Multiple sequence alignment - TraesCS7A01G194800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G194800 chr7A 100.000 4178 0 0 1 4178 154334941 154330764 0.000000e+00 7716.0
1 TraesCS7A01G194800 chr7A 92.657 286 19 1 3893 4178 124031524 124031807 1.080000e-110 411.0
2 TraesCS7A01G194800 chr7A 92.021 188 15 0 2418 2605 311837494 311837307 8.910000e-67 265.0
3 TraesCS7A01G194800 chr7A 89.552 201 21 0 2415 2615 219543491 219543291 5.360000e-64 255.0
4 TraesCS7A01G194800 chr7D 97.333 975 20 3 2607 3578 153124106 153123135 0.000000e+00 1652.0
5 TraesCS7A01G194800 chr7D 86.168 1511 136 41 274 1743 153126319 153124841 0.000000e+00 1565.0
6 TraesCS7A01G194800 chr7D 95.716 677 28 1 1741 2416 153124784 153124108 0.000000e+00 1088.0
7 TraesCS7A01G194800 chr7D 79.470 302 48 11 500 790 153126137 153125839 7.080000e-48 202.0
8 TraesCS7A01G194800 chr7B 85.251 1512 156 42 274 1743 115200577 115199091 0.000000e+00 1495.0
9 TraesCS7A01G194800 chr7B 93.400 1000 43 12 2602 3578 115198365 115197366 0.000000e+00 1459.0
10 TraesCS7A01G194800 chr7B 93.013 687 38 7 1741 2420 115199034 115198351 0.000000e+00 994.0
11 TraesCS7A01G194800 chr7B 88.746 311 31 4 3572 3878 282254860 282255170 1.100000e-100 377.0
12 TraesCS7A01G194800 chr7B 85.838 346 33 9 3599 3932 282252088 282252429 1.850000e-93 353.0
13 TraesCS7A01G194800 chr7B 80.657 274 38 13 275 540 99591680 99591414 9.160000e-47 198.0
14 TraesCS7A01G194800 chr7B 76.615 325 64 10 275 590 684933372 684933693 7.180000e-38 169.0
15 TraesCS7A01G194800 chr1B 82.324 611 83 24 3579 4178 206114763 206114167 1.340000e-139 507.0
16 TraesCS7A01G194800 chr1B 92.254 284 20 1 3894 4177 206102823 206102542 6.510000e-108 401.0
17 TraesCS7A01G194800 chr1B 90.452 199 15 4 2410 2605 105938059 105938256 4.140000e-65 259.0
18 TraesCS7A01G194800 chr1B 76.554 354 68 14 275 620 576512209 576511863 3.320000e-41 180.0
19 TraesCS7A01G194800 chr2B 81.997 611 85 24 3579 4178 98426269 98426865 2.900000e-136 496.0
20 TraesCS7A01G194800 chr1D 90.270 370 25 8 3571 3932 314389482 314389848 1.360000e-129 473.0
21 TraesCS7A01G194800 chr1D 89.560 364 28 7 3576 3932 314386679 314387039 1.770000e-123 453.0
22 TraesCS7A01G194800 chr1D 80.180 222 23 11 515 725 117051250 117051039 3.370000e-31 147.0
23 TraesCS7A01G194800 chr6D 92.447 331 18 6 3578 3904 116964751 116965078 2.270000e-127 466.0
24 TraesCS7A01G194800 chr3B 81.209 612 84 27 3571 4166 768797313 768797909 8.180000e-127 464.0
25 TraesCS7A01G194800 chr3B 87.812 361 34 8 3579 3932 145412076 145412433 8.360000e-112 414.0
26 TraesCS7A01G194800 chr3B 91.579 285 22 1 3894 4178 768794898 768795180 3.920000e-105 392.0
27 TraesCS7A01G194800 chr3B 83.136 338 47 9 3576 3909 33587688 33587357 2.440000e-77 300.0
28 TraesCS7A01G194800 chr3B 91.489 188 16 0 2418 2605 784606425 784606238 4.140000e-65 259.0
29 TraesCS7A01G194800 chr5D 89.326 356 30 7 3582 3932 31267695 31267343 1.380000e-119 440.0
30 TraesCS7A01G194800 chr5D 78.889 450 75 16 275 716 342964371 342963934 1.900000e-73 287.0
31 TraesCS7A01G194800 chr5B 86.981 361 34 9 3579 3932 425541677 425541323 1.090000e-105 394.0
32 TraesCS7A01G194800 chr5B 91.667 192 16 0 2418 2609 78360456 78360647 2.480000e-67 267.0
33 TraesCS7A01G194800 chr5B 92.021 188 15 0 2418 2605 329939213 329939400 8.910000e-67 265.0
34 TraesCS7A01G194800 chr5B 75.407 492 79 29 305 785 417003886 417003426 2.550000e-47 200.0
35 TraesCS7A01G194800 chr4B 91.579 285 22 1 3894 4178 131953403 131953121 3.920000e-105 392.0
36 TraesCS7A01G194800 chr4B 91.579 285 21 2 3894 4178 131956134 131955853 1.410000e-104 390.0
37 TraesCS7A01G194800 chr1A 91.259 286 21 2 3893 4178 146044697 146044416 1.820000e-103 387.0
38 TraesCS7A01G194800 chr1A 100.000 29 0 0 954 982 375216359 375216331 2.000000e-03 54.7
39 TraesCS7A01G194800 chr3D 80.863 371 53 14 424 783 393649650 393649287 4.110000e-70 276.0
40 TraesCS7A01G194800 chr3D 78.736 348 57 13 454 790 613831865 613832206 2.530000e-52 217.0
41 TraesCS7A01G194800 chr6B 91.534 189 16 0 2417 2605 340596439 340596627 1.150000e-65 261.0
42 TraesCS7A01G194800 chr6B 77.365 296 58 9 264 554 671094743 671094452 2.580000e-37 167.0
43 TraesCS7A01G194800 chr5A 89.268 205 19 3 2411 2613 14937579 14937782 1.930000e-63 254.0
44 TraesCS7A01G194800 chr5A 76.791 349 62 17 275 614 435003394 435003056 1.190000e-40 178.0
45 TraesCS7A01G194800 chr5A 84.783 92 11 3 833 921 502550822 502550913 5.750000e-14 89.8
46 TraesCS7A01G194800 chr4A 90.957 188 17 0 2418 2605 125230588 125230775 1.930000e-63 254.0
47 TraesCS7A01G194800 chr4A 87.755 49 4 2 948 995 205221895 205221942 5.840000e-04 56.5
48 TraesCS7A01G194800 chr3A 77.060 449 62 29 376 813 648304563 648304981 1.960000e-53 220.0
49 TraesCS7A01G194800 chr2D 76.977 430 68 25 276 686 569154538 569154121 2.530000e-52 217.0
50 TraesCS7A01G194800 chr2D 83.465 127 14 7 275 397 517654521 517654644 1.230000e-20 111.0
51 TraesCS7A01G194800 chr2A 79.545 264 44 9 273 533 478390401 478390145 3.320000e-41 180.0
52 TraesCS7A01G194800 chr6A 74.111 506 74 33 310 787 608121142 608120666 5.590000e-34 156.0
53 TraesCS7A01G194800 chrUn 90.196 51 2 3 827 877 90113294 90113247 3.490000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G194800 chr7A 154330764 154334941 4177 True 7716.00 7716 100.000000 1 4178 1 chr7A.!!$R1 4177
1 TraesCS7A01G194800 chr7D 153123135 153126319 3184 True 1126.75 1652 89.671750 274 3578 4 chr7D.!!$R1 3304
2 TraesCS7A01G194800 chr7B 115197366 115200577 3211 True 1316.00 1495 90.554667 274 3578 3 chr7B.!!$R2 3304
3 TraesCS7A01G194800 chr7B 282252088 282255170 3082 False 365.00 377 87.292000 3572 3932 2 chr7B.!!$F2 360
4 TraesCS7A01G194800 chr1B 206114167 206114763 596 True 507.00 507 82.324000 3579 4178 1 chr1B.!!$R2 599
5 TraesCS7A01G194800 chr2B 98426269 98426865 596 False 496.00 496 81.997000 3579 4178 1 chr2B.!!$F1 599
