Multiple sequence alignment - TraesCS7A01G194800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G194800 | chr7A | 100.000 | 4178 | 0 | 0 | 1 | 4178 | 154334941 | 154330764 | 0.000000e+00 | 7716.0 |
1 | TraesCS7A01G194800 | chr7A | 92.657 | 286 | 19 | 1 | 3893 | 4178 | 124031524 | 124031807 | 1.080000e-110 | 411.0 |
2 | TraesCS7A01G194800 | chr7A | 92.021 | 188 | 15 | 0 | 2418 | 2605 | 311837494 | 311837307 | 8.910000e-67 | 265.0 |
3 | TraesCS7A01G194800 | chr7A | 89.552 | 201 | 21 | 0 | 2415 | 2615 | 219543491 | 219543291 | 5.360000e-64 | 255.0 |
4 | TraesCS7A01G194800 | chr7D | 97.333 | 975 | 20 | 3 | 2607 | 3578 | 153124106 | 153123135 | 0.000000e+00 | 1652.0 |
5 | TraesCS7A01G194800 | chr7D | 86.168 | 1511 | 136 | 41 | 274 | 1743 | 153126319 | 153124841 | 0.000000e+00 | 1565.0 |
6 | TraesCS7A01G194800 | chr7D | 95.716 | 677 | 28 | 1 | 1741 | 2416 | 153124784 | 153124108 | 0.000000e+00 | 1088.0 |
7 | TraesCS7A01G194800 | chr7D | 79.470 | 302 | 48 | 11 | 500 | 790 | 153126137 | 153125839 | 7.080000e-48 | 202.0 |
8 | TraesCS7A01G194800 | chr7B | 85.251 | 1512 | 156 | 42 | 274 | 1743 | 115200577 | 115199091 | 0.000000e+00 | 1495.0 |
9 | TraesCS7A01G194800 | chr7B | 93.400 | 1000 | 43 | 12 | 2602 | 3578 | 115198365 | 115197366 | 0.000000e+00 | 1459.0 |
10 | TraesCS7A01G194800 | chr7B | 93.013 | 687 | 38 | 7 | 1741 | 2420 | 115199034 | 115198351 | 0.000000e+00 | 994.0 |
11 | TraesCS7A01G194800 | chr7B | 88.746 | 311 | 31 | 4 | 3572 | 3878 | 282254860 | 282255170 | 1.100000e-100 | 377.0 |
12 | TraesCS7A01G194800 | chr7B | 85.838 | 346 | 33 | 9 | 3599 | 3932 | 282252088 | 282252429 | 1.850000e-93 | 353.0 |
13 | TraesCS7A01G194800 | chr7B | 80.657 | 274 | 38 | 13 | 275 | 540 | 99591680 | 99591414 | 9.160000e-47 | 198.0 |
14 | TraesCS7A01G194800 | chr7B | 76.615 | 325 | 64 | 10 | 275 | 590 | 684933372 | 684933693 | 7.180000e-38 | 169.0 |
15 | TraesCS7A01G194800 | chr1B | 82.324 | 611 | 83 | 24 | 3579 | 4178 | 206114763 | 206114167 | 1.340000e-139 | 507.0 |
16 | TraesCS7A01G194800 | chr1B | 92.254 | 284 | 20 | 1 | 3894 | 4177 | 206102823 | 206102542 | 6.510000e-108 | 401.0 |
17 | TraesCS7A01G194800 | chr1B | 90.452 | 199 | 15 | 4 | 2410 | 2605 | 105938059 | 105938256 | 4.140000e-65 | 259.0 |
18 | TraesCS7A01G194800 | chr1B | 76.554 | 354 | 68 | 14 | 275 | 620 | 576512209 | 576511863 | 3.320000e-41 | 180.0 |
19 | TraesCS7A01G194800 | chr2B | 81.997 | 611 | 85 | 24 | 3579 | 4178 | 98426269 | 98426865 | 2.900000e-136 | 496.0 |
20 | TraesCS7A01G194800 | chr1D | 90.270 | 370 | 25 | 8 | 3571 | 3932 | 314389482 | 314389848 | 1.360000e-129 | 473.0 |
21 | TraesCS7A01G194800 | chr1D | 89.560 | 364 | 28 | 7 | 3576 | 3932 | 314386679 | 314387039 | 1.770000e-123 | 453.0 |
22 | TraesCS7A01G194800 | chr1D | 80.180 | 222 | 23 | 11 | 515 | 725 | 117051250 | 117051039 | 3.370000e-31 | 147.0 |
23 | TraesCS7A01G194800 | chr6D | 92.447 | 331 | 18 | 6 | 3578 | 3904 | 116964751 | 116965078 | 2.270000e-127 | 466.0 |
24 | TraesCS7A01G194800 | chr3B | 81.209 | 612 | 84 | 27 | 3571 | 4166 | 768797313 | 768797909 | 8.180000e-127 | 464.0 |
25 | TraesCS7A01G194800 | chr3B | 87.812 | 361 | 34 | 8 | 3579 | 3932 | 145412076 | 145412433 | 8.360000e-112 | 414.0 |
26 | TraesCS7A01G194800 | chr3B | 91.579 | 285 | 22 | 1 | 3894 | 4178 | 768794898 | 768795180 | 3.920000e-105 | 392.0 |
27 | TraesCS7A01G194800 | chr3B | 83.136 | 338 | 47 | 9 | 3576 | 3909 | 33587688 | 33587357 | 2.440000e-77 | 300.0 |
28 | TraesCS7A01G194800 | chr3B | 91.489 | 188 | 16 | 0 | 2418 | 2605 | 784606425 | 784606238 | 4.140000e-65 | 259.0 |
29 | TraesCS7A01G194800 | chr5D | 89.326 | 356 | 30 | 7 | 3582 | 3932 | 31267695 | 31267343 | 1.380000e-119 | 440.0 |
30 | TraesCS7A01G194800 | chr5D | 78.889 | 450 | 75 | 16 | 275 | 716 | 342964371 | 342963934 | 1.900000e-73 | 287.0 |
31 | TraesCS7A01G194800 | chr5B | 86.981 | 361 | 34 | 9 | 3579 | 3932 | 425541677 | 425541323 | 1.090000e-105 | 394.0 |
32 | TraesCS7A01G194800 | chr5B | 91.667 | 192 | 16 | 0 | 2418 | 2609 | 78360456 | 78360647 | 2.480000e-67 | 267.0 |
33 | TraesCS7A01G194800 | chr5B | 92.021 | 188 | 15 | 0 | 2418 | 2605 | 329939213 | 329939400 | 8.910000e-67 | 265.0 |
34 | TraesCS7A01G194800 | chr5B | 75.407 | 492 | 79 | 29 | 305 | 785 | 417003886 | 417003426 | 2.550000e-47 | 200.0 |
35 | TraesCS7A01G194800 | chr4B | 91.579 | 285 | 22 | 1 | 3894 | 4178 | 131953403 | 131953121 | 3.920000e-105 | 392.0 |
36 | TraesCS7A01G194800 | chr4B | 91.579 | 285 | 21 | 2 | 3894 | 4178 | 131956134 | 131955853 | 1.410000e-104 | 390.0 |
37 | TraesCS7A01G194800 | chr1A | 91.259 | 286 | 21 | 2 | 3893 | 4178 | 146044697 | 146044416 | 1.820000e-103 | 387.0 |
38 | TraesCS7A01G194800 | chr1A | 100.000 | 29 | 0 | 0 | 954 | 982 | 375216359 | 375216331 | 2.000000e-03 | 54.7 |
39 | TraesCS7A01G194800 | chr3D | 80.863 | 371 | 53 | 14 | 424 | 783 | 393649650 | 393649287 | 4.110000e-70 | 276.0 |
40 | TraesCS7A01G194800 | chr3D | 78.736 | 348 | 57 | 13 | 454 | 790 | 613831865 | 613832206 | 2.530000e-52 | 217.0 |
41 | TraesCS7A01G194800 | chr6B | 91.534 | 189 | 16 | 0 | 2417 | 2605 | 340596439 | 340596627 | 1.150000e-65 | 261.0 |
42 | TraesCS7A01G194800 | chr6B | 77.365 | 296 | 58 | 9 | 264 | 554 | 671094743 | 671094452 | 2.580000e-37 | 167.0 |
43 | TraesCS7A01G194800 | chr5A | 89.268 | 205 | 19 | 3 | 2411 | 2613 | 14937579 | 14937782 | 1.930000e-63 | 254.0 |
44 | TraesCS7A01G194800 | chr5A | 76.791 | 349 | 62 | 17 | 275 | 614 | 435003394 | 435003056 | 1.190000e-40 | 178.0 |
45 | TraesCS7A01G194800 | chr5A | 84.783 | 92 | 11 | 3 | 833 | 921 | 502550822 | 502550913 | 5.750000e-14 | 89.8 |
46 | TraesCS7A01G194800 | chr4A | 90.957 | 188 | 17 | 0 | 2418 | 2605 | 125230588 | 125230775 | 1.930000e-63 | 254.0 |
47 | TraesCS7A01G194800 | chr4A | 87.755 | 49 | 4 | 2 | 948 | 995 | 205221895 | 205221942 | 5.840000e-04 | 56.5 |
48 | TraesCS7A01G194800 | chr3A | 77.060 | 449 | 62 | 29 | 376 | 813 | 648304563 | 648304981 | 1.960000e-53 | 220.0 |
49 | TraesCS7A01G194800 | chr2D | 76.977 | 430 | 68 | 25 | 276 | 686 | 569154538 | 569154121 | 2.530000e-52 | 217.0 |
50 | TraesCS7A01G194800 | chr2D | 83.465 | 127 | 14 | 7 | 275 | 397 | 517654521 | 517654644 | 1.230000e-20 | 111.0 |
51 | TraesCS7A01G194800 | chr2A | 79.545 | 264 | 44 | 9 | 273 | 533 | 478390401 | 478390145 | 3.320000e-41 | 180.0 |
52 | TraesCS7A01G194800 | chr6A | 74.111 | 506 | 74 | 33 | 310 | 787 | 608121142 | 608120666 | 5.590000e-34 | 156.0 |
53 | TraesCS7A01G194800 | chrUn | 90.196 | 51 | 2 | 3 | 827 | 877 | 90113294 | 90113247 | 3.490000e-06 | 63.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G194800 | chr7A | 154330764 | 154334941 | 4177 | True | 7716.00 | 7716 | 100.000000 | 1 | 4178 | 1 | chr7A.!!$R1 | 4177 |
1 | TraesCS7A01G194800 | chr7D | 153123135 | 153126319 | 3184 | True | 1126.75 | 1652 | 89.671750 | 274 | 3578 | 4 | chr7D.!!$R1 | 3304 |
2 | TraesCS7A01G194800 | chr7B | 115197366 | 115200577 | 3211 | True | 1316.00 | 1495 | 90.554667 | 274 | 3578 | 3 | chr7B.!!$R2 | 3304 |
3 | TraesCS7A01G194800 | chr7B | 282252088 | 282255170 | 3082 | False | 365.00 | 377 | 87.292000 | 3572 | 3932 | 2 | chr7B.!!$F2 | 360 |
4 | TraesCS7A01G194800 | chr1B | 206114167 | 206114763 | 596 | True | 507.00 | 507 | 82.324000 | 3579 | 4178 | 1 | chr1B.!!$R2 | 599 |
5 | TraesCS7A01G194800 | chr2B | 98426269 | 98426865 | 596 | False | 496.00 | 496 | 81.997000 | 3579 | 4178 | 1 | chr2B.!!$F1 | 599 |
6 | TraesCS7A01G194800 | chr1D | 314386679 | 314389848 | 3169 | False | 463.00 | 473 | 89.915000 | 3571 | 3932 | 2 | chr1D.!!$F1 | 361 |
