AutoCloner

Multiple sequence alignment - TraesCS7A01G194700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G194700	chr7A	100.000	3529	0	0	1	3529	154061706	154065234	0.000000e+00	6517.0
1	TraesCS7A01G194700	chr7A	81.474	1873	307	30	583	2428	146024885	146026744	0.000000e+00	1500.0
2	TraesCS7A01G194700	chr7A	95.687	626	24	2	2907	3529	546465395	546464770	0.000000e+00	1003.0
3	TraesCS7A01G194700	chr7A	95.506	623	28	0	2907	3529	677360175	677359553	0.000000e+00	996.0
4	TraesCS7A01G194700	chr7A	78.081	1355	259	31	724	2062	105778670	105777338	0.000000e+00	822.0
5	TraesCS7A01G194700	chr7A	79.762	336	53	8	2455	2779	146026824	146027155	2.740000e-56	230.0
6	TraesCS7A01G194700	chr7D	94.321	1849	100	5	583	2428	152947035	152948881	0.000000e+00	2828.0
7	TraesCS7A01G194700	chr7D	78.412	1348	261	25	724	2062	101799430	101798104	0.000000e+00	850.0
8	TraesCS7A01G194700	chr7D	91.987	599	36	5	2	595	152946406	152946997	0.000000e+00	830.0
9	TraesCS7A01G194700	chr7D	91.358	486	32	5	2425	2906	152948931	152949410	0.000000e+00	656.0
10	TraesCS7A01G194700	chr7B	93.990	1847	99	4	583	2428	114938611	114940446	0.000000e+00	2785.0
11	TraesCS7A01G194700	chr7B	92.244	606	35	3	1	595	114937969	114938573	0.000000e+00	848.0
12	TraesCS7A01G194700	chr7B	78.132	1349	263	27	724	2062	59180886	59179560	0.000000e+00	828.0
13	TraesCS7A01G194700	chr7B	90.289	484	40	4	2425	2906	114940496	114940974	8.320000e-176	627.0
14	TraesCS7A01G194700	chr7B	78.862	369	58	10	2433	2783	107823395	107823761	7.620000e-57	231.0
15	TraesCS7A01G194700	chr5A	80.431	1855	325	34	597	2428	706406990	706405151	0.000000e+00	1380.0
16	TraesCS7A01G194700	chr5A	95.367	626	28	1	2903	3527	654213392	654214017	0.000000e+00	994.0
17	TraesCS7A01G194700	chr5A	84.545	110	10	3	2783	2891	267113957	267113854	6.230000e-18	102.0
18	TraesCS7A01G194700	chr2A	96.474	624	21	1	2907	3529	697219149	697218526	0.000000e+00	1029.0
19	TraesCS7A01G194700	chr4A	95.411	632	25	4	2901	3529	521404254	521403624	0.000000e+00	1003.0
20	TraesCS7A01G194700	chr4A	95.253	632	28	2	2899	3529	46811034	46810404	0.000000e+00	1000.0
21	TraesCS7A01G194700	chr4A	95.520	625	25	2	2907	3528	37665681	37666305	0.000000e+00	996.0
22	TraesCS7A01G194700	chr3A	95.520	625	27	1	2906	3529	535603338	535602714	0.000000e+00	998.0
23	TraesCS7A01G194700	chr3A	89.524	105	6	1	2783	2887	221306220	221306121	1.030000e-25	128.0
24	TraesCS7A01G194700	chr3A	83.036	112	14	2	2783	2894	648733426	648733532	2.900000e-16	97.1
25	TraesCS7A01G194700	chr1A	95.246	631	26	3	2902	3529	457923425	457924054	0.000000e+00	996.0
