57
837 846 3.244770 TGTCCCTCTAACCAACCAATCAC 60.245 47.826 0.00 0.00 0.00 3.06
838 847 2.983192 TCCCTCTAACCAACCAATCACA 59.017 45.455 0.00 0.00 0.00 3.58
839 848 3.009033 TCCCTCTAACCAACCAATCACAG 59.991 47.826 0.00 0.00 0.00 3.66
840 849 3.244911 CCCTCTAACCAACCAATCACAGT 60.245 47.826 0.00 0.00 0.00 3.55
841 850 4.398319 CCTCTAACCAACCAATCACAGTT 58.602 43.478 0.00 0.00 0.00 3.16
842 851 4.216257 CCTCTAACCAACCAATCACAGTTG 59.784 45.833 0.00 0.00 42.41 3.16
848 857 3.773117 CCAATCACAGTTGGTTCGC 57.227 52.632 0.00 0.00 42.94 4.70
849 858 0.950836 CCAATCACAGTTGGTTCGCA 59.049 50.000 0.00 0.00 42.94 5.10
850 859 1.541147 CCAATCACAGTTGGTTCGCAT 59.459 47.619 0.00 0.00 42.94 4.73
851 860 2.030007 CCAATCACAGTTGGTTCGCATT 60.030 45.455 0.00 0.00 42.94 3.56
852 861 3.552684 CCAATCACAGTTGGTTCGCATTT 60.553 43.478 0.00 0.00 42.94 2.32
853 862 4.050553 CAATCACAGTTGGTTCGCATTTT 58.949 39.130 0.00 0.00 0.00 1.82
854 863 3.077229 TCACAGTTGGTTCGCATTTTG 57.923 42.857 0.00 0.00 0.00 2.44
855 864 2.126467 CACAGTTGGTTCGCATTTTGG 58.874 47.619 0.00 0.00 0.00 3.28
856 865 2.028130 ACAGTTGGTTCGCATTTTGGA 58.972 42.857 0.00 0.00 0.00 3.53
857 866 2.627699 ACAGTTGGTTCGCATTTTGGAT 59.372 40.909 0.00 0.00 0.00 3.41
858 867 3.069443 ACAGTTGGTTCGCATTTTGGATT 59.931 39.130 0.00 0.00 0.00 3.01
859 868 4.057432 CAGTTGGTTCGCATTTTGGATTT 58.943 39.130 0.00 0.00 0.00 2.17
860 869 4.150451 CAGTTGGTTCGCATTTTGGATTTC 59.850 41.667 0.00 0.00 0.00 2.17
861 870 4.039124 AGTTGGTTCGCATTTTGGATTTCT 59.961 37.500 0.00 0.00 0.00 2.52
862 871 3.911868 TGGTTCGCATTTTGGATTTCTG 58.088 40.909 0.00 0.00 0.00 3.02
863 872 3.320541 TGGTTCGCATTTTGGATTTCTGT 59.679 39.130 0.00 0.00 0.00 3.41
864 873 4.202202 TGGTTCGCATTTTGGATTTCTGTT 60.202 37.500 0.00 0.00 0.00 3.16
865 874 4.150451 GGTTCGCATTTTGGATTTCTGTTG 59.850 41.667 0.00 0.00 0.00 3.33
866 875 3.911868 TCGCATTTTGGATTTCTGTTGG 58.088 40.909 0.00 0.00 0.00 3.77
867 876 3.571828 TCGCATTTTGGATTTCTGTTGGA 59.428 39.130 0.00 0.00 0.00 3.53
868 877 4.038522 TCGCATTTTGGATTTCTGTTGGAA 59.961 37.500 0.00 0.00 0.00 3.53
869 878 4.386652 CGCATTTTGGATTTCTGTTGGAAG 59.613 41.667 0.00 0.00 35.16 3.46
870 879 4.692155 GCATTTTGGATTTCTGTTGGAAGG 59.308 41.667 0.00 0.00 35.16 3.46
871 880 5.742838 GCATTTTGGATTTCTGTTGGAAGGT 60.743 40.000 0.00 0.00 35.16 3.50
872 881 6.518200 GCATTTTGGATTTCTGTTGGAAGGTA 60.518 38.462 0.00 0.00 35.16 3.08
873 882 7.441017 CATTTTGGATTTCTGTTGGAAGGTAA 58.559 34.615 0.00 0.00 35.16 2.85
874 883 7.425224 TTTTGGATTTCTGTTGGAAGGTAAA 57.575 32.000 0.00 0.00 35.16 2.01
875 884 7.425224 TTTGGATTTCTGTTGGAAGGTAAAA 57.575 32.000 0.00 0.00 35.16 1.52
876 885 7.425224 TTGGATTTCTGTTGGAAGGTAAAAA 57.575 32.000 0.00 0.00 35.16 1.94
877 886 7.049799 TGGATTTCTGTTGGAAGGTAAAAAG 57.950 36.000 0.00 0.00 35.16 2.27
878 887 6.836527 TGGATTTCTGTTGGAAGGTAAAAAGA 59.163 34.615 0.00 0.00 35.16 2.52
879 888 7.343316 TGGATTTCTGTTGGAAGGTAAAAAGAA 59.657 33.333 0.00 0.00 35.16 2.52
880 889 8.367911 GGATTTCTGTTGGAAGGTAAAAAGAAT 58.632 33.333 0.00 0.00 35.16 2.40
881 890 9.764363 GATTTCTGTTGGAAGGTAAAAAGAATT 57.236 29.630 0.00 0.00 35.16 2.17
884 893 8.990163 TCTGTTGGAAGGTAAAAAGAATTAGT 57.010 30.769 0.00 0.00 0.00 2.24
885 894 9.063615 TCTGTTGGAAGGTAAAAAGAATTAGTC 57.936 33.333 0.00 0.00 0.00 2.59
886 895 8.990163 TGTTGGAAGGTAAAAAGAATTAGTCT 57.010 30.769 0.00 0.00 38.69 3.24
932 941 3.452627 TGTTTTAGGCCTTGCTTGGAAAA 59.547 39.130 12.58 6.94 0.00 2.29
1007 1016 0.394762 TAGCGCCTCTCCGGTAGAAA 60.395 55.000 2.29 0.00 39.83 2.52
1016 1025 2.202703 CGGTAGAAAGGACGGCGG 60.203 66.667 13.24 0.00 0.00 6.13
1030 1039 4.681978 GCGGGCGACAACTCCAGT 62.682 66.667 0.00 0.00 0.00 4.00
1031 1040 2.738521 CGGGCGACAACTCCAGTG 60.739 66.667 0.00 0.00 0.00 3.66
1037 1046 1.367840 GACAACTCCAGTGGTCGCT 59.632 57.895 9.54 0.00 39.00 4.93
1038 1047 0.601558 GACAACTCCAGTGGTCGCTA 59.398 55.000 9.54 0.00 39.00 4.26
1049 1058 1.289066 GGTCGCTATAGCCATCGCA 59.711 57.895 19.00 0.00 37.91 5.10
1139 1148 4.776322 TGCGGTGGAGGCCATTCG 62.776 66.667 5.01 2.30 35.28 3.34
1192 1201 2.158959 GCCGTCCTCATCGTTCACG 61.159 63.158 0.00 0.00 41.45 4.35
1518 1527 0.892358 AGGTCGCAGGTGAACTACGA 60.892 55.000 0.00 0.00 42.44 3.43
1523 1532 1.153823 CAGGTGAACTACGAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
1852 1873 1.738099 CGAGGCGGAGAACAAGGTG 60.738 63.158 0.00 0.00 0.00 4.00
1954 1975 2.727647 GCGATCTACAGCCTCGCG 60.728 66.667 0.00 0.00 46.74 5.87
2083 2104 2.874780 GCGCTGTACCACGTCTCG 60.875 66.667 0.00 0.00 0.00 4.04
2084 2105 2.202440 CGCTGTACCACGTCTCGG 60.202 66.667 0.00 0.00 0.00 4.63
2679 2700 4.202223 ACAAAGTCAAAAGTCTCCGCTCTA 60.202 41.667 0.00 0.00 0.00 2.43
2771 2847 2.352503 ACAAACTGCATTCGCCATTC 57.647 45.000 0.00 0.00 37.32 2.67
2903 2985 8.801715 AGAAACTAGTATGCAAACAATTTGTG 57.198 30.769 2.13 0.00 42.56 3.33
2905 2987 9.243637 GAAACTAGTATGCAAACAATTTGTGAA 57.756 29.630 2.13 0.00 42.56 3.18
2911 2993 5.776519 TGCAAACAATTTGTGAAACTGTC 57.223 34.783 2.13 0.00 42.56 3.51
2967 3050 2.444700 TTTTCCCGTCAGCCTCCGAC 62.445 60.000 0.00 0.00 0.00 4.79
3017 3100 3.374764 TGGTGCCTATCTTAGCTTCTGA 58.625 45.455 0.00 0.00 0.00 3.27
3035 3118 8.905850 AGCTTCTGAATTAGTACTTACTACTCC 58.094 37.037 0.00 0.00 38.43 3.85
3036 3119 8.136800 GCTTCTGAATTAGTACTTACTACTCCC 58.863 40.741 0.00 0.00 38.43 4.30
3037 3120 9.411189 CTTCTGAATTAGTACTTACTACTCCCT 57.589 37.037 0.00 0.00 38.43 4.20
3038 3121 8.977267 TCTGAATTAGTACTTACTACTCCCTC 57.023 38.462 0.00 0.00 38.43 4.30
3039 3122 7.997803 TCTGAATTAGTACTTACTACTCCCTCC 59.002 40.741 0.00 0.00 38.43 4.30
3040 3123 6.769822 TGAATTAGTACTTACTACTCCCTCCG 59.230 42.308 0.00 0.00 38.43 4.63
3041 3124 5.700402 TTAGTACTTACTACTCCCTCCGT 57.300 43.478 0.00 0.00 38.43 4.69
3042 3125 4.582973 AGTACTTACTACTCCCTCCGTT 57.417 45.455 0.00 0.00 34.13 4.44
3043 3126 4.522114 AGTACTTACTACTCCCTCCGTTC 58.478 47.826 0.00 0.00 34.13 3.95
3044 3127 2.363683 ACTTACTACTCCCTCCGTTCG 58.636 52.381 0.00 0.00 0.00 3.95
3045 3128 1.674962 CTTACTACTCCCTCCGTTCGG 59.325 57.143 4.74 4.74 0.00 4.30
3046 3129 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
3047 3130 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
3048 3131 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
3049 3132 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
