Multiple sequence alignment - TraesCS7A01G194400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G194400 chr7A 100.000 9187 0 0 1 9187 152551295 152542109 0.000000e+00 16966.0
1 TraesCS7A01G194400 chr7A 90.286 175 17 0 3502 3676 624927573 624927747 7.180000e-56 230.0
2 TraesCS7A01G194400 chr7D 94.428 3015 92 32 6057 9062 152129711 152126764 0.000000e+00 4567.0
3 TraesCS7A01G194400 chr7D 96.457 2738 51 26 4117 6818 152131682 152128955 0.000000e+00 4477.0
4 TraesCS7A01G194400 chr7D 95.897 2681 91 10 846 3512 152135101 152132426 0.000000e+00 4324.0
5 TraesCS7A01G194400 chr7D 97.644 382 7 2 3671 4051 152132427 152132047 0.000000e+00 654.0
6 TraesCS7A01G194400 chr7D 91.339 127 5 3 9063 9187 152126339 152126217 1.590000e-37 169.0
7 TraesCS7A01G194400 chr7B 94.310 2197 105 13 6809 8992 114182487 114180298 0.000000e+00 3347.0
8 TraesCS7A01G194400 chr7B 92.491 1851 83 22 4973 6818 114184248 114182449 0.000000e+00 2597.0
9 TraesCS7A01G194400 chr7B 92.247 1277 50 13 2246 3512 114186480 114185243 0.000000e+00 1764.0
10 TraesCS7A01G194400 chr7B 93.016 1031 34 15 3671 4692 114185244 114184243 0.000000e+00 1471.0
11 TraesCS7A01G194400 chr7B 91.489 987 47 10 846 1818 114194073 114193110 0.000000e+00 1323.0
12 TraesCS7A01G194400 chr7B 88.204 763 60 16 4 759 114194816 114194077 0.000000e+00 883.0
13 TraesCS7A01G194400 chr7B 90.000 210 15 4 2045 2251 114193114 114192908 5.470000e-67 267.0
14 TraesCS7A01G194400 chr7B 90.857 175 10 3 9015 9187 114180228 114180058 7.180000e-56 230.0
15 TraesCS7A01G194400 chr2D 93.293 164 11 0 3511 3674 134301488 134301651 9.220000e-60 243.0
16 TraesCS7A01G194400 chr2D 92.771 166 11 1 3508 3673 296364046 296364210 1.190000e-58 239.0
17 TraesCS7A01G194400 chr2B 93.252 163 10 1 3511 3673 366017679 366017518 1.190000e-58 239.0
18 TraesCS7A01G194400 chr2B 89.691 97 8 2 748 842 88485981 88486077 1.250000e-23 122.0
19 TraesCS7A01G194400 chr6A 92.683 164 12 0 3511 3674 151467131 151466968 4.290000e-58 237.0
20 TraesCS7A01G194400 chr6A 86.598 194 26 0 1846 2039 101985501 101985694 2.010000e-51 215.0
21 TraesCS7A01G194400 chr5D 92.683 164 12 0 3509 3672 529218164 529218327 4.290000e-58 237.0
22 TraesCS7A01G194400 chr5D 90.857 175 15 1 3504 3677 377987994 377988168 5.550000e-57 233.0
23 TraesCS7A01G194400 chr5D 90.055 181 14 4 3495 3674 528616611 528616788 1.990000e-56 231.0
24 TraesCS7A01G194400 chr5D 82.305 243 40 2 1811 2050 435163030 435163272 3.360000e-49 207.0
25 TraesCS7A01G194400 chr3D 84.167 240 36 1 1811 2048 508323730 508323969 1.990000e-56 231.0
26 TraesCS7A01G194400 chr3D 83.871 248 33 3 1810 2054 81373507 81373750 7.180000e-56 230.0
27 TraesCS7A01G194400 chr3D 84.906 212 28 4 1839 2049 589577925 589577717 2.600000e-50 211.0
28 TraesCS7A01G194400 chr2A 90.000 180 17 1 3499 3677 279066263 279066084 1.990000e-56 231.0
29 TraesCS7A01G194400 chr6B 84.298 242 31 6 1812 2050 680323787 680323550 7.180000e-56 230.0
30 TraesCS7A01G194400 chr6B 84.649 228 30 4 1810 2034 481042796 481043021 1.200000e-53 222.0
31 TraesCS7A01G194400 chr6B 90.426 94 8 1 749 842 168677796 168677704 1.250000e-23 122.0
32 TraesCS7A01G194400 chr6B 90.426 94 8 1 749 842 312506295 312506387 1.250000e-23 122.0
33 TraesCS7A01G194400 chr6B 90.426 94 8 1 749 842 409456281 409456373 1.250000e-23 122.0