6 TraesCS7A01G194800 chr1D 314386679 314389848 3169 False 463.00 473 89.915000 3571 3932 2 chr1D.!!$F1 361
7 TraesCS7A01G194800 chr3B 768794898 768797909 3011 False 428.00 464 86.394000 3571 4178 2 chr3B.!!$F2 607
8 TraesCS7A01G194800 chr4B 131953121 131956134 3013 True 391.00 392 91.579000 3894 4178 2 chr4B.!!$R1 284


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
928 987 0.247736 CTCGCTAGAAGCCCACAACT 59.752 55.0 0.00 0.0 38.18 3.16 F
1632 1696 0.611896 AAGGGATTGGGCCAAAGACG 60.612 55.0 24.97 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2449 2585 0.551396 TCCTACCATCAGAGCTCCGA 59.449 55.0 10.93 6.0 0.0 4.55 R
3465 3606 0.036010 TAGCTTGCCTGAGTTCCTGC 60.036 55.0 0.00 0.0 0.0 4.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 9.520204 TCTTTGCTTATTTCTTTGTTTCTCTTG 57.480 29.630 0.00 0.00 0.00 3.02
36 37 9.305925 CTTTGCTTATTTCTTTGTTTCTCTTGT 57.694 29.630 0.00 0.00 0.00 3.16
37 38 9.651913 TTTGCTTATTTCTTTGTTTCTCTTGTT 57.348 25.926 0.00 0.00 0.00 2.83
38 39 9.651913 TTGCTTATTTCTTTGTTTCTCTTGTTT 57.348 25.926 0.00 0.00 0.00 2.83
39 40 9.651913 TGCTTATTTCTTTGTTTCTCTTGTTTT 57.348 25.926 0.00 0.00 0.00 2.43
45 46 8.970691 TTCTTTGTTTCTCTTGTTTTTCTCTG 57.029 30.769 0.00 0.00 0.00 3.35
46 47 7.029563 TCTTTGTTTCTCTTGTTTTTCTCTGC 58.970 34.615 0.00 0.00 0.00 4.26
47 48 5.248870 TGTTTCTCTTGTTTTTCTCTGCC 57.751 39.130 0.00 0.00 0.00 4.85
48 49 4.949856 TGTTTCTCTTGTTTTTCTCTGCCT 59.050 37.500 0.00 0.00 0.00 4.75
49 50 5.418840 TGTTTCTCTTGTTTTTCTCTGCCTT 59.581 36.000 0.00 0.00 0.00 4.35
50 51 6.071391 TGTTTCTCTTGTTTTTCTCTGCCTTT 60.071 34.615 0.00 0.00 0.00 3.11
51 52 6.530019 TTCTCTTGTTTTTCTCTGCCTTTT 57.470 33.333 0.00 0.00 0.00 2.27
52 53 7.639113 TTCTCTTGTTTTTCTCTGCCTTTTA 57.361 32.000 0.00 0.00 0.00 1.52
53 54 7.823745 TCTCTTGTTTTTCTCTGCCTTTTAT 57.176 32.000 0.00 0.00 0.00 1.40
54 55 8.237811 TCTCTTGTTTTTCTCTGCCTTTTATT 57.762 30.769 0.00 0.00 0.00 1.40
55 56 8.695456 TCTCTTGTTTTTCTCTGCCTTTTATTT 58.305 29.630 0.00 0.00 0.00 1.40
56 57 9.317936 CTCTTGTTTTTCTCTGCCTTTTATTTT 57.682 29.630 0.00 0.00 0.00 1.82
57 58 9.665719 TCTTGTTTTTCTCTGCCTTTTATTTTT 57.334 25.926 0.00 0.00 0.00 1.94
58 59 9.706846 CTTGTTTTTCTCTGCCTTTTATTTTTG 57.293 29.630 0.00 0.00 0.00 2.44
59 60 7.693020 TGTTTTTCTCTGCCTTTTATTTTTGC 58.307 30.769 0.00 0.00 0.00 3.68
60 61 7.552330 TGTTTTTCTCTGCCTTTTATTTTTGCT 59.448 29.630 0.00 0.00 0.00 3.91
61 62 9.040939 GTTTTTCTCTGCCTTTTATTTTTGCTA 57.959 29.630 0.00 0.00 0.00 3.49
62 63 9.606631 TTTTTCTCTGCCTTTTATTTTTGCTAA 57.393 25.926 0.00 0.00 0.00 3.09
63 64 9.777297 TTTTCTCTGCCTTTTATTTTTGCTAAT 57.223 25.926 0.00 0.00 0.00 1.73
64 65 9.777297 TTTCTCTGCCTTTTATTTTTGCTAATT 57.223 25.926 0.00 0.00 0.00 1.40
65 66 8.986477 TCTCTGCCTTTTATTTTTGCTAATTC 57.014 30.769 0.00 0.00 0.00 2.17
66 67 8.806146 TCTCTGCCTTTTATTTTTGCTAATTCT 58.194 29.630 0.00 0.00 0.00 2.40
67 68 9.428097 CTCTGCCTTTTATTTTTGCTAATTCTT 57.572 29.630 0.00 0.00 0.00 2.52
68 69 9.777297 TCTGCCTTTTATTTTTGCTAATTCTTT 57.223 25.926 0.00 0.00 0.00 2.52
81 82 8.864069 TTGCTAATTCTTTTTGTCGATTTTCA 57.136 26.923 0.00 0.00 0.00 2.69
82 83 9.474920 TTGCTAATTCTTTTTGTCGATTTTCAT 57.525 25.926 0.00 0.00 0.00 2.57
83 84 9.128107 TGCTAATTCTTTTTGTCGATTTTCATC 57.872 29.630 0.00 0.00 0.00 2.92
84 85 8.587111 GCTAATTCTTTTTGTCGATTTTCATCC 58.413 33.333 0.00 0.00 0.00 3.51
85 86 7.566858 AATTCTTTTTGTCGATTTTCATCCG 57.433 32.000 0.00 0.00 0.00 4.18
86 87 5.682943 TCTTTTTGTCGATTTTCATCCGT 57.317 34.783 0.00 0.00 0.00 4.69
87 88 6.067263 TCTTTTTGTCGATTTTCATCCGTT 57.933 33.333 0.00 0.00 0.00 4.44
88 89 6.500041 TCTTTTTGTCGATTTTCATCCGTTT 58.500 32.000 0.00 0.00 0.00 3.60
89 90 6.975772 TCTTTTTGTCGATTTTCATCCGTTTT 59.024 30.769 0.00 0.00 0.00 2.43
90 91 6.741448 TTTTGTCGATTTTCATCCGTTTTC 57.259 33.333 0.00 0.00 0.00 2.29
91 92 5.682943 TTGTCGATTTTCATCCGTTTTCT 57.317 34.783 0.00 0.00 0.00 2.52
92 93 5.682943 TGTCGATTTTCATCCGTTTTCTT 57.317 34.783 0.00 0.00 0.00 2.52
93 94 6.067263 TGTCGATTTTCATCCGTTTTCTTT 57.933 33.333 0.00 0.00 0.00 2.52
94 95 6.500041 TGTCGATTTTCATCCGTTTTCTTTT 58.500 32.000 0.00 0.00 0.00 2.27
95 96 6.975772 TGTCGATTTTCATCCGTTTTCTTTTT 59.024 30.769 0.00 0.00 0.00 1.94
121 122 9.862371 TTGTTCAACACATGTTAACTTTATTGT 57.138 25.926 7.22 1.45 36.32 2.71
239 240 7.872163 TTTTGATGTCTGCATTTTCATACAC 57.128 32.000 0.00 0.00 35.07 2.90
240 241 6.572167 TTGATGTCTGCATTTTCATACACA 57.428 33.333 0.00 0.00 35.07 3.72
241 242 6.762702 TGATGTCTGCATTTTCATACACAT 57.237 33.333 0.00 0.00 35.07 3.21
242 243 7.160547 TGATGTCTGCATTTTCATACACATT 57.839 32.000 0.00 0.00 35.07 2.71
243 244 7.030768 TGATGTCTGCATTTTCATACACATTG 58.969 34.615 0.00 0.00 35.07 2.82
244 245 6.330004 TGTCTGCATTTTCATACACATTGT 57.670 33.333 0.00 0.00 0.00 2.71
245 246 6.151004 TGTCTGCATTTTCATACACATTGTG 58.849 36.000 15.18 15.18 39.75 3.33
246 247 5.061311 GTCTGCATTTTCATACACATTGTGC 59.939 40.000 16.62 0.00 36.98 4.57
247 248 4.879598 TGCATTTTCATACACATTGTGCA 58.120 34.783 16.62 4.26 36.98 4.57
248 249 5.480205 TGCATTTTCATACACATTGTGCAT 58.520 33.333 16.62 6.70 36.98 3.96
249 250 5.932883 TGCATTTTCATACACATTGTGCATT 59.067 32.000 16.62 0.21 36.98 3.56
250 251 6.427242 TGCATTTTCATACACATTGTGCATTT 59.573 30.769 16.62 0.00 36.98 2.32
251 252 7.041303 TGCATTTTCATACACATTGTGCATTTT 60.041 29.630 16.62 0.00 36.98 1.82
252 253 7.804129 GCATTTTCATACACATTGTGCATTTTT 59.196 29.630 16.62 0.00 36.98 1.94
565 570 8.537049 CATGTTTTGAATACATGGTCAACATT 57.463 30.769 17.42 0.00 45.72 2.71
566 571 8.991026 CATGTTTTGAATACATGGTCAACATTT 58.009 29.630 17.42 0.00 45.72 2.32
702 709 8.821686 AATACATGATCCACTTTTTCCATACA 57.178 30.769 0.00 0.00 0.00 2.29
703 710 6.515272 ACATGATCCACTTTTTCCATACAC 57.485 37.500 0.00 0.00 0.00 2.90
704 711 6.009589 ACATGATCCACTTTTTCCATACACA 58.990 36.000 0.00 0.00 0.00 3.72
705 712 6.664816 ACATGATCCACTTTTTCCATACACAT 59.335 34.615 0.00 0.00 0.00 3.21
879 923 4.738998 TGGGCCGGCACATCTTGG 62.739 66.667 31.83 0.00 0.00 3.61
886 930 3.512516 GCACATCTTGGGCCTCGC 61.513 66.667 4.53 0.00 41.97 5.03