3050 3133 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3051 3134 2.395619 ACTCCCTCCGTTCGGAATTAT 58.604 47.619 14.79 0.00 33.41 1.28
3052 3135 2.770232 ACTCCCTCCGTTCGGAATTATT 59.230 45.455 14.79 0.00 33.41 1.40
3053 3136 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
3054 3137 3.537580 TCCCTCCGTTCGGAATTATTTG 58.462 45.455 14.79 1.97 33.41 2.32
3055 3138 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
3056 3139 3.311596 CCCTCCGTTCGGAATTATTTGTC 59.688 47.826 14.79 0.00 33.41 3.18
3057 3140 4.189231 CCTCCGTTCGGAATTATTTGTCT 58.811 43.478 14.79 0.00 33.41 3.41
3058 3141 4.270325 CCTCCGTTCGGAATTATTTGTCTC 59.730 45.833 14.79 0.00 33.41 3.36
3059 3142 3.861113 TCCGTTCGGAATTATTTGTCTCG 59.139 43.478 11.66 0.00 0.00 4.04
3060 3143 3.861113 CCGTTCGGAATTATTTGTCTCGA 59.139 43.478 5.19 0.00 0.00 4.04
3061 3144 4.327898 CCGTTCGGAATTATTTGTCTCGAA 59.672 41.667 5.19 0.00 33.66 3.71
3062 3145 5.006358 CCGTTCGGAATTATTTGTCTCGAAT 59.994 40.000 5.19 0.00 37.46 3.34
3063 3146 6.199531 CCGTTCGGAATTATTTGTCTCGAATA 59.800 38.462 5.19 0.00 37.46 1.75
3064 3147 7.095774 CCGTTCGGAATTATTTGTCTCGAATAT 60.096 37.037 5.19 0.00 37.46 1.28
3065 3148 7.736017 CGTTCGGAATTATTTGTCTCGAATATG 59.264 37.037 0.00 0.00 37.46 1.78
3066 3149 7.652300 TCGGAATTATTTGTCTCGAATATGG 57.348 36.000 0.00 0.00 0.00 2.74
3067 3150 7.438564 TCGGAATTATTTGTCTCGAATATGGA 58.561 34.615 0.00 0.00 0.00 3.41
3068 3151 8.094548 TCGGAATTATTTGTCTCGAATATGGAT 58.905 33.333 0.00 0.00 0.00 3.41
3069 3152 8.171196 CGGAATTATTTGTCTCGAATATGGATG 58.829 37.037 0.00 0.00 0.00 3.51
3070 3153 9.003658 GGAATTATTTGTCTCGAATATGGATGT 57.996 33.333 0.00 0.00 0.00 3.06
3077 3160 8.863872 TTGTCTCGAATATGGATGTATCTAGA 57.136 34.615 0.00 0.00 0.00 2.43
3078 3161 8.863872 TGTCTCGAATATGGATGTATCTAGAA 57.136 34.615 0.00 0.00 0.00 2.10
3079 3162 8.731605 TGTCTCGAATATGGATGTATCTAGAAC 58.268 37.037 0.00 0.00 0.00 3.01
3080 3163 8.952278 GTCTCGAATATGGATGTATCTAGAACT 58.048 37.037 0.00 0.00 0.00 3.01
3122 3205 9.125026 ACATCCATTTCTATGACAAGTAATTCC 57.875 33.333 0.00 0.00 33.37 3.01
3123 3206 7.786178 TCCATTTCTATGACAAGTAATTCCG 57.214 36.000 0.00 0.00 33.37 4.30
3124 3207 7.561251 TCCATTTCTATGACAAGTAATTCCGA 58.439 34.615 0.00 0.00 33.37 4.55
3125 3208 8.044309 TCCATTTCTATGACAAGTAATTCCGAA 58.956 33.333 0.00 0.00 33.37 4.30
3126 3209 8.122952 CCATTTCTATGACAAGTAATTCCGAAC 58.877 37.037 0.00 0.00 33.37 3.95
3127 3210 8.664798 CATTTCTATGACAAGTAATTCCGAACA 58.335 33.333 0.00 0.00 33.37 3.18
3128 3211 7.827819 TTCTATGACAAGTAATTCCGAACAG 57.172 36.000 0.00 0.00 0.00 3.16
3129 3212 7.165460 TCTATGACAAGTAATTCCGAACAGA 57.835 36.000 0.00 0.00 0.00 3.41
3130 3213 7.608153 TCTATGACAAGTAATTCCGAACAGAA 58.392 34.615 0.00 0.00 0.00 3.02
3131 3214 6.727824 ATGACAAGTAATTCCGAACAGAAG 57.272 37.500 0.00 0.00 0.00 2.85
3132 3215 5.849510 TGACAAGTAATTCCGAACAGAAGA 58.150 37.500 0.00 0.00 0.00 2.87
3133 3216 6.285224 TGACAAGTAATTCCGAACAGAAGAA 58.715 36.000 0.00 0.00 0.00 2.52
3134 3217 6.423905 TGACAAGTAATTCCGAACAGAAGAAG 59.576 38.462 0.00 0.00 0.00 2.85
3163 3246 9.050601 CATTTAATCACTCCCTAATTCACTCTC 57.949 37.037 0.00 0.00 0.00 3.20
3190 3273 1.815003 CTGATTTCGGCTGCTTTTCCT 59.185 47.619 0.00 0.00 0.00 3.36
3246 3329 1.303799 CGCCTGATGCTTTGCTGACT 61.304 55.000 0.00 0.00 38.05 3.41
3274 3357 7.905604 CACACTTGTGTTATAAGATCCAGAA 57.094 36.000 3.39 0.00 40.96 3.02
3275 3358 7.743104 CACACTTGTGTTATAAGATCCAGAAC 58.257 38.462 3.39 0.00 40.96 3.01
3276 3359 7.387673 CACACTTGTGTTATAAGATCCAGAACA 59.612 37.037 3.39 1.99 40.96 3.18
3277 3360 7.387948 ACACTTGTGTTATAAGATCCAGAACAC 59.612 37.037 20.53 20.53 46.41 3.32
3278 3361 6.879458 ACTTGTGTTATAAGATCCAGAACACC 59.121 38.462 22.73 11.99 45.91 4.16
3279 3362 6.367374 TGTGTTATAAGATCCAGAACACCA 57.633 37.500 22.73 13.60 45.91 4.17
3306 3389 7.331440 TCACTTTACTTTCAAACTGTGTAACGA 59.669 33.333 0.00 0.00 42.39 3.85
3312 3395 6.685403 ACTTTCAAACTGTGTAACGAAATTCG 59.315 34.615 14.35 14.35 46.93 3.34
3318 3401 4.909305 ACTGTGTAACGAAATTCGCATTTG 59.091 37.500 15.90 3.01 45.12 2.32
3343 3426 3.168271 GCGATCAAGCTGCGTTCA 58.832 55.556 0.00 0.00 0.00 3.18
3348 3431 1.800586 GATCAAGCTGCGTTCAAGTCA 59.199 47.619 0.00 0.00 0.00 3.41
3351 3434 1.070309 CAAGCTGCGTTCAAGTCAGAC 60.070 52.381 0.00 0.00 0.00 3.51
3356 3439 0.939577 GCGTTCAAGTCAGACTCGCA 60.940 55.000 22.83 1.57 39.33 5.10
3364 3447 2.919228 AGTCAGACTCGCAACCTTTTT 58.081 42.857 0.00 0.00 0.00 1.94
3405 3488 8.913487 AATCCTTTTGAATTGAGAAAAGCATT 57.087 26.923 0.00 0.00 37.69 3.56
3426 3509 3.951775 TTTTGAACACAAGTTGCAGGT 57.048 38.095 1.81 0.00 38.30 4.00
3508 3591 1.675552 ACAACAGAAACCGGTCCAAG 58.324 50.000 8.04 0.85 0.00 3.61
3517 3600 1.426751 ACCGGTCCAAGGTCAACTAA 58.573 50.000 0.00 0.00 37.44 2.24
3523 3606 4.323257 CGGTCCAAGGTCAACTAAAGGTAT 60.323 45.833 0.00 0.00 0.00 2.73
3530 3613 9.462606 CCAAGGTCAACTAAAGGTATTCTATTT 57.537 33.333 0.00 0.00 0.00 1.40
3533 3616 9.892130 AGGTCAACTAAAGGTATTCTATTTCAG 57.108 33.333 0.00 0.00 0.00 3.02
3534 3617 9.668497 GGTCAACTAAAGGTATTCTATTTCAGT 57.332 33.333 0.00 0.00 0.00 3.41
3543 3626 8.709272 AGGTATTCTATTTCAGTAGTACTCCC 57.291 38.462 0.00 0.00 0.00 4.30
3544 3627 8.512813 AGGTATTCTATTTCAGTAGTACTCCCT 58.487 37.037 0.00 0.00 0.00 4.20
3545 3628 8.795513 GGTATTCTATTTCAGTAGTACTCCCTC 58.204 40.741 0.00 0.00 0.00 4.30
3546 3629 7.842887 ATTCTATTTCAGTAGTACTCCCTCC 57.157 40.000 0.00 0.00 0.00 4.30
3547 3630 5.374921 TCTATTTCAGTAGTACTCCCTCCG 58.625 45.833 0.00 0.00 0.00 4.63
3548 3631 3.446442 TTTCAGTAGTACTCCCTCCGT 57.554 47.619 0.00 0.00 0.00 4.69
3549 3632 2.706339 TCAGTAGTACTCCCTCCGTC 57.294 55.000 0.00 0.00 0.00 4.79
3550 3633 1.211457 TCAGTAGTACTCCCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
3551 3634 0.179936 AGTAGTACTCCCTCCGTCCG 59.820 60.000 0.00 0.00 0.00 4.79
3552 3635 0.179000 GTAGTACTCCCTCCGTCCGA 59.821 60.000 0.00 0.00 0.00 4.55
3553 3636 0.911769 TAGTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
3554 3637 0.038744 AGTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
3555 3638 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
3556 3639 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
3557 3640 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
3558 3641 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