26	TraesCS7A01G194700	chr3D	78.365	1382	271	20	727	2100	39121059	39119698	0.000000e+00	870.0
27	TraesCS7A01G194700	chrUn	79.399	1199	221	20	817	2005	29889726	29888544	0.000000e+00	822.0
28	TraesCS7A01G194700	chr4B	79.603	1108	207	18	908	2005	667817385	667818483	0.000000e+00	776.0
29	TraesCS7A01G194700	chr2D	83.871	124	13	5	2784	2906	433838597	433838480	1.040000e-20	111.0
30	TraesCS7A01G194700	chr2B	83.740	123	14	4	2784	2906	646804279	646804163	1.040000e-20	111.0
31	TraesCS7A01G194700	chr5B	83.200	125	16	1	2783	2907	276263881	276263762	3.720000e-20	110.0
32	TraesCS7A01G194700	chr1B	83.200	125	14	4	2783	2907	388379456	388379339	1.340000e-19	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G194700	chr7A	154061706	154065234	3528	False	6517	6517	100.000000	1	3529	1	chr7A.!!$F1	3528
1	TraesCS7A01G194700	chr7A	546464770	546465395	625	True	1003	1003	95.687000	2907	3529	1	chr7A.!!$R2	622
2	TraesCS7A01G194700	chr7A	677359553	677360175	622	True	996	996	95.506000	2907	3529	1	chr7A.!!$R3	622
3	TraesCS7A01G194700	chr7A	146024885	146027155	2270	False	865	1500	80.618000	583	2779	2	chr7A.!!$F2	2196
4	TraesCS7A01G194700	chr7A	105777338	105778670	1332	True	822	822	78.081000	724	2062	1	chr7A.!!$R1	1338
5	TraesCS7A01G194700	chr7D	152946406	152949410	3004	False	1438	2828	92.555333	2	2906	3	chr7D.!!$F1	2904
6	TraesCS7A01G194700	chr7D	101798104	101799430	1326	True	850	850	78.412000	724	2062	1	chr7D.!!$R1	1338
7	TraesCS7A01G194700	chr7B	114937969	114940974	3005	False	1420	2785	92.174333	1	2906	3	chr7B.!!$F2	2905
8	TraesCS7A01G194700	chr7B	59179560	59180886	1326	True	828	828	78.132000	724	2062	1	chr7B.!!$R1	1338
9	TraesCS7A01G194700	chr5A	706405151	706406990	1839	True	1380	1380	80.431000	597	2428	1	chr5A.!!$R2	1831
10	TraesCS7A01G194700	chr5A	654213392	654214017	625	False	994	994	95.367000	2903	3527	1	chr5A.!!$F1	624
11	TraesCS7A01G194700	chr2A	697218526	697219149	623	True	1029	1029	96.474000	2907	3529	1	chr2A.!!$R1	622
12	TraesCS7A01G194700	chr4A	521403624	521404254	630	True	1003	1003	95.411000	2901	3529	1	chr4A.!!$R2	628
13	TraesCS7A01G194700	chr4A	46810404	46811034	630	True	1000	1000	95.253000	2899	3529	1	chr4A.!!$R1	630
14	TraesCS7A01G194700	chr4A	37665681	37666305	624	False	996	996	95.520000	2907	3528	1	chr4A.!!$F1	621
15	TraesCS7A01G194700	chr3A	535602714	535603338	624	True	998	998	95.520000	2906	3529	1	chr3A.!!$R2	623
16	TraesCS7A01G194700	chr1A	457923425	457924054	629	False	996	996	95.246000	2902	3529	1	chr1A.!!$F1	627