34 TraesCS7A01G194400 chr3A 84.583 240 26 3 1821 2049 9747705 9747466 2.580000e-55 228.0
35 TraesCS7A01G194400 chr4D 90.385 104 10 0 2108 2211 248932297 248932400 4.470000e-28 137.0
36 TraesCS7A01G194400 chr4B 90.385 104 7 2 2108 2211 252009593 252009693 5.790000e-27 134.0
37 TraesCS7A01G194400 chr4B 90.426 94 8 1 749 842 229410341 229410433 1.250000e-23 122.0
38 TraesCS7A01G194400 chr1A 90.722 97 8 1 754 849 65334662 65334566 2.690000e-25 128.0
39 TraesCS7A01G194400 chr1A 86.207 87 11 1 674 760 129393369 129393284 9.820000e-15 93.5
40 TraesCS7A01G194400 chr5B 90.426 94 8 1 749 842 67931962 67931870 1.250000e-23 122.0
41 TraesCS7A01G194400 chr1B 90.426 94 8 1 749 842 119167930 119168022 1.250000e-23 122.0
42 TraesCS7A01G194400 chr1B 90.426 94 8 1 749 842 482063677 482063585 1.250000e-23 122.0
43 TraesCS7A01G194400 chr4A 87.619 105 9 3 2108 2211 238398184 238398083 1.620000e-22 119.0
44 TraesCS7A01G194400 chr3B 76.724 232 35 12 33 250 177722066 177722292 2.710000e-20 111.0
45 TraesCS7A01G194400 chr6D 100.000 29 0 0 5721 5749 419613434 419613406 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G194400 chr7A 152542109 152551295 9186 True 16966.000000 16966 100.000000 1 9187 1 chr7A.!!$R1 9186
1 TraesCS7A01G194400 chr7D 152126217 152135101 8884 True 2838.200000 4567 95.153000 846 9187 5 chr7D.!!$R1 8341
2 TraesCS7A01G194400 chr7B 114180058 114186480 6422 True 1881.800000 3347 92.584200 2246 9187 5 chr7B.!!$R1 6941
3 TraesCS7A01G194400 chr7B 114192908 114194816 1908 True 824.333333 1323 89.897667 4 2251 3 chr7B.!!$R2 2247

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
695 700 0.319083 ATACCAAACACGAGCACGGA 59.681 50.000 8.74 0.00 44.46 4.69 F
1535 1552 0.390860 ATCACGAGTAGATGCCCTGC 59.609 55.000 0.00 0.00 0.00 4.85 F
2211 2245 0.619505 AGCTGCTGGAGATGCTCTTT 59.380 50.000 0.00 0.00 0.00 2.52 F
2528 2570 0.389817 TGGTTTCGTCCTGATCGCTG 60.390 55.000 0.00 0.00 0.00 5.18 F
2568 2610 1.266867 ATTCCAATTGTGCCTGGCCC 61.267 55.000 17.53 4.89 32.33 5.80 F
3629 3673 1.747709 ACTCCGTATGTAGTCTGCGT 58.252 50.000 0.00 0.00 0.00 5.24 F
4813 5168 0.034059 GGTCCAGATATGGCGTGGAG 59.966 60.000 0.00 0.00 41.11 3.86 F
6296 6680 3.582647 ACCATGACTTCACTGTGGATGTA 59.417 43.478 8.11 0.00 34.13 2.29 F
6879 7266 0.670162 GGTTGCATGTTGCTCTGTGT 59.330 50.000 0.75 0.00 45.31 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1646 0.174389 ACGCTATCAGCTGGTCAGTG 59.826 55.000 15.13 16.26 39.60 3.66 R
2527 2569 0.805322 CAACAAAAAGTGCTGCCGCA 60.805 50.000 0.00 0.00 45.60 5.69 R
3746 3790 0.178995 TCATGCAACACTGGCCAGAA 60.179 50.000 39.19 16.29 0.00 3.02 R
4095 4141 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66 R
4127 4472 4.935205 TGCATGTTATGTCACAAGAGGTAC 59.065 41.667 0.00 0.00 0.00 3.34 R
5285 5640 0.180406 ATCCCTCGTTCCCAAATCCG 59.820 55.000 0.00 0.00 0.00 4.18 R
6654 7038 0.401738 CCACCTTTTCAGCTCCCTGA 59.598 55.000 0.00 0.00 46.03 3.86 R
7124 7511 1.307647 CCCCTCTGGTCCAATTGGG 59.692 63.158 24.29 8.35 35.41 4.12 R
8564 8959 0.249741 CCCTTTATCTACCCACCGCG 60.250 60.000 0.00 0.00 0.00 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 0.619543 TACTAGAAGGGGGCCACCAC 60.620 60.000 30.24 20.30 42.91 4.16
146 147 1.458588 GAAGGGGGCCACCACAAAA 60.459 57.895 30.24 0.00 45.22 2.44