3559 3642 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
3560 3643 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
3561 3644 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3562 3645 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3563 3646 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3564 3647 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3565 3648 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
3566 3649 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
3567 3650 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
3568 3651 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
3569 3652 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
3570 3653 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
3571 3654 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
3572 3655 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
3573 3656 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
3574 3657 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
3575 3658 8.638565 CCGAAAATACTTGTCATCAAAATGAAC 58.361 33.333 0.00 0.00 43.42 3.18
3576 3659 9.179552 CGAAAATACTTGTCATCAAAATGAACA 57.820 29.630 0.00 0.00 43.42 3.18
3582 3665 8.776376 ACTTGTCATCAAAATGAACAAAAAGT 57.224 26.923 0.87 0.00 43.42 2.66
3583 3666 8.872845 ACTTGTCATCAAAATGAACAAAAAGTC 58.127 29.630 0.87 0.00 43.42 3.01
3584 3667 7.769272 TGTCATCAAAATGAACAAAAAGTCC 57.231 32.000 0.00 0.00 43.42 3.85
3585 3668 7.555087 TGTCATCAAAATGAACAAAAAGTCCT 58.445 30.769 0.00 0.00 43.42 3.85
3586 3669 7.706179 TGTCATCAAAATGAACAAAAAGTCCTC 59.294 33.333 0.00 0.00 43.42 3.71
3587 3670 7.922811 GTCATCAAAATGAACAAAAAGTCCTCT 59.077 33.333 0.00 0.00 43.42 3.69
3588 3671 8.477256 TCATCAAAATGAACAAAAAGTCCTCTT 58.523 29.630 0.00 0.00 38.97 2.85
3589 3672 9.101655 CATCAAAATGAACAAAAAGTCCTCTTT 57.898 29.630 0.00 0.00 39.02 2.52
3606 3689 9.300681 AGTCCTCTTTTATTCATTTTGATGACA 57.699 29.630 0.00 0.00 0.00 3.58
3607 3690 9.912634 GTCCTCTTTTATTCATTTTGATGACAA 57.087 29.630 0.00 0.00 0.00 3.18
3609 3692 9.918630 CCTCTTTTATTCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
3617 3700 9.865321 ATTCATTTTGATGACAAGTATTTCTGG 57.135 29.630 0.00 0.00 37.32 3.86
3618 3701 8.634335 TCATTTTGATGACAAGTATTTCTGGA 57.366 30.769 0.00 0.00 37.32 3.86
3619 3702 8.514594 TCATTTTGATGACAAGTATTTCTGGAC 58.485 33.333 0.00 0.00 37.32 4.02
3620 3703 6.480524 TTTGATGACAAGTATTTCTGGACG 57.519 37.500 0.00 0.00 37.32 4.79
3621 3704 4.503910 TGATGACAAGTATTTCTGGACGG 58.496 43.478 0.00 0.00 0.00 4.79
3622 3705 4.221924 TGATGACAAGTATTTCTGGACGGA 59.778 41.667 0.00 0.00 0.00 4.69
3623 3706 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
3624 3707 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
3625 3708 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
3766 3853 7.154668 TCTAATAGAGTACGAACTAACGTCG 57.845 40.000 0.00 0.00 45.32 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.118629 TCCAAGAGATCAATCAAGGGACG 60.119 47.826 0.00 0.00 0.00 4.79
10 11 4.494091 TCCAAGAGATCAATCAAGGGAC 57.506 45.455 0.00 0.00 0.00 4.46
25 26 4.012374 GGAGCATGTTCTCAATTCCAAGA 58.988 43.478 9.57 0.00 34.84 3.02
30 31 3.065095 GCAGAGGAGCATGTTCTCAATTC 59.935 47.826 9.57 1.30 34.84 2.17
33 34 1.348696 TGCAGAGGAGCATGTTCTCAA 59.651 47.619 9.57 0.00 40.11 3.02
58 59 5.707931 TGCAATCGTTTATTGAAGATGCAA 58.292 33.333 0.00 0.00 46.81 4.08
134 135 6.317893 ACACAAATTTCTTCTACACCGAGTTT 59.682 34.615 0.00 0.00 0.00 2.66
135 136 5.820947 ACACAAATTTCTTCTACACCGAGTT 59.179 36.000 0.00 0.00 0.00 3.01
139 140 5.050634 TCGAACACAAATTTCTTCTACACCG 60.051 40.000 0.00 0.00 0.00 4.94
152 153 5.902613 ACATGATGGATTCGAACACAAAT 57.097 34.783 0.00 0.00 0.00 2.32
154 155 5.459768 CAAACATGATGGATTCGAACACAA 58.540 37.500 0.00 0.00 0.00 3.33
160 161 2.945008 GGAGCAAACATGATGGATTCGA 59.055 45.455 0.00 0.00 0.00 3.71
171 172 6.959639 TTTTTCTTAGTCTGGAGCAAACAT 57.040 33.333 0.00 0.00 0.00 2.71
223 226 2.281484 GCCCAACAAGTGCTCGGA 60.281 61.111 0.00 0.00 0.00 4.55
267 270 3.717294 AAGTACCGCCTGCCCCTG 61.717 66.667 0.00 0.00 0.00 4.45
268 271 3.717294 CAAGTACCGCCTGCCCCT 61.717 66.667 0.00 0.00 0.00 4.79
283 288 3.950794 CTTGGTCTAGCCGCCGCAA 62.951 63.158 0.00 0.00 41.21 4.85
289 294 1.134670 CCTTCTTCCTTGGTCTAGCCG 60.135 57.143 0.00 0.00 41.21 5.52
293 298 2.834113 CCTCCCTTCTTCCTTGGTCTA 58.166 52.381 0.00 0.00 0.00 2.59
300 305 0.836400 TTCACGCCTCCCTTCTTCCT 60.836 55.000 0.00 0.00 0.00 3.36
318 323 4.621087 GCCCACCCCCTGCTTGTT 62.621 66.667 0.00 0.00 0.00 2.83
325 330 3.341629 CACAGATGCCCACCCCCT 61.342 66.667 0.00 0.00 0.00 4.79
326 331 3.661648 ACACAGATGCCCACCCCC 61.662 66.667 0.00 0.00 0.00 5.40
336 341 2.665000 CCACCGCTCCACACAGAT 59.335 61.111 0.00 0.00 0.00 2.90
405 410 1.320344 CGACCGTCTTCATCCTCCCA 61.320 60.000 0.00 0.00 0.00 4.37
425 430 1.268283 AAGTGCCTGCCTCCTAGGAC 61.268 60.000 7.62 0.00 37.67 3.85
426 431 1.081092 AAGTGCCTGCCTCCTAGGA 59.919 57.895 11.98 11.98 37.67 2.94
526 532 7.360113 ACAGAAACCCAAAACATTCACTATT 57.640 32.000 0.00 0.00 0.00 1.73
527 533 6.976934 ACAGAAACCCAAAACATTCACTAT 57.023 33.333 0.00 0.00 0.00 2.12
552 561 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
553 562 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
554 563 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
555 564 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
556 565 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
557 566 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
558 567 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
559 568 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
560 569 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
561 570 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
562 571 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
563 572 1.078759 ATGAGCGCTTGCGTCTGTAC 61.079 55.000 13.26 0.00 45.69 2.90
564 573 0.454196 TATGAGCGCTTGCGTCTGTA 59.546 50.000 13.26 6.26 45.69 2.74
565 574 1.078759 GTATGAGCGCTTGCGTCTGT 61.079 55.000 13.26 7.66 45.69 3.41
566 575 1.078201 TGTATGAGCGCTTGCGTCTG 61.078 55.000 13.26 0.00 45.69 3.51
567 576 0.179100 ATGTATGAGCGCTTGCGTCT 60.179 50.000 13.26 13.17 45.69 4.18
568 577 1.190323 GTATGTATGAGCGCTTGCGTC 59.810 52.381 13.26 12.36 45.69 5.19