891 935 1.094073 CATCTTGGGCCTCGCTTCAG 61.094 60.000 4.53 0.00 0.00 3.02
928 987 0.247736 CTCGCTAGAAGCCCACAACT 59.752 55.000 0.00 0.00 38.18 3.16
955 1014 3.966543 ACTTGCCCTTCCCCACCG 61.967 66.667 0.00 0.00 0.00 4.94
996 1055 3.812019 CTCTACGACGCAGCCGGT 61.812 66.667 1.90 0.00 39.22 5.28
1257 1316 2.352032 CGTCACCACCCTCCTCTCC 61.352 68.421 0.00 0.00 0.00 3.71
1391 1455 3.369997 CCCCTTCCTGAAGCTTCTAGAAC 60.370 52.174 26.09 0.58 37.11 3.01
1395 1459 2.192263 CCTGAAGCTTCTAGAACCCCT 58.808 52.381 26.09 0.00 0.00 4.79
1464 1528 2.451294 GGGATGGGGCTGGAGGAT 60.451 66.667 0.00 0.00 0.00 3.24
1521 1585 3.164269 AGGATCCGGGCGATGCTT 61.164 61.111 5.98 0.00 46.74 3.91
1632 1696 0.611896 AAGGGATTGGGCCAAAGACG 60.612 55.000 24.97 0.00 0.00 4.18
1651 1715 4.877251 AGACGGTGAGTTACTACATCTCTC 59.123 45.833 0.00 0.00 0.00 3.20
1654 1718 4.025563 CGGTGAGTTACTACATCTCTCTCG 60.026 50.000 0.00 0.00 0.00 4.04
1689 1758 3.558931 TGAGCTTTCTGTTCTGGTTGA 57.441 42.857 0.00 0.00 0.00 3.18
1708 1777 5.245531 GTTGATGGAGGTATGTGAAGTTCA 58.754 41.667 0.08 0.08 0.00 3.18
1710 1779 4.532126 TGATGGAGGTATGTGAAGTTCAGT 59.468 41.667 5.62 0.76 0.00 3.41
1791 1920 2.623889 AGTCAGCGGATTATTCGTAGCT 59.376 45.455 0.00 0.00 35.06 3.32
1794 1923 4.980434 GTCAGCGGATTATTCGTAGCTTTA 59.020 41.667 0.00 0.00 32.05 1.85
1825 1954 6.839124 TTCTGTACTTAATCACCGGAACTA 57.161 37.500 9.46 0.00 0.00 2.24
1933 2066 4.485163 CATATGACCTCATAACGATCGCA 58.515 43.478 16.60 3.35 41.60 5.10
2302 2437 6.127730 CCGACTACAATTTTAGCCTTCCAAAT 60.128 38.462 0.00 0.00 0.00 2.32
2348 2484 4.870123 ATTGAGCACAATGGTTGCTAAA 57.130 36.364 8.67 0.00 43.90 1.85
2349 2485 4.870123 TTGAGCACAATGGTTGCTAAAT 57.130 36.364 0.00 0.00 39.21 1.40
2416 2552 5.803020 ACTCAAACAGACTTGTTCAGAAC 57.197 39.130 6.32 6.32 46.54 3.01
2417 2553 4.636206 ACTCAAACAGACTTGTTCAGAACC 59.364 41.667 10.93 0.00 46.54 3.62
2418 2554 4.584874 TCAAACAGACTTGTTCAGAACCA 58.415 39.130 10.93 0.00 46.54 3.67
2419 2555 5.007034 TCAAACAGACTTGTTCAGAACCAA 58.993 37.500 10.93 4.73 46.54 3.67
2420 2556 5.123820 TCAAACAGACTTGTTCAGAACCAAG 59.876 40.000 10.93 14.88 46.54 3.61
2421 2557 3.545703 ACAGACTTGTTCAGAACCAAGG 58.454 45.455 20.44 11.23 32.28 3.61
2422 2558 3.054361 ACAGACTTGTTCAGAACCAAGGT 60.054 43.478 20.44 8.53 32.28 3.50
2423 2559 3.947834 CAGACTTGTTCAGAACCAAGGTT 59.052 43.478 20.44 3.73 41.54 3.50
2424 2560 6.376209 ACAGACTTGTTCAGAACCAAGGTTC 61.376 44.000 21.47 21.47 43.59 3.62
2437 2573 6.923199 AACCAAGGTTCTCAAAATCATGAT 57.077 33.333 1.18 1.18 32.09 2.45
2438 2574 6.923199 ACCAAGGTTCTCAAAATCATGATT 57.077 33.333 15.36 15.36 0.00 2.57
2439 2575 6.928520 ACCAAGGTTCTCAAAATCATGATTC 58.071 36.000 20.95 6.92 0.00 2.52
2440 2576 6.723052 ACCAAGGTTCTCAAAATCATGATTCT 59.277 34.615 20.95 4.73 0.00 2.40
2441 2577 7.033791 CCAAGGTTCTCAAAATCATGATTCTG 58.966 38.462 20.95 17.60 0.00 3.02
2442 2578 7.094075 CCAAGGTTCTCAAAATCATGATTCTGA 60.094 37.037 20.53 20.53 0.00 3.27
2443 2579 8.301720 CAAGGTTCTCAAAATCATGATTCTGAA 58.698 33.333 21.70 17.99 28.48 3.02
2444 2580 8.591114 AGGTTCTCAAAATCATGATTCTGAAT 57.409 30.769 21.70 1.81 28.48 2.57
2445 2581 8.684520 AGGTTCTCAAAATCATGATTCTGAATC 58.315 33.333 21.70 20.74 38.40 2.52
2446 2582 7.642978 GGTTCTCAAAATCATGATTCTGAATCG 59.357 37.037 21.70 12.65 40.84 3.34
2447 2583 7.255491 TCTCAAAATCATGATTCTGAATCGG 57.745 36.000 21.70 17.04 40.84 4.18
2448 2584 7.049754 TCTCAAAATCATGATTCTGAATCGGA 58.950 34.615 21.70 20.74 40.84 4.55
2449 2585 7.718314 TCTCAAAATCATGATTCTGAATCGGAT 59.282 33.333 21.70 21.73 40.84 4.18
2450 2586 7.868775 TCAAAATCATGATTCTGAATCGGATC 58.131 34.615 19.77 8.69 40.84 3.36
2451 2587 6.477669 AAATCATGATTCTGAATCGGATCG 57.522 37.500 24.91 13.77 40.84 3.69
2452 2588 3.917988 TCATGATTCTGAATCGGATCGG 58.082 45.455 21.70 9.89 40.84 4.18
2453 2589 3.573967 TCATGATTCTGAATCGGATCGGA 59.426 43.478 21.70 5.34 40.84 4.55
2454 2590 3.650070 TGATTCTGAATCGGATCGGAG 57.350 47.619 21.70 0.00 40.84 4.63
2455 2591 2.288457 TGATTCTGAATCGGATCGGAGC 60.288 50.000 21.70 4.40 40.84 4.70
2456 2592 1.403814 TTCTGAATCGGATCGGAGCT 58.596 50.000 9.03 0.00 36.15 4.09
2457 2593 0.955178 TCTGAATCGGATCGGAGCTC 59.045 55.000 4.71 4.71 31.19 4.09
2458 2594 0.958091 CTGAATCGGATCGGAGCTCT 59.042 55.000 14.64 0.00 0.00 4.09
2459 2595 0.670706 TGAATCGGATCGGAGCTCTG 59.329 55.000 16.98 16.98 0.00 3.35
2460 2596 0.955178 GAATCGGATCGGAGCTCTGA 59.045 55.000 27.03 27.03 35.43 3.27
2461 2597 1.543802 GAATCGGATCGGAGCTCTGAT 59.456 52.381 33.44 33.44 44.19 2.90
2462 2598 0.887247 ATCGGATCGGAGCTCTGATG 59.113 55.000 36.97 24.93 41.75 3.07
2463 2599 1.175347 TCGGATCGGAGCTCTGATGG 61.175 60.000 36.97 27.55 41.75 3.51
2464 2600 1.459455 CGGATCGGAGCTCTGATGGT 61.459 60.000 36.97 18.91 41.75 3.55
2465 2601 1.621992 GGATCGGAGCTCTGATGGTA 58.378 55.000 36.97 12.85 41.75 3.25
2466 2602 1.543802 GGATCGGAGCTCTGATGGTAG 59.456 57.143 36.97 9.16 41.75 3.18
2467 2603 1.543802 GATCGGAGCTCTGATGGTAGG 59.456 57.143 36.97 6.40 41.75 3.18
2468 2604 0.551396 TCGGAGCTCTGATGGTAGGA 59.449 55.000 21.62 0.00 0.00 2.94
2469 2605 1.145945 TCGGAGCTCTGATGGTAGGAT 59.854 52.381 21.62 0.00 0.00 3.24
2470 2606 2.375509 TCGGAGCTCTGATGGTAGGATA 59.624 50.000 21.62 0.00 0.00 2.59
2471 2607 2.752354 CGGAGCTCTGATGGTAGGATAG 59.248 54.545 18.26 0.00 0.00 2.08
2472 2608 2.495669 GGAGCTCTGATGGTAGGATAGC 59.504 54.545 14.64 0.00 40.09 2.97
2487 2623 8.910351 GGTAGGATAGCAAATTGTAGAATCTT 57.090 34.615 0.00 0.00 39.30 2.40
2488 2624 9.998106 GGTAGGATAGCAAATTGTAGAATCTTA 57.002 33.333 0.00 0.00 39.30 2.10
2502 2638 8.693120 TGTAGAATCTTAACTATCAGGATCGT 57.307 34.615 0.00 0.00 0.00 3.73
2503 2639 9.788889 TGTAGAATCTTAACTATCAGGATCGTA 57.211 33.333 0.00 0.00 0.00 3.43
2506 2642 9.575868 AGAATCTTAACTATCAGGATCGTAGAA 57.424 33.333 0.00 0.00 43.58 2.10
2508 2644 9.968870 AATCTTAACTATCAGGATCGTAGAAAC 57.031 33.333 0.00 0.00 43.58 2.78
2509 2645 8.749026 TCTTAACTATCAGGATCGTAGAAACT 57.251 34.615 0.00 0.00 43.58 2.66