17	TraesCS7A01G194700	chr3D	39119698	39121059	1361	True	870	870	78.365000	727	2100	1	chr3D.!!$R1	1373
18	TraesCS7A01G194700	chrUn	29888544	29889726	1182	True	822	822	79.399000	817	2005	1	chrUn.!!$R1	1188
19	TraesCS7A01G194700	chr4B	667817385	667818483	1098	False	776	776	79.603000	908	2005	1	chr4B.!!$F1	1097

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
959	1053	0.462937	AAAAGCCCCAAAACGCCAAC	60.463	50.000	0.0	0.0	0.0	3.77	F
1096	1190	1.754226	CCCCCAATATTTGTTCCACCG	59.246	52.381	0.0	0.0	0.0	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1901	2004	0.468226	GTGGGGCTAATGACGATGGA	59.532	55.0	0.0	0.0	0.0	3.41	R
2941	3120	0.541063	TGGCTCCACGACTAAGTCCA	60.541	55.0	0.0	0.0	0.0	4.02	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
103	104	1.691196	CTTGTGAAAGGAAGGTGGCA	58.309	50.000	0.00	0.00	0.00	4.92
143	144	1.946768	GCCCGCAAGATAAGCACATAA	59.053	47.619	0.00	0.00	43.02	1.90
147	148	3.565482	CCGCAAGATAAGCACATAACCAT	59.435	43.478	0.00	0.00	43.02	3.55
191	192	1.372582	ACATGTATCTTGTGCCAGCG	58.627	50.000	0.00	0.00	0.00	5.18
261	262	3.192844	CCTACACCAATACACGACACTCT	59.807	47.826	0.00	0.00	0.00	3.24
266	267	3.260884	ACCAATACACGACACTCTGGAAT	59.739	43.478	0.00	0.00	0.00	3.01
343	344	4.388773	CGTCTTTGTACATACATGTGTGCT	59.611	41.667	21.13	11.57	41.89	4.40
350	351	1.752498	CATACATGTGTGCTTGCCCAT	59.248	47.619	9.82	0.00	0.00	4.00
368	369	5.070001	GCCCATAGAGTGCAAATTATACCA	58.930	41.667	0.00	0.00	0.00	3.25
401	402	2.632377	CATGCGGGAATTCAGTAGTGT	58.368	47.619	7.93	0.00	0.00	3.55
452	453	7.982919	GGTAACTAATCCAAAGGTGTTGTTTTT	59.017	33.333	0.00	0.00	0.00	1.94
501	513	6.014584	TGTGATTGTTACTGACACTCATAGGT	60.015	38.462	0.00	0.00	45.82	3.08
507	519	2.753452	ACTGACACTCATAGGTACCACG	59.247	50.000	15.94	1.42	0.00	4.94
524	536	5.617528	ACCACGTTGTACCCATCATATTA	57.382	39.130	0.00	0.00	0.00	0.98
525	537	6.182507	ACCACGTTGTACCCATCATATTAT	57.817	37.500	0.00	0.00	0.00	1.28
612	675	8.877864	AACCAACATATTTCACCTCAAATCTA	57.122	30.769	0.00	0.00	0.00	1.98
787	860	2.777094	TCAATCTGGCATGACGTTTCA	58.223	42.857	0.00	0.00	35.73	2.69
828	902	1.192146	GCACCTGTCACCACTAGGGA	61.192	60.000	0.00	0.00	41.15	4.20
959	1053	0.462937	AAAAGCCCCAAAACGCCAAC	60.463	50.000	0.00	0.00	0.00	3.77
1096	1190	1.754226	CCCCCAATATTTGTTCCACCG	59.246	52.381	0.00	0.00	0.00	4.94
1310	1405	3.147595	CGAGCCGTGGGATCTCCA	61.148	66.667	0.00	0.00	44.79	3.86
1663	1759	7.633193	AACCTTGACTAGTAGTACTCATGAG	57.367	40.000	21.37	21.37	0.00	2.90
1665	1761	7.176490	ACCTTGACTAGTAGTACTCATGAGTT	58.824	38.462	32.14	18.44	42.54	3.01