569 578 1.209128 GTATGTATGAGCGCTTGCGT 58.791 50.000 13.26 3.97 45.69 5.24
570 579 0.159554 CGTATGTATGAGCGCTTGCG 59.840 55.000 13.26 10.90 45.69 4.85
571 580 0.111089 GCGTATGTATGAGCGCTTGC 60.111 55.000 13.26 0.00 45.48 4.01
576 585 3.119628 GTGTATGTGCGTATGTATGAGCG 59.880 47.826 0.00 0.00 0.00 5.03
577 586 4.299155 AGTGTATGTGCGTATGTATGAGC 58.701 43.478 0.00 0.00 0.00 4.26
578 587 5.519722 TGAGTGTATGTGCGTATGTATGAG 58.480 41.667 0.00 0.00 0.00 2.90
579 588 5.508200 TGAGTGTATGTGCGTATGTATGA 57.492 39.130 0.00 0.00 0.00 2.15
580 589 6.861055 TGTATGAGTGTATGTGCGTATGTATG 59.139 38.462 0.00 0.00 0.00 2.39
581 590 6.977213 TGTATGAGTGTATGTGCGTATGTAT 58.023 36.000 0.00 0.00 0.00 2.29
582 591 6.380095 TGTATGAGTGTATGTGCGTATGTA 57.620 37.500 0.00 0.00 0.00 2.29
583 592 5.257082 TGTATGAGTGTATGTGCGTATGT 57.743 39.130 0.00 0.00 0.00 2.29
584 593 7.754924 TCATATGTATGAGTGTATGTGCGTATG 59.245 37.037 1.90 0.00 37.76 2.39
585 594 7.826690 TCATATGTATGAGTGTATGTGCGTAT 58.173 34.615 1.90 0.00 37.76 3.06
586 595 7.209471 TCATATGTATGAGTGTATGTGCGTA 57.791 36.000 1.90 0.00 37.76 4.42
587 596 6.084326 TCATATGTATGAGTGTATGTGCGT 57.916 37.500 1.90 0.00 37.76 5.24
588 597 7.450627 CATTCATATGTATGAGTGTATGTGCG 58.549 38.462 15.22 0.00 42.20 5.34
589 598 7.095102 TGCATTCATATGTATGAGTGTATGTGC 60.095 37.037 22.34 8.02 46.15 4.57
590 599 8.225777 GTGCATTCATATGTATGAGTGTATGTG 58.774 37.037 22.34 0.00 46.15 3.21
591 600 7.933033 TGTGCATTCATATGTATGAGTGTATGT 59.067 33.333 22.34 0.00 46.15 2.29
592 601 8.225777 GTGTGCATTCATATGTATGAGTGTATG 58.774 37.037 22.34 13.78 46.15 2.39
593 602 7.933033 TGTGTGCATTCATATGTATGAGTGTAT 59.067 33.333 22.34 4.14 46.15 2.29
594 603 7.224557 GTGTGTGCATTCATATGTATGAGTGTA 59.775 37.037 22.34 15.53 46.15 2.90
595 604 6.037500 GTGTGTGCATTCATATGTATGAGTGT 59.962 38.462 22.34 4.14 46.15 3.55
596 605 6.424683 GTGTGTGCATTCATATGTATGAGTG 58.575 40.000 22.34 16.64 46.75 3.51
597 606 5.234972 CGTGTGTGCATTCATATGTATGAGT 59.765 40.000 22.34 0.00 42.99 3.41
598 607 5.673029 CGTGTGTGCATTCATATGTATGAG 58.327 41.667 22.34 1.70 42.99 2.90
599 608 4.024977 GCGTGTGTGCATTCATATGTATGA 60.025 41.667 22.34 8.00 36.53 2.15
600 609 4.213674 GCGTGTGTGCATTCATATGTATG 58.786 43.478 15.82 15.82 34.12 2.39
601 610 3.876320 TGCGTGTGTGCATTCATATGTAT 59.124 39.130 1.90 0.00 40.62 2.29
602 611 3.265791 TGCGTGTGTGCATTCATATGTA 58.734 40.909 1.90 0.00 40.62 2.29
603 612 2.083002 TGCGTGTGTGCATTCATATGT 58.917 42.857 1.90 0.00 40.62 2.29
604 613 2.828874 TGCGTGTGTGCATTCATATG 57.171 45.000 0.00 0.00 40.62 1.78
612 621 0.948623 GTAGGATGTGCGTGTGTGCA 60.949 55.000 0.00 0.00 43.95 4.57
613 622 1.635663 GGTAGGATGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
614 623 0.037326 AGGTAGGATGTGCGTGTGTG 60.037 55.000 0.00 0.00 0.00 3.82
615 624 0.246635 GAGGTAGGATGTGCGTGTGT 59.753 55.000 0.00 0.00 0.00 3.72
616 625 0.532573 AGAGGTAGGATGTGCGTGTG 59.467 55.000 0.00 0.00 0.00 3.82
617 626 2.139323 TAGAGGTAGGATGTGCGTGT 57.861 50.000 0.00 0.00 0.00 4.49
618 627 2.623416 TGATAGAGGTAGGATGTGCGTG 59.377 50.000 0.00 0.00 0.00 5.34
619 628 2.887783 CTGATAGAGGTAGGATGTGCGT 59.112 50.000 0.00 0.00 0.00 5.24
620 629 2.352225 GCTGATAGAGGTAGGATGTGCG 60.352 54.545 0.00 0.00 0.00 5.34
621 630 2.630098 TGCTGATAGAGGTAGGATGTGC 59.370 50.000 0.00 0.00 0.00 4.57
622 631 3.638627 TGTGCTGATAGAGGTAGGATGTG 59.361 47.826 0.00 0.00 0.00 3.21
623 632 3.916035 TGTGCTGATAGAGGTAGGATGT 58.084 45.455 0.00 0.00 0.00 3.06
624 633 5.480642 AATGTGCTGATAGAGGTAGGATG 57.519 43.478 0.00 0.00 0.00 3.51
625 634 6.100279 TCAAAATGTGCTGATAGAGGTAGGAT 59.900 38.462 0.00 0.00 0.00 3.24
626 635 5.425217 TCAAAATGTGCTGATAGAGGTAGGA 59.575 40.000 0.00 0.00 0.00 2.94
627 636 5.674525 TCAAAATGTGCTGATAGAGGTAGG 58.325 41.667 0.00 0.00 0.00 3.18
628 637 6.577103 TCTCAAAATGTGCTGATAGAGGTAG 58.423 40.000 0.00 0.00 0.00 3.18
629 638 6.381133 TCTCTCAAAATGTGCTGATAGAGGTA 59.619 38.462 0.00 0.00 0.00 3.08
630 639 5.188555 TCTCTCAAAATGTGCTGATAGAGGT 59.811 40.000 0.00 0.00 0.00 3.85
631 640 5.523188 GTCTCTCAAAATGTGCTGATAGAGG 59.477 44.000 0.00 0.00 28.70 3.69
632 641 6.256104 CAGTCTCTCAAAATGTGCTGATAGAG 59.744 42.308 0.00 0.00 28.70 2.43
633 642 6.071165 TCAGTCTCTCAAAATGTGCTGATAGA 60.071 38.462 0.00 0.00 0.00 1.98
634 643 6.104665 TCAGTCTCTCAAAATGTGCTGATAG 58.895 40.000 0.00 0.00 0.00 2.08
635 644 6.041423 TCAGTCTCTCAAAATGTGCTGATA 57.959 37.500 0.00 0.00 0.00 2.15
636 645 4.903054 TCAGTCTCTCAAAATGTGCTGAT 58.097 39.130 0.00 0.00 0.00 2.90
637 646 4.313282 CTCAGTCTCTCAAAATGTGCTGA 58.687 43.478 0.00 0.00 0.00 4.26
638 647 3.120269 GCTCAGTCTCTCAAAATGTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
639 648 3.072944 GCTCAGTCTCTCAAAATGTGCT 58.927 45.455 0.00 0.00 0.00 4.40
640 649 2.161211 GGCTCAGTCTCTCAAAATGTGC 59.839 50.000 0.00 0.00 0.00 4.57
641 650 2.414481 CGGCTCAGTCTCTCAAAATGTG 59.586 50.000 0.00 0.00 0.00 3.21
642 651 2.300152 TCGGCTCAGTCTCTCAAAATGT 59.700 45.455 0.00 0.00 0.00 2.71
643 652 2.670414 GTCGGCTCAGTCTCTCAAAATG 59.330 50.000 0.00 0.00 0.00 2.32
644 653 2.300152 TGTCGGCTCAGTCTCTCAAAAT 59.700 45.455 0.00 0.00 0.00 1.82
645 654 1.686587 TGTCGGCTCAGTCTCTCAAAA 59.313 47.619 0.00 0.00 0.00 2.44
646 655 1.328279 TGTCGGCTCAGTCTCTCAAA 58.672 50.000 0.00 0.00 0.00 2.69
647 656 1.550327 ATGTCGGCTCAGTCTCTCAA 58.450 50.000 0.00 0.00 0.00 3.02
648 657 2.420058 TATGTCGGCTCAGTCTCTCA 57.580 50.000 0.00 0.00 0.00 3.27
649 658 2.881513 TGATATGTCGGCTCAGTCTCTC 59.118 50.000 0.00 0.00 0.00 3.20
650 659 2.937519 TGATATGTCGGCTCAGTCTCT 58.062 47.619 0.00 0.00 0.00 3.10
651 660 3.505680 AGATGATATGTCGGCTCAGTCTC 59.494 47.826 0.00 0.00 0.00 3.36
652 661 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
653 662 3.932545 AGATGATATGTCGGCTCAGTC 57.067 47.619 0.00 0.00 0.00 3.51
654 663 3.638627 TCAAGATGATATGTCGGCTCAGT 59.361 43.478 0.00 0.00 0.00 3.41
655 664 4.022503 TCTCAAGATGATATGTCGGCTCAG 60.023 45.833 0.00 0.00 0.00 3.35
656 665 3.891366 TCTCAAGATGATATGTCGGCTCA 59.109 43.478 0.00 0.00 0.00 4.26
657 666 4.511617 TCTCAAGATGATATGTCGGCTC 57.488 45.455 0.00 0.00 0.00 4.70
658 667 5.480642 AATCTCAAGATGATATGTCGGCT 57.519 39.130 0.00 0.00 34.49 5.52
659 668 6.183360 CGTAAATCTCAAGATGATATGTCGGC 60.183 42.308 0.00 0.00 34.49 5.54