7 | TraesCS7A01G194800 | chr3B | 768794898 | 768797909 | 3011 | False | 428.00 | 464 | 86.394000 | 3571 | 4178 | 2 | chr3B.!!$F2 | 607 |
8 | TraesCS7A01G194800 | chr4B | 131953121 | 131956134 | 3013 | True | 391.00 | 392 | 91.579000 | 3894 | 4178 | 2 | chr4B.!!$R1 | 284 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
928 | 987 | 0.247736 | CTCGCTAGAAGCCCACAACT | 59.752 | 55.0 | 0.00 | 0.0 | 38.18 | 3.16 | F |
1632 | 1696 | 0.611896 | AAGGGATTGGGCCAAAGACG | 60.612 | 55.0 | 24.97 | 0.0 | 0.00 | 4.18 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2449 | 2585 | 0.551396 | TCCTACCATCAGAGCTCCGA | 59.449 | 55.0 | 10.93 | 6.0 | 0.0 | 4.55 | R |
3465 | 3606 | 0.036010 | TAGCTTGCCTGAGTTCCTGC | 60.036 | 55.0 | 0.00 | 0.0 | 0.0 | 4.85 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
35 | 36 | 9.520204 | TCTTTGCTTATTTCTTTGTTTCTCTTG | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 3.02 |
36 | 37 | 9.305925 | CTTTGCTTATTTCTTTGTTTCTCTTGT | 57.694 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
37 | 38 | 9.651913 | TTTGCTTATTTCTTTGTTTCTCTTGTT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
38 | 39 | 9.651913 | TTGCTTATTTCTTTGTTTCTCTTGTTT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 2.83 |
39 | 40 | 9.651913 | TGCTTATTTCTTTGTTTCTCTTGTTTT | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 2.43 |
45 | 46 | 8.970691 | TTCTTTGTTTCTCTTGTTTTTCTCTG | 57.029 | 30.769 | 0.00 | 0.00 | 0.00 | 3.35 |
46 | 47 | 7.029563 | TCTTTGTTTCTCTTGTTTTTCTCTGC | 58.970 | 34.615 | 0.00 | 0.00 | 0.00 | 4.26 |
47 | 48 | 5.248870 | TGTTTCTCTTGTTTTTCTCTGCC | 57.751 | 39.130 | 0.00 | 0.00 | 0.00 | 4.85 |
48 | 49 | 4.949856 | TGTTTCTCTTGTTTTTCTCTGCCT | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 4.75 |
49 | 50 | 5.418840 | TGTTTCTCTTGTTTTTCTCTGCCTT | 59.581 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
50 | 51 | 6.071391 | TGTTTCTCTTGTTTTTCTCTGCCTTT | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
51 | 52 | 6.530019 | TTCTCTTGTTTTTCTCTGCCTTTT | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
52 | 53 | 7.639113 | TTCTCTTGTTTTTCTCTGCCTTTTA | 57.361 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
53 | 54 | 7.823745 | TCTCTTGTTTTTCTCTGCCTTTTAT | 57.176 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
54 | 55 | 8.237811 | TCTCTTGTTTTTCTCTGCCTTTTATT | 57.762 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
55 | 56 | 8.695456 | TCTCTTGTTTTTCTCTGCCTTTTATTT | 58.305 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
56 | 57 | 9.317936 | CTCTTGTTTTTCTCTGCCTTTTATTTT | 57.682 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
57 | 58 | 9.665719 | TCTTGTTTTTCTCTGCCTTTTATTTTT | 57.334 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
58 | 59 | 9.706846 | CTTGTTTTTCTCTGCCTTTTATTTTTG | 57.293 | 29.630 | 0.00 | 0.00 | 0.00 | 2.44 |
59 | 60 | 7.693020 | TGTTTTTCTCTGCCTTTTATTTTTGC | 58.307 | 30.769 | 0.00 | 0.00 | 0.00 | 3.68 |
60 | 61 | 7.552330 | TGTTTTTCTCTGCCTTTTATTTTTGCT | 59.448 | 29.630 | 0.00 | 0.00 | 0.00 | 3.91 |
61 | 62 | 9.040939 | GTTTTTCTCTGCCTTTTATTTTTGCTA | 57.959 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
62 | 63 | 9.606631 | TTTTTCTCTGCCTTTTATTTTTGCTAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 3.09 |
63 | 64 | 9.777297 | TTTTCTCTGCCTTTTATTTTTGCTAAT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 1.73 |
64 | 65 | 9.777297 | TTTCTCTGCCTTTTATTTTTGCTAATT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 1.40 |
65 | 66 | 8.986477 | TCTCTGCCTTTTATTTTTGCTAATTC | 57.014 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
66 | 67 | 8.806146 | TCTCTGCCTTTTATTTTTGCTAATTCT | 58.194 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
67 | 68 | 9.428097 | CTCTGCCTTTTATTTTTGCTAATTCTT | 57.572 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
68 | 69 | 9.777297 | TCTGCCTTTTATTTTTGCTAATTCTTT | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
81 | 82 | 8.864069 | TTGCTAATTCTTTTTGTCGATTTTCA | 57.136 | 26.923 | 0.00 | 0.00 | 0.00 | 2.69 |
82 | 83 | 9.474920 | TTGCTAATTCTTTTTGTCGATTTTCAT | 57.525 | 25.926 | 0.00 | 0.00 | 0.00 | 2.57 |
83 | 84 | 9.128107 | TGCTAATTCTTTTTGTCGATTTTCATC | 57.872 | 29.630 | 0.00 | 0.00 | 0.00 | 2.92 |
84 | 85 | 8.587111 | GCTAATTCTTTTTGTCGATTTTCATCC | 58.413 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
85 | 86 | 7.566858 | AATTCTTTTTGTCGATTTTCATCCG | 57.433 | 32.000 | 0.00 | 0.00 | 0.00 | 4.18 |
86 | 87 | 5.682943 | TCTTTTTGTCGATTTTCATCCGT | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 4.69 |
87 | 88 | 6.067263 | TCTTTTTGTCGATTTTCATCCGTT | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 4.44 |
88 | 89 | 6.500041 | TCTTTTTGTCGATTTTCATCCGTTT | 58.500 | 32.000 | 0.00 | 0.00 | 0.00 | 3.60 |
89 | 90 | 6.975772 | TCTTTTTGTCGATTTTCATCCGTTTT | 59.024 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
90 | 91 | 6.741448 | TTTTGTCGATTTTCATCCGTTTTC | 57.259 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
91 | 92 | 5.682943 | TTGTCGATTTTCATCCGTTTTCT | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
92 | 93 | 5.682943 | TGTCGATTTTCATCCGTTTTCTT | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
93 | 94 | 6.067263 | TGTCGATTTTCATCCGTTTTCTTT | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
94 | 95 | 6.500041 | TGTCGATTTTCATCCGTTTTCTTTT | 58.500 | 32.000 | 0.00 | 0.00 | 0.00 | 2.27 |
95 | 96 | 6.975772 | TGTCGATTTTCATCCGTTTTCTTTTT | 59.024 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
121 | 122 | 9.862371 | TTGTTCAACACATGTTAACTTTATTGT | 57.138 | 25.926 | 7.22 | 1.45 | 36.32 | 2.71 |
239 | 240 | 7.872163 | TTTTGATGTCTGCATTTTCATACAC | 57.128 | 32.000 | 0.00 | 0.00 | 35.07 | 2.90 |
240 | 241 | 6.572167 | TTGATGTCTGCATTTTCATACACA | 57.428 | 33.333 | 0.00 | 0.00 | 35.07 | 3.72 |
241 | 242 | 6.762702 | TGATGTCTGCATTTTCATACACAT | 57.237 | 33.333 | 0.00 | 0.00 | 35.07 | 3.21 |
242 | 243 | 7.160547 | TGATGTCTGCATTTTCATACACATT | 57.839 | 32.000 | 0.00 | 0.00 | 35.07 | 2.71 |
243 | 244 | 7.030768 | TGATGTCTGCATTTTCATACACATTG | 58.969 | 34.615 | 0.00 | 0.00 | 35.07 | 2.82 |
244 | 245 | 6.330004 | TGTCTGCATTTTCATACACATTGT | 57.670 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
245 | 246 | 6.151004 | TGTCTGCATTTTCATACACATTGTG | 58.849 | 36.000 | 15.18 | 15.18 | 39.75 | 3.33 |
246 | 247 | 5.061311 | GTCTGCATTTTCATACACATTGTGC | 59.939 | 40.000 | 16.62 | 0.00 | 36.98 | 4.57 |
247 | 248 | 4.879598 | TGCATTTTCATACACATTGTGCA | 58.120 | 34.783 | 16.62 | 4.26 | 36.98 | 4.57 |
248 | 249 | 5.480205 | TGCATTTTCATACACATTGTGCAT | 58.520 | 33.333 | 16.62 | 6.70 | 36.98 | 3.96 |
249 | 250 | 5.932883 | TGCATTTTCATACACATTGTGCATT | 59.067 | 32.000 | 16.62 | 0.21 | 36.98 | 3.56 |
250 | 251 | 6.427242 | TGCATTTTCATACACATTGTGCATTT | 59.573 | 30.769 | 16.62 | 0.00 | 36.98 | 2.32 |
251 | 252 | 7.041303 | TGCATTTTCATACACATTGTGCATTTT | 60.041 | 29.630 | 16.62 | 0.00 | 36.98 | 1.82 |
252 | 253 | 7.804129 | GCATTTTCATACACATTGTGCATTTTT | 59.196 | 29.630 | 16.62 | 0.00 | 36.98 | 1.94 |
565 | 570 | 8.537049 | CATGTTTTGAATACATGGTCAACATT | 57.463 | 30.769 | 17.42 | 0.00 | 45.72 | 2.71 |
566 | 571 | 8.991026 | CATGTTTTGAATACATGGTCAACATTT | 58.009 | 29.630 | 17.42 | 0.00 | 45.72 | 2.32 |
702 | 709 | 8.821686 | AATACATGATCCACTTTTTCCATACA | 57.178 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
703 | 710 | 6.515272 | ACATGATCCACTTTTTCCATACAC | 57.485 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
704 | 711 | 6.009589 | ACATGATCCACTTTTTCCATACACA | 58.990 | 36.000 | 0.00 | 0.00 | 0.00 | 3.72 |
705 | 712 | 6.664816 | ACATGATCCACTTTTTCCATACACAT | 59.335 | 34.615 | 0.00 | 0.00 | 0.00 | 3.21 |