1754	1850	5.244178	CCTATGTTGGTAGGAGGAGTATGTC	59.756	48.000	0.00	0.00	43.27	3.06
1755	1851	4.055710	TGTTGGTAGGAGGAGTATGTCA	57.944	45.455	0.00	0.00	0.00	3.58
1789	1885	2.762887	TCCATAAGAGCACTGGACTGAG	59.237	50.000	0.00	0.00	34.17	3.35
1901	2004	4.040217	GCTCCTCTCATGGACTATGATGTT	59.960	45.833	1.53	0.00	44.48	2.71
1916	2019	3.466836	TGATGTTCCATCGTCATTAGCC	58.533	45.455	0.25	0.00	0.00	3.93
1943	2046	3.043713	TCGTTGCCTGCAGCTTCG	61.044	61.111	8.66	10.04	44.23	3.79
1952	2055	1.225855	CTGCAGCTTCGTTGTACCAA	58.774	50.000	0.00	0.00	0.00	3.67
1982	2085	1.707106	TCGGGGCCGAGTCATTTATA	58.293	50.000	0.00	0.00	44.01	0.98
2076	2182	1.395954	CGCCACAGTCATCAATGTCAG	59.604	52.381	0.00	0.00	0.00	3.51
2175	2287	5.182190	AGCGGTACATCATCTATAGTGTCAG	59.818	44.000	0.00	0.00	0.00	3.51
2213	2325	1.606668	GGGACGAGCAACAACATTCAA	59.393	47.619	0.00	0.00	0.00	2.69
2237	2349	4.262164	GGAAATGGTGTTGCAACAATCTCT	60.262	41.667	32.61	17.59	41.21	3.10
2270	2382	1.208535	TCGGTCAACATGGGTATGGAC	59.791	52.381	0.00	0.00	38.66	4.02
2329	2441	7.693951	GCGAGAATATATAAATGTGTTCATGCC	59.306	37.037	0.00	0.00	34.19	4.40
2478	2644	7.097834	GGTGTATACCTAGCTACATTTCCATC	58.902	42.308	0.54	0.00	43.97	3.51
2492	2658	7.696992	ACATTTCCATCCGTTGTTAAATACT	57.303	32.000	0.00	0.00	0.00	2.12
2629	2806	2.228545	TTGGGCATGCACCAATCTAA	57.771	45.000	27.00	9.78	42.75	2.10
2630	2807	2.457813	TGGGCATGCACCAATCTAAT	57.542	45.000	19.33	0.00	34.44	1.73
2670	2847	9.606631	ATTCTATGAACTCTTATGTCCACTTTC	57.393	33.333	0.00	0.00	0.00	2.62
2672	2849	8.593679	TCTATGAACTCTTATGTCCACTTTCAA	58.406	33.333	0.00	0.00	0.00	2.69
2673	2850	9.219603	CTATGAACTCTTATGTCCACTTTCAAA	57.780	33.333	0.00	0.00	0.00	2.69
2675	2852	8.287439	TGAACTCTTATGTCCACTTTCAAAAA	57.713	30.769	0.00	0.00	0.00	1.94
2839	3018	8.388656	TCCAAGTTATAAGAAATCAGTAGGGT	57.611	34.615	0.00	0.00	0.00	4.34
2840	3019	9.496710	TCCAAGTTATAAGAAATCAGTAGGGTA	57.503	33.333	0.00	0.00	0.00	3.69
2841	3020	9.543783	CCAAGTTATAAGAAATCAGTAGGGTAC	57.456	37.037	0.00	0.00	0.00	3.34
2842	3021	9.245962	CAAGTTATAAGAAATCAGTAGGGTACG	57.754	37.037	0.00	0.00	0.00	3.67
2843	3022	7.949434	AGTTATAAGAAATCAGTAGGGTACGG	58.051	38.462	0.00	0.00	0.00	4.02
2881	3060	7.834681	ACCACACAATACTTCTACATCTCTAGA	59.165	37.037	0.00	0.00	0.00	2.43
2922	3101	4.250464	GGTATCTGTCGTGGAATTGTCAA	58.750	43.478	0.00	0.00	0.00	3.18
2941	3120	4.100808	GTCAAGGCAGATGTCCTAGAGAAT	59.899	45.833	0.00	0.00	32.65	2.40
2962	3141	1.207329	GGACTTAGTCGTGGAGCCATT	59.793	52.381	6.27	0.00	32.65	3.16
2968	3147	2.741985	CGTGGAGCCATTGCGACA	60.742	61.111	0.00	0.00	44.33	4.35