660 669 7.084486 TCGTAAATCTCAAGATGATATGTCGG 58.916 38.462 0.00 0.00 34.49 4.79
661 670 8.507470 TTCGTAAATCTCAAGATGATATGTCG 57.493 34.615 0.00 0.00 34.49 4.35
662 671 9.469807 ACTTCGTAAATCTCAAGATGATATGTC 57.530 33.333 0.00 0.00 34.49 3.06
663 672 9.469807 GACTTCGTAAATCTCAAGATGATATGT 57.530 33.333 0.00 0.00 34.49 2.29
664 673 9.468532 TGACTTCGTAAATCTCAAGATGATATG 57.531 33.333 0.00 0.00 34.49 1.78
667 676 8.824781 CAATGACTTCGTAAATCTCAAGATGAT 58.175 33.333 0.00 0.00 34.49 2.45
668 677 7.819415 ACAATGACTTCGTAAATCTCAAGATGA 59.181 33.333 0.00 0.00 34.49 2.92
669 678 7.968246 ACAATGACTTCGTAAATCTCAAGATG 58.032 34.615 0.00 0.00 34.49 2.90
670 679 9.307121 CTACAATGACTTCGTAAATCTCAAGAT 57.693 33.333 0.00 0.00 36.07 2.40
671 680 7.275779 GCTACAATGACTTCGTAAATCTCAAGA 59.724 37.037 0.00 0.00 0.00 3.02
672 681 7.394872 GCTACAATGACTTCGTAAATCTCAAG 58.605 38.462 0.00 0.00 0.00 3.02
673 682 6.312918 GGCTACAATGACTTCGTAAATCTCAA 59.687 38.462 0.00 0.00 0.00 3.02
674 683 5.810587 GGCTACAATGACTTCGTAAATCTCA 59.189 40.000 0.00 0.00 0.00 3.27
675 684 5.051641 CGGCTACAATGACTTCGTAAATCTC 60.052 44.000 0.00 0.00 0.00 2.75
676 685 4.804139 CGGCTACAATGACTTCGTAAATCT 59.196 41.667 0.00 0.00 0.00 2.40
677 686 4.550255 GCGGCTACAATGACTTCGTAAATC 60.550 45.833 0.00 0.00 0.00 2.17
678 687 3.308866 GCGGCTACAATGACTTCGTAAAT 59.691 43.478 0.00 0.00 0.00 1.40
679 688 2.669434 GCGGCTACAATGACTTCGTAAA 59.331 45.455 0.00 0.00 0.00 2.01
680 689 2.264813 GCGGCTACAATGACTTCGTAA 58.735 47.619 0.00 0.00 0.00 3.18
681 690 1.202817 TGCGGCTACAATGACTTCGTA 59.797 47.619 0.00 0.00 0.00 3.43
682 691 0.037697 TGCGGCTACAATGACTTCGT 60.038 50.000 0.00 0.00 0.00 3.85
683 692 1.258982 GATGCGGCTACAATGACTTCG 59.741 52.381 0.00 0.00 0.00 3.79
684 693 1.258982 CGATGCGGCTACAATGACTTC 59.741 52.381 0.00 0.00 0.00 3.01
685 694 1.290203 CGATGCGGCTACAATGACTT 58.710 50.000 0.00 0.00 0.00 3.01
686 695 0.175760 ACGATGCGGCTACAATGACT 59.824 50.000 0.00 0.00 0.00 3.41
687 696 0.577269 GACGATGCGGCTACAATGAC 59.423 55.000 0.00 0.00 0.00 3.06
688 697 0.869880 CGACGATGCGGCTACAATGA 60.870 55.000 0.00 0.00 29.68 2.57
689 698 1.145759 ACGACGATGCGGCTACAATG 61.146 55.000 0.00 0.00 35.12 2.82
690 699 0.870307 GACGACGATGCGGCTACAAT 60.870 55.000 0.00 0.00 36.09 2.71
691 700 1.515519 GACGACGATGCGGCTACAA 60.516 57.895 0.00 0.00 36.09 2.41
692 701 2.101575 GACGACGATGCGGCTACA 59.898 61.111 0.00 0.00 36.09 2.74
693 702 3.017314 CGACGACGATGCGGCTAC 61.017 66.667 0.00 0.00 42.66 3.58
694 703 3.197092 TCGACGACGATGCGGCTA 61.197 61.111 5.75 0.00 43.81 3.93
715 724 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
716 725 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
717 726 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
718 727 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
719 728 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
720 729 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
721 730 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
722 731 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
723 732 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
724 733 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
725 734 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
726 735 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
737 746 2.109799 AGGATTCCTGGCGATGCG 59.890 61.111 3.86 0.00 29.57 4.73
746 755 5.796502 TCTGGGTTTATTTCAGGATTCCT 57.203 39.130 0.00 0.00 0.00 3.36
747 756 6.850752 TTTCTGGGTTTATTTCAGGATTCC 57.149 37.500 0.00 0.00 0.00 3.01
750 759 8.424133 GCATTATTTCTGGGTTTATTTCAGGAT 58.576 33.333 0.00 0.00 0.00 3.24
751 760 7.416213 CGCATTATTTCTGGGTTTATTTCAGGA 60.416 37.037 0.00 0.00 0.00 3.86
752 761 6.697019 CGCATTATTTCTGGGTTTATTTCAGG 59.303 38.462 0.00 0.00 0.00 3.86
753 762 7.479980 TCGCATTATTTCTGGGTTTATTTCAG 58.520 34.615 0.00 0.00 0.00 3.02
754 763 7.397892 TCGCATTATTTCTGGGTTTATTTCA 57.602 32.000 0.00 0.00 0.00 2.69
755 764 6.417930 GCTCGCATTATTTCTGGGTTTATTTC 59.582 38.462 0.00 0.00 0.00 2.17
756 765 6.127479 TGCTCGCATTATTTCTGGGTTTATTT 60.127 34.615 0.00 0.00 0.00 1.40
757 766 5.359576 TGCTCGCATTATTTCTGGGTTTATT 59.640 36.000 0.00 0.00 0.00 1.40
758 767 4.887071 TGCTCGCATTATTTCTGGGTTTAT 59.113 37.500 0.00 0.00 0.00 1.40
759 768 4.095782 GTGCTCGCATTATTTCTGGGTTTA 59.904 41.667 0.00 0.00 0.00 2.01
760 769 3.088532 TGCTCGCATTATTTCTGGGTTT 58.911 40.909 0.00 0.00 0.00 3.27
761 770 2.423538 GTGCTCGCATTATTTCTGGGTT 59.576 45.455 0.00 0.00 0.00 4.11
762 771 2.017049 GTGCTCGCATTATTTCTGGGT 58.983 47.619 0.00 0.00 0.00 4.51
763 772 1.334869 GGTGCTCGCATTATTTCTGGG 59.665 52.381 0.00 0.00 0.00 4.45
764 773 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
765 774 3.374988 TCTTGGTGCTCGCATTATTTCTG 59.625 43.478 0.00 0.00 0.00 3.02
766 775 3.375299 GTCTTGGTGCTCGCATTATTTCT 59.625 43.478 0.00 0.00 0.00 2.52
767 776 3.375299 AGTCTTGGTGCTCGCATTATTTC 59.625 43.478 0.00 0.00 0.00 2.17
768 777 3.347216 AGTCTTGGTGCTCGCATTATTT 58.653 40.909 0.00 0.00 0.00 1.40
769 778 2.991250 AGTCTTGGTGCTCGCATTATT 58.009 42.857 0.00 0.00 0.00 1.40
770 779 2.698855 AGTCTTGGTGCTCGCATTAT 57.301 45.000 0.00 0.00 0.00 1.28
771 780 2.472695 AAGTCTTGGTGCTCGCATTA 57.527 45.000 0.00 0.00 0.00 1.90
772 781 2.472695 TAAGTCTTGGTGCTCGCATT 57.527 45.000 0.00 0.00 0.00 3.56
773 782 2.350522 CTTAAGTCTTGGTGCTCGCAT 58.649 47.619 0.00 0.00 0.00 4.73
774 783 1.795768 CTTAAGTCTTGGTGCTCGCA 58.204 50.000 0.00 0.00 0.00 5.10
775 784 0.444260 GCTTAAGTCTTGGTGCTCGC 59.556 55.000 4.02 0.00 0.00 5.03
776 785 1.079503 GGCTTAAGTCTTGGTGCTCG 58.920 55.000 4.02 0.00 0.00 5.03
777 786 2.079925 CAGGCTTAAGTCTTGGTGCTC 58.920 52.381 6.92 0.00 0.00 4.26
778 787 1.271597 CCAGGCTTAAGTCTTGGTGCT 60.272 52.381 6.92 0.00 0.00 4.40
779 788 1.168714 CCAGGCTTAAGTCTTGGTGC 58.831 55.000 6.92 0.00 0.00 5.01
780 789 2.154462 CACCAGGCTTAAGTCTTGGTG 58.846 52.381 28.93 28.93 40.08 4.17
781 790 1.073923 CCACCAGGCTTAAGTCTTGGT 59.926 52.381 20.38 20.38 33.57 3.67
782 791 1.614317 CCCACCAGGCTTAAGTCTTGG 60.614 57.143 17.55 17.55 29.67 3.61
783 792 1.826385 CCCACCAGGCTTAAGTCTTG 58.174 55.000 6.92 6.75 0.00 3.02
794 803 2.203070 GTATCGCAGCCCACCAGG 60.203 66.667 0.00 0.00 39.47 4.45
795 804 2.203070 GGTATCGCAGCCCACCAG 60.203 66.667 0.74 0.00 0.00 4.00