2510 2646 9.186837 TCTTAACTATCAGGATCGTAGAAACTT 57.813 33.333 0.00 0.00 43.58 2.66
2513 2649 8.749026 AACTATCAGGATCGTAGAAACTTAGA 57.251 34.615 0.00 0.00 43.58 2.10
2514 2650 8.927675 ACTATCAGGATCGTAGAAACTTAGAT 57.072 34.615 0.00 0.00 43.58 1.98
2515 2651 9.357161 ACTATCAGGATCGTAGAAACTTAGATT 57.643 33.333 0.00 0.00 43.58 2.40
2516 2652 9.834628 CTATCAGGATCGTAGAAACTTAGATTC 57.165 37.037 0.00 0.00 43.58 2.52
2517 2653 7.883391 TCAGGATCGTAGAAACTTAGATTCT 57.117 36.000 9.59 9.59 43.58 2.40
2518 2654 8.975663 TCAGGATCGTAGAAACTTAGATTCTA 57.024 34.615 7.70 7.70 43.58 2.10
2519 2655 9.575868 TCAGGATCGTAGAAACTTAGATTCTAT 57.424 33.333 13.63 1.40 43.58 1.98
2520 2656 9.619316 CAGGATCGTAGAAACTTAGATTCTATG 57.381 37.037 19.17 19.17 43.58 2.23
2525 2661 8.963725 TCGTAGAAACTTAGATTCTATGAACCA 58.036 33.333 23.04 8.34 45.51 3.67
2526 2662 9.239002 CGTAGAAACTTAGATTCTATGAACCAG 57.761 37.037 20.05 1.03 44.00 4.00
2539 2675 6.669278 TCTATGAACCAGAATCGTAGAATCG 58.331 40.000 3.62 0.00 42.14 3.34
2540 2676 4.976224 TGAACCAGAATCGTAGAATCGA 57.024 40.909 0.00 0.00 42.14 3.59
2541 2677 5.319140 TGAACCAGAATCGTAGAATCGAA 57.681 39.130 0.00 0.00 42.14 3.71
2542 2678 5.340803 TGAACCAGAATCGTAGAATCGAAG 58.659 41.667 0.00 0.00 42.14 3.79
2543 2679 4.308899 ACCAGAATCGTAGAATCGAAGG 57.691 45.455 0.00 0.00 42.14 3.46
2544 2680 3.068307 ACCAGAATCGTAGAATCGAAGGG 59.932 47.826 0.00 0.00 42.14 3.95
2545 2681 3.068307 CCAGAATCGTAGAATCGAAGGGT 59.932 47.826 0.00 0.00 42.14 4.34
2546 2682 4.441634 CCAGAATCGTAGAATCGAAGGGTT 60.442 45.833 0.00 0.00 42.14 4.11
2547 2683 5.109903 CAGAATCGTAGAATCGAAGGGTTT 58.890 41.667 0.00 0.00 42.14 3.27
2548 2684 6.270815 CAGAATCGTAGAATCGAAGGGTTTA 58.729 40.000 0.00 0.00 42.14 2.01
2549 2685 6.418226 CAGAATCGTAGAATCGAAGGGTTTAG 59.582 42.308 0.00 0.00 42.14 1.85
2550 2686 5.848833 ATCGTAGAATCGAAGGGTTTAGT 57.151 39.130 0.00 0.00 43.58 2.24
2551 2687 5.649782 TCGTAGAATCGAAGGGTTTAGTT 57.350 39.130 0.00 0.00 36.89 2.24
2552 2688 6.029346 TCGTAGAATCGAAGGGTTTAGTTT 57.971 37.500 0.00 0.00 36.89 2.66
2553 2689 5.865552 TCGTAGAATCGAAGGGTTTAGTTTG 59.134 40.000 0.00 0.00 36.89 2.93
2554 2690 5.063060 CGTAGAATCGAAGGGTTTAGTTTGG 59.937 44.000 0.00 0.00 0.00 3.28
2555 2691 5.237236 AGAATCGAAGGGTTTAGTTTGGA 57.763 39.130 0.00 0.00 0.00 3.53
2556 2692 5.816682 AGAATCGAAGGGTTTAGTTTGGAT 58.183 37.500 0.00 0.00 0.00 3.41
2557 2693 5.880887 AGAATCGAAGGGTTTAGTTTGGATC 59.119 40.000 0.00 0.00 0.00 3.36
2558 2694 3.592059 TCGAAGGGTTTAGTTTGGATCG 58.408 45.455 0.00 0.00 0.00 3.69
2559 2695 3.007182 TCGAAGGGTTTAGTTTGGATCGT 59.993 43.478 0.00 0.00 0.00 3.73
2560 2696 4.220382 TCGAAGGGTTTAGTTTGGATCGTA 59.780 41.667 0.00 0.00 0.00 3.43
2561 2697 4.931002 CGAAGGGTTTAGTTTGGATCGTAA 59.069 41.667 0.00 0.00 0.00 3.18
2562 2698 5.409214 CGAAGGGTTTAGTTTGGATCGTAAA 59.591 40.000 0.00 0.00 0.00 2.01
2563 2699 6.401796 CGAAGGGTTTAGTTTGGATCGTAAAG 60.402 42.308 0.00 0.00 0.00 1.85
2564 2700 5.872963 AGGGTTTAGTTTGGATCGTAAAGT 58.127 37.500 6.63 6.63 0.00 2.66
2565 2701 5.936372 AGGGTTTAGTTTGGATCGTAAAGTC 59.064 40.000 5.09 0.00 0.00 3.01
2566 2702 5.163923 GGGTTTAGTTTGGATCGTAAAGTCG 60.164 44.000 5.09 0.00 0.00 4.18
2567 2703 5.406477 GGTTTAGTTTGGATCGTAAAGTCGT 59.594 40.000 5.09 0.00 0.00 4.34
2568 2704 6.586082 GGTTTAGTTTGGATCGTAAAGTCGTA 59.414 38.462 5.09 0.00 0.00 3.43
2569 2705 7.201384 GGTTTAGTTTGGATCGTAAAGTCGTAG 60.201 40.741 5.09 0.00 0.00 3.51
2570 2706 5.633830 AGTTTGGATCGTAAAGTCGTAGA 57.366 39.130 0.00 0.00 0.00 2.59
2571 2707 6.017400 AGTTTGGATCGTAAAGTCGTAGAA 57.983 37.500 0.00 0.00 39.69 2.10
2572 2708 6.628185 AGTTTGGATCGTAAAGTCGTAGAAT 58.372 36.000 0.00 0.00 39.69 2.40
2573 2709 6.750963 AGTTTGGATCGTAAAGTCGTAGAATC 59.249 38.462 0.00 0.00 39.69 2.52
2574 2710 4.840911 TGGATCGTAAAGTCGTAGAATCG 58.159 43.478 0.00 0.00 39.69 3.34
2575 2711 4.333649 TGGATCGTAAAGTCGTAGAATCGT 59.666 41.667 0.00 0.00 39.69 3.73
2576 2712 5.523552 TGGATCGTAAAGTCGTAGAATCGTA 59.476 40.000 0.00 0.00 39.69 3.43
2577 2713 6.203530 TGGATCGTAAAGTCGTAGAATCGTAT 59.796 38.462 0.00 0.00 39.69 3.06
2578 2714 7.384932 TGGATCGTAAAGTCGTAGAATCGTATA 59.615 37.037 0.00 0.00 39.69 1.47
2579 2715 8.223769 GGATCGTAAAGTCGTAGAATCGTATAA 58.776 37.037 0.00 0.00 39.69 0.98
2580 2716 8.925788 ATCGTAAAGTCGTAGAATCGTATAAC 57.074 34.615 0.00 0.00 39.69 1.89
2581 2717 7.905126 TCGTAAAGTCGTAGAATCGTATAACA 58.095 34.615 0.00 0.00 39.69 2.41
2582 2718 8.058328 TCGTAAAGTCGTAGAATCGTATAACAG 58.942 37.037 0.00 0.00 39.69 3.16
2583 2719 8.058328 CGTAAAGTCGTAGAATCGTATAACAGA 58.942 37.037 0.00 0.00 39.69 3.41
2584 2720 9.708222 GTAAAGTCGTAGAATCGTATAACAGAA 57.292 33.333 0.00 0.00 39.69 3.02
2586 2722 9.448294 AAAGTCGTAGAATCGTATAACAGAATC 57.552 33.333 0.00 0.00 39.69 2.52
2587 2723 7.289395 AGTCGTAGAATCGTATAACAGAATCG 58.711 38.462 0.00 0.00 39.69 3.34
2588 2724 7.042187 AGTCGTAGAATCGTATAACAGAATCGT 60.042 37.037 0.00 0.00 39.69 3.73
2589 2725 7.058128 GTCGTAGAATCGTATAACAGAATCGTG 59.942 40.741 0.00 0.00 39.69 4.35
2590 2726 7.042523 TCGTAGAATCGTATAACAGAATCGTGA 60.043 37.037 0.00 0.00 0.00 4.35
2591 2727 7.745155 CGTAGAATCGTATAACAGAATCGTGAT 59.255 37.037 0.00 0.00 0.00 3.06
2592 2728 9.395707 GTAGAATCGTATAACAGAATCGTGATT 57.604 33.333 0.00 0.00 0.00 2.57
2593 2729 8.508800 AGAATCGTATAACAGAATCGTGATTC 57.491 34.615 13.46 13.46 45.66 2.52
2679 2815 7.432869 TCTGCATGCTGTTTAATTAGTTGTTT 58.567 30.769 20.33 0.00 0.00 2.83
3080 3218 4.154942 ACTCATGGGAAGCTTTGTCAATT 58.845 39.130 0.00 0.00 0.00 2.32
3103 3241 5.872635 TGTGTACGATAAAGTTAGGAGTCG 58.127 41.667 0.00 0.00 35.42 4.18
3152 3290 3.072476 TGTCCCTTAGCAAGCTACTGTTT 59.928 43.478 0.40 0.00 0.00 2.83
3401 3542 5.712217 TGTATAACTGAAACATGCTACGC 57.288 39.130 0.00 0.00 0.00 4.42
3465 3606 1.002430 TCTCAAGCTACTGCCCTGTTG 59.998 52.381 0.00 0.00 40.80 3.33
3538 3698 4.022935 CAGCACTCAAACAAGATAAAGCCA 60.023 41.667 0.00 0.00 0.00 4.75