879 | 923 | 4.738998 | TGGGCCGGCACATCTTGG | 62.739 | 66.667 | 31.83 | 0.00 | 0.00 | 3.61 |
886 | 930 | 3.512516 | GCACATCTTGGGCCTCGC | 61.513 | 66.667 | 4.53 | 0.00 | 41.97 | 5.03 |
891 | 935 | 1.094073 | CATCTTGGGCCTCGCTTCAG | 61.094 | 60.000 | 4.53 | 0.00 | 0.00 | 3.02 |
928 | 987 | 0.247736 | CTCGCTAGAAGCCCACAACT | 59.752 | 55.000 | 0.00 | 0.00 | 38.18 | 3.16 |
955 | 1014 | 3.966543 | ACTTGCCCTTCCCCACCG | 61.967 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
996 | 1055 | 3.812019 | CTCTACGACGCAGCCGGT | 61.812 | 66.667 | 1.90 | 0.00 | 39.22 | 5.28 |
1257 | 1316 | 2.352032 | CGTCACCACCCTCCTCTCC | 61.352 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
1391 | 1455 | 3.369997 | CCCCTTCCTGAAGCTTCTAGAAC | 60.370 | 52.174 | 26.09 | 0.58 | 37.11 | 3.01 |
1395 | 1459 | 2.192263 | CCTGAAGCTTCTAGAACCCCT | 58.808 | 52.381 | 26.09 | 0.00 | 0.00 | 4.79 |
1464 | 1528 | 2.451294 | GGGATGGGGCTGGAGGAT | 60.451 | 66.667 | 0.00 | 0.00 | 0.00 | 3.24 |
1521 | 1585 | 3.164269 | AGGATCCGGGCGATGCTT | 61.164 | 61.111 | 5.98 | 0.00 | 46.74 | 3.91 |
1632 | 1696 | 0.611896 | AAGGGATTGGGCCAAAGACG | 60.612 | 55.000 | 24.97 | 0.00 | 0.00 | 4.18 |
1651 | 1715 | 4.877251 | AGACGGTGAGTTACTACATCTCTC | 59.123 | 45.833 | 0.00 | 0.00 | 0.00 | 3.20 |
1654 | 1718 | 4.025563 | CGGTGAGTTACTACATCTCTCTCG | 60.026 | 50.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1689 | 1758 | 3.558931 | TGAGCTTTCTGTTCTGGTTGA | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
1708 | 1777 | 5.245531 | GTTGATGGAGGTATGTGAAGTTCA | 58.754 | 41.667 | 0.08 | 0.08 | 0.00 | 3.18 |
1710 | 1779 | 4.532126 | TGATGGAGGTATGTGAAGTTCAGT | 59.468 | 41.667 | 5.62 | 0.76 | 0.00 | 3.41 |
1791 | 1920 | 2.623889 | AGTCAGCGGATTATTCGTAGCT | 59.376 | 45.455 | 0.00 | 0.00 | 35.06 | 3.32 |
1794 | 1923 | 4.980434 | GTCAGCGGATTATTCGTAGCTTTA | 59.020 | 41.667 | 0.00 | 0.00 | 32.05 | 1.85 |
1825 | 1954 | 6.839124 | TTCTGTACTTAATCACCGGAACTA | 57.161 | 37.500 | 9.46 | 0.00 | 0.00 | 2.24 |
1933 | 2066 | 4.485163 | CATATGACCTCATAACGATCGCA | 58.515 | 43.478 | 16.60 | 3.35 | 41.60 | 5.10 |
2302 | 2437 | 6.127730 | CCGACTACAATTTTAGCCTTCCAAAT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
2348 | 2484 | 4.870123 | ATTGAGCACAATGGTTGCTAAA | 57.130 | 36.364 | 8.67 | 0.00 | 43.90 | 1.85 |
2349 | 2485 | 4.870123 | TTGAGCACAATGGTTGCTAAAT | 57.130 | 36.364 | 0.00 | 0.00 | 39.21 | 1.40 |
2416 | 2552 | 5.803020 | ACTCAAACAGACTTGTTCAGAAC | 57.197 | 39.130 | 6.32 | 6.32 | 46.54 | 3.01 |
2417 | 2553 | 4.636206 | ACTCAAACAGACTTGTTCAGAACC | 59.364 | 41.667 | 10.93 | 0.00 | 46.54 | 3.62 |
2418 | 2554 | 4.584874 | TCAAACAGACTTGTTCAGAACCA | 58.415 | 39.130 | 10.93 | 0.00 | 46.54 | 3.67 |
2419 | 2555 | 5.007034 | TCAAACAGACTTGTTCAGAACCAA | 58.993 | 37.500 | 10.93 | 4.73 | 46.54 | 3.67 |
2420 | 2556 | 5.123820 | TCAAACAGACTTGTTCAGAACCAAG | 59.876 | 40.000 | 10.93 | 14.88 | 46.54 | 3.61 |
2421 | 2557 | 3.545703 | ACAGACTTGTTCAGAACCAAGG | 58.454 | 45.455 | 20.44 | 11.23 | 32.28 | 3.61 |
2422 | 2558 | 3.054361 | ACAGACTTGTTCAGAACCAAGGT | 60.054 | 43.478 | 20.44 | 8.53 | 32.28 | 3.50 |
2423 | 2559 | 3.947834 | CAGACTTGTTCAGAACCAAGGTT | 59.052 | 43.478 | 20.44 | 3.73 | 41.54 | 3.50 |
2424 | 2560 | 6.376209 | ACAGACTTGTTCAGAACCAAGGTTC | 61.376 | 44.000 | 21.47 | 21.47 | 43.59 | 3.62 |
2437 | 2573 | 6.923199 | AACCAAGGTTCTCAAAATCATGAT | 57.077 | 33.333 | 1.18 | 1.18 | 32.09 | 2.45 |
2438 | 2574 | 6.923199 | ACCAAGGTTCTCAAAATCATGATT | 57.077 | 33.333 | 15.36 | 15.36 | 0.00 | 2.57 |
2439 | 2575 | 6.928520 | ACCAAGGTTCTCAAAATCATGATTC | 58.071 | 36.000 | 20.95 | 6.92 | 0.00 | 2.52 |
2440 | 2576 | 6.723052 | ACCAAGGTTCTCAAAATCATGATTCT | 59.277 | 34.615 | 20.95 | 4.73 | 0.00 | 2.40 |
2441 | 2577 | 7.033791 | CCAAGGTTCTCAAAATCATGATTCTG | 58.966 | 38.462 | 20.95 | 17.60 | 0.00 | 3.02 |
2442 | 2578 | 7.094075 | CCAAGGTTCTCAAAATCATGATTCTGA | 60.094 | 37.037 | 20.53 | 20.53 | 0.00 | 3.27 |
2443 | 2579 | 8.301720 | CAAGGTTCTCAAAATCATGATTCTGAA | 58.698 | 33.333 | 21.70 | 17.99 | 28.48 | 3.02 |
2444 | 2580 | 8.591114 | AGGTTCTCAAAATCATGATTCTGAAT | 57.409 | 30.769 | 21.70 | 1.81 | 28.48 | 2.57 |
2445 | 2581 | 8.684520 | AGGTTCTCAAAATCATGATTCTGAATC | 58.315 | 33.333 | 21.70 | 20.74 | 38.40 | 2.52 |
2446 | 2582 | 7.642978 | GGTTCTCAAAATCATGATTCTGAATCG | 59.357 | 37.037 | 21.70 | 12.65 | 40.84 | 3.34 |
2447 | 2583 | 7.255491 | TCTCAAAATCATGATTCTGAATCGG | 57.745 | 36.000 | 21.70 | 17.04 | 40.84 | 4.18 |
2448 | 2584 | 7.049754 | TCTCAAAATCATGATTCTGAATCGGA | 58.950 | 34.615 | 21.70 | 20.74 | 40.84 | 4.55 |
2449 | 2585 | 7.718314 | TCTCAAAATCATGATTCTGAATCGGAT | 59.282 | 33.333 | 21.70 | 21.73 | 40.84 | 4.18 |
2450 | 2586 | 7.868775 | TCAAAATCATGATTCTGAATCGGATC | 58.131 | 34.615 | 19.77 | 8.69 | 40.84 | 3.36 |
2451 | 2587 | 6.477669 | AAATCATGATTCTGAATCGGATCG | 57.522 | 37.500 | 24.91 | 13.77 | 40.84 | 3.69 |
2452 | 2588 | 3.917988 | TCATGATTCTGAATCGGATCGG | 58.082 | 45.455 | 21.70 | 9.89 | 40.84 | 4.18 |
2453 | 2589 | 3.573967 | TCATGATTCTGAATCGGATCGGA | 59.426 | 43.478 | 21.70 | 5.34 | 40.84 | 4.55 |
2454 | 2590 | 3.650070 | TGATTCTGAATCGGATCGGAG | 57.350 | 47.619 | 21.70 | 0.00 | 40.84 | 4.63 |
2455 | 2591 | 2.288457 | TGATTCTGAATCGGATCGGAGC | 60.288 | 50.000 | 21.70 | 4.40 | 40.84 | 4.70 |
2456 | 2592 | 1.403814 | TTCTGAATCGGATCGGAGCT | 58.596 | 50.000 | 9.03 | 0.00 | 36.15 | 4.09 |
2457 | 2593 | 0.955178 | TCTGAATCGGATCGGAGCTC | 59.045 | 55.000 | 4.71 | 4.71 | 31.19 | 4.09 |
2458 | 2594 | 0.958091 | CTGAATCGGATCGGAGCTCT | 59.042 | 55.000 | 14.64 | 0.00 | 0.00 | 4.09 |
2459 | 2595 | 0.670706 | TGAATCGGATCGGAGCTCTG | 59.329 | 55.000 | 16.98 | 16.98 | 0.00 | 3.35 |
2460 | 2596 | 0.955178 | GAATCGGATCGGAGCTCTGA | 59.045 | 55.000 | 27.03 | 27.03 | 35.43 | 3.27 |
2461 | 2597 | 1.543802 | GAATCGGATCGGAGCTCTGAT | 59.456 | 52.381 | 33.44 | 33.44 | 44.19 | 2.90 |
2462 | 2598 | 0.887247 | ATCGGATCGGAGCTCTGATG | 59.113 | 55.000 | 36.97 | 24.93 | 41.75 | 3.07 |
2463 | 2599 | 1.175347 | TCGGATCGGAGCTCTGATGG | 61.175 | 60.000 | 36.97 | 27.55 | 41.75 | 3.51 |
2464 | 2600 | 1.459455 | CGGATCGGAGCTCTGATGGT | 61.459 | 60.000 | 36.97 | 18.91 | 41.75 | 3.55 |
2465 | 2601 | 1.621992 | GGATCGGAGCTCTGATGGTA | 58.378 | 55.000 | 36.97 | 12.85 | 41.75 | 3.25 |
2466 | 2602 | 1.543802 | GGATCGGAGCTCTGATGGTAG | 59.456 | 57.143 | 36.97 | 9.16 | 41.75 | 3.18 |
2467 | 2603 | 1.543802 | GATCGGAGCTCTGATGGTAGG | 59.456 | 57.143 | 36.97 | 6.40 | 41.75 | 3.18 |
2468 | 2604 | 0.551396 | TCGGAGCTCTGATGGTAGGA | 59.449 | 55.000 | 21.62 | 0.00 | 0.00 | 2.94 |
2469 | 2605 | 1.145945 | TCGGAGCTCTGATGGTAGGAT | 59.854 | 52.381 | 21.62 | 0.00 | 0.00 | 3.24 |
2470 | 2606 | 2.375509 | TCGGAGCTCTGATGGTAGGATA | 59.624 | 50.000 | 21.62 | 0.00 | 0.00 | 2.59 |
2471 | 2607 | 2.752354 | CGGAGCTCTGATGGTAGGATAG | 59.248 | 54.545 | 18.26 | 0.00 | 0.00 | 2.08 |
2472 | 2608 | 2.495669 | GGAGCTCTGATGGTAGGATAGC | 59.504 | 54.545 | 14.64 | 0.00 | 40.09 | 2.97 |
2487 | 2623 | 8.910351 | GGTAGGATAGCAAATTGTAGAATCTT | 57.090 | 34.615 | 0.00 | 0.00 | 39.30 | 2.40 |
2488 | 2624 | 9.998106 | GGTAGGATAGCAAATTGTAGAATCTTA | 57.002 | 33.333 | 0.00 | 0.00 | 39.30 | 2.10 |
2502 | 2638 | 8.693120 | TGTAGAATCTTAACTATCAGGATCGT | 57.307 | 34.615 | 0.00 | 0.00 | 0.00 | 3.73 |
2503 | 2639 | 9.788889 | TGTAGAATCTTAACTATCAGGATCGTA | 57.211 | 33.333 | 0.00 | 0.00 | 0.00 | 3.43 |
2506 | 2642 | 9.575868 | AGAATCTTAACTATCAGGATCGTAGAA | 57.424 | 33.333 | 0.00 | 0.00 | 43.58 | 2.10 |
2508 | 2644 | 9.968870 | AATCTTAACTATCAGGATCGTAGAAAC | 57.031 | 33.333 | 0.00 | 0.00 | 43.58 | 2.78 |