796 805 3.006133 TGGTATCGCAGCCCACCA 61.006 61.111 3.75 3.75 38.72 4.17
797 806 2.513897 GTGGTATCGCAGCCCACC 60.514 66.667 7.20 3.03 42.27 4.61
799 808 2.238847 GACAGTGGTATCGCAGCCCA 62.239 60.000 0.00 0.00 0.00 5.36
800 809 1.521681 GACAGTGGTATCGCAGCCC 60.522 63.158 0.00 0.00 0.00 5.19
801 810 1.521681 GGACAGTGGTATCGCAGCC 60.522 63.158 0.00 0.00 0.00 4.85
802 811 1.521681 GGGACAGTGGTATCGCAGC 60.522 63.158 0.00 0.00 0.00 5.25
803 812 0.103208 GAGGGACAGTGGTATCGCAG 59.897 60.000 0.00 0.00 0.00 5.18
804 813 0.324368 AGAGGGACAGTGGTATCGCA 60.324 55.000 0.00 0.00 0.00 5.10
805 814 1.688772 TAGAGGGACAGTGGTATCGC 58.311 55.000 0.00 0.00 0.00 4.58
806 815 2.361438 GGTTAGAGGGACAGTGGTATCG 59.639 54.545 0.00 0.00 0.00 2.92
807 816 3.371965 TGGTTAGAGGGACAGTGGTATC 58.628 50.000 0.00 0.00 0.00 2.24
808 817 3.484953 TGGTTAGAGGGACAGTGGTAT 57.515 47.619 0.00 0.00 0.00 2.73
809 818 2.901839 GTTGGTTAGAGGGACAGTGGTA 59.098 50.000 0.00 0.00 0.00 3.25
810 819 1.697982 GTTGGTTAGAGGGACAGTGGT 59.302 52.381 0.00 0.00 0.00 4.16
811 820 1.003233 GGTTGGTTAGAGGGACAGTGG 59.997 57.143 0.00 0.00 0.00 4.00
812 821 1.697432 TGGTTGGTTAGAGGGACAGTG 59.303 52.381 0.00 0.00 0.00 3.66
813 822 2.112279 TGGTTGGTTAGAGGGACAGT 57.888 50.000 0.00 0.00 0.00 3.55
814 823 3.009033 TGATTGGTTGGTTAGAGGGACAG 59.991 47.826 0.00 0.00 0.00 3.51
815 824 2.983192 TGATTGGTTGGTTAGAGGGACA 59.017 45.455 0.00 0.00 0.00 4.02
816 825 3.244770 TGTGATTGGTTGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
817 826 2.983192 TGTGATTGGTTGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
818 827 3.244911 ACTGTGATTGGTTGGTTAGAGGG 60.245 47.826 0.00 0.00 0.00 4.30
819 828 4.021102 ACTGTGATTGGTTGGTTAGAGG 57.979 45.455 0.00 0.00 0.00 3.69
820 829 5.362556 CAACTGTGATTGGTTGGTTAGAG 57.637 43.478 0.00 0.00 39.08 2.43
831 840 2.995466 ATGCGAACCAACTGTGATTG 57.005 45.000 0.00 0.00 0.00 2.67
832 841 4.050553 CAAAATGCGAACCAACTGTGATT 58.949 39.130 0.00 0.00 0.00 2.57
833 842 3.552684 CCAAAATGCGAACCAACTGTGAT 60.553 43.478 0.00 0.00 0.00 3.06
834 843 2.223688 CCAAAATGCGAACCAACTGTGA 60.224 45.455 0.00 0.00 0.00 3.58
835 844 2.126467 CCAAAATGCGAACCAACTGTG 58.874 47.619 0.00 0.00 0.00 3.66
836 845 2.028130 TCCAAAATGCGAACCAACTGT 58.972 42.857 0.00 0.00 0.00 3.55
837 846 2.791383 TCCAAAATGCGAACCAACTG 57.209 45.000 0.00 0.00 0.00 3.16
838 847 4.039124 AGAAATCCAAAATGCGAACCAACT 59.961 37.500 0.00 0.00 0.00 3.16
839 848 4.150451 CAGAAATCCAAAATGCGAACCAAC 59.850 41.667 0.00 0.00 0.00 3.77
840 849 4.202202 ACAGAAATCCAAAATGCGAACCAA 60.202 37.500 0.00 0.00 0.00 3.67
841 850 3.320541 ACAGAAATCCAAAATGCGAACCA 59.679 39.130 0.00 0.00 0.00 3.67
842 851 3.913089 ACAGAAATCCAAAATGCGAACC 58.087 40.909 0.00 0.00 0.00 3.62
843 852 4.150451 CCAACAGAAATCCAAAATGCGAAC 59.850 41.667 0.00 0.00 0.00 3.95
844 853 4.038522 TCCAACAGAAATCCAAAATGCGAA 59.961 37.500 0.00 0.00 0.00 4.70
845 854 3.571828 TCCAACAGAAATCCAAAATGCGA 59.428 39.130 0.00 0.00 0.00 5.10
846 855 3.911868 TCCAACAGAAATCCAAAATGCG 58.088 40.909 0.00 0.00 0.00 4.73
847 856 4.692155 CCTTCCAACAGAAATCCAAAATGC 59.308 41.667 0.00 0.00 32.88 3.56
848 857 5.857268 ACCTTCCAACAGAAATCCAAAATG 58.143 37.500 0.00 0.00 32.88 2.32
849 858 7.610580 TTACCTTCCAACAGAAATCCAAAAT 57.389 32.000 0.00 0.00 32.88 1.82
850 859 7.425224 TTTACCTTCCAACAGAAATCCAAAA 57.575 32.000 0.00 0.00 32.88 2.44
851 860 7.425224 TTTTACCTTCCAACAGAAATCCAAA 57.575 32.000 0.00 0.00 32.88 3.28
852 861 7.343316 TCTTTTTACCTTCCAACAGAAATCCAA 59.657 33.333 0.00 0.00 32.88 3.53
853 862 6.836527 TCTTTTTACCTTCCAACAGAAATCCA 59.163 34.615 0.00 0.00 32.88 3.41
854 863 7.284919 TCTTTTTACCTTCCAACAGAAATCC 57.715 36.000 0.00 0.00 32.88 3.01
855 864 9.764363 AATTCTTTTTACCTTCCAACAGAAATC 57.236 29.630 0.00 0.00 32.88 2.17
858 867 9.416284 ACTAATTCTTTTTACCTTCCAACAGAA 57.584 29.630 0.00 0.00 0.00 3.02
859 868 8.990163 ACTAATTCTTTTTACCTTCCAACAGA 57.010 30.769 0.00 0.00 0.00 3.41
860 869 9.067986 AGACTAATTCTTTTTACCTTCCAACAG 57.932 33.333 0.00 0.00 0.00 3.16
861 870 8.990163 AGACTAATTCTTTTTACCTTCCAACA 57.010 30.769 0.00 0.00 0.00 3.33
863 872 9.734984 CCTAGACTAATTCTTTTTACCTTCCAA 57.265 33.333 0.00 0.00 35.55 3.53
864 873 8.326529 CCCTAGACTAATTCTTTTTACCTTCCA 58.673 37.037 0.00 0.00 35.55 3.53
865 874 8.327271 ACCCTAGACTAATTCTTTTTACCTTCC 58.673 37.037 0.00 0.00 35.55 3.46
902 911 3.864540 GCAAGGCCTAAAACATTCAACCC 60.865 47.826 5.16 0.00 0.00 4.11
913 922 2.367241 GGTTTTCCAAGCAAGGCCTAAA 59.633 45.455 5.16 0.00 40.31 1.85
963 972 3.000727 GTGGTGACCGGTGATTCTTAAG 58.999 50.000 14.63 0.00 0.00 1.85
968 977 0.250553 TTGGTGGTGACCGGTGATTC 60.251 55.000 14.63 0.12 46.62 2.52
1016 1025 1.668151 GACCACTGGAGTTGTCGCC 60.668 63.158 0.71 0.00 32.28 5.54
1026 1035 0.681733 ATGGCTATAGCGACCACTGG 59.318 55.000 18.30 0.00 43.26 4.00
1027 1036 1.667177 CGATGGCTATAGCGACCACTG 60.667 57.143 18.30 4.01 43.26 3.66
1030 1039 1.289066 GCGATGGCTATAGCGACCA 59.711 57.895 18.30 11.23 43.26 4.02
1031 1040 0.319555 TTGCGATGGCTATAGCGACC 60.320 55.000 18.30 4.69 43.26 4.79
1037 1046 2.649190 TGGCTTTTTGCGATGGCTATA 58.351 42.857 0.15 0.00 44.05 1.31
1038 1047 1.473258 TGGCTTTTTGCGATGGCTAT 58.527 45.000 0.15 0.00 44.05 2.97
1049 1058 2.482721 CCAGACGATACGTTGGCTTTTT 59.517 45.455 0.00 0.00 41.37 1.94
1528 1537 4.792804 GAGGAGGGCTGTGGCTGC 62.793 72.222 0.00 0.00 38.73 5.25
1815 1836 0.037326 GAGCGACAGGTTCACCATGA 60.037 55.000 0.00 0.00 38.89 3.07
1954 1975 2.572284 CGGTTCTCGTCCTCCACC 59.428 66.667 0.00 0.00 0.00 4.61
2005 2026 1.181741 TCGAGAACAGCTCCAGCAGT 61.182 55.000 0.48 0.00 45.16 4.40
2212 2233 0.107703 GGTTCGCCAGGATCATCACA 60.108 55.000 0.00 0.00 37.19 3.58
2284 2305 1.601759 CATGATCCCCACGATGGCC 60.602 63.158 0.00 0.00 35.79 5.36
2287 2308 2.610694 GCGCATGATCCCCACGATG 61.611 63.158 0.30 0.00 0.00 3.84
2638 2659 1.202486 TGTCAGAACTGGGTCGTGTTC 60.202 52.381 1.93 0.00 41.84 3.18
2679 2700 0.968393 GAGAGGAGAGAAGCGTGGGT 60.968 60.000 0.00 0.00 0.00 4.51
2711 2787 7.704578 AACAAGAGCAGAGAAGTATACTGTA 57.295 36.000 6.06 0.00 34.60 2.74
2712 2788 6.597832 AACAAGAGCAGAGAAGTATACTGT 57.402 37.500 6.06 0.00 34.60 3.55
2713 2789 9.593134 AATAAACAAGAGCAGAGAAGTATACTG 57.407 33.333 6.06 0.00 35.14 2.74
2714 2790 9.810545 GAATAAACAAGAGCAGAGAAGTATACT 57.189 33.333 0.00 0.00 0.00 2.12