3545 3705 7.831193 ACTCAAACAAGATAAAGCCATACTCAT 59.169 33.333 0.00 0.00 0.00 2.90
3548 3708 6.506538 ACAAGATAAAGCCATACTCATCCT 57.493 37.500 0.00 0.00 0.00 3.24
3590 3750 0.102481 ATACCAGTGATGCGACCGTC 59.898 55.000 0.00 0.00 0.00 4.79
3593 3753 1.443702 CAGTGATGCGACCGTCGAA 60.444 57.895 24.78 15.28 43.74 3.71
3601 3761 1.004715 TGCGACCGTCGAAAGAAAAAC 60.005 47.619 24.78 3.94 43.74 2.43
3610 3770 1.004292 CGAAAGAAAAACGACGGTGCT 60.004 47.619 0.00 0.00 0.00 4.40
3616 3776 5.273523 AGAAAAACGACGGTGCTAATAAC 57.726 39.130 0.00 0.00 0.00 1.89
3619 3779 5.678132 AAAACGACGGTGCTAATAACTTT 57.322 34.783 0.00 0.00 0.00 2.66
3638 3798 3.773418 TTCCCAATCTTTCACGGTACA 57.227 42.857 0.00 0.00 0.00 2.90
3639 3799 3.328382 TCCCAATCTTTCACGGTACAG 57.672 47.619 0.00 0.00 0.00 2.74
3653 3813 2.132762 GGTACAGTGTCACCTGAAACG 58.867 52.381 0.00 0.00 37.36 3.60
3655 3815 0.539986 ACAGTGTCACCTGAAACGGT 59.460 50.000 0.00 0.00 37.36 4.83
3665 3825 0.666274 CTGAAACGGTGTAGCGCTCA 60.666 55.000 16.34 9.61 0.00 4.26
3715 3875 2.023414 AACACGCACACCCGAGAGAA 62.023 55.000 0.00 0.00 0.00 2.87
3723 3883 1.811359 ACACCCGAGAGAAGAAGTACG 59.189 52.381 0.00 0.00 0.00 3.67
3736 3896 2.095532 AGAAGTACGTGGACGATCTTCG 59.904 50.000 21.78 0.00 45.74 3.79
3752 3912 1.396301 CTTCGGCAGATCAGCAGAAAC 59.604 52.381 21.98 0.97 45.47 2.78
3774 3934 9.651913 GAAACTGAAACTCTAGAATCAATCTCT 57.348 33.333 0.00 0.00 39.71 3.10
3837 3997 2.111251 GCGGCTTGGAGATACCCC 59.889 66.667 0.00 0.00 38.00 4.95
3878 4041 5.123227 TCGATGGAAATAACCTAGCCAAAG 58.877 41.667 0.00 0.00 31.53 2.77
3882 4045 7.362574 CGATGGAAATAACCTAGCCAAAGAAAA 60.363 37.037 0.00 0.00 31.53 2.29
3883 4046 7.604657 TGGAAATAACCTAGCCAAAGAAAAA 57.395 32.000 0.00 0.00 0.00 1.94
3885 4048 7.289084 TGGAAATAACCTAGCCAAAGAAAAACT 59.711 33.333 0.00 0.00 0.00 2.66
3886 4049 7.598869 GGAAATAACCTAGCCAAAGAAAAACTG 59.401 37.037 0.00 0.00 0.00 3.16
3889 4052 2.029020 CCTAGCCAAAGAAAAACTGCCC 60.029 50.000 0.00 0.00 0.00 5.36
3991 9900 6.407202 TCCTAATTGGACTCTAAAAGCTGAC 58.593 40.000 0.00 0.00 40.56 3.51
4052 9961 1.862201 GTAACTAGCAACACACGCACA 59.138 47.619 0.00 0.00 0.00 4.57
4065 9974 5.634896 ACACACGCACATACTAGTACTAAC 58.365 41.667 4.31 0.00 0.00 2.34
4099 10008 4.494484 TGACATTAGATCACACGAACCTG 58.506 43.478 0.00 0.00 0.00 4.00
4105 10014 7.068348 ACATTAGATCACACGAACCTGTACTAT 59.932 37.037 0.00 0.00 0.00 2.12
4106 10015 8.565416 CATTAGATCACACGAACCTGTACTATA 58.435 37.037 0.00 0.00 0.00 1.31
4116 10025 5.340439 AACCTGTACTATACTGCTGAACC 57.660 43.478 0.00 0.00 0.00 3.62
4117 10026 4.350245 ACCTGTACTATACTGCTGAACCA 58.650 43.478 0.00 0.00 0.00 3.67
4119 10028 5.105310 ACCTGTACTATACTGCTGAACCAAG 60.105 44.000 0.00 0.00 0.00 3.61
4135 10044 9.255304 GCTGAACCAAGAAATAAAAATAACACA 57.745 29.630 0.00 0.00 0.00 3.72
4157 10066 7.224753 ACACAGTACTTGTATGTTGAAACTGAG 59.775 37.037 6.18 1.24 38.16 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.520204 CAAGAGAAACAAAGAAATAAGCAAAGA 57.480 29.630 0.00 0.00 0.00 2.52
10 11 9.305925 ACAAGAGAAACAAAGAAATAAGCAAAG 57.694 29.630 0.00 0.00 0.00 2.77
11 12 9.651913 AACAAGAGAAACAAAGAAATAAGCAAA 57.348 25.926 0.00 0.00 0.00 3.68
12 13 9.651913 AAACAAGAGAAACAAAGAAATAAGCAA 57.348 25.926 0.00 0.00 0.00 3.91
13 14 9.651913 AAAACAAGAGAAACAAAGAAATAAGCA 57.348 25.926 0.00 0.00 0.00 3.91
19 20 9.410556 CAGAGAAAAACAAGAGAAACAAAGAAA 57.589 29.630 0.00 0.00 0.00 2.52
20 21 7.542130 GCAGAGAAAAACAAGAGAAACAAAGAA 59.458 33.333 0.00 0.00 0.00 2.52
21 22 7.029563 GCAGAGAAAAACAAGAGAAACAAAGA 58.970 34.615 0.00 0.00 0.00 2.52
22 23 6.254373 GGCAGAGAAAAACAAGAGAAACAAAG 59.746 38.462 0.00 0.00 0.00 2.77
23 24 6.071391 AGGCAGAGAAAAACAAGAGAAACAAA 60.071 34.615 0.00 0.00 0.00 2.83
24 25 5.418840 AGGCAGAGAAAAACAAGAGAAACAA 59.581 36.000 0.00 0.00 0.00 2.83
25 26 4.949856 AGGCAGAGAAAAACAAGAGAAACA 59.050 37.500 0.00 0.00 0.00 2.83
26 27 5.506686 AGGCAGAGAAAAACAAGAGAAAC 57.493 39.130 0.00 0.00 0.00 2.78
27 28 6.530019 AAAGGCAGAGAAAAACAAGAGAAA 57.470 33.333 0.00 0.00 0.00 2.52
28 29 6.530019 AAAAGGCAGAGAAAAACAAGAGAA 57.470 33.333 0.00 0.00 0.00 2.87
29 30 7.823745 ATAAAAGGCAGAGAAAAACAAGAGA 57.176 32.000 0.00 0.00 0.00 3.10
30 31 8.877808 AAATAAAAGGCAGAGAAAAACAAGAG 57.122 30.769 0.00 0.00 0.00 2.85
31 32 9.665719 AAAAATAAAAGGCAGAGAAAAACAAGA 57.334 25.926 0.00 0.00 0.00 3.02
32 33 9.706846 CAAAAATAAAAGGCAGAGAAAAACAAG 57.293 29.630 0.00 0.00 0.00 3.16
33 34 8.180920 GCAAAAATAAAAGGCAGAGAAAAACAA 58.819 29.630 0.00 0.00 0.00 2.83
34 35 7.552330 AGCAAAAATAAAAGGCAGAGAAAAACA 59.448 29.630 0.00 0.00 0.00 2.83
35 36 7.919690 AGCAAAAATAAAAGGCAGAGAAAAAC 58.080 30.769 0.00 0.00 0.00 2.43
36 37 9.606631 TTAGCAAAAATAAAAGGCAGAGAAAAA 57.393 25.926 0.00 0.00 0.00 1.94
37 38 9.777297 ATTAGCAAAAATAAAAGGCAGAGAAAA 57.223 25.926 0.00 0.00 0.00 2.29
38 39 9.777297 AATTAGCAAAAATAAAAGGCAGAGAAA 57.223 25.926 0.00 0.00 0.00 2.52
39 40 9.423061 GAATTAGCAAAAATAAAAGGCAGAGAA 57.577 29.630 0.00 0.00 0.00 2.87
40 41 8.806146 AGAATTAGCAAAAATAAAAGGCAGAGA 58.194 29.630 0.00 0.00 0.00 3.10
41 42 8.992835 AGAATTAGCAAAAATAAAAGGCAGAG 57.007 30.769 0.00 0.00 0.00 3.35
42 43 9.777297 AAAGAATTAGCAAAAATAAAAGGCAGA 57.223 25.926 0.00 0.00 0.00 4.26
55 56 9.307121 TGAAAATCGACAAAAAGAATTAGCAAA 57.693 25.926 0.00 0.00 0.00 3.68
56 57 8.864069 TGAAAATCGACAAAAAGAATTAGCAA 57.136 26.923 0.00 0.00 0.00 3.91
57 58 9.128107 GATGAAAATCGACAAAAAGAATTAGCA 57.872 29.630 0.00 0.00 0.00 3.49
58 59 8.587111 GGATGAAAATCGACAAAAAGAATTAGC 58.413 33.333 0.00 0.00 0.00 3.09
59 60 8.788813 CGGATGAAAATCGACAAAAAGAATTAG 58.211 33.333 0.00 0.00 0.00 1.73
60 61 8.293867 ACGGATGAAAATCGACAAAAAGAATTA 58.706 29.630 0.00 0.00 0.00 1.40
61 62 7.145323 ACGGATGAAAATCGACAAAAAGAATT 58.855 30.769 0.00 0.00 0.00 2.17
62 63 6.677913 ACGGATGAAAATCGACAAAAAGAAT 58.322 32.000 0.00 0.00 0.00 2.40
63 64 6.067263 ACGGATGAAAATCGACAAAAAGAA 57.933 33.333 0.00 0.00 0.00 2.52
64 65 5.682943 ACGGATGAAAATCGACAAAAAGA 57.317 34.783 0.00 0.00 0.00 2.52