196 200 3.357079 CACGTGAGCTTGTGGGCC 61.357 66.667 10.90 0.00 32.47 5.80
200 204 3.185203 TGAGCTTGTGGGCCCCTT 61.185 61.111 22.27 0.00 0.00 3.95
237 241 4.166144 CCCTACCTCCAAGTCCATAAACAT 59.834 45.833 0.00 0.00 0.00 2.71
238 242 5.368989 CCTACCTCCAAGTCCATAAACATC 58.631 45.833 0.00 0.00 0.00 3.06
246 250 4.138487 AGTCCATAAACATCGTCTTCCC 57.862 45.455 0.00 0.00 0.00 3.97
247 251 2.864343 GTCCATAAACATCGTCTTCCCG 59.136 50.000 0.00 0.00 0.00 5.14
277 281 0.734889 GCCACCATCTCCATTCAACG 59.265 55.000 0.00 0.00 0.00 4.10
357 361 1.255667 ACCTTCACCGGTAGATGCGT 61.256 55.000 6.87 7.33 34.94 5.24
365 369 3.189910 CACCGGTAGATGCGTAATAGCTA 59.810 47.826 6.87 0.00 38.13 3.32
370 374 2.673833 AGATGCGTAATAGCTAACGGC 58.326 47.619 17.26 10.30 39.46 5.68
398 402 4.779733 GGCGGTGGAGAGGGAGGA 62.780 72.222 0.00 0.00 0.00 3.71
401 405 2.060980 CGGTGGAGAGGGAGGAAGG 61.061 68.421 0.00 0.00 0.00 3.46
402 406 1.392534 GGTGGAGAGGGAGGAAGGA 59.607 63.158 0.00 0.00 0.00 3.36
408 412 1.162951 AGAGGGAGGAAGGAAGGGGA 61.163 60.000 0.00 0.00 0.00 4.81
433 437 4.028490 TGGTGGCGGCTAGGGTTG 62.028 66.667 11.43 0.00 0.00 3.77
452 456 2.202932 GTCGCTCCCATGTCGCAT 60.203 61.111 0.00 0.00 0.00 4.73
455 459 2.242572 CGCTCCCATGTCGCATGAG 61.243 63.158 17.72 10.94 0.00 2.90
491 495 1.657804 CTAGGGGGAGTGGTGTTCTT 58.342 55.000 0.00 0.00 0.00 2.52
510 514 4.469657 TCTTGTGCCACTTTATTCAACCT 58.530 39.130 0.00 0.00 0.00 3.50
577 582 4.929808 TCTCTAAGCGAATTTCAGTTGACC 59.070 41.667 0.00 0.00 0.00 4.02
585 590 5.795441 GCGAATTTCAGTTGACCATTCTTAC 59.205 40.000 0.00 0.00 0.00 2.34
605 610 4.963318 ACAGAAAGAGGTGAGATGAACA 57.037 40.909 0.00 0.00 0.00 3.18
607 612 5.303971 ACAGAAAGAGGTGAGATGAACAAG 58.696 41.667 0.00 0.00 0.00 3.16
615 620 5.006386 AGGTGAGATGAACAAGTCCATTTC 58.994 41.667 0.00 0.00 0.00 2.17
616 621 4.761739 GGTGAGATGAACAAGTCCATTTCA 59.238 41.667 0.00 0.00 33.35 2.69
617 622 5.335191 GGTGAGATGAACAAGTCCATTTCAC 60.335 44.000 12.58 12.58 45.95 3.18
618 623 5.471456 GTGAGATGAACAAGTCCATTTCACT 59.529 40.000 13.38 0.00 44.59 3.41
619 624 5.702670 TGAGATGAACAAGTCCATTTCACTC 59.297 40.000 0.00 0.00 31.60 3.51
620 625 5.006386 AGATGAACAAGTCCATTTCACTCC 58.994 41.667 0.00 0.00 32.21 3.85
621 626 4.163441 TGAACAAGTCCATTTCACTCCA 57.837 40.909 0.00 0.00 0.00 3.86
622 627 4.728772 TGAACAAGTCCATTTCACTCCAT 58.271 39.130 0.00 0.00 0.00 3.41
623 628 4.761739 TGAACAAGTCCATTTCACTCCATC 59.238 41.667 0.00 0.00 0.00 3.51
624 629 3.690460 ACAAGTCCATTTCACTCCATCC 58.310 45.455 0.00 0.00 0.00 3.51
625 630 3.019564 CAAGTCCATTTCACTCCATCCC 58.980 50.000 0.00 0.00 0.00 3.85
626 631 2.566746 AGTCCATTTCACTCCATCCCT 58.433 47.619 0.00 0.00 0.00 4.20
627 632 2.507471 AGTCCATTTCACTCCATCCCTC 59.493 50.000 0.00 0.00 0.00 4.30
628 633 2.239654 GTCCATTTCACTCCATCCCTCA 59.760 50.000 0.00 0.00 0.00 3.86
629 634 2.918934 TCCATTTCACTCCATCCCTCAA 59.081 45.455 0.00 0.00 0.00 3.02
630 635 3.333381 TCCATTTCACTCCATCCCTCAAA 59.667 43.478 0.00 0.00 0.00 2.69
631 636 3.445096 CCATTTCACTCCATCCCTCAAAC 59.555 47.826 0.00 0.00 0.00 2.93
632 637 2.879103 TTCACTCCATCCCTCAAACC 57.121 50.000 0.00 0.00 0.00 3.27
633 638 1.741028 TCACTCCATCCCTCAAACCA 58.259 50.000 0.00 0.00 0.00 3.67
644 649 4.285863 TCCCTCAAACCAGACACAAAAAT 58.714 39.130 0.00 0.00 0.00 1.82
663 668 6.446659 AAAATTTGTAGCCATTTCGTTTCG 57.553 33.333 0.00 0.00 0.00 3.46