2715 2791 9.587772 TGAATAAACAAGAGCAGAGAAGTATAC 57.412 33.333 0.00 0.00 0.00 1.47
2717 2793 9.160496 CTTGAATAAACAAGAGCAGAGAAGTAT 57.840 33.333 0.00 0.00 46.85 2.12
2771 2847 0.311165 CCGGAGCAGGTAGATACACG 59.689 60.000 0.00 0.00 0.00 4.49
2832 2910 3.181907 GATGGGATCATCAACGCCTACG 61.182 54.545 0.00 0.00 46.74 3.51
2894 2973 4.411327 CACACGACAGTTTCACAAATTGT 58.589 39.130 0.00 0.00 42.96 2.71
2903 2985 0.580104 CGAACCCACACGACAGTTTC 59.420 55.000 0.00 0.00 0.00 2.78
2905 2987 0.808453 CACGAACCCACACGACAGTT 60.808 55.000 0.00 0.00 0.00 3.16
2911 2993 1.084935 TTGTGTCACGAACCCACACG 61.085 55.000 0.00 0.00 42.87 4.49
2955 3038 0.319641 AAAGAACGTCGGAGGCTGAC 60.320 55.000 0.00 0.00 36.50 3.51
3017 3100 6.667661 ACGGAGGGAGTAGTAAGTACTAATT 58.332 40.000 0.00 0.00 42.48 1.40
3030 3113 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3031 3114 1.856629 TAATTCCGAACGGAGGGAGT 58.143 50.000 15.34 4.12 46.06 3.85
3032 3115 3.470645 AATAATTCCGAACGGAGGGAG 57.529 47.619 15.34 0.00 46.06 4.30
3033 3116 3.054948 ACAAATAATTCCGAACGGAGGGA 60.055 43.478 15.34 2.49 46.06 4.20
3034 3117 3.275999 ACAAATAATTCCGAACGGAGGG 58.724 45.455 15.34 5.11 46.06 4.30
3035 3118 4.189231 AGACAAATAATTCCGAACGGAGG 58.811 43.478 15.34 4.52 46.06 4.30
3036 3119 4.026804 CGAGACAAATAATTCCGAACGGAG 60.027 45.833 15.34 5.60 46.06 4.63
3037 3120 3.861113 CGAGACAAATAATTCCGAACGGA 59.139 43.478 12.04 12.04 43.52 4.69
3038 3121 3.861113 TCGAGACAAATAATTCCGAACGG 59.139 43.478 6.94 6.94 0.00 4.44
3039 3122 5.444586 TTCGAGACAAATAATTCCGAACG 57.555 39.130 0.00 0.00 30.98 3.95
3040 3123 8.009974 CCATATTCGAGACAAATAATTCCGAAC 58.990 37.037 0.00 0.00 37.38 3.95
3041 3124 7.929245 TCCATATTCGAGACAAATAATTCCGAA 59.071 33.333 0.00 0.00 38.59 4.30
3042 3125 7.438564 TCCATATTCGAGACAAATAATTCCGA 58.561 34.615 0.00 0.00 0.00 4.55
3043 3126 7.652300 TCCATATTCGAGACAAATAATTCCG 57.348 36.000 0.00 0.00 0.00 4.30
3044 3127 9.003658 ACATCCATATTCGAGACAAATAATTCC 57.996 33.333 0.00 0.00 0.00 3.01
3051 3134 9.297037 TCTAGATACATCCATATTCGAGACAAA 57.703 33.333 0.00 0.00 0.00 2.83
3052 3135 8.863872 TCTAGATACATCCATATTCGAGACAA 57.136 34.615 0.00 0.00 0.00 3.18
3053 3136 8.731605 GTTCTAGATACATCCATATTCGAGACA 58.268 37.037 0.00 0.00 0.00 3.41
3054 3137 8.952278 AGTTCTAGATACATCCATATTCGAGAC 58.048 37.037 0.00 0.00 0.00 3.36
3096 3179 9.125026 GGAATTACTTGTCATAGAAATGGATGT 57.875 33.333 0.00 0.00 33.61 3.06
3097 3180 8.285394 CGGAATTACTTGTCATAGAAATGGATG 58.715 37.037 0.00 0.00 33.61 3.51
3098 3181 8.210946 TCGGAATTACTTGTCATAGAAATGGAT 58.789 33.333 0.00 0.00 33.61 3.41
3099 3182 7.561251 TCGGAATTACTTGTCATAGAAATGGA 58.439 34.615 0.00 0.00 33.61 3.41
3100 3183 7.786178 TCGGAATTACTTGTCATAGAAATGG 57.214 36.000 0.00 0.00 33.61 3.16
3101 3184 8.664798 TGTTCGGAATTACTTGTCATAGAAATG 58.335 33.333 0.00 0.00 0.00 2.32
3102 3185 8.786826 TGTTCGGAATTACTTGTCATAGAAAT 57.213 30.769 0.00 0.00 0.00 2.17
3103 3186 8.092068 TCTGTTCGGAATTACTTGTCATAGAAA 58.908 33.333 0.00 0.00 0.00 2.52
3104 3187 7.608153 TCTGTTCGGAATTACTTGTCATAGAA 58.392 34.615 0.00 0.00 0.00 2.10
3105 3188 7.165460 TCTGTTCGGAATTACTTGTCATAGA 57.835 36.000 0.00 0.00 0.00 1.98
3106 3189 7.759886 TCTTCTGTTCGGAATTACTTGTCATAG 59.240 37.037 0.00 0.00 0.00 2.23
3107 3190 7.608153 TCTTCTGTTCGGAATTACTTGTCATA 58.392 34.615 0.00 0.00 0.00 2.15
3108 3191 6.464222 TCTTCTGTTCGGAATTACTTGTCAT 58.536 36.000 0.00 0.00 0.00 3.06
3109 3192 5.849510 TCTTCTGTTCGGAATTACTTGTCA 58.150 37.500 0.00 0.00 0.00 3.58
3110 3193 6.424207 ACTTCTTCTGTTCGGAATTACTTGTC 59.576 38.462 0.00 0.00 0.00 3.18
3111 3194 6.289064 ACTTCTTCTGTTCGGAATTACTTGT 58.711 36.000 0.00 0.00 0.00 3.16
3112 3195 6.787085 ACTTCTTCTGTTCGGAATTACTTG 57.213 37.500 0.00 0.00 0.00 3.16
3113 3196 7.439381 TGTACTTCTTCTGTTCGGAATTACTT 58.561 34.615 0.00 0.00 31.20 2.24
3114 3197 6.989659 TGTACTTCTTCTGTTCGGAATTACT 58.010 36.000 0.00 0.00 31.20 2.24
3115 3198 7.829378 ATGTACTTCTTCTGTTCGGAATTAC 57.171 36.000 0.00 0.00 0.00 1.89
3116 3199 8.842358 AAATGTACTTCTTCTGTTCGGAATTA 57.158 30.769 0.00 0.00 0.00 1.40
3117 3200 7.745620 AAATGTACTTCTTCTGTTCGGAATT 57.254 32.000 0.00 0.00 0.00 2.17
3118 3201 8.842358 TTAAATGTACTTCTTCTGTTCGGAAT 57.158 30.769 0.00 0.00 0.00 3.01
3119 3202 8.842358 ATTAAATGTACTTCTTCTGTTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
3120 3203 8.092068 TGATTAAATGTACTTCTTCTGTTCGGA 58.908 33.333 0.00 0.00 0.00 4.55
3121 3204 8.169268 GTGATTAAATGTACTTCTTCTGTTCGG 58.831 37.037 0.00 0.00 0.00 4.30
3122 3205 8.926710 AGTGATTAAATGTACTTCTTCTGTTCG 58.073 33.333 0.00 0.00 0.00 3.95
3124 3207 9.220767 GGAGTGATTAAATGTACTTCTTCTGTT 57.779 33.333 0.00 0.00 0.00 3.16
3125 3208 7.824779 GGGAGTGATTAAATGTACTTCTTCTGT 59.175 37.037 0.00 0.00 0.00 3.41
3126 3209 8.043710 AGGGAGTGATTAAATGTACTTCTTCTG 58.956 37.037 0.00 0.00 0.00 3.02
3127 3210 8.152023 AGGGAGTGATTAAATGTACTTCTTCT 57.848 34.615 0.00 0.00 0.00 2.85
3128 3211 9.886132 TTAGGGAGTGATTAAATGTACTTCTTC 57.114 33.333 0.00 0.00 0.00 2.87
3133 3216 9.614792 GTGAATTAGGGAGTGATTAAATGTACT 57.385 33.333 0.00 0.00 0.00 2.73
3134 3217 9.614792 AGTGAATTAGGGAGTGATTAAATGTAC 57.385 33.333 0.00 0.00 0.00 2.90
3163 3246 0.661552 CAGCCGAAATCAGCTCATGG 59.338 55.000 0.00 0.00 37.18 3.66
3190 3273 1.888512 GCTCAAGCAATCTTTGTCCCA 59.111 47.619 0.00 0.00 41.59 4.37
3266 3349 5.491982 AGTAAAGTGATGGTGTTCTGGATC 58.508 41.667 0.00 0.00 0.00 3.36
3267 3350 5.505181 AGTAAAGTGATGGTGTTCTGGAT 57.495 39.130 0.00 0.00 0.00 3.41
3268 3351 4.974645 AGTAAAGTGATGGTGTTCTGGA 57.025 40.909 0.00 0.00 0.00 3.86
3269 3352 5.530915 TGAAAGTAAAGTGATGGTGTTCTGG 59.469 40.000 0.00 0.00 0.00 3.86
3270 3353 6.618287 TGAAAGTAAAGTGATGGTGTTCTG 57.382 37.500 0.00 0.00 0.00 3.02
3271 3354 7.339466 AGTTTGAAAGTAAAGTGATGGTGTTCT 59.661 33.333 0.00 0.00 0.00 3.01
3272 3355 7.432252 CAGTTTGAAAGTAAAGTGATGGTGTTC 59.568 37.037 0.00 0.00 41.36 3.18
3273 3356 7.093945 ACAGTTTGAAAGTAAAGTGATGGTGTT 60.094 33.333 11.69 0.00 41.36 3.32
3274 3357 6.377146 ACAGTTTGAAAGTAAAGTGATGGTGT 59.623 34.615 11.69 0.00 41.36 4.16
3275 3358 6.692681 CACAGTTTGAAAGTAAAGTGATGGTG 59.307 38.462 11.69 0.00 41.36 4.17
3276 3359 6.377146 ACACAGTTTGAAAGTAAAGTGATGGT 59.623 34.615 11.69 5.51 41.36 3.55
3277 3360 6.795399 ACACAGTTTGAAAGTAAAGTGATGG 58.205 36.000 11.69 5.04 41.36 3.51