2509 | 2645 | 8.749026 | TCTTAACTATCAGGATCGTAGAAACT | 57.251 | 34.615 | 0.00 | 0.00 | 43.58 | 2.66 |
2510 | 2646 | 9.186837 | TCTTAACTATCAGGATCGTAGAAACTT | 57.813 | 33.333 | 0.00 | 0.00 | 43.58 | 2.66 |
2513 | 2649 | 8.749026 | AACTATCAGGATCGTAGAAACTTAGA | 57.251 | 34.615 | 0.00 | 0.00 | 43.58 | 2.10 |
2514 | 2650 | 8.927675 | ACTATCAGGATCGTAGAAACTTAGAT | 57.072 | 34.615 | 0.00 | 0.00 | 43.58 | 1.98 |
2515 | 2651 | 9.357161 | ACTATCAGGATCGTAGAAACTTAGATT | 57.643 | 33.333 | 0.00 | 0.00 | 43.58 | 2.40 |
2516 | 2652 | 9.834628 | CTATCAGGATCGTAGAAACTTAGATTC | 57.165 | 37.037 | 0.00 | 0.00 | 43.58 | 2.52 |
2517 | 2653 | 7.883391 | TCAGGATCGTAGAAACTTAGATTCT | 57.117 | 36.000 | 9.59 | 9.59 | 43.58 | 2.40 |
2518 | 2654 | 8.975663 | TCAGGATCGTAGAAACTTAGATTCTA | 57.024 | 34.615 | 7.70 | 7.70 | 43.58 | 2.10 |
2519 | 2655 | 9.575868 | TCAGGATCGTAGAAACTTAGATTCTAT | 57.424 | 33.333 | 13.63 | 1.40 | 43.58 | 1.98 |
2520 | 2656 | 9.619316 | CAGGATCGTAGAAACTTAGATTCTATG | 57.381 | 37.037 | 19.17 | 19.17 | 43.58 | 2.23 |
2525 | 2661 | 8.963725 | TCGTAGAAACTTAGATTCTATGAACCA | 58.036 | 33.333 | 23.04 | 8.34 | 45.51 | 3.67 |
2526 | 2662 | 9.239002 | CGTAGAAACTTAGATTCTATGAACCAG | 57.761 | 37.037 | 20.05 | 1.03 | 44.00 | 4.00 |
2539 | 2675 | 6.669278 | TCTATGAACCAGAATCGTAGAATCG | 58.331 | 40.000 | 3.62 | 0.00 | 42.14 | 3.34 |
2540 | 2676 | 4.976224 | TGAACCAGAATCGTAGAATCGA | 57.024 | 40.909 | 0.00 | 0.00 | 42.14 | 3.59 |
2541 | 2677 | 5.319140 | TGAACCAGAATCGTAGAATCGAA | 57.681 | 39.130 | 0.00 | 0.00 | 42.14 | 3.71 |
2542 | 2678 | 5.340803 | TGAACCAGAATCGTAGAATCGAAG | 58.659 | 41.667 | 0.00 | 0.00 | 42.14 | 3.79 |
2543 | 2679 | 4.308899 | ACCAGAATCGTAGAATCGAAGG | 57.691 | 45.455 | 0.00 | 0.00 | 42.14 | 3.46 |
2544 | 2680 | 3.068307 | ACCAGAATCGTAGAATCGAAGGG | 59.932 | 47.826 | 0.00 | 0.00 | 42.14 | 3.95 |
2545 | 2681 | 3.068307 | CCAGAATCGTAGAATCGAAGGGT | 59.932 | 47.826 | 0.00 | 0.00 | 42.14 | 4.34 |
2546 | 2682 | 4.441634 | CCAGAATCGTAGAATCGAAGGGTT | 60.442 | 45.833 | 0.00 | 0.00 | 42.14 | 4.11 |
2547 | 2683 | 5.109903 | CAGAATCGTAGAATCGAAGGGTTT | 58.890 | 41.667 | 0.00 | 0.00 | 42.14 | 3.27 |
2548 | 2684 | 6.270815 | CAGAATCGTAGAATCGAAGGGTTTA | 58.729 | 40.000 | 0.00 | 0.00 | 42.14 | 2.01 |
2549 | 2685 | 6.418226 | CAGAATCGTAGAATCGAAGGGTTTAG | 59.582 | 42.308 | 0.00 | 0.00 | 42.14 | 1.85 |
2550 | 2686 | 5.848833 | ATCGTAGAATCGAAGGGTTTAGT | 57.151 | 39.130 | 0.00 | 0.00 | 43.58 | 2.24 |
2551 | 2687 | 5.649782 | TCGTAGAATCGAAGGGTTTAGTT | 57.350 | 39.130 | 0.00 | 0.00 | 36.89 | 2.24 |
2552 | 2688 | 6.029346 | TCGTAGAATCGAAGGGTTTAGTTT | 57.971 | 37.500 | 0.00 | 0.00 | 36.89 | 2.66 |
2553 | 2689 | 5.865552 | TCGTAGAATCGAAGGGTTTAGTTTG | 59.134 | 40.000 | 0.00 | 0.00 | 36.89 | 2.93 |
2554 | 2690 | 5.063060 | CGTAGAATCGAAGGGTTTAGTTTGG | 59.937 | 44.000 | 0.00 | 0.00 | 0.00 | 3.28 |
2555 | 2691 | 5.237236 | AGAATCGAAGGGTTTAGTTTGGA | 57.763 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
2556 | 2692 | 5.816682 | AGAATCGAAGGGTTTAGTTTGGAT | 58.183 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
2557 | 2693 | 5.880887 | AGAATCGAAGGGTTTAGTTTGGATC | 59.119 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2558 | 2694 | 3.592059 | TCGAAGGGTTTAGTTTGGATCG | 58.408 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
2559 | 2695 | 3.007182 | TCGAAGGGTTTAGTTTGGATCGT | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.73 |
2560 | 2696 | 4.220382 | TCGAAGGGTTTAGTTTGGATCGTA | 59.780 | 41.667 | 0.00 | 0.00 | 0.00 | 3.43 |
2561 | 2697 | 4.931002 | CGAAGGGTTTAGTTTGGATCGTAA | 59.069 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
2562 | 2698 | 5.409214 | CGAAGGGTTTAGTTTGGATCGTAAA | 59.591 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
2563 | 2699 | 6.401796 | CGAAGGGTTTAGTTTGGATCGTAAAG | 60.402 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
2564 | 2700 | 5.872963 | AGGGTTTAGTTTGGATCGTAAAGT | 58.127 | 37.500 | 6.63 | 6.63 | 0.00 | 2.66 |
2565 | 2701 | 5.936372 | AGGGTTTAGTTTGGATCGTAAAGTC | 59.064 | 40.000 | 5.09 | 0.00 | 0.00 | 3.01 |
2566 | 2702 | 5.163923 | GGGTTTAGTTTGGATCGTAAAGTCG | 60.164 | 44.000 | 5.09 | 0.00 | 0.00 | 4.18 |
2567 | 2703 | 5.406477 | GGTTTAGTTTGGATCGTAAAGTCGT | 59.594 | 40.000 | 5.09 | 0.00 | 0.00 | 4.34 |
2568 | 2704 | 6.586082 | GGTTTAGTTTGGATCGTAAAGTCGTA | 59.414 | 38.462 | 5.09 | 0.00 | 0.00 | 3.43 |
2569 | 2705 | 7.201384 | GGTTTAGTTTGGATCGTAAAGTCGTAG | 60.201 | 40.741 | 5.09 | 0.00 | 0.00 | 3.51 |
2570 | 2706 | 5.633830 | AGTTTGGATCGTAAAGTCGTAGA | 57.366 | 39.130 | 0.00 | 0.00 | 0.00 | 2.59 |
2571 | 2707 | 6.017400 | AGTTTGGATCGTAAAGTCGTAGAA | 57.983 | 37.500 | 0.00 | 0.00 | 39.69 | 2.10 |
2572 | 2708 | 6.628185 | AGTTTGGATCGTAAAGTCGTAGAAT | 58.372 | 36.000 | 0.00 | 0.00 | 39.69 | 2.40 |
2573 | 2709 | 6.750963 | AGTTTGGATCGTAAAGTCGTAGAATC | 59.249 | 38.462 | 0.00 | 0.00 | 39.69 | 2.52 |
2574 | 2710 | 4.840911 | TGGATCGTAAAGTCGTAGAATCG | 58.159 | 43.478 | 0.00 | 0.00 | 39.69 | 3.34 |
2575 | 2711 | 4.333649 | TGGATCGTAAAGTCGTAGAATCGT | 59.666 | 41.667 | 0.00 | 0.00 | 39.69 | 3.73 |
2576 | 2712 | 5.523552 | TGGATCGTAAAGTCGTAGAATCGTA | 59.476 | 40.000 | 0.00 | 0.00 | 39.69 | 3.43 |
2577 | 2713 | 6.203530 | TGGATCGTAAAGTCGTAGAATCGTAT | 59.796 | 38.462 | 0.00 | 0.00 | 39.69 | 3.06 |
2578 | 2714 | 7.384932 | TGGATCGTAAAGTCGTAGAATCGTATA | 59.615 | 37.037 | 0.00 | 0.00 | 39.69 | 1.47 |
2579 | 2715 | 8.223769 | GGATCGTAAAGTCGTAGAATCGTATAA | 58.776 | 37.037 | 0.00 | 0.00 | 39.69 | 0.98 |
2580 | 2716 | 8.925788 | ATCGTAAAGTCGTAGAATCGTATAAC | 57.074 | 34.615 | 0.00 | 0.00 | 39.69 | 1.89 |
2581 | 2717 | 7.905126 | TCGTAAAGTCGTAGAATCGTATAACA | 58.095 | 34.615 | 0.00 | 0.00 | 39.69 | 2.41 |
2582 | 2718 | 8.058328 | TCGTAAAGTCGTAGAATCGTATAACAG | 58.942 | 37.037 | 0.00 | 0.00 | 39.69 | 3.16 |
2583 | 2719 | 8.058328 | CGTAAAGTCGTAGAATCGTATAACAGA | 58.942 | 37.037 | 0.00 | 0.00 | 39.69 | 3.41 |
2584 | 2720 | 9.708222 | GTAAAGTCGTAGAATCGTATAACAGAA | 57.292 | 33.333 | 0.00 | 0.00 | 39.69 | 3.02 |
2586 | 2722 | 9.448294 | AAAGTCGTAGAATCGTATAACAGAATC | 57.552 | 33.333 | 0.00 | 0.00 | 39.69 | 2.52 |
2587 | 2723 | 7.289395 | AGTCGTAGAATCGTATAACAGAATCG | 58.711 | 38.462 | 0.00 | 0.00 | 39.69 | 3.34 |
2588 | 2724 | 7.042187 | AGTCGTAGAATCGTATAACAGAATCGT | 60.042 | 37.037 | 0.00 | 0.00 | 39.69 | 3.73 |
2589 | 2725 | 7.058128 | GTCGTAGAATCGTATAACAGAATCGTG | 59.942 | 40.741 | 0.00 | 0.00 | 39.69 | 4.35 |
2590 | 2726 | 7.042523 | TCGTAGAATCGTATAACAGAATCGTGA | 60.043 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
2591 | 2727 | 7.745155 | CGTAGAATCGTATAACAGAATCGTGAT | 59.255 | 37.037 | 0.00 | 0.00 | 0.00 | 3.06 |
2592 | 2728 | 9.395707 | GTAGAATCGTATAACAGAATCGTGATT | 57.604 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
2593 | 2729 | 8.508800 | AGAATCGTATAACAGAATCGTGATTC | 57.491 | 34.615 | 13.46 | 13.46 | 45.66 | 2.52 |
2679 | 2815 | 7.432869 | TCTGCATGCTGTTTAATTAGTTGTTT | 58.567 | 30.769 | 20.33 | 0.00 | 0.00 | 2.83 |
3080 | 3218 | 4.154942 | ACTCATGGGAAGCTTTGTCAATT | 58.845 | 39.130 | 0.00 | 0.00 | 0.00 | 2.32 |
3103 | 3241 | 5.872635 | TGTGTACGATAAAGTTAGGAGTCG | 58.127 | 41.667 | 0.00 | 0.00 | 35.42 | 4.18 |
3152 | 3290 | 3.072476 | TGTCCCTTAGCAAGCTACTGTTT | 59.928 | 43.478 | 0.40 | 0.00 | 0.00 | 2.83 |
3401 | 3542 | 5.712217 | TGTATAACTGAAACATGCTACGC | 57.288 | 39.130 | 0.00 | 0.00 | 0.00 | 4.42 |
3465 | 3606 | 1.002430 | TCTCAAGCTACTGCCCTGTTG | 59.998 | 52.381 | 0.00 | 0.00 | 40.80 | 3.33 |
3538 | 3698 | 4.022935 | CAGCACTCAAACAAGATAAAGCCA | 60.023 | 41.667 | 0.00 | 0.00 | 0.00 | 4.75 |
3545 | 3705 | 7.831193 | ACTCAAACAAGATAAAGCCATACTCAT | 59.169 | 33.333 | 0.00 | 0.00 | 0.00 | 2.90 |