65 66 6.747659 AAACGGATGAAAATCGACAAAAAG 57.252 33.333 0.00 0.00 0.00 2.27
66 67 6.975772 AGAAAACGGATGAAAATCGACAAAAA 59.024 30.769 0.00 0.00 0.00 1.94
67 68 6.500041 AGAAAACGGATGAAAATCGACAAAA 58.500 32.000 0.00 0.00 0.00 2.44
68 69 6.067263 AGAAAACGGATGAAAATCGACAAA 57.933 33.333 0.00 0.00 0.00 2.83
69 70 5.682943 AGAAAACGGATGAAAATCGACAA 57.317 34.783 0.00 0.00 0.00 3.18
70 71 5.682943 AAGAAAACGGATGAAAATCGACA 57.317 34.783 0.00 0.00 0.00 4.35
71 72 6.986424 AAAAGAAAACGGATGAAAATCGAC 57.014 33.333 0.00 0.00 0.00 4.20
95 96 9.862371 ACAATAAAGTTAACATGTGTTGAACAA 57.138 25.926 8.61 0.00 43.61 2.83
214 215 7.924947 TGTGTATGAAAATGCAGACATCAAAAA 59.075 29.630 0.00 0.00 41.40 1.94
215 216 7.432059 TGTGTATGAAAATGCAGACATCAAAA 58.568 30.769 0.00 0.00 41.40 2.44
216 217 6.979465 TGTGTATGAAAATGCAGACATCAAA 58.021 32.000 0.00 0.00 41.40 2.69
217 218 6.572167 TGTGTATGAAAATGCAGACATCAA 57.428 33.333 0.00 0.00 41.40 2.57
218 219 6.762702 ATGTGTATGAAAATGCAGACATCA 57.237 33.333 0.00 0.00 41.40 3.07
219 220 7.008901 CACAATGTGTATGAAAATGCAGACATC 59.991 37.037 5.00 0.00 41.40 3.06
220 221 6.809689 CACAATGTGTATGAAAATGCAGACAT 59.190 34.615 5.00 0.00 41.40 3.06
221 222 6.151004 CACAATGTGTATGAAAATGCAGACA 58.849 36.000 5.00 0.00 37.63 3.41
222 223 5.061311 GCACAATGTGTATGAAAATGCAGAC 59.939 40.000 15.36 0.00 35.75 3.51
223 224 5.162794 GCACAATGTGTATGAAAATGCAGA 58.837 37.500 15.36 0.00 35.75 4.26
224 225 4.924462 TGCACAATGTGTATGAAAATGCAG 59.076 37.500 15.36 0.00 35.74 4.41
225 226 4.879598 TGCACAATGTGTATGAAAATGCA 58.120 34.783 15.36 0.00 38.17 3.96
226 227 6.411630 AATGCACAATGTGTATGAAAATGC 57.588 33.333 17.19 0.00 37.86 3.56
356 358 9.695526 CTTGTATTCCAAAAATGTCAATCAAGA 57.304 29.630 0.00 0.00 31.20 3.02
420 423 9.934190 AAAGCATTTGAACATGTTAAATGTTTC 57.066 25.926 28.99 21.58 41.27 2.78
676 682 9.253832 TGTATGGAAAAAGTGGATCATGTATTT 57.746 29.630 0.00 0.00 0.00 1.40
870 914 1.372087 GAAGCGAGGCCCAAGATGTG 61.372 60.000 0.00 0.00 0.00 3.21
871 915 1.078143 GAAGCGAGGCCCAAGATGT 60.078 57.895 0.00 0.00 0.00 3.06
886 930 3.130160 GGCAAGCCTCGCCTGAAG 61.130 66.667 3.29 0.00 46.56 3.02
907 951 1.134670 GTTGTGGGCTTCTAGCGAGAT 60.135 52.381 0.00 0.00 43.62 2.75
996 1055 0.619255 TGGGCTTCCGGGTCATCTTA 60.619 55.000 0.00 0.00 0.00 2.10
1257 1316 3.041940 GCGTCGGTGGTGTTCTGG 61.042 66.667 0.00 0.00 0.00 3.86
1337 1401 1.063327 CGAGGACTCGCTGCTACAG 59.937 63.158 8.93 0.00 46.50 2.74
1338 1402 3.188011 CGAGGACTCGCTGCTACA 58.812 61.111 8.93 0.00 46.50 2.74
1391 1455 1.002087 GATACTGTTATGGGCGAGGGG 59.998 57.143 0.00 0.00 0.00 4.79
1395 1459 4.955811 ATGAAGATACTGTTATGGGCGA 57.044 40.909 0.00 0.00 0.00 5.54
1521 1585 1.381327 CTTCTCCCTCACGCCCCTA 60.381 63.158 0.00 0.00 0.00 3.53
1632 1696 4.877251 ACGAGAGAGATGTAGTAACTCACC 59.123 45.833 0.00 0.00 33.69 4.02
1651 1715 3.548587 CTCATTGCAGTGAAACAACGAG 58.451 45.455 13.35 0.00 41.43 4.18
1654 1718 3.360249 AGCTCATTGCAGTGAAACAAC 57.640 42.857 13.35 1.30 45.94 3.32
1689 1758 4.836825 CACTGAACTTCACATACCTCCAT 58.163 43.478 0.00 0.00 0.00 3.41
1708 1777 7.094205 CCTTCTTACTTTACCATGAATTGCACT 60.094 37.037 0.00 0.00 0.00 4.40
1710 1779 6.350110 GCCTTCTTACTTTACCATGAATTGCA 60.350 38.462 0.00 0.00 0.00 4.08
1794 1923 9.273016 CCGGTGATTAAGTACAGAATATCAAAT 57.727 33.333 0.00 0.00 0.00 2.32
1825 1954 6.952773 TGTAGTGTTTTGTTCAAAGGCTAT 57.047 33.333 0.00 0.00 0.00 2.97
1867 1996 7.417612 ACATCATAACATGAAAGTTAATCCGC 58.582 34.615 0.00 0.00 43.50 5.54
2079 2212 3.558931 AACATGCATCTCCGACCATTA 57.441 42.857 0.00 0.00 0.00 1.90
2322 2457 3.861113 GCAACCATTGTGCTCAATATGTG 59.139 43.478 13.31 11.73 41.66 3.21
2416 2552 7.033791 CAGAATCATGATTTTGAGAACCTTGG 58.966 38.462 26.93 2.97 35.60 3.61
2417 2553 7.823665 TCAGAATCATGATTTTGAGAACCTTG 58.176 34.615 28.61 12.13 37.11 3.61
2418 2554 8.413309 TTCAGAATCATGATTTTGAGAACCTT 57.587 30.769 29.71 5.76 41.14 3.50
2419 2555 8.591114 ATTCAGAATCATGATTTTGAGAACCT 57.409 30.769 29.71 15.67 41.14 3.50
2420 2556 7.642978 CGATTCAGAATCATGATTTTGAGAACC 59.357 37.037 29.71 21.36 41.14 3.62
2421 2557 7.642978 CCGATTCAGAATCATGATTTTGAGAAC 59.357 37.037 29.71 24.04 41.14 3.01
2422 2558 7.553760 TCCGATTCAGAATCATGATTTTGAGAA 59.446 33.333 29.71 24.02 41.14 2.87
2423 2559 7.049754 TCCGATTCAGAATCATGATTTTGAGA 58.950 34.615 29.71 23.42 41.14 3.27
2424 2560 7.255491 TCCGATTCAGAATCATGATTTTGAG 57.745 36.000 29.71 22.07 41.14 3.02
2425 2561 7.307573 CGATCCGATTCAGAATCATGATTTTGA 60.308 37.037 28.61 28.61 39.29 2.69
2426 2562 6.795593 CGATCCGATTCAGAATCATGATTTTG 59.204 38.462 25.69 25.69 37.78 2.44
2427 2563 6.072838 CCGATCCGATTCAGAATCATGATTTT 60.073 38.462 21.57 13.77 37.78 1.82
2428 2564 5.410746 CCGATCCGATTCAGAATCATGATTT 59.589 40.000 21.57 5.84 37.78 2.17
2429 2565 4.934001 CCGATCCGATTCAGAATCATGATT 59.066 41.667 20.85 20.85 37.78 2.57
2430 2566 4.221482 TCCGATCCGATTCAGAATCATGAT 59.779 41.667 20.87 19.61 37.78 2.45
2431 2567 3.573967 TCCGATCCGATTCAGAATCATGA 59.426 43.478 20.87 16.40 37.78 3.07
2432 2568 3.917988 TCCGATCCGATTCAGAATCATG 58.082 45.455 20.87 12.23 37.78 3.07
2433 2569 3.616076 GCTCCGATCCGATTCAGAATCAT 60.616 47.826 20.87 9.34 37.78 2.45
2434 2570 2.288457 GCTCCGATCCGATTCAGAATCA 60.288 50.000 20.87 4.98 37.78 2.57
2435 2571 2.029470 AGCTCCGATCCGATTCAGAATC 60.029 50.000 12.62 12.62 34.52 2.52
2436 2572 1.967066 AGCTCCGATCCGATTCAGAAT 59.033 47.619 0.00 0.00 0.00 2.40
2437 2573 1.338337 GAGCTCCGATCCGATTCAGAA 59.662 52.381 0.87 0.00 0.00 3.02
2438 2574 0.955178 GAGCTCCGATCCGATTCAGA 59.045 55.000 0.87 0.00 0.00 3.27
2439 2575 0.958091 AGAGCTCCGATCCGATTCAG 59.042 55.000 10.93 0.00 0.00 3.02
2440 2576 0.670706 CAGAGCTCCGATCCGATTCA 59.329 55.000 10.93 0.00 0.00 2.57
2441 2577 0.955178 TCAGAGCTCCGATCCGATTC 59.045 55.000 10.93 0.00 0.00 2.52
2442 2578 1.271934 CATCAGAGCTCCGATCCGATT 59.728 52.381 10.93 0.00 0.00 3.34
2443 2579 0.887247 CATCAGAGCTCCGATCCGAT 59.113 55.000 10.93 0.49 0.00 4.18
2444 2580 1.175347 CCATCAGAGCTCCGATCCGA 61.175 60.000 10.93 0.00 0.00 4.55