2981	3160	2.248280	TGCGACAGGTTAGCTTGAAA	57.752	45.000	0.00	0.00	0.00	2.69
3087	3266	4.511786	TGGAATTGATGGGGTTTCGATA	57.488	40.909	0.00	0.00	0.00	2.92
3124	3303	1.862008	GCTTCGCCTATGTCTCGAGTG	60.862	57.143	13.13	0.00	33.56	3.51
3383	3566	0.337082	TTGACCCGACCCAGATAGGA	59.663	55.000	0.00	0.00	41.22	2.94
3458	3641	4.855340	ACGGGTTCATGTCAATCCTTTAT	58.145	39.130	0.00	0.00	0.00	1.40
3459	3642	5.996644	ACGGGTTCATGTCAATCCTTTATA	58.003	37.500	0.00	0.00	0.00	0.98

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
103	104	1.557371	CCAAAAGGGGGTGTTTTGTGT	59.443	47.619	7.35	0.00	41.40	3.72
143	144	1.150081	GCCTCCAGCTATGCATGGT	59.850	57.895	10.16	2.08	37.84	3.55
147	148	2.187685	CACGCCTCCAGCTATGCA	59.812	61.111	0.00	0.00	40.39	3.96
261	262	6.775629	AGTTTCTTGGCTTTACTTACATTCCA	59.224	34.615	0.00	0.00	0.00	3.53
266	267	7.224297	AGATCAGTTTCTTGGCTTTACTTACA	58.776	34.615	0.00	0.00	0.00	2.41
313	314	4.446212	TGTATGTACAAAGACGCACGTCG	61.446	47.826	16.66	6.31	40.48	5.12
321	322	5.862924	AGCACACATGTATGTACAAAGAC	57.137	39.130	5.92	0.00	39.39	3.01
350	351	5.995282	CGGGATTGGTATAATTTGCACTCTA	59.005	40.000	0.00	0.00	0.00	2.43
368	369	2.809706	GCATGCATGTGCGGGATT	59.190	55.556	26.79	0.00	45.83	3.01
433	434	6.295249	CCCATAAAAACAACACCTTTGGATT	58.705	36.000	0.00	0.00	0.00	3.01
462	463	9.365906	AGTAACAATCACATCTCTATCTCATCT	57.634	33.333	0.00	0.00	0.00	2.90
463	464	9.409312	CAGTAACAATCACATCTCTATCTCATC	57.591	37.037	0.00	0.00	0.00	2.92
464	465	9.140874	TCAGTAACAATCACATCTCTATCTCAT	57.859	33.333	0.00	0.00	0.00	2.90
465	466	8.409371	GTCAGTAACAATCACATCTCTATCTCA	58.591	37.037	0.00	0.00	0.00	3.27
470	482	7.468141	AGTGTCAGTAACAATCACATCTCTA	57.532	36.000	0.00	0.00	40.31	2.43
501	513	5.617528	AATATGATGGGTACAACGTGGTA	57.382	39.130	0.00	0.00	0.00	3.25
507	519	9.905713	ATGGATGTATAATATGATGGGTACAAC	57.094	33.333	0.00	0.00	0.00	3.32
524	536	4.353191	AGGAGATGGCTTTGATGGATGTAT	59.647	41.667	0.00	0.00	0.00	2.29
525	537	3.718434	AGGAGATGGCTTTGATGGATGTA	59.282	43.478	0.00	0.00	0.00	2.29
612	675	9.557061	CAGCCTATGCATTCATATCAATATACT	57.443	33.333	3.54	0.00	41.13	2.12
636	699	8.072321	ACTAGTATCCTATGTATGCATTCCAG	57.928	38.462	3.54	0.00	36.58	3.86
959	1053	1.517242	AGAAACTTGCCAGAGAAGCG	58.483	50.000	0.00	0.00	0.00	4.68
1096	1190	3.305403	GCTCTTTCTTAAAAGGGTGGTGC	60.305	47.826	0.22	0.00	43.71	5.01
1257	1351	3.446161	CCACCTCCTCGATTACTGTAACA	59.554	47.826	1.73	0.00	0.00	2.41
1260	1354	3.657398	TCCACCTCCTCGATTACTGTA	57.343	47.619	0.00	0.00	0.00	2.74
1310	1405	9.379770	CCTTCTCCCCCATATTTACATTATTTT	57.620	33.333	0.00	0.00	0.00	1.82