3548 | 3708 | 6.506538 | ACAAGATAAAGCCATACTCATCCT | 57.493 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
3590 | 3750 | 0.102481 | ATACCAGTGATGCGACCGTC | 59.898 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
3593 | 3753 | 1.443702 | CAGTGATGCGACCGTCGAA | 60.444 | 57.895 | 24.78 | 15.28 | 43.74 | 3.71 |
3601 | 3761 | 1.004715 | TGCGACCGTCGAAAGAAAAAC | 60.005 | 47.619 | 24.78 | 3.94 | 43.74 | 2.43 |
3610 | 3770 | 1.004292 | CGAAAGAAAAACGACGGTGCT | 60.004 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
3616 | 3776 | 5.273523 | AGAAAAACGACGGTGCTAATAAC | 57.726 | 39.130 | 0.00 | 0.00 | 0.00 | 1.89 |
3619 | 3779 | 5.678132 | AAAACGACGGTGCTAATAACTTT | 57.322 | 34.783 | 0.00 | 0.00 | 0.00 | 2.66 |
3638 | 3798 | 3.773418 | TTCCCAATCTTTCACGGTACA | 57.227 | 42.857 | 0.00 | 0.00 | 0.00 | 2.90 |
3639 | 3799 | 3.328382 | TCCCAATCTTTCACGGTACAG | 57.672 | 47.619 | 0.00 | 0.00 | 0.00 | 2.74 |
3653 | 3813 | 2.132762 | GGTACAGTGTCACCTGAAACG | 58.867 | 52.381 | 0.00 | 0.00 | 37.36 | 3.60 |
3655 | 3815 | 0.539986 | ACAGTGTCACCTGAAACGGT | 59.460 | 50.000 | 0.00 | 0.00 | 37.36 | 4.83 |
3665 | 3825 | 0.666274 | CTGAAACGGTGTAGCGCTCA | 60.666 | 55.000 | 16.34 | 9.61 | 0.00 | 4.26 |
3715 | 3875 | 2.023414 | AACACGCACACCCGAGAGAA | 62.023 | 55.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3723 | 3883 | 1.811359 | ACACCCGAGAGAAGAAGTACG | 59.189 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
3736 | 3896 | 2.095532 | AGAAGTACGTGGACGATCTTCG | 59.904 | 50.000 | 21.78 | 0.00 | 45.74 | 3.79 |
3752 | 3912 | 1.396301 | CTTCGGCAGATCAGCAGAAAC | 59.604 | 52.381 | 21.98 | 0.97 | 45.47 | 2.78 |
3774 | 3934 | 9.651913 | GAAACTGAAACTCTAGAATCAATCTCT | 57.348 | 33.333 | 0.00 | 0.00 | 39.71 | 3.10 |
3837 | 3997 | 2.111251 | GCGGCTTGGAGATACCCC | 59.889 | 66.667 | 0.00 | 0.00 | 38.00 | 4.95 |
3878 | 4041 | 5.123227 | TCGATGGAAATAACCTAGCCAAAG | 58.877 | 41.667 | 0.00 | 0.00 | 31.53 | 2.77 |
3882 | 4045 | 7.362574 | CGATGGAAATAACCTAGCCAAAGAAAA | 60.363 | 37.037 | 0.00 | 0.00 | 31.53 | 2.29 |
3883 | 4046 | 7.604657 | TGGAAATAACCTAGCCAAAGAAAAA | 57.395 | 32.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3885 | 4048 | 7.289084 | TGGAAATAACCTAGCCAAAGAAAAACT | 59.711 | 33.333 | 0.00 | 0.00 | 0.00 | 2.66 |
3886 | 4049 | 7.598869 | GGAAATAACCTAGCCAAAGAAAAACTG | 59.401 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
3889 | 4052 | 2.029020 | CCTAGCCAAAGAAAAACTGCCC | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 5.36 |
3991 | 9900 | 6.407202 | TCCTAATTGGACTCTAAAAGCTGAC | 58.593 | 40.000 | 0.00 | 0.00 | 40.56 | 3.51 |
4052 | 9961 | 1.862201 | GTAACTAGCAACACACGCACA | 59.138 | 47.619 | 0.00 | 0.00 | 0.00 | 4.57 |
4065 | 9974 | 5.634896 | ACACACGCACATACTAGTACTAAC | 58.365 | 41.667 | 4.31 | 0.00 | 0.00 | 2.34 |
4099 | 10008 | 4.494484 | TGACATTAGATCACACGAACCTG | 58.506 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
4105 | 10014 | 7.068348 | ACATTAGATCACACGAACCTGTACTAT | 59.932 | 37.037 | 0.00 | 0.00 | 0.00 | 2.12 |
4106 | 10015 | 8.565416 | CATTAGATCACACGAACCTGTACTATA | 58.435 | 37.037 | 0.00 | 0.00 | 0.00 | 1.31 |
4116 | 10025 | 5.340439 | AACCTGTACTATACTGCTGAACC | 57.660 | 43.478 | 0.00 | 0.00 | 0.00 | 3.62 |
4117 | 10026 | 4.350245 | ACCTGTACTATACTGCTGAACCA | 58.650 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
4119 | 10028 | 5.105310 | ACCTGTACTATACTGCTGAACCAAG | 60.105 | 44.000 | 0.00 | 0.00 | 0.00 | 3.61 |
4135 | 10044 | 9.255304 | GCTGAACCAAGAAATAAAAATAACACA | 57.745 | 29.630 | 0.00 | 0.00 | 0.00 | 3.72 |
4157 | 10066 | 7.224753 | ACACAGTACTTGTATGTTGAAACTGAG | 59.775 | 37.037 | 6.18 | 1.24 | 38.16 | 3.35 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
9 | 10 | 9.520204 | CAAGAGAAACAAAGAAATAAGCAAAGA | 57.480 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
10 | 11 | 9.305925 | ACAAGAGAAACAAAGAAATAAGCAAAG | 57.694 | 29.630 | 0.00 | 0.00 | 0.00 | 2.77 |
11 | 12 | 9.651913 | AACAAGAGAAACAAAGAAATAAGCAAA | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 3.68 |
12 | 13 | 9.651913 | AAACAAGAGAAACAAAGAAATAAGCAA | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 3.91 |
13 | 14 | 9.651913 | AAAACAAGAGAAACAAAGAAATAAGCA | 57.348 | 25.926 | 0.00 | 0.00 | 0.00 | 3.91 |
19 | 20 | 9.410556 | CAGAGAAAAACAAGAGAAACAAAGAAA | 57.589 | 29.630 | 0.00 | 0.00 | 0.00 | 2.52 |
20 | 21 | 7.542130 | GCAGAGAAAAACAAGAGAAACAAAGAA | 59.458 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
21 | 22 | 7.029563 | GCAGAGAAAAACAAGAGAAACAAAGA | 58.970 | 34.615 | 0.00 | 0.00 | 0.00 | 2.52 |
22 | 23 | 6.254373 | GGCAGAGAAAAACAAGAGAAACAAAG | 59.746 | 38.462 | 0.00 | 0.00 | 0.00 | 2.77 |
23 | 24 | 6.071391 | AGGCAGAGAAAAACAAGAGAAACAAA | 60.071 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
24 | 25 | 5.418840 | AGGCAGAGAAAAACAAGAGAAACAA | 59.581 | 36.000 | 0.00 | 0.00 | 0.00 | 2.83 |
25 | 26 | 4.949856 | AGGCAGAGAAAAACAAGAGAAACA | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 2.83 |
26 | 27 | 5.506686 | AGGCAGAGAAAAACAAGAGAAAC | 57.493 | 39.130 | 0.00 | 0.00 | 0.00 | 2.78 |
27 | 28 | 6.530019 | AAAGGCAGAGAAAAACAAGAGAAA | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
28 | 29 | 6.530019 | AAAAGGCAGAGAAAAACAAGAGAA | 57.470 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
29 | 30 | 7.823745 | ATAAAAGGCAGAGAAAAACAAGAGA | 57.176 | 32.000 | 0.00 | 0.00 | 0.00 | 3.10 |
30 | 31 | 8.877808 | AAATAAAAGGCAGAGAAAAACAAGAG | 57.122 | 30.769 | 0.00 | 0.00 | 0.00 | 2.85 |
31 | 32 | 9.665719 | AAAAATAAAAGGCAGAGAAAAACAAGA | 57.334 | 25.926 | 0.00 | 0.00 | 0.00 | 3.02 |
32 | 33 | 9.706846 | CAAAAATAAAAGGCAGAGAAAAACAAG | 57.293 | 29.630 | 0.00 | 0.00 | 0.00 | 3.16 |
33 | 34 | 8.180920 | GCAAAAATAAAAGGCAGAGAAAAACAA | 58.819 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
34 | 35 | 7.552330 | AGCAAAAATAAAAGGCAGAGAAAAACA | 59.448 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
35 | 36 | 7.919690 | AGCAAAAATAAAAGGCAGAGAAAAAC | 58.080 | 30.769 | 0.00 | 0.00 | 0.00 | 2.43 |
36 | 37 | 9.606631 | TTAGCAAAAATAAAAGGCAGAGAAAAA | 57.393 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
37 | 38 | 9.777297 | ATTAGCAAAAATAAAAGGCAGAGAAAA | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.29 |
38 | 39 | 9.777297 | AATTAGCAAAAATAAAAGGCAGAGAAA | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 2.52 |
39 | 40 | 9.423061 | GAATTAGCAAAAATAAAAGGCAGAGAA | 57.577 | 29.630 | 0.00 | 0.00 | 0.00 | 2.87 |
40 | 41 | 8.806146 | AGAATTAGCAAAAATAAAAGGCAGAGA | 58.194 | 29.630 | 0.00 | 0.00 | 0.00 | 3.10 |
41 | 42 | 8.992835 | AGAATTAGCAAAAATAAAAGGCAGAG | 57.007 | 30.769 | 0.00 | 0.00 | 0.00 | 3.35 |
42 | 43 | 9.777297 | AAAGAATTAGCAAAAATAAAAGGCAGA | 57.223 | 25.926 | 0.00 | 0.00 | 0.00 | 4.26 |
55 | 56 | 9.307121 | TGAAAATCGACAAAAAGAATTAGCAAA | 57.693 | 25.926 | 0.00 | 0.00 | 0.00 | 3.68 |
56 | 57 | 8.864069 | TGAAAATCGACAAAAAGAATTAGCAA | 57.136 | 26.923 | 0.00 | 0.00 | 0.00 | 3.91 |
57 | 58 | 9.128107 | GATGAAAATCGACAAAAAGAATTAGCA | 57.872 | 29.630 | 0.00 | 0.00 | 0.00 | 3.49 |
58 | 59 | 8.587111 | GGATGAAAATCGACAAAAAGAATTAGC | 58.413 | 33.333 | 0.00 | 0.00 | 0.00 | 3.09 |
59 | 60 | 8.788813 | CGGATGAAAATCGACAAAAAGAATTAG | 58.211 | 33.333 | 0.00 | 0.00 | 0.00 | 1.73 |
60 | 61 | 8.293867 | ACGGATGAAAATCGACAAAAAGAATTA | 58.706 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
61 | 62 | 7.145323 | ACGGATGAAAATCGACAAAAAGAATT | 58.855 | 30.769 | 0.00 | 0.00 | 0.00 | 2.17 |
62 | 63 | 6.677913 | ACGGATGAAAATCGACAAAAAGAAT | 58.322 | 32.000 | 0.00 | 0.00 | 0.00 | 2.40 |
63 | 64 | 6.067263 | ACGGATGAAAATCGACAAAAAGAA | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 2.52 |