687 692 4.143431 CCGAATTTTTGCATACCAAACACG 60.143 41.667 0.00 0.00 42.81 4.49
695 700 0.319083 ATACCAAACACGAGCACGGA 59.681 50.000 8.74 0.00 44.46 4.69
703 708 2.582498 CGAGCACGGAATCGACCC 60.582 66.667 0.00 0.00 41.40 4.46
742 747 7.546316 TGAAACCATGACATTTCATTATGCTTG 59.454 33.333 12.83 0.00 40.79 4.01
749 754 4.776837 ACATTTCATTATGCTTGGTTCCCA 59.223 37.500 0.00 0.00 0.00 4.37
767 772 6.447162 GTTCCCAAACCAAATACTTTCTCTG 58.553 40.000 0.00 0.00 0.00 3.35
768 773 5.701224 TCCCAAACCAAATACTTTCTCTGT 58.299 37.500 0.00 0.00 0.00 3.41
769 774 5.768164 TCCCAAACCAAATACTTTCTCTGTC 59.232 40.000 0.00 0.00 0.00 3.51
770 775 5.770162 CCCAAACCAAATACTTTCTCTGTCT 59.230 40.000 0.00 0.00 0.00 3.41
771 776 6.072452 CCCAAACCAAATACTTTCTCTGTCTC 60.072 42.308 0.00 0.00 0.00 3.36
772 777 6.486657 CCAAACCAAATACTTTCTCTGTCTCA 59.513 38.462 0.00 0.00 0.00 3.27
773 778 7.013274 CCAAACCAAATACTTTCTCTGTCTCAA 59.987 37.037 0.00 0.00 0.00 3.02
774 779 8.405531 CAAACCAAATACTTTCTCTGTCTCAAA 58.594 33.333 0.00 0.00 0.00 2.69
775 780 8.519799 AACCAAATACTTTCTCTGTCTCAAAA 57.480 30.769 0.00 0.00 0.00 2.44
776 781 8.697507 ACCAAATACTTTCTCTGTCTCAAAAT 57.302 30.769 0.00 0.00 0.00 1.82
777 782 9.793259 ACCAAATACTTTCTCTGTCTCAAAATA 57.207 29.630 0.00 0.00 0.00 1.40
786 791 9.706691 TTTCTCTGTCTCAAAATATAAGAACGT 57.293 29.630 0.00 0.00 0.00 3.99
787 792 9.706691 TTCTCTGTCTCAAAATATAAGAACGTT 57.293 29.630 0.00 0.00 0.00 3.99
788 793 9.706691 TCTCTGTCTCAAAATATAAGAACGTTT 57.293 29.630 0.46 0.00 0.00 3.60
836 841 8.848474 AATGTTCTTATATTATGGAACGGAGG 57.152 34.615 14.09 0.00 40.34 4.30
837 842 6.765403 TGTTCTTATATTATGGAACGGAGGG 58.235 40.000 14.09 0.00 40.34 4.30
838 843 6.555738 TGTTCTTATATTATGGAACGGAGGGA 59.444 38.462 14.09 0.00 40.34 4.20
839 844 6.852420 TCTTATATTATGGAACGGAGGGAG 57.148 41.667 0.00 0.00 0.00 4.30
840 845 6.320518 TCTTATATTATGGAACGGAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
841 846 7.472741 TCTTATATTATGGAACGGAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
842 847 5.997384 ATATTATGGAACGGAGGGAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
843 848 2.832643 TATGGAACGGAGGGAGTACA 57.167 50.000 0.00 0.00 0.00 2.90
844 849 2.176247 ATGGAACGGAGGGAGTACAT 57.824 50.000 0.00 0.00 0.00 2.29
950 959 2.537625 GCTCTATCATGTCGCAGTTCAC 59.462 50.000 0.00 0.00 0.00 3.18
952 961 3.774066 TCTATCATGTCGCAGTTCACTG 58.226 45.455 2.31 2.31 46.40 3.66
1162 1176 3.532155 CTCCTCCTCCTTCGCCCG 61.532 72.222 0.00 0.00 0.00 6.13
1166 1180 4.728110 TCCTCCTTCGCCCGTCGA 62.728 66.667 0.00 0.00 46.88 4.20
1198 1212 2.358737 CGGCCCGAAGCTTCTGTT 60.359 61.111 23.50 0.00 43.05 3.16
1283 1297 0.736325 AGGCGTTCGACGGAATTCAG 60.736 55.000 7.93 5.85 42.82 3.02
1415 1429 4.201679 CGCTACATCGTCCCGGCA 62.202 66.667 0.00 0.00 0.00 5.69
1493 1507 7.757173 GCTTTCTCTTCCAATTTCCAACTTATC 59.243 37.037 0.00 0.00 0.00 1.75
1524 1541 5.843673 ACAGTCATCTTATCATCACGAGT 57.156 39.130 0.00 0.00 0.00 4.18
1535 1552 0.390860 ATCACGAGTAGATGCCCTGC 59.609 55.000 0.00 0.00 0.00 4.85
1563 1580 0.755686 CCCTACTGAGCACATCTCCC 59.244 60.000 0.00 0.00 41.18 4.30
1580 1597 3.695060 TCTCCCACGAAATACTCTGACTC 59.305 47.826 0.00 0.00 0.00 3.36
1588 1605 5.105554 ACGAAATACTCTGACTCTTGATGCT 60.106 40.000 0.00 0.00 0.00 3.79