1730	1826	5.148502	ACATACTCCTCCTACCAACATAGG	58.851	45.833	0.00	0.00	42.91	2.57
1754	1850	8.341173	GTGCTCTTATGGAAGATTCTACAAATG	58.659	37.037	0.00	0.00	40.95	2.32
1755	1851	8.270744	AGTGCTCTTATGGAAGATTCTACAAAT	58.729	33.333	0.00	0.00	40.95	2.32
1840	1943	1.271379	GGAAGCCCTGTTGTTGCTCTA	60.271	52.381	0.00	0.00	33.36	2.43
1901	2004	0.468226	GTGGGGCTAATGACGATGGA	59.532	55.000	0.00	0.00	0.00	3.41
1952	2055	1.101049	CGGCCCCGAAGTTATGCATT	61.101	55.000	3.54	0.00	42.83	3.56
1973	2076	5.049680	CACCGCACTACCCATTATAAATGAC	60.050	44.000	1.23	0.00	0.00	3.06
1982	2085	0.676782	GAAGCACCGCACTACCCATT	60.677	55.000	0.00	0.00	0.00	3.16
2076	2182	1.532868	CTGCTGCTGGTTGTTGTAGAC	59.467	52.381	0.00	0.00	0.00	2.59
2175	2287	4.698575	GTCCCAGTTAGAACATCCTCATC	58.301	47.826	0.00	0.00	0.00	2.92
2213	2325	3.642848	AGATTGTTGCAACACCATTTCCT	59.357	39.130	31.17	16.19	38.92	3.36
2237	2349	2.676839	GTTGACCGACGAGATCTCACTA	59.323	50.000	22.31	0.00	0.00	2.74
2270	2382	3.792401	TCATTAGTAGTTCCACATGCCG	58.208	45.455	0.00	0.00	0.00	5.69
2478	2644	7.136119	ACACATTGTCAAGTATTTAACAACGG	58.864	34.615	0.00	0.00	34.99	4.44
2643	2820	9.965902	AAAGTGGACATAAGAGTTCATAGAATT	57.034	29.630	0.00	0.00	27.94	2.17
2645	2822	8.593679	TGAAAGTGGACATAAGAGTTCATAGAA	58.406	33.333	0.00	0.00	27.94	2.10
2839	3018	6.283544	TGTGTGGTAAGATCAAATACCGTA	57.716	37.500	14.14	6.26	43.71	4.02
2840	3019	5.155278	TGTGTGGTAAGATCAAATACCGT	57.845	39.130	14.14	0.00	43.71	4.83
2841	3020	6.677781	ATTGTGTGGTAAGATCAAATACCG	57.322	37.500	14.14	0.00	43.71	4.02
2842	3021	8.732746	AGTATTGTGTGGTAAGATCAAATACC	57.267	34.615	12.86	12.86	41.62	2.73
2922	3101	2.971330	CCATTCTCTAGGACATCTGCCT	59.029	50.000	0.00	0.00	39.56	4.75
2941	3120	0.541063	TGGCTCCACGACTAAGTCCA	60.541	55.000	0.00	0.00	0.00	4.02
2962	3141	2.143122	CTTTCAAGCTAACCTGTCGCA	58.857	47.619	0.00	0.00	0.00	5.10
2968	3147	5.535030	CACTTTAACCCTTTCAAGCTAACCT	59.465	40.000	0.00	0.00	0.00	3.50
2981	3160	1.423921	CCCTGTGTCCACTTTAACCCT	59.576	52.381	0.00	0.00	0.00	4.34
3087	3266	2.959465	AGCTTGTTTGCTCCCTAGTT	57.041	45.000	0.00	0.00	39.34	2.24
3124	3303	1.784525	CGGTTCAGAGACAGACAACC	58.215	55.000	0.00	0.00	34.31	3.77
3183	3365	1.141053	GTGTTGGGACTCTGTGAACCT	59.859	52.381	0.00	0.00	0.00	3.50
3383	3566	1.818959	TACTGCTGGGCGTAAACCGT	61.819	55.000	0.00	0.00	39.32	4.83
3458	3641	9.071276	AGAAGATGTTGAAGATGAAGCTTTTTA	57.929	29.630	0.00	0.00	0.00	1.52
3459	3642	7.949434	AGAAGATGTTGAAGATGAAGCTTTTT	58.051	30.769	0.00	0.00	0.00	1.94

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.