2445 2581 1.288439 CCATCAGAGCTCCGATCCG 59.712 63.158 10.93 0.05 0.00 4.18
2446 2582 1.543802 CTACCATCAGAGCTCCGATCC 59.456 57.143 10.93 0.00 0.00 3.36
2447 2583 1.543802 CCTACCATCAGAGCTCCGATC 59.456 57.143 10.93 0.00 0.00 3.69
2448 2584 1.145945 TCCTACCATCAGAGCTCCGAT 59.854 52.381 10.93 8.60 0.00 4.18
2449 2585 0.551396 TCCTACCATCAGAGCTCCGA 59.449 55.000 10.93 6.00 0.00 4.55
2450 2586 1.626686 ATCCTACCATCAGAGCTCCG 58.373 55.000 10.93 0.00 0.00 4.63
2451 2587 2.495669 GCTATCCTACCATCAGAGCTCC 59.504 54.545 10.93 0.00 0.00 4.70
2452 2588 3.161067 TGCTATCCTACCATCAGAGCTC 58.839 50.000 5.27 5.27 0.00 4.09
2453 2589 3.251016 TGCTATCCTACCATCAGAGCT 57.749 47.619 0.00 0.00 0.00 4.09
2454 2590 4.342862 TTTGCTATCCTACCATCAGAGC 57.657 45.455 0.00 0.00 0.00 4.09
2455 2591 6.294473 ACAATTTGCTATCCTACCATCAGAG 58.706 40.000 0.00 0.00 0.00 3.35
2456 2592 6.252599 ACAATTTGCTATCCTACCATCAGA 57.747 37.500 0.00 0.00 0.00 3.27
2457 2593 7.445121 TCTACAATTTGCTATCCTACCATCAG 58.555 38.462 0.00 0.00 0.00 2.90
2458 2594 7.373617 TCTACAATTTGCTATCCTACCATCA 57.626 36.000 0.00 0.00 0.00 3.07
2459 2595 8.854614 ATTCTACAATTTGCTATCCTACCATC 57.145 34.615 0.00 0.00 0.00 3.51
2460 2596 8.664079 AGATTCTACAATTTGCTATCCTACCAT 58.336 33.333 0.00 0.00 0.00 3.55
2461 2597 8.034313 AGATTCTACAATTTGCTATCCTACCA 57.966 34.615 0.00 0.00 0.00 3.25
2462 2598 8.910351 AAGATTCTACAATTTGCTATCCTACC 57.090 34.615 0.00 0.00 0.00 3.18
2476 2612 9.132923 ACGATCCTGATAGTTAAGATTCTACAA 57.867 33.333 0.00 0.00 0.00 2.41
2477 2613 8.693120 ACGATCCTGATAGTTAAGATTCTACA 57.307 34.615 0.00 0.00 0.00 2.74
2480 2616 9.575868 TTCTACGATCCTGATAGTTAAGATTCT 57.424 33.333 0.00 0.00 0.00 2.40
2482 2618 9.968870 GTTTCTACGATCCTGATAGTTAAGATT 57.031 33.333 0.00 0.00 0.00 2.40
2483 2619 9.357161 AGTTTCTACGATCCTGATAGTTAAGAT 57.643 33.333 0.00 0.00 0.00 2.40
2484 2620 8.749026 AGTTTCTACGATCCTGATAGTTAAGA 57.251 34.615 0.00 0.00 0.00 2.10
2487 2623 9.842775 TCTAAGTTTCTACGATCCTGATAGTTA 57.157 33.333 0.00 0.00 0.00 2.24
2488 2624 8.749026 TCTAAGTTTCTACGATCCTGATAGTT 57.251 34.615 0.00 0.00 0.00 2.24
2489 2625 8.927675 ATCTAAGTTTCTACGATCCTGATAGT 57.072 34.615 0.00 0.00 0.00 2.12
2490 2626 9.834628 GAATCTAAGTTTCTACGATCCTGATAG 57.165 37.037 0.00 0.00 0.00 2.08
2491 2627 9.575868 AGAATCTAAGTTTCTACGATCCTGATA 57.424 33.333 0.00 0.00 31.75 2.15
2492 2628 8.472007 AGAATCTAAGTTTCTACGATCCTGAT 57.528 34.615 0.00 0.00 31.75 2.90
2493 2629 7.883391 AGAATCTAAGTTTCTACGATCCTGA 57.117 36.000 0.00 0.00 31.75 3.86
2494 2630 9.619316 CATAGAATCTAAGTTTCTACGATCCTG 57.381 37.037 0.00 0.00 38.23 3.86
2495 2631 9.575868 TCATAGAATCTAAGTTTCTACGATCCT 57.424 33.333 0.00 0.00 38.23 3.24
2498 2634 9.968870 GGTTCATAGAATCTAAGTTTCTACGAT 57.031 33.333 0.00 0.00 38.23 3.73
2499 2635 8.963725 TGGTTCATAGAATCTAAGTTTCTACGA 58.036 33.333 0.00 0.00 38.23 3.43
2500 2636 9.239002 CTGGTTCATAGAATCTAAGTTTCTACG 57.761 37.037 0.00 0.00 38.23 3.51
2513 2649 7.810282 CGATTCTACGATTCTGGTTCATAGAAT 59.190 37.037 2.68 2.68 45.05 2.40
2514 2650 7.012989 TCGATTCTACGATTCTGGTTCATAGAA 59.987 37.037 0.00 0.00 38.42 2.10
2515 2651 6.485648 TCGATTCTACGATTCTGGTTCATAGA 59.514 38.462 0.00 0.00 37.37 1.98
2516 2652 6.669278 TCGATTCTACGATTCTGGTTCATAG 58.331 40.000 0.00 0.00 37.37 2.23
2517 2653 6.628919 TCGATTCTACGATTCTGGTTCATA 57.371 37.500 0.00 0.00 37.37 2.15
2518 2654 5.515797 TCGATTCTACGATTCTGGTTCAT 57.484 39.130 0.00 0.00 37.37 2.57
2519 2655 4.976224 TCGATTCTACGATTCTGGTTCA 57.024 40.909 0.00 0.00 37.37 3.18
2520 2656 4.740695 CCTTCGATTCTACGATTCTGGTTC 59.259 45.833 0.00 0.00 41.82 3.62
2521 2657 4.441634 CCCTTCGATTCTACGATTCTGGTT 60.442 45.833 0.00 0.00 41.82 3.67
2522 2658 3.068307 CCCTTCGATTCTACGATTCTGGT 59.932 47.826 0.00 0.00 41.82 4.00
2523 2659 3.068307 ACCCTTCGATTCTACGATTCTGG 59.932 47.826 0.00 0.00 41.82 3.86
2524 2660 4.308899 ACCCTTCGATTCTACGATTCTG 57.691 45.455 0.00 0.00 41.82 3.02
2525 2661 5.340439 AAACCCTTCGATTCTACGATTCT 57.660 39.130 0.00 0.00 41.82 2.40
2526 2662 6.271566 ACTAAACCCTTCGATTCTACGATTC 58.728 40.000 0.00 0.00 41.82 2.52
2527 2663 6.218108 ACTAAACCCTTCGATTCTACGATT 57.782 37.500 0.00 0.00 41.82 3.34
2528 2664 5.848833 ACTAAACCCTTCGATTCTACGAT 57.151 39.130 0.00 0.00 41.82 3.73
2529 2665 5.649782 AACTAAACCCTTCGATTCTACGA 57.350 39.130 0.00 0.00 40.55 3.43
2530 2666 5.063060 CCAAACTAAACCCTTCGATTCTACG 59.937 44.000 0.00 0.00 0.00 3.51
2531 2667 6.168389 TCCAAACTAAACCCTTCGATTCTAC 58.832 40.000 0.00 0.00 0.00 2.59
2532 2668 6.363167 TCCAAACTAAACCCTTCGATTCTA 57.637 37.500 0.00 0.00 0.00 2.10
2533 2669 5.237236 TCCAAACTAAACCCTTCGATTCT 57.763 39.130 0.00 0.00 0.00 2.40
2534 2670 5.220605 CGATCCAAACTAAACCCTTCGATTC 60.221 44.000 0.00 0.00 0.00 2.52
2535 2671 4.634443 CGATCCAAACTAAACCCTTCGATT 59.366 41.667 0.00 0.00 0.00 3.34
2536 2672 4.189231 CGATCCAAACTAAACCCTTCGAT 58.811 43.478 0.00 0.00 0.00 3.59
2537 2673 3.007182 ACGATCCAAACTAAACCCTTCGA 59.993 43.478 0.00 0.00 0.00 3.71
2538 2674 3.332034 ACGATCCAAACTAAACCCTTCG 58.668 45.455 0.00 0.00 0.00 3.79
2539 2675 6.429078 ACTTTACGATCCAAACTAAACCCTTC 59.571 38.462 0.00 0.00 0.00 3.46
2540 2676 6.301486 ACTTTACGATCCAAACTAAACCCTT 58.699 36.000 0.00 0.00 0.00 3.95
2541 2677 5.872963 ACTTTACGATCCAAACTAAACCCT 58.127 37.500 0.00 0.00 0.00 4.34
2542 2678 5.163923 CGACTTTACGATCCAAACTAAACCC 60.164 44.000 0.00 0.00 35.09 4.11
2543 2679 5.406477 ACGACTTTACGATCCAAACTAAACC 59.594 40.000 0.00 0.00 37.03 3.27
2544 2680 6.457851 ACGACTTTACGATCCAAACTAAAC 57.542 37.500 0.00 0.00 37.03 2.01
2545 2681 7.592938 TCTACGACTTTACGATCCAAACTAAA 58.407 34.615 0.00 0.00 37.03 1.85
2546 2682 7.144722 TCTACGACTTTACGATCCAAACTAA 57.855 36.000 0.00 0.00 37.03 2.24
2547 2683 6.741992 TCTACGACTTTACGATCCAAACTA 57.258 37.500 0.00 0.00 37.03 2.24
2548 2684 5.633830 TCTACGACTTTACGATCCAAACT 57.366 39.130 0.00 0.00 37.03 2.66
2549 2685 6.290956 CGATTCTACGACTTTACGATCCAAAC 60.291 42.308 0.00 0.00 37.03 2.93