1621 1645 6.402550 CCTTAGAATATGTGCACAGTGTTGAC 60.403 42.308 25.84 11.90 0.00 3.18
1622 1646 3.753272 AGAATATGTGCACAGTGTTGACC 59.247 43.478 25.84 8.44 0.00 4.02
1623 1647 2.629336 TATGTGCACAGTGTTGACCA 57.371 45.000 25.84 0.00 0.00 4.02
1624 1648 1.024271 ATGTGCACAGTGTTGACCAC 58.976 50.000 25.84 1.98 44.89 4.16
1691 1716 1.450312 GAGTGAATGCCCCTGACGG 60.450 63.158 0.00 0.00 0.00 4.79
1705 1730 1.227380 GACGGCCTGACCTATGCAG 60.227 63.158 0.00 0.00 35.61 4.41
1715 1740 2.158914 TGACCTATGCAGCGATTGATGT 60.159 45.455 0.00 0.00 32.92 3.06
1716 1741 2.216046 ACCTATGCAGCGATTGATGTG 58.784 47.619 0.00 0.00 32.92 3.21
1739 1765 5.768333 GCAACCATCTTTATTGCAAAGTC 57.232 39.130 1.71 0.00 46.37 3.01
1789 1815 9.571816 AAGAAAGAAAGACAGATTCAGAAAGAT 57.428 29.630 0.00 0.00 0.00 2.40
1818 1844 6.233434 ACCGTGAATGATTGCATGATACTAT 58.767 36.000 0.00 0.00 34.26 2.12
2038 2066 3.615224 TGGTGACTAATAAACCCGGAC 57.385 47.619 0.73 0.00 32.70 4.79
2173 2203 6.734502 TGTCAATTTCCCCTATACGTGATA 57.265 37.500 0.00 0.00 0.00 2.15
2211 2245 0.619505 AGCTGCTGGAGATGCTCTTT 59.380 50.000 0.00 0.00 0.00 2.52
2244 2278 4.602259 CACGCCTCCACACGGTGT 62.602 66.667 8.21 8.21 45.59 4.16
2275 2309 2.677836 CACATTCGGTTCCTATGTGTGG 59.322 50.000 17.69 0.00 42.48 4.17
2397 2439 3.646736 AGTTGTCTATTTACCCCAGGC 57.353 47.619 0.00 0.00 0.00 4.85
2470 2512 4.100498 AGGCCAGAAAAATAATCTGCCATG 59.900 41.667 5.01 0.00 42.36 3.66
2510 2552 6.404513 GGGCAAAAGAGAGAAGATCTTGAATG 60.405 42.308 14.00 2.02 38.84 2.67
2527 2569 0.537188 ATGGTTTCGTCCTGATCGCT 59.463 50.000 0.00 0.00 0.00 4.93
2528 2570 0.389817 TGGTTTCGTCCTGATCGCTG 60.390 55.000 0.00 0.00 0.00 5.18
2562 2604 1.270732 TGTTGCCATTCCAATTGTGCC 60.271 47.619 4.43 0.00 0.00 5.01
2568 2610 1.266867 ATTCCAATTGTGCCTGGCCC 61.267 55.000 17.53 4.89 32.33 5.80
2726 2768 4.924305 AATCTGCTCACATGTTGTTGTT 57.076 36.364 0.00 0.00 0.00 2.83
2852 2896 6.149616 AGGATCAGAATTCTGGAGAACCTAT 58.850 40.000 30.33 16.47 43.91 2.57
3000 3044 3.242608 CCGTTAACATGGCAGGTATTTCG 60.243 47.826 4.75 8.46 0.00 3.46
3074 3118 8.926715 TGTAAGACAACTAGTGTGCTATATTG 57.073 34.615 0.00 0.00 41.96 1.90
3138 3182 2.300437 CGGGGATGAGGGACTATTCTTC 59.700 54.545 0.00 0.00 41.55 2.87
3425 3469 3.505480 ATCATTGGAGATGAAGGAGCC 57.495 47.619 0.00 0.00 0.00 4.70
3510 3554 8.786898 GTCTGTTGTATACCATGCAAATCATAT 58.213 33.333 0.00 0.00 36.64 1.78
3513 3557 9.791801 TGTTGTATACCATGCAAATCATATACT 57.208 29.630 0.00 0.00 36.64 2.12
3515 3559 9.448438 TTGTATACCATGCAAATCATATACTCC 57.552 33.333 0.00 0.00 31.88 3.85
3516 3560 8.046708 TGTATACCATGCAAATCATATACTCCC 58.953 37.037 0.00 0.00 33.19 4.30
3517 3561 5.589367 ACCATGCAAATCATATACTCCCT 57.411 39.130 0.00 0.00 33.19 4.20
3518 3562 5.564550 ACCATGCAAATCATATACTCCCTC 58.435 41.667 0.00 0.00 33.19 4.30
3519 3563 4.946157 CCATGCAAATCATATACTCCCTCC 59.054 45.833 0.00 0.00 33.19 4.30
3520 3564 5.515359 CCATGCAAATCATATACTCCCTCCA 60.515 44.000 0.00 0.00 33.19 3.86
3521 3565 5.848286 TGCAAATCATATACTCCCTCCAT 57.152 39.130 0.00 0.00 0.00 3.41
3522 3566 6.204852 TGCAAATCATATACTCCCTCCATT 57.795 37.500 0.00 0.00 0.00 3.16
3523 3567 6.240894 TGCAAATCATATACTCCCTCCATTC 58.759 40.000 0.00 0.00 0.00 2.67
3524 3568 5.649831 GCAAATCATATACTCCCTCCATTCC 59.350 44.000 0.00 0.00 0.00 3.01
3525 3569 6.523150 GCAAATCATATACTCCCTCCATTCCT 60.523 42.308 0.00 0.00 0.00 3.36