64 | 65 | 5.682943 | ACGGATGAAAATCGACAAAAAGA | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 2.52 |
65 | 66 | 6.747659 | AAACGGATGAAAATCGACAAAAAG | 57.252 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
66 | 67 | 6.975772 | AGAAAACGGATGAAAATCGACAAAAA | 59.024 | 30.769 | 0.00 | 0.00 | 0.00 | 1.94 |
67 | 68 | 6.500041 | AGAAAACGGATGAAAATCGACAAAA | 58.500 | 32.000 | 0.00 | 0.00 | 0.00 | 2.44 |
68 | 69 | 6.067263 | AGAAAACGGATGAAAATCGACAAA | 57.933 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
69 | 70 | 5.682943 | AGAAAACGGATGAAAATCGACAA | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
70 | 71 | 5.682943 | AAGAAAACGGATGAAAATCGACA | 57.317 | 34.783 | 0.00 | 0.00 | 0.00 | 4.35 |
71 | 72 | 6.986424 | AAAAGAAAACGGATGAAAATCGAC | 57.014 | 33.333 | 0.00 | 0.00 | 0.00 | 4.20 |
95 | 96 | 9.862371 | ACAATAAAGTTAACATGTGTTGAACAA | 57.138 | 25.926 | 8.61 | 0.00 | 43.61 | 2.83 |
214 | 215 | 7.924947 | TGTGTATGAAAATGCAGACATCAAAAA | 59.075 | 29.630 | 0.00 | 0.00 | 41.40 | 1.94 |
215 | 216 | 7.432059 | TGTGTATGAAAATGCAGACATCAAAA | 58.568 | 30.769 | 0.00 | 0.00 | 41.40 | 2.44 |
216 | 217 | 6.979465 | TGTGTATGAAAATGCAGACATCAAA | 58.021 | 32.000 | 0.00 | 0.00 | 41.40 | 2.69 |
217 | 218 | 6.572167 | TGTGTATGAAAATGCAGACATCAA | 57.428 | 33.333 | 0.00 | 0.00 | 41.40 | 2.57 |
218 | 219 | 6.762702 | ATGTGTATGAAAATGCAGACATCA | 57.237 | 33.333 | 0.00 | 0.00 | 41.40 | 3.07 |
219 | 220 | 7.008901 | CACAATGTGTATGAAAATGCAGACATC | 59.991 | 37.037 | 5.00 | 0.00 | 41.40 | 3.06 |
220 | 221 | 6.809689 | CACAATGTGTATGAAAATGCAGACAT | 59.190 | 34.615 | 5.00 | 0.00 | 41.40 | 3.06 |
221 | 222 | 6.151004 | CACAATGTGTATGAAAATGCAGACA | 58.849 | 36.000 | 5.00 | 0.00 | 37.63 | 3.41 |
222 | 223 | 5.061311 | GCACAATGTGTATGAAAATGCAGAC | 59.939 | 40.000 | 15.36 | 0.00 | 35.75 | 3.51 |
223 | 224 | 5.162794 | GCACAATGTGTATGAAAATGCAGA | 58.837 | 37.500 | 15.36 | 0.00 | 35.75 | 4.26 |
224 | 225 | 4.924462 | TGCACAATGTGTATGAAAATGCAG | 59.076 | 37.500 | 15.36 | 0.00 | 35.74 | 4.41 |
225 | 226 | 4.879598 | TGCACAATGTGTATGAAAATGCA | 58.120 | 34.783 | 15.36 | 0.00 | 38.17 | 3.96 |
226 | 227 | 6.411630 | AATGCACAATGTGTATGAAAATGC | 57.588 | 33.333 | 17.19 | 0.00 | 37.86 | 3.56 |
356 | 358 | 9.695526 | CTTGTATTCCAAAAATGTCAATCAAGA | 57.304 | 29.630 | 0.00 | 0.00 | 31.20 | 3.02 |
420 | 423 | 9.934190 | AAAGCATTTGAACATGTTAAATGTTTC | 57.066 | 25.926 | 28.99 | 21.58 | 41.27 | 2.78 |
676 | 682 | 9.253832 | TGTATGGAAAAAGTGGATCATGTATTT | 57.746 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
870 | 914 | 1.372087 | GAAGCGAGGCCCAAGATGTG | 61.372 | 60.000 | 0.00 | 0.00 | 0.00 | 3.21 |
871 | 915 | 1.078143 | GAAGCGAGGCCCAAGATGT | 60.078 | 57.895 | 0.00 | 0.00 | 0.00 | 3.06 |
886 | 930 | 3.130160 | GGCAAGCCTCGCCTGAAG | 61.130 | 66.667 | 3.29 | 0.00 | 46.56 | 3.02 |
907 | 951 | 1.134670 | GTTGTGGGCTTCTAGCGAGAT | 60.135 | 52.381 | 0.00 | 0.00 | 43.62 | 2.75 |
996 | 1055 | 0.619255 | TGGGCTTCCGGGTCATCTTA | 60.619 | 55.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1257 | 1316 | 3.041940 | GCGTCGGTGGTGTTCTGG | 61.042 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1337 | 1401 | 1.063327 | CGAGGACTCGCTGCTACAG | 59.937 | 63.158 | 8.93 | 0.00 | 46.50 | 2.74 |
1338 | 1402 | 3.188011 | CGAGGACTCGCTGCTACA | 58.812 | 61.111 | 8.93 | 0.00 | 46.50 | 2.74 |
1391 | 1455 | 1.002087 | GATACTGTTATGGGCGAGGGG | 59.998 | 57.143 | 0.00 | 0.00 | 0.00 | 4.79 |
1395 | 1459 | 4.955811 | ATGAAGATACTGTTATGGGCGA | 57.044 | 40.909 | 0.00 | 0.00 | 0.00 | 5.54 |
1521 | 1585 | 1.381327 | CTTCTCCCTCACGCCCCTA | 60.381 | 63.158 | 0.00 | 0.00 | 0.00 | 3.53 |
1632 | 1696 | 4.877251 | ACGAGAGAGATGTAGTAACTCACC | 59.123 | 45.833 | 0.00 | 0.00 | 33.69 | 4.02 |
1651 | 1715 | 3.548587 | CTCATTGCAGTGAAACAACGAG | 58.451 | 45.455 | 13.35 | 0.00 | 41.43 | 4.18 |
1654 | 1718 | 3.360249 | AGCTCATTGCAGTGAAACAAC | 57.640 | 42.857 | 13.35 | 1.30 | 45.94 | 3.32 |
1689 | 1758 | 4.836825 | CACTGAACTTCACATACCTCCAT | 58.163 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
1708 | 1777 | 7.094205 | CCTTCTTACTTTACCATGAATTGCACT | 60.094 | 37.037 | 0.00 | 0.00 | 0.00 | 4.40 |
1710 | 1779 | 6.350110 | GCCTTCTTACTTTACCATGAATTGCA | 60.350 | 38.462 | 0.00 | 0.00 | 0.00 | 4.08 |
1794 | 1923 | 9.273016 | CCGGTGATTAAGTACAGAATATCAAAT | 57.727 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1825 | 1954 | 6.952773 | TGTAGTGTTTTGTTCAAAGGCTAT | 57.047 | 33.333 | 0.00 | 0.00 | 0.00 | 2.97 |
1867 | 1996 | 7.417612 | ACATCATAACATGAAAGTTAATCCGC | 58.582 | 34.615 | 0.00 | 0.00 | 43.50 | 5.54 |
2079 | 2212 | 3.558931 | AACATGCATCTCCGACCATTA | 57.441 | 42.857 | 0.00 | 0.00 | 0.00 | 1.90 |
2322 | 2457 | 3.861113 | GCAACCATTGTGCTCAATATGTG | 59.139 | 43.478 | 13.31 | 11.73 | 41.66 | 3.21 |
2416 | 2552 | 7.033791 | CAGAATCATGATTTTGAGAACCTTGG | 58.966 | 38.462 | 26.93 | 2.97 | 35.60 | 3.61 |
2417 | 2553 | 7.823665 | TCAGAATCATGATTTTGAGAACCTTG | 58.176 | 34.615 | 28.61 | 12.13 | 37.11 | 3.61 |
2418 | 2554 | 8.413309 | TTCAGAATCATGATTTTGAGAACCTT | 57.587 | 30.769 | 29.71 | 5.76 | 41.14 | 3.50 |
2419 | 2555 | 8.591114 | ATTCAGAATCATGATTTTGAGAACCT | 57.409 | 30.769 | 29.71 | 15.67 | 41.14 | 3.50 |
2420 | 2556 | 7.642978 | CGATTCAGAATCATGATTTTGAGAACC | 59.357 | 37.037 | 29.71 | 21.36 | 41.14 | 3.62 |
2421 | 2557 | 7.642978 | CCGATTCAGAATCATGATTTTGAGAAC | 59.357 | 37.037 | 29.71 | 24.04 | 41.14 | 3.01 |
2422 | 2558 | 7.553760 | TCCGATTCAGAATCATGATTTTGAGAA | 59.446 | 33.333 | 29.71 | 24.02 | 41.14 | 2.87 |
2423 | 2559 | 7.049754 | TCCGATTCAGAATCATGATTTTGAGA | 58.950 | 34.615 | 29.71 | 23.42 | 41.14 | 3.27 |
2424 | 2560 | 7.255491 | TCCGATTCAGAATCATGATTTTGAG | 57.745 | 36.000 | 29.71 | 22.07 | 41.14 | 3.02 |
2425 | 2561 | 7.307573 | CGATCCGATTCAGAATCATGATTTTGA | 60.308 | 37.037 | 28.61 | 28.61 | 39.29 | 2.69 |
2426 | 2562 | 6.795593 | CGATCCGATTCAGAATCATGATTTTG | 59.204 | 38.462 | 25.69 | 25.69 | 37.78 | 2.44 |
2427 | 2563 | 6.072838 | CCGATCCGATTCAGAATCATGATTTT | 60.073 | 38.462 | 21.57 | 13.77 | 37.78 | 1.82 |
2428 | 2564 | 5.410746 | CCGATCCGATTCAGAATCATGATTT | 59.589 | 40.000 | 21.57 | 5.84 | 37.78 | 2.17 |
2429 | 2565 | 4.934001 | CCGATCCGATTCAGAATCATGATT | 59.066 | 41.667 | 20.85 | 20.85 | 37.78 | 2.57 |
2430 | 2566 | 4.221482 | TCCGATCCGATTCAGAATCATGAT | 59.779 | 41.667 | 20.87 | 19.61 | 37.78 | 2.45 |
2431 | 2567 | 3.573967 | TCCGATCCGATTCAGAATCATGA | 59.426 | 43.478 | 20.87 | 16.40 | 37.78 | 3.07 |
2432 | 2568 | 3.917988 | TCCGATCCGATTCAGAATCATG | 58.082 | 45.455 | 20.87 | 12.23 | 37.78 | 3.07 |
2433 | 2569 | 3.616076 | GCTCCGATCCGATTCAGAATCAT | 60.616 | 47.826 | 20.87 | 9.34 | 37.78 | 2.45 |
2434 | 2570 | 2.288457 | GCTCCGATCCGATTCAGAATCA | 60.288 | 50.000 | 20.87 | 4.98 | 37.78 | 2.57 |
2435 | 2571 | 2.029470 | AGCTCCGATCCGATTCAGAATC | 60.029 | 50.000 | 12.62 | 12.62 | 34.52 | 2.52 |
2436 | 2572 | 1.967066 | AGCTCCGATCCGATTCAGAAT | 59.033 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
2437 | 2573 | 1.338337 | GAGCTCCGATCCGATTCAGAA | 59.662 | 52.381 | 0.87 | 0.00 | 0.00 | 3.02 |
2438 | 2574 | 0.955178 | GAGCTCCGATCCGATTCAGA | 59.045 | 55.000 | 0.87 | 0.00 | 0.00 | 3.27 |
2439 | 2575 | 0.958091 | AGAGCTCCGATCCGATTCAG | 59.042 | 55.000 | 10.93 | 0.00 | 0.00 | 3.02 |
2440 | 2576 | 0.670706 | CAGAGCTCCGATCCGATTCA | 59.329 | 55.000 | 10.93 | 0.00 | 0.00 | 2.57 |
2441 | 2577 | 0.955178 | TCAGAGCTCCGATCCGATTC | 59.045 | 55.000 | 10.93 | 0.00 | 0.00 | 2.52 |
2442 | 2578 | 1.271934 | CATCAGAGCTCCGATCCGATT | 59.728 | 52.381 | 10.93 | 0.00 | 0.00 | 3.34 |
2443 | 2579 | 0.887247 | CATCAGAGCTCCGATCCGAT | 59.113 | 55.000 | 10.93 | 0.49 | 0.00 | 4.18 |