3278 3361 9.221775 GTTACACAGTTTGAAAGTAAAGTGATG 57.778 33.333 11.69 8.92 41.36 3.07
3279 3362 8.120465 CGTTACACAGTTTGAAAGTAAAGTGAT 58.880 33.333 11.69 3.99 41.36 3.06
3327 3410 0.792640 ACTTGAACGCAGCTTGATCG 59.207 50.000 0.00 0.00 0.00 3.69
3332 3415 1.202580 AGTCTGACTTGAACGCAGCTT 60.203 47.619 4.06 0.00 0.00 3.74
3338 3421 1.190323 GTTGCGAGTCTGACTTGAACG 59.810 52.381 25.65 18.09 31.05 3.95
3343 3426 2.622064 AAAGGTTGCGAGTCTGACTT 57.378 45.000 12.27 0.00 0.00 3.01
3380 3463 8.913487 AATGCTTTTCTCAATTCAAAAGGATT 57.087 26.923 18.39 18.39 46.92 3.01
3381 3464 8.913487 AAATGCTTTTCTCAATTCAAAAGGAT 57.087 26.923 11.85 11.85 46.57 3.24
3382 3465 8.735692 AAAATGCTTTTCTCAATTCAAAAGGA 57.264 26.923 12.50 10.90 42.09 3.36
3405 3488 4.241681 GACCTGCAACTTGTGTTCAAAAA 58.758 39.130 0.00 0.00 33.52 1.94
3426 3509 4.245660 CCAGATTTTTCTCTGCTGTACGA 58.754 43.478 0.00 0.00 41.12 3.43
3508 3591 9.668497 ACTGAAATAGAATACCTTTAGTTGACC 57.332 33.333 0.00 0.00 0.00 4.02
3517 3600 9.145442 GGGAGTACTACTGAAATAGAATACCTT 57.855 37.037 4.77 0.00 0.00 3.50
3523 3606 5.826737 CGGAGGGAGTACTACTGAAATAGAA 59.173 44.000 4.77 0.00 0.00 2.10
3530 3613 1.211457 GGACGGAGGGAGTACTACTGA 59.789 57.143 4.77 0.00 0.00 3.41
3531 3614 1.677942 GGACGGAGGGAGTACTACTG 58.322 60.000 4.77 1.08 0.00 2.74
3532 3615 0.179936 CGGACGGAGGGAGTACTACT 59.820 60.000 4.77 1.85 0.00 2.57
3533 3616 0.179000 TCGGACGGAGGGAGTACTAC 59.821 60.000 0.00 0.00 0.00 2.73
3534 3617 0.911769 TTCGGACGGAGGGAGTACTA 59.088 55.000 0.00 0.00 0.00 1.82
3535 3618 0.038744 TTTCGGACGGAGGGAGTACT 59.961 55.000 0.00 0.00 0.00 2.73
3536 3619 0.890683 TTTTCGGACGGAGGGAGTAC 59.109 55.000 0.00 0.00 0.00 2.73
3537 3620 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
3538 3621 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
3539 3622 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
3540 3623 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
3541 3624 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
3542 3625 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
3543 3626 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
3544 3627 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
3545 3628 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
3546 3629 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
3547 3630 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
3548 3631 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
3549 3632 8.638565 GTTCATTTTGATGACAAGTATTTTCGG 58.361 33.333 0.00 0.00 37.32 4.30
3550 3633 9.179552 TGTTCATTTTGATGACAAGTATTTTCG 57.820 29.630 0.00 0.00 37.32 3.46
3556 3639 9.868277 ACTTTTTGTTCATTTTGATGACAAGTA 57.132 25.926 0.00 0.00 37.32 2.24
3557 3640 8.776376 ACTTTTTGTTCATTTTGATGACAAGT 57.224 26.923 0.00 0.00 37.32 3.16
3558 3641 8.330302 GGACTTTTTGTTCATTTTGATGACAAG 58.670 33.333 0.00 0.00 37.32 3.16
3559 3642 8.040132 AGGACTTTTTGTTCATTTTGATGACAA 58.960 29.630 0.00 0.00 0.00 3.18
3560 3643 7.555087 AGGACTTTTTGTTCATTTTGATGACA 58.445 30.769 0.00 0.00 0.00 3.58
3561 3644 7.922811 AGAGGACTTTTTGTTCATTTTGATGAC 59.077 33.333 0.00 0.00 0.00 3.06
3562 3645 8.010733 AGAGGACTTTTTGTTCATTTTGATGA 57.989 30.769 0.00 0.00 0.00 2.92
3563 3646 8.652810 AAGAGGACTTTTTGTTCATTTTGATG 57.347 30.769 0.00 0.00 31.71 3.07
3580 3663 9.300681 TGTCATCAAAATGAATAAAAGAGGACT 57.699 29.630 0.00 0.00 43.42 3.85
3581 3664 9.912634 TTGTCATCAAAATGAATAAAAGAGGAC 57.087 29.630 0.00 0.00 43.42 3.85
3583 3666 9.918630 ACTTGTCATCAAAATGAATAAAAGAGG 57.081 29.630 0.00 0.00 43.42 3.69
3591 3674 9.865321 CCAGAAATACTTGTCATCAAAATGAAT 57.135 29.630 0.00 0.00 43.42 2.57
3592 3675 9.076781 TCCAGAAATACTTGTCATCAAAATGAA 57.923 29.630 0.00 0.00 43.42 2.57
3593 3676 8.514594 GTCCAGAAATACTTGTCATCAAAATGA 58.485 33.333 0.00 0.00 39.63 2.57
3594 3677 7.482743 CGTCCAGAAATACTTGTCATCAAAATG 59.517 37.037 0.00 0.00 32.87 2.32
3595 3678 7.362056 CCGTCCAGAAATACTTGTCATCAAAAT 60.362 37.037 0.00 0.00 32.87 1.82
3596 3679 6.072728 CCGTCCAGAAATACTTGTCATCAAAA 60.073 38.462 0.00 0.00 32.87 2.44
3597 3680 5.411361 CCGTCCAGAAATACTTGTCATCAAA 59.589 40.000 0.00 0.00 32.87 2.69
3598 3681 4.935205 CCGTCCAGAAATACTTGTCATCAA 59.065 41.667 0.00 0.00 0.00 2.57
3599 3682 4.221924 TCCGTCCAGAAATACTTGTCATCA 59.778 41.667 0.00 0.00 0.00 3.07
3600 3683 4.755411 TCCGTCCAGAAATACTTGTCATC 58.245 43.478 0.00 0.00 0.00 2.92
3601 3684 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
3602 3685 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
3603 3686 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
3604 3687 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
3605 3688 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3606 3689 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
3607 3690 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
3608 3691 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
3609 3692 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
3610 3693 2.108970 GTACTCCCTCCGTCCAGAAAT 58.891 52.381 0.00 0.00 0.00 2.17
3611 3694 1.203087 TGTACTCCCTCCGTCCAGAAA 60.203 52.381 0.00 0.00 0.00 2.52
3612 3695 0.406750 TGTACTCCCTCCGTCCAGAA 59.593 55.000 0.00 0.00 0.00 3.02
3613 3696 0.406750 TTGTACTCCCTCCGTCCAGA 59.593 55.000 0.00 0.00 0.00 3.86
3614 3697 0.531200 GTTGTACTCCCTCCGTCCAG 59.469 60.000 0.00 0.00 0.00 3.86
3615 3698 0.113776 AGTTGTACTCCCTCCGTCCA 59.886 55.000 0.00 0.00 0.00 4.02
3616 3699 0.816373 GAGTTGTACTCCCTCCGTCC 59.184 60.000 0.00 0.00 39.28 4.79
3617 3700 1.473278 CTGAGTTGTACTCCCTCCGTC 59.527 57.143 4.52 0.00 44.44 4.79
3618 3701 1.546961 CTGAGTTGTACTCCCTCCGT 58.453 55.000 4.52 0.00 44.44 4.69
3619 3702 0.173708 GCTGAGTTGTACTCCCTCCG 59.826 60.000 4.52 0.00 44.44 4.63
3620 3703 1.478916 GAGCTGAGTTGTACTCCCTCC 59.521 57.143 0.00 0.00 44.44 4.30
3621 3704 1.133407 CGAGCTGAGTTGTACTCCCTC 59.867 57.143 0.00 8.72 44.44 4.30
3622 3705 1.178276 CGAGCTGAGTTGTACTCCCT 58.822 55.000 0.00 1.50 44.44 4.20
3623 3706 1.174783 TCGAGCTGAGTTGTACTCCC 58.825 55.000 0.00 0.00 44.44 4.30
3624 3707 2.030185 TGTTCGAGCTGAGTTGTACTCC 60.030 50.000 0.00 0.00 44.44 3.85
3625 3708 3.284323 TGTTCGAGCTGAGTTGTACTC 57.716 47.619 0.00 0.00 45.26 2.59
3699 3782 3.004419 CGCATCGTTCTATGGAAGAGGTA 59.996 47.826 0.00 0.00 35.05 3.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.