3526 3570 7.311297 GCAAATCATATACTCCCTCCATTCCTA 60.311 40.741 0.00 0.00 0.00 2.94
3527 3571 8.605947 CAAATCATATACTCCCTCCATTCCTAA 58.394 37.037 0.00 0.00 0.00 2.69
3528 3572 8.757307 AATCATATACTCCCTCCATTCCTAAA 57.243 34.615 0.00 0.00 0.00 1.85
3529 3573 8.940012 ATCATATACTCCCTCCATTCCTAAAT 57.060 34.615 0.00 0.00 0.00 1.40
3535 3579 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
3536 3580 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3537 3581 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3538 3582 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
3539 3583 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
3540 3584 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
3614 3658 6.388278 AGTGTAGATTCACTCGTTTTACTCC 58.612 40.000 0.00 0.00 44.07 3.85
3615 3659 5.285607 GTGTAGATTCACTCGTTTTACTCCG 59.714 44.000 0.00 0.00 35.68 4.63
3616 3660 4.516365 AGATTCACTCGTTTTACTCCGT 57.484 40.909 0.00 0.00 0.00 4.69
3617 3661 5.633830 AGATTCACTCGTTTTACTCCGTA 57.366 39.130 0.00 0.00 0.00 4.02
3618 3662 6.205101 AGATTCACTCGTTTTACTCCGTAT 57.795 37.500 0.00 0.00 0.00 3.06
3619 3663 6.034591 AGATTCACTCGTTTTACTCCGTATG 58.965 40.000 0.00 0.00 0.00 2.39
3620 3664 4.771590 TCACTCGTTTTACTCCGTATGT 57.228 40.909 0.00 0.00 0.00 2.29
3621 3665 5.878332 TCACTCGTTTTACTCCGTATGTA 57.122 39.130 0.00 0.00 0.00 2.29
3622 3666 5.872635 TCACTCGTTTTACTCCGTATGTAG 58.127 41.667 0.00 0.00 0.00 2.74
3623 3667 5.412594 TCACTCGTTTTACTCCGTATGTAGT 59.587 40.000 0.00 0.00 0.00 2.73
3624 3668 5.736358 CACTCGTTTTACTCCGTATGTAGTC 59.264 44.000 0.00 0.00 0.00 2.59
3625 3669 5.645497 ACTCGTTTTACTCCGTATGTAGTCT 59.355 40.000 0.00 0.00 0.00 3.24
3626 3670 5.872635 TCGTTTTACTCCGTATGTAGTCTG 58.127 41.667 0.00 0.00 0.00 3.51
3627 3671 4.498323 CGTTTTACTCCGTATGTAGTCTGC 59.502 45.833 0.00 0.00 0.00 4.26
3628 3672 3.957671 TTACTCCGTATGTAGTCTGCG 57.042 47.619 0.00 0.00 0.00 5.18
3629 3673 1.747709 ACTCCGTATGTAGTCTGCGT 58.252 50.000 0.00 0.00 0.00 5.24
3630 3674 2.089980 ACTCCGTATGTAGTCTGCGTT 58.910 47.619 0.00 0.00 0.00 4.84
3631 3675 2.159421 ACTCCGTATGTAGTCTGCGTTG 60.159 50.000 0.00 0.00 0.00 4.10
3632 3676 2.086094 TCCGTATGTAGTCTGCGTTGA 58.914 47.619 0.00 0.00 0.00 3.18
3633 3677 2.488937 TCCGTATGTAGTCTGCGTTGAA 59.511 45.455 0.00 0.00 0.00 2.69
3634 3678 3.057386 TCCGTATGTAGTCTGCGTTGAAA 60.057 43.478 0.00 0.00 0.00 2.69
3635 3679 3.863424 CCGTATGTAGTCTGCGTTGAAAT 59.137 43.478 0.00 0.00 0.00 2.17
3636 3680 4.026804 CCGTATGTAGTCTGCGTTGAAATC 60.027 45.833 0.00 0.00 0.00 2.17
3637 3681 4.798907 CGTATGTAGTCTGCGTTGAAATCT 59.201 41.667 0.00 0.00 0.00 2.40
3638 3682 5.052304 CGTATGTAGTCTGCGTTGAAATCTC 60.052 44.000 0.00 0.00 0.00 2.75
3639 3683 4.521130 TGTAGTCTGCGTTGAAATCTCT 57.479 40.909 0.00 0.00 0.00 3.10
3640 3684 5.638596 TGTAGTCTGCGTTGAAATCTCTA 57.361 39.130 0.00 0.00 0.00 2.43
3641 3685 6.020971 TGTAGTCTGCGTTGAAATCTCTAA 57.979 37.500 0.00 0.00 0.00 2.10
3642 3686 6.452242 TGTAGTCTGCGTTGAAATCTCTAAA 58.548 36.000 0.00 0.00 0.00 1.85
3643 3687 6.926826 TGTAGTCTGCGTTGAAATCTCTAAAA 59.073 34.615 0.00 0.00 0.00 1.52
3644 3688 6.861065 AGTCTGCGTTGAAATCTCTAAAAA 57.139 33.333 0.00 0.00 0.00 1.94
3645 3689 6.892691 AGTCTGCGTTGAAATCTCTAAAAAG 58.107 36.000 0.00 0.00 0.00 2.27