2550 2686 5.740569 CGATTCTACGACTTTACGATCCAAA 59.259 40.000 0.00 0.00 37.03 3.28
2551 2687 5.163723 ACGATTCTACGACTTTACGATCCAA 60.164 40.000 0.00 0.00 37.03 3.53
2552 2688 4.333649 ACGATTCTACGACTTTACGATCCA 59.666 41.667 0.00 0.00 37.03 3.41
2553 2689 4.842029 ACGATTCTACGACTTTACGATCC 58.158 43.478 0.00 0.00 37.03 3.36
2554 2690 9.035338 GTTATACGATTCTACGACTTTACGATC 57.965 37.037 0.00 0.00 37.03 3.69
2555 2691 8.551205 TGTTATACGATTCTACGACTTTACGAT 58.449 33.333 0.00 0.00 37.03 3.73
2556 2692 7.905126 TGTTATACGATTCTACGACTTTACGA 58.095 34.615 0.00 0.00 37.03 3.43
2557 2693 8.058328 TCTGTTATACGATTCTACGACTTTACG 58.942 37.037 0.00 0.00 37.03 3.18
2558 2694 9.708222 TTCTGTTATACGATTCTACGACTTTAC 57.292 33.333 0.00 0.00 37.03 2.01
2560 2696 9.448294 GATTCTGTTATACGATTCTACGACTTT 57.552 33.333 0.00 0.00 37.03 2.66
2561 2697 7.797587 CGATTCTGTTATACGATTCTACGACTT 59.202 37.037 0.00 0.00 37.03 3.01
2562 2698 7.042187 ACGATTCTGTTATACGATTCTACGACT 60.042 37.037 0.00 0.00 37.03 4.18
2563 2699 7.058128 CACGATTCTGTTATACGATTCTACGAC 59.942 40.741 0.00 0.00 37.03 4.34
2564 2700 7.042523 TCACGATTCTGTTATACGATTCTACGA 60.043 37.037 0.00 0.00 37.03 3.43
2565 2701 7.067728 TCACGATTCTGTTATACGATTCTACG 58.932 38.462 0.00 0.00 39.31 3.51
2566 2702 8.951954 ATCACGATTCTGTTATACGATTCTAC 57.048 34.615 0.00 0.00 0.00 2.59
2567 2703 9.608617 GAATCACGATTCTGTTATACGATTCTA 57.391 33.333 11.68 0.00 42.85 2.10
2568 2704 8.508800 GAATCACGATTCTGTTATACGATTCT 57.491 34.615 11.68 0.00 42.85 2.40
2581 2717 5.337894 ACAAGGATGTCAGAATCACGATTCT 60.338 40.000 15.08 15.08 44.04 2.40
2582 2718 4.872691 ACAAGGATGTCAGAATCACGATTC 59.127 41.667 11.11 11.11 40.60 2.52
2583 2719 4.836825 ACAAGGATGTCAGAATCACGATT 58.163 39.130 0.00 0.00 33.41 3.34
2584 2720 4.478206 ACAAGGATGTCAGAATCACGAT 57.522 40.909 0.00 0.00 33.41 3.73
2585 2721 3.961480 ACAAGGATGTCAGAATCACGA 57.039 42.857 0.00 0.00 33.41 4.35
2586 2722 3.996363 TGAACAAGGATGTCAGAATCACG 59.004 43.478 0.00 0.00 39.40 4.35
2587 2723 5.240891 TCTGAACAAGGATGTCAGAATCAC 58.759 41.667 0.24 0.00 39.40 3.06
2588 2724 5.488262 TCTGAACAAGGATGTCAGAATCA 57.512 39.130 0.24 0.00 39.40 2.57
2589 2725 5.702670 TGTTCTGAACAAGGATGTCAGAATC 59.297 40.000 20.14 11.22 45.05 2.52
2590 2726 5.624159 TGTTCTGAACAAGGATGTCAGAAT 58.376 37.500 20.14 0.00 45.05 2.40
2591 2727 5.034852 TGTTCTGAACAAGGATGTCAGAA 57.965 39.130 20.14 10.46 43.44 3.02
2592 2728 4.687901 TGTTCTGAACAAGGATGTCAGA 57.312 40.909 20.14 0.00 39.40 3.27
2698 2834 7.277098 CAGCCTCACATTATCCAAAAATCAAAG 59.723 37.037 0.00 0.00 0.00 2.77
2774 2911 1.538047 GACACATGCCACCTGTCATT 58.462 50.000 8.17 0.00 35.39 2.57
3080 3218 5.643348 TCGACTCCTAACTTTATCGTACACA 59.357 40.000 0.00 0.00 0.00 3.72
3103 3241 3.084786 CCTTGACATCCTTGGGTTTCTC 58.915 50.000 0.00 0.00 0.00 2.87
3401 3542 2.338577 ATCCAGGATTTGCTTCCTCG 57.661 50.000 0.00 0.00 44.54 4.63
3465 3606 0.036010 TAGCTTGCCTGAGTTCCTGC 60.036 55.000 0.00 0.00 0.00 4.85
3538 3698 9.432982 ACTCTTCTATCTTTGAAGGATGAGTAT 57.567 33.333 6.32 0.00 40.73 2.12
3545 3705 6.724441 TGTACCACTCTTCTATCTTTGAAGGA 59.276 38.462 0.00 0.00 40.73 3.36
3548 3708 9.871238 GTATTGTACCACTCTTCTATCTTTGAA 57.129 33.333 0.00 0.00 0.00 2.69
3578 3738 0.038983 TTCTTTCGACGGTCGCATCA 60.039 50.000 24.76 5.59 40.21 3.07
3579 3739 1.065358 TTTCTTTCGACGGTCGCATC 58.935 50.000 24.76 0.00 40.21 3.91
3590 3750 1.004292 AGCACCGTCGTTTTTCTTTCG 60.004 47.619 0.00 0.00 0.00 3.46
3593 3753 5.467735 AGTTATTAGCACCGTCGTTTTTCTT 59.532 36.000 0.00 0.00 0.00 2.52
3601 3761 2.606272 GGGAAAGTTATTAGCACCGTCG 59.394 50.000 0.00 0.00 0.00 5.12
3604 3764 4.881850 AGATTGGGAAAGTTATTAGCACCG 59.118 41.667 0.00 0.00 0.00 4.94
3607 3767 7.361713 CGTGAAAGATTGGGAAAGTTATTAGCA 60.362 37.037 0.00 0.00 0.00 3.49
3610 3770 6.943718 ACCGTGAAAGATTGGGAAAGTTATTA 59.056 34.615 0.00 0.00 0.00 0.98
3616 3776 4.069304 TGTACCGTGAAAGATTGGGAAAG 58.931 43.478 0.00 0.00 0.00 2.62
3619 3779 2.635915 ACTGTACCGTGAAAGATTGGGA 59.364 45.455 0.00 0.00 0.00 4.37
3653 3813 0.179134 AAGATCGTGAGCGCTACACC 60.179 55.000 24.53 15.54 38.14 4.16
3655 3815 0.526211 ACAAGATCGTGAGCGCTACA 59.474 50.000 11.50 7.79 38.14 2.74
3658 3818 1.095600 TCTACAAGATCGTGAGCGCT 58.904 50.000 11.27 11.27 38.14 5.92
3665 3825 2.797156 GCGATTGCATCTACAAGATCGT 59.203 45.455 13.00 0.00 42.15 3.73
3685 3845 0.368567 GTGCGTGTTGTTTTTGTGGC 59.631 50.000 0.00 0.00 0.00 5.01
3690 3850 0.456995 CGGGTGTGCGTGTTGTTTTT 60.457 50.000 0.00 0.00 0.00 1.94
3715 3875 2.095532 CGAAGATCGTCCACGTACTTCT 59.904 50.000 23.51 11.77 42.90 2.85
3723 3883 0.103208 ATCTGCCGAAGATCGTCCAC 59.897 55.000 2.90 0.00 42.27 4.02
3736 3896 2.105006 TCAGTTTCTGCTGATCTGCC 57.895 50.000 20.39 5.98 40.23 4.85
3752 3912 7.706179 GGTCAGAGATTGATTCTAGAGTTTCAG 59.294 40.741 0.00 0.00 38.29 3.02
3774 3934 3.295093 TGAGGCTTTGTGATTTTGGTCA 58.705 40.909 0.00 0.00 0.00 4.02
3837 3997 2.029918 TCGATGGATAGATCGGCAACTG 60.030 50.000 0.00 0.00 44.41 3.16
3878 4041 0.236449 CGTGTACGGGGCAGTTTTTC 59.764 55.000 0.00 0.00 35.37 2.29
3899 4062 4.258702 CACTATATATAGGGCCATCGGC 57.741 50.000 21.20 0.00 39.71 5.54
3974 9883 1.275291 CCGGTCAGCTTTTAGAGTCCA 59.725 52.381 0.00 0.00 0.00 4.02
4014 9923 8.395633 GCTAGTTACAAAAGTCAAAGTCTGAAA 58.604 33.333 0.00 0.00 35.22 2.69
4039 9948 2.066262 ACTAGTATGTGCGTGTGTTGC 58.934 47.619 0.00 0.00 0.00 4.17
4065 9974 9.208022 TGTGATCTAATGTCAAGTGTCTTTTAG 57.792 33.333 0.00 0.00 0.00 1.85
4088 9997 4.103357 GCAGTATAGTACAGGTTCGTGTG 58.897 47.826 8.16 0.00 31.46 3.82
4099 10008 9.595823 TTATTTCTTGGTTCAGCAGTATAGTAC 57.404 33.333 0.00 0.00 0.00 2.73
4106 10015 9.476202 GTTATTTTTATTTCTTGGTTCAGCAGT 57.524 29.630 0.00 0.00 0.00 4.40
4130 10039 7.551262 TCAGTTTCAACATACAAGTACTGTGTT 59.449 33.333 13.48 11.29 39.20 3.32
4135 10044 6.525629 AGCTCAGTTTCAACATACAAGTACT 58.474 36.000 0.00 0.00 0.00 2.73
4138 10047 5.368145 TGAGCTCAGTTTCAACATACAAGT 58.632 37.500 13.74 0.00 0.00 3.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.