2444 | 2580 | 1.175347 | CCATCAGAGCTCCGATCCGA | 61.175 | 60.000 | 10.93 | 0.00 | 0.00 | 4.55 |
2445 | 2581 | 1.288439 | CCATCAGAGCTCCGATCCG | 59.712 | 63.158 | 10.93 | 0.05 | 0.00 | 4.18 |
2446 | 2582 | 1.543802 | CTACCATCAGAGCTCCGATCC | 59.456 | 57.143 | 10.93 | 0.00 | 0.00 | 3.36 |
2447 | 2583 | 1.543802 | CCTACCATCAGAGCTCCGATC | 59.456 | 57.143 | 10.93 | 0.00 | 0.00 | 3.69 |
2448 | 2584 | 1.145945 | TCCTACCATCAGAGCTCCGAT | 59.854 | 52.381 | 10.93 | 8.60 | 0.00 | 4.18 |
2449 | 2585 | 0.551396 | TCCTACCATCAGAGCTCCGA | 59.449 | 55.000 | 10.93 | 6.00 | 0.00 | 4.55 |
2450 | 2586 | 1.626686 | ATCCTACCATCAGAGCTCCG | 58.373 | 55.000 | 10.93 | 0.00 | 0.00 | 4.63 |
2451 | 2587 | 2.495669 | GCTATCCTACCATCAGAGCTCC | 59.504 | 54.545 | 10.93 | 0.00 | 0.00 | 4.70 |
2452 | 2588 | 3.161067 | TGCTATCCTACCATCAGAGCTC | 58.839 | 50.000 | 5.27 | 5.27 | 0.00 | 4.09 |
2453 | 2589 | 3.251016 | TGCTATCCTACCATCAGAGCT | 57.749 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
2454 | 2590 | 4.342862 | TTTGCTATCCTACCATCAGAGC | 57.657 | 45.455 | 0.00 | 0.00 | 0.00 | 4.09 |
2455 | 2591 | 6.294473 | ACAATTTGCTATCCTACCATCAGAG | 58.706 | 40.000 | 0.00 | 0.00 | 0.00 | 3.35 |
2456 | 2592 | 6.252599 | ACAATTTGCTATCCTACCATCAGA | 57.747 | 37.500 | 0.00 | 0.00 | 0.00 | 3.27 |
2457 | 2593 | 7.445121 | TCTACAATTTGCTATCCTACCATCAG | 58.555 | 38.462 | 0.00 | 0.00 | 0.00 | 2.90 |
2458 | 2594 | 7.373617 | TCTACAATTTGCTATCCTACCATCA | 57.626 | 36.000 | 0.00 | 0.00 | 0.00 | 3.07 |
2459 | 2595 | 8.854614 | ATTCTACAATTTGCTATCCTACCATC | 57.145 | 34.615 | 0.00 | 0.00 | 0.00 | 3.51 |
2460 | 2596 | 8.664079 | AGATTCTACAATTTGCTATCCTACCAT | 58.336 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2461 | 2597 | 8.034313 | AGATTCTACAATTTGCTATCCTACCA | 57.966 | 34.615 | 0.00 | 0.00 | 0.00 | 3.25 |
2462 | 2598 | 8.910351 | AAGATTCTACAATTTGCTATCCTACC | 57.090 | 34.615 | 0.00 | 0.00 | 0.00 | 3.18 |
2476 | 2612 | 9.132923 | ACGATCCTGATAGTTAAGATTCTACAA | 57.867 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
2477 | 2613 | 8.693120 | ACGATCCTGATAGTTAAGATTCTACA | 57.307 | 34.615 | 0.00 | 0.00 | 0.00 | 2.74 |
2480 | 2616 | 9.575868 | TTCTACGATCCTGATAGTTAAGATTCT | 57.424 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2482 | 2618 | 9.968870 | GTTTCTACGATCCTGATAGTTAAGATT | 57.031 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2483 | 2619 | 9.357161 | AGTTTCTACGATCCTGATAGTTAAGAT | 57.643 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2484 | 2620 | 8.749026 | AGTTTCTACGATCCTGATAGTTAAGA | 57.251 | 34.615 | 0.00 | 0.00 | 0.00 | 2.10 |
2487 | 2623 | 9.842775 | TCTAAGTTTCTACGATCCTGATAGTTA | 57.157 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
2488 | 2624 | 8.749026 | TCTAAGTTTCTACGATCCTGATAGTT | 57.251 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
2489 | 2625 | 8.927675 | ATCTAAGTTTCTACGATCCTGATAGT | 57.072 | 34.615 | 0.00 | 0.00 | 0.00 | 2.12 |
2490 | 2626 | 9.834628 | GAATCTAAGTTTCTACGATCCTGATAG | 57.165 | 37.037 | 0.00 | 0.00 | 0.00 | 2.08 |
2491 | 2627 | 9.575868 | AGAATCTAAGTTTCTACGATCCTGATA | 57.424 | 33.333 | 0.00 | 0.00 | 31.75 | 2.15 |
2492 | 2628 | 8.472007 | AGAATCTAAGTTTCTACGATCCTGAT | 57.528 | 34.615 | 0.00 | 0.00 | 31.75 | 2.90 |
2493 | 2629 | 7.883391 | AGAATCTAAGTTTCTACGATCCTGA | 57.117 | 36.000 | 0.00 | 0.00 | 31.75 | 3.86 |
2494 | 2630 | 9.619316 | CATAGAATCTAAGTTTCTACGATCCTG | 57.381 | 37.037 | 0.00 | 0.00 | 38.23 | 3.86 |
2495 | 2631 | 9.575868 | TCATAGAATCTAAGTTTCTACGATCCT | 57.424 | 33.333 | 0.00 | 0.00 | 38.23 | 3.24 |
2498 | 2634 | 9.968870 | GGTTCATAGAATCTAAGTTTCTACGAT | 57.031 | 33.333 | 0.00 | 0.00 | 38.23 | 3.73 |
2499 | 2635 | 8.963725 | TGGTTCATAGAATCTAAGTTTCTACGA | 58.036 | 33.333 | 0.00 | 0.00 | 38.23 | 3.43 |
2500 | 2636 | 9.239002 | CTGGTTCATAGAATCTAAGTTTCTACG | 57.761 | 37.037 | 0.00 | 0.00 | 38.23 | 3.51 |
2513 | 2649 | 7.810282 | CGATTCTACGATTCTGGTTCATAGAAT | 59.190 | 37.037 | 2.68 | 2.68 | 45.05 | 2.40 |
2514 | 2650 | 7.012989 | TCGATTCTACGATTCTGGTTCATAGAA | 59.987 | 37.037 | 0.00 | 0.00 | 38.42 | 2.10 |
2515 | 2651 | 6.485648 | TCGATTCTACGATTCTGGTTCATAGA | 59.514 | 38.462 | 0.00 | 0.00 | 37.37 | 1.98 |
2516 | 2652 | 6.669278 | TCGATTCTACGATTCTGGTTCATAG | 58.331 | 40.000 | 0.00 | 0.00 | 37.37 | 2.23 |
2517 | 2653 | 6.628919 | TCGATTCTACGATTCTGGTTCATA | 57.371 | 37.500 | 0.00 | 0.00 | 37.37 | 2.15 |
2518 | 2654 | 5.515797 | TCGATTCTACGATTCTGGTTCAT | 57.484 | 39.130 | 0.00 | 0.00 | 37.37 | 2.57 |
2519 | 2655 | 4.976224 | TCGATTCTACGATTCTGGTTCA | 57.024 | 40.909 | 0.00 | 0.00 | 37.37 | 3.18 |
2520 | 2656 | 4.740695 | CCTTCGATTCTACGATTCTGGTTC | 59.259 | 45.833 | 0.00 | 0.00 | 41.82 | 3.62 |
2521 | 2657 | 4.441634 | CCCTTCGATTCTACGATTCTGGTT | 60.442 | 45.833 | 0.00 | 0.00 | 41.82 | 3.67 |
2522 | 2658 | 3.068307 | CCCTTCGATTCTACGATTCTGGT | 59.932 | 47.826 | 0.00 | 0.00 | 41.82 | 4.00 |
2523 | 2659 | 3.068307 | ACCCTTCGATTCTACGATTCTGG | 59.932 | 47.826 | 0.00 | 0.00 | 41.82 | 3.86 |
2524 | 2660 | 4.308899 | ACCCTTCGATTCTACGATTCTG | 57.691 | 45.455 | 0.00 | 0.00 | 41.82 | 3.02 |
2525 | 2661 | 5.340439 | AAACCCTTCGATTCTACGATTCT | 57.660 | 39.130 | 0.00 | 0.00 | 41.82 | 2.40 |
2526 | 2662 | 6.271566 | ACTAAACCCTTCGATTCTACGATTC | 58.728 | 40.000 | 0.00 | 0.00 | 41.82 | 2.52 |
2527 | 2663 | 6.218108 | ACTAAACCCTTCGATTCTACGATT | 57.782 | 37.500 | 0.00 | 0.00 | 41.82 | 3.34 |
2528 | 2664 | 5.848833 | ACTAAACCCTTCGATTCTACGAT | 57.151 | 39.130 | 0.00 | 0.00 | 41.82 | 3.73 |
2529 | 2665 | 5.649782 | AACTAAACCCTTCGATTCTACGA | 57.350 | 39.130 | 0.00 | 0.00 | 40.55 | 3.43 |
2530 | 2666 | 5.063060 | CCAAACTAAACCCTTCGATTCTACG | 59.937 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2531 | 2667 | 6.168389 | TCCAAACTAAACCCTTCGATTCTAC | 58.832 | 40.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2532 | 2668 | 6.363167 | TCCAAACTAAACCCTTCGATTCTA | 57.637 | 37.500 | 0.00 | 0.00 | 0.00 | 2.10 |
2533 | 2669 | 5.237236 | TCCAAACTAAACCCTTCGATTCT | 57.763 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2534 | 2670 | 5.220605 | CGATCCAAACTAAACCCTTCGATTC | 60.221 | 44.000 | 0.00 | 0.00 | 0.00 | 2.52 |
2535 | 2671 | 4.634443 | CGATCCAAACTAAACCCTTCGATT | 59.366 | 41.667 | 0.00 | 0.00 | 0.00 | 3.34 |
2536 | 2672 | 4.189231 | CGATCCAAACTAAACCCTTCGAT | 58.811 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
2537 | 2673 | 3.007182 | ACGATCCAAACTAAACCCTTCGA | 59.993 | 43.478 | 0.00 | 0.00 | 0.00 | 3.71 |
2538 | 2674 | 3.332034 | ACGATCCAAACTAAACCCTTCG | 58.668 | 45.455 | 0.00 | 0.00 | 0.00 | 3.79 |
2539 | 2675 | 6.429078 | ACTTTACGATCCAAACTAAACCCTTC | 59.571 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
2540 | 2676 | 6.301486 | ACTTTACGATCCAAACTAAACCCTT | 58.699 | 36.000 | 0.00 | 0.00 | 0.00 | 3.95 |
2541 | 2677 | 5.872963 | ACTTTACGATCCAAACTAAACCCT | 58.127 | 37.500 | 0.00 | 0.00 | 0.00 | 4.34 |
2542 | 2678 | 5.163923 | CGACTTTACGATCCAAACTAAACCC | 60.164 | 44.000 | 0.00 | 0.00 | 35.09 | 4.11 |
2543 | 2679 | 5.406477 | ACGACTTTACGATCCAAACTAAACC | 59.594 | 40.000 | 0.00 | 0.00 | 37.03 | 3.27 |
2544 | 2680 | 6.457851 | ACGACTTTACGATCCAAACTAAAC | 57.542 | 37.500 | 0.00 | 0.00 | 37.03 | 2.01 |
2545 | 2681 | 7.592938 | TCTACGACTTTACGATCCAAACTAAA | 58.407 | 34.615 | 0.00 | 0.00 | 37.03 | 1.85 |
2546 | 2682 | 7.144722 | TCTACGACTTTACGATCCAAACTAA | 57.855 | 36.000 | 0.00 | 0.00 | 37.03 | 2.24 |
2547 | 2683 | 6.741992 | TCTACGACTTTACGATCCAAACTA | 57.258 | 37.500 | 0.00 | 0.00 | 37.03 | 2.24 |
2548 | 2684 | 5.633830 | TCTACGACTTTACGATCCAAACT | 57.366 | 39.130 | 0.00 | 0.00 | 37.03 | 2.66 |