3646 3690 6.706270 AGTCTGCGTTGAAATCTCTAAAAAGA 59.294 34.615 0.00 0.00 0.00 2.52
3647 3691 6.792726 GTCTGCGTTGAAATCTCTAAAAAGAC 59.207 38.462 0.00 0.00 0.00 3.01
3648 3692 6.706270 TCTGCGTTGAAATCTCTAAAAAGACT 59.294 34.615 0.00 0.00 0.00 3.24
3649 3693 7.226720 TCTGCGTTGAAATCTCTAAAAAGACTT 59.773 33.333 0.00 0.00 0.00 3.01
3650 3694 8.373048 TGCGTTGAAATCTCTAAAAAGACTTA 57.627 30.769 0.00 0.00 0.00 2.24
3651 3695 8.999431 TGCGTTGAAATCTCTAAAAAGACTTAT 58.001 29.630 0.00 0.00 0.00 1.73
3667 3711 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
3668 3712 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
3669 3713 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
3711 3755 8.032952 TGTGCTCTGAAATTGTAGAGTAAATG 57.967 34.615 16.31 0.00 41.88 2.32
4069 4115 5.119694 GTTTCCTCTCTCTCTCTCTCTCTC 58.880 50.000 0.00 0.00 0.00 3.20
4070 4116 4.271807 TCCTCTCTCTCTCTCTCTCTCT 57.728 50.000 0.00 0.00 0.00 3.10
4071 4117 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
4073 4119 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
4075 4121 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4076 4122 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4077 4123 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4078 4124 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4079 4125 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4080 4126 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4081 4127 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4082 4128 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4083 4129 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4084 4130 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4085 4131 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4086 4132 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4087 4133 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4088 4134 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4089 4135 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4090 4136 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4091 4137 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4092 4138 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4093 4139 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4094 4140 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4095 4141 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4127 4472 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4140 4485 2.864343 GTGTGTGTGTACCTCTTGTGAC 59.136 50.000 0.00 0.00 0.00 3.67
4141 4486 2.498078 TGTGTGTGTACCTCTTGTGACA 59.502 45.455 0.00 0.00 0.00 3.58
4678 5030 3.619233 ACGTACTTCCACATTGTTTGC 57.381 42.857 0.00 0.00 0.00 3.68
4746 5101 2.808543 GCATTCTGCCTATTAAGTCCGG 59.191 50.000 0.00 0.00 37.42 5.14
4748 5103 3.814005 TTCTGCCTATTAAGTCCGGAC 57.186 47.619 27.67 27.67 0.00 4.79
4807 5162 4.640771 TTTAGATGGGTCCAGATATGGC 57.359 45.455 0.00 0.00 0.00 4.40
4813 5168 0.034059 GGTCCAGATATGGCGTGGAG 59.966 60.000 0.00 0.00 41.11 3.86
4840 5195 6.870971 TTTGGTCACCTACATGTTTACTTC 57.129 37.500 2.30 0.00 0.00 3.01
4890 5245 4.850680 TCTCAGGTTTAAACACTGTTGGT 58.149 39.130 24.10 0.70 32.55 3.67
5076 5431 4.551702 TGTTGTGTATCTGGCACTATGT 57.448 40.909 0.00 0.00 37.70 2.29
5113 5468 6.294731 GGAATTTGAAGTCATGCTGGTACTTT 60.295 38.462 0.00 0.00 33.72 2.66