2549 | 2685 | 6.290956 | CGATTCTACGACTTTACGATCCAAAC | 60.291 | 42.308 | 0.00 | 0.00 | 37.03 | 2.93 |
2550 | 2686 | 5.740569 | CGATTCTACGACTTTACGATCCAAA | 59.259 | 40.000 | 0.00 | 0.00 | 37.03 | 3.28 |
2551 | 2687 | 5.163723 | ACGATTCTACGACTTTACGATCCAA | 60.164 | 40.000 | 0.00 | 0.00 | 37.03 | 3.53 |
2552 | 2688 | 4.333649 | ACGATTCTACGACTTTACGATCCA | 59.666 | 41.667 | 0.00 | 0.00 | 37.03 | 3.41 |
2553 | 2689 | 4.842029 | ACGATTCTACGACTTTACGATCC | 58.158 | 43.478 | 0.00 | 0.00 | 37.03 | 3.36 |
2554 | 2690 | 9.035338 | GTTATACGATTCTACGACTTTACGATC | 57.965 | 37.037 | 0.00 | 0.00 | 37.03 | 3.69 |
2555 | 2691 | 8.551205 | TGTTATACGATTCTACGACTTTACGAT | 58.449 | 33.333 | 0.00 | 0.00 | 37.03 | 3.73 |
2556 | 2692 | 7.905126 | TGTTATACGATTCTACGACTTTACGA | 58.095 | 34.615 | 0.00 | 0.00 | 37.03 | 3.43 |
2557 | 2693 | 8.058328 | TCTGTTATACGATTCTACGACTTTACG | 58.942 | 37.037 | 0.00 | 0.00 | 37.03 | 3.18 |
2558 | 2694 | 9.708222 | TTCTGTTATACGATTCTACGACTTTAC | 57.292 | 33.333 | 0.00 | 0.00 | 37.03 | 2.01 |
2560 | 2696 | 9.448294 | GATTCTGTTATACGATTCTACGACTTT | 57.552 | 33.333 | 0.00 | 0.00 | 37.03 | 2.66 |
2561 | 2697 | 7.797587 | CGATTCTGTTATACGATTCTACGACTT | 59.202 | 37.037 | 0.00 | 0.00 | 37.03 | 3.01 |
2562 | 2698 | 7.042187 | ACGATTCTGTTATACGATTCTACGACT | 60.042 | 37.037 | 0.00 | 0.00 | 37.03 | 4.18 |
2563 | 2699 | 7.058128 | CACGATTCTGTTATACGATTCTACGAC | 59.942 | 40.741 | 0.00 | 0.00 | 37.03 | 4.34 |
2564 | 2700 | 7.042523 | TCACGATTCTGTTATACGATTCTACGA | 60.043 | 37.037 | 0.00 | 0.00 | 37.03 | 3.43 |
2565 | 2701 | 7.067728 | TCACGATTCTGTTATACGATTCTACG | 58.932 | 38.462 | 0.00 | 0.00 | 39.31 | 3.51 |
2566 | 2702 | 8.951954 | ATCACGATTCTGTTATACGATTCTAC | 57.048 | 34.615 | 0.00 | 0.00 | 0.00 | 2.59 |
2567 | 2703 | 9.608617 | GAATCACGATTCTGTTATACGATTCTA | 57.391 | 33.333 | 11.68 | 0.00 | 42.85 | 2.10 |
2568 | 2704 | 8.508800 | GAATCACGATTCTGTTATACGATTCT | 57.491 | 34.615 | 11.68 | 0.00 | 42.85 | 2.40 |
2581 | 2717 | 5.337894 | ACAAGGATGTCAGAATCACGATTCT | 60.338 | 40.000 | 15.08 | 15.08 | 44.04 | 2.40 |
2582 | 2718 | 4.872691 | ACAAGGATGTCAGAATCACGATTC | 59.127 | 41.667 | 11.11 | 11.11 | 40.60 | 2.52 |
2583 | 2719 | 4.836825 | ACAAGGATGTCAGAATCACGATT | 58.163 | 39.130 | 0.00 | 0.00 | 33.41 | 3.34 |
2584 | 2720 | 4.478206 | ACAAGGATGTCAGAATCACGAT | 57.522 | 40.909 | 0.00 | 0.00 | 33.41 | 3.73 |
2585 | 2721 | 3.961480 | ACAAGGATGTCAGAATCACGA | 57.039 | 42.857 | 0.00 | 0.00 | 33.41 | 4.35 |
2586 | 2722 | 3.996363 | TGAACAAGGATGTCAGAATCACG | 59.004 | 43.478 | 0.00 | 0.00 | 39.40 | 4.35 |
2587 | 2723 | 5.240891 | TCTGAACAAGGATGTCAGAATCAC | 58.759 | 41.667 | 0.24 | 0.00 | 39.40 | 3.06 |
2588 | 2724 | 5.488262 | TCTGAACAAGGATGTCAGAATCA | 57.512 | 39.130 | 0.24 | 0.00 | 39.40 | 2.57 |
2589 | 2725 | 5.702670 | TGTTCTGAACAAGGATGTCAGAATC | 59.297 | 40.000 | 20.14 | 11.22 | 45.05 | 2.52 |
2590 | 2726 | 5.624159 | TGTTCTGAACAAGGATGTCAGAAT | 58.376 | 37.500 | 20.14 | 0.00 | 45.05 | 2.40 |
2591 | 2727 | 5.034852 | TGTTCTGAACAAGGATGTCAGAA | 57.965 | 39.130 | 20.14 | 10.46 | 43.44 | 3.02 |
2592 | 2728 | 4.687901 | TGTTCTGAACAAGGATGTCAGA | 57.312 | 40.909 | 20.14 | 0.00 | 39.40 | 3.27 |
2698 | 2834 | 7.277098 | CAGCCTCACATTATCCAAAAATCAAAG | 59.723 | 37.037 | 0.00 | 0.00 | 0.00 | 2.77 |
2774 | 2911 | 1.538047 | GACACATGCCACCTGTCATT | 58.462 | 50.000 | 8.17 | 0.00 | 35.39 | 2.57 |
3080 | 3218 | 5.643348 | TCGACTCCTAACTTTATCGTACACA | 59.357 | 40.000 | 0.00 | 0.00 | 0.00 | 3.72 |
3103 | 3241 | 3.084786 | CCTTGACATCCTTGGGTTTCTC | 58.915 | 50.000 | 0.00 | 0.00 | 0.00 | 2.87 |
3401 | 3542 | 2.338577 | ATCCAGGATTTGCTTCCTCG | 57.661 | 50.000 | 0.00 | 0.00 | 44.54 | 4.63 |
3465 | 3606 | 0.036010 | TAGCTTGCCTGAGTTCCTGC | 60.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
3538 | 3698 | 9.432982 | ACTCTTCTATCTTTGAAGGATGAGTAT | 57.567 | 33.333 | 6.32 | 0.00 | 40.73 | 2.12 |
3545 | 3705 | 6.724441 | TGTACCACTCTTCTATCTTTGAAGGA | 59.276 | 38.462 | 0.00 | 0.00 | 40.73 | 3.36 |
3548 | 3708 | 9.871238 | GTATTGTACCACTCTTCTATCTTTGAA | 57.129 | 33.333 | 0.00 | 0.00 | 0.00 | 2.69 |
3578 | 3738 | 0.038983 | TTCTTTCGACGGTCGCATCA | 60.039 | 50.000 | 24.76 | 5.59 | 40.21 | 3.07 |
3579 | 3739 | 1.065358 | TTTCTTTCGACGGTCGCATC | 58.935 | 50.000 | 24.76 | 0.00 | 40.21 | 3.91 |
3590 | 3750 | 1.004292 | AGCACCGTCGTTTTTCTTTCG | 60.004 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
3593 | 3753 | 5.467735 | AGTTATTAGCACCGTCGTTTTTCTT | 59.532 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3601 | 3761 | 2.606272 | GGGAAAGTTATTAGCACCGTCG | 59.394 | 50.000 | 0.00 | 0.00 | 0.00 | 5.12 |
3604 | 3764 | 4.881850 | AGATTGGGAAAGTTATTAGCACCG | 59.118 | 41.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3607 | 3767 | 7.361713 | CGTGAAAGATTGGGAAAGTTATTAGCA | 60.362 | 37.037 | 0.00 | 0.00 | 0.00 | 3.49 |
3610 | 3770 | 6.943718 | ACCGTGAAAGATTGGGAAAGTTATTA | 59.056 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
3616 | 3776 | 4.069304 | TGTACCGTGAAAGATTGGGAAAG | 58.931 | 43.478 | 0.00 | 0.00 | 0.00 | 2.62 |
3619 | 3779 | 2.635915 | ACTGTACCGTGAAAGATTGGGA | 59.364 | 45.455 | 0.00 | 0.00 | 0.00 | 4.37 |
3653 | 3813 | 0.179134 | AAGATCGTGAGCGCTACACC | 60.179 | 55.000 | 24.53 | 15.54 | 38.14 | 4.16 |
3655 | 3815 | 0.526211 | ACAAGATCGTGAGCGCTACA | 59.474 | 50.000 | 11.50 | 7.79 | 38.14 | 2.74 |
3658 | 3818 | 1.095600 | TCTACAAGATCGTGAGCGCT | 58.904 | 50.000 | 11.27 | 11.27 | 38.14 | 5.92 |
3665 | 3825 | 2.797156 | GCGATTGCATCTACAAGATCGT | 59.203 | 45.455 | 13.00 | 0.00 | 42.15 | 3.73 |
3685 | 3845 | 0.368567 | GTGCGTGTTGTTTTTGTGGC | 59.631 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
3690 | 3850 | 0.456995 | CGGGTGTGCGTGTTGTTTTT | 60.457 | 50.000 | 0.00 | 0.00 | 0.00 | 1.94 |
3715 | 3875 | 2.095532 | CGAAGATCGTCCACGTACTTCT | 59.904 | 50.000 | 23.51 | 11.77 | 42.90 | 2.85 |
3723 | 3883 | 0.103208 | ATCTGCCGAAGATCGTCCAC | 59.897 | 55.000 | 2.90 | 0.00 | 42.27 | 4.02 |
3736 | 3896 | 2.105006 | TCAGTTTCTGCTGATCTGCC | 57.895 | 50.000 | 20.39 | 5.98 | 40.23 | 4.85 |
3752 | 3912 | 7.706179 | GGTCAGAGATTGATTCTAGAGTTTCAG | 59.294 | 40.741 | 0.00 | 0.00 | 38.29 | 3.02 |
3774 | 3934 | 3.295093 | TGAGGCTTTGTGATTTTGGTCA | 58.705 | 40.909 | 0.00 | 0.00 | 0.00 | 4.02 |
3837 | 3997 | 2.029918 | TCGATGGATAGATCGGCAACTG | 60.030 | 50.000 | 0.00 | 0.00 | 44.41 | 3.16 |
3878 | 4041 | 0.236449 | CGTGTACGGGGCAGTTTTTC | 59.764 | 55.000 | 0.00 | 0.00 | 35.37 | 2.29 |
3899 | 4062 | 4.258702 | CACTATATATAGGGCCATCGGC | 57.741 | 50.000 | 21.20 | 0.00 | 39.71 | 5.54 |
3974 | 9883 | 1.275291 | CCGGTCAGCTTTTAGAGTCCA | 59.725 | 52.381 | 0.00 | 0.00 | 0.00 | 4.02 |
4014 | 9923 | 8.395633 | GCTAGTTACAAAAGTCAAAGTCTGAAA | 58.604 | 33.333 | 0.00 | 0.00 | 35.22 | 2.69 |
4039 | 9948 | 2.066262 | ACTAGTATGTGCGTGTGTTGC | 58.934 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
4065 | 9974 | 9.208022 | TGTGATCTAATGTCAAGTGTCTTTTAG | 57.792 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
4088 | 9997 | 4.103357 | GCAGTATAGTACAGGTTCGTGTG | 58.897 | 47.826 | 8.16 | 0.00 | 31.46 | 3.82 |
4099 | 10008 | 9.595823 | TTATTTCTTGGTTCAGCAGTATAGTAC | 57.404 | 33.333 | 0.00 | 0.00 | 0.00 | 2.73 |
4106 | 10015 | 9.476202 | GTTATTTTTATTTCTTGGTTCAGCAGT | 57.524 | 29.630 | 0.00 | 0.00 | 0.00 | 4.40 |
4130 | 10039 | 7.551262 | TCAGTTTCAACATACAAGTACTGTGTT | 59.449 | 33.333 | 13.48 | 11.29 | 39.20 | 3.32 |
4135 | 10044 | 6.525629 | AGCTCAGTTTCAACATACAAGTACT | 58.474 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
4138 | 10047 | 5.368145 | TGAGCTCAGTTTCAACATACAAGT | 58.632 | 37.500 | 13.74 | 0.00 | 0.00 | 3.16 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.