5115 5470 6.463995 TTTGAAGTCATGCTGGTACTTTTT 57.536 33.333 0.00 0.00 33.72 1.94
5174 5529 9.144747 CATATATGACCAAAGATCTTTAGGACG 57.855 37.037 28.53 15.66 0.00 4.79
5285 5640 9.005777 TGTTAGGAACTTCATTTACATGGTAAC 57.994 33.333 0.00 0.00 41.75 2.50
5393 5748 4.152223 GCTTGTATTTGGTTGATTGGTTGC 59.848 41.667 0.00 0.00 0.00 4.17
5405 5760 6.073819 GGTTGATTGGTTGCAAAAGTTCATAC 60.074 38.462 0.00 4.63 0.00 2.39
5590 5945 9.276590 GTAGTATTGTTGTTACTGTTTACCCTT 57.723 33.333 0.00 0.00 32.35 3.95
5886 6243 7.995488 GGAGAGATTGATGAATTTAGGAAGGAA 59.005 37.037 0.00 0.00 0.00 3.36
6160 6544 6.864685 TGTCAACTAGAAAATGTACTGTACCG 59.135 38.462 14.91 0.00 0.00 4.02
6296 6680 3.582647 ACCATGACTTCACTGTGGATGTA 59.417 43.478 8.11 0.00 34.13 2.29
6419 6803 7.823745 ACTCTGGACTTGTTTATGTTTGAAT 57.176 32.000 0.00 0.00 0.00 2.57
6420 6804 7.875971 ACTCTGGACTTGTTTATGTTTGAATC 58.124 34.615 0.00 0.00 0.00 2.52
6459 6843 9.683069 ATGTTACTTTCTTTCACATGATTGTTC 57.317 29.630 0.00 0.00 32.34 3.18
6591 6975 7.016957 ACATGATACCTCACATGAGTTCCATAT 59.983 37.037 12.90 0.00 44.28 1.78
6631 7015 6.311200 GCAATTCAACTGGCTTTTAATGTAGG 59.689 38.462 0.00 0.00 0.00 3.18
6708 7092 9.352784 CTGAAACAGAACAAAACAATTTCTACA 57.647 29.630 0.00 0.00 32.44 2.74
6824 7211 8.650143 AAAAAGTCATATTACCACACATTCCT 57.350 30.769 0.00 0.00 0.00 3.36
6879 7266 0.670162 GGTTGCATGTTGCTCTGTGT 59.330 50.000 0.75 0.00 45.31 3.72
6948 7335 5.936956 CACAAGAGCTCTGAAGTTCCTTTAT 59.063 40.000 19.06 0.00 33.49 1.40
6977 7364 5.817816 CAGGGTGGTAATAACATTCACTCTC 59.182 44.000 0.00 0.00 37.09 3.20
7024 7411 5.869579 ACTTTGAAGGAGAATGAAGTGCTA 58.130 37.500 0.00 0.00 0.00 3.49
7124 7511 6.043411 CCTGTAGCTGGAGTTGAGTTATAAC 58.957 44.000 7.57 7.57 0.00 1.89
7237 7626 4.903638 TTCAGAACTTAATCGAAGCGTG 57.096 40.909 0.00 0.00 38.92 5.34
7256 7645 4.786609 GCGTGGCTGCAGATTTAAGTATTC 60.787 45.833 20.43 0.00 34.15 1.75
7430 7819 4.907582 GGTACATGTTCGTTAAACTTGCAC 59.092 41.667 2.30 0.00 43.41 4.57
7686 8075 0.627451 AGGCCAATGAGGATCTTGCA 59.373 50.000 5.01 0.00 41.22 4.08
7755 8144 6.060136 ACAGGTTAGTTTCCTTACCAGTTTC 58.940 40.000 0.00 0.00 41.81 2.78
7758 8147 6.329460 AGGTTAGTTTCCTTACCAGTTTCTCT 59.671 38.462 0.00 0.00 41.81 3.10
7910 8299 4.253685 GGTTTCTCATTGCACTGTAGCTA 58.746 43.478 3.77 0.00 34.99 3.32
7943 8332 3.134127 GCTTGTCGGTGGATGGCC 61.134 66.667 0.00 0.00 0.00 5.36
8023 8414 0.688749 AAATGGGGGAAGAGCATGGC 60.689 55.000 0.00 0.00 0.00 4.40
8175 8568 7.667219 CAGGTATGGATTTGGCTAATTAGTGAT 59.333 37.037 13.91 3.61 0.00 3.06
8301 8694 3.436704 TCGTCAAGCCTGATGATTTTGTC 59.563 43.478 2.98 0.00 41.70 3.18
8437 8831 5.116983 GCAAAGTTTCATGTGGTACATTTCG 59.883 40.000 0.00 0.00 44.52 3.46
8439 8833 6.817765 AAGTTTCATGTGGTACATTTCGAT 57.182 33.333 0.00 0.00 44.52 3.59
8440 8834 6.817765 AGTTTCATGTGGTACATTTCGATT 57.182 33.333 0.00 0.00 44.52 3.34
8443 8837 8.788806 AGTTTCATGTGGTACATTTCGATTTTA 58.211 29.630 0.00 0.00 44.52 1.52
8519 8914 7.867921 TGTGATGGAAACTATAATAACCTGGT 58.132 34.615 0.00 0.00 0.00 4.00
8583 8978 0.249741 CGCGGTGGGTAGATAAAGGG 60.250 60.000 0.00 0.00 0.00 3.95
8645 9040 9.332502 GTGACCCCAAATTTTTATTACTGTTTT 57.667 29.630 0.00 0.00 0.00 2.43
8775 9172 3.632145 AGGATATCGTTTTTGTCCATGGC 59.368 43.478 6.96 2.72 0.00 4.40
8776 9173 3.548014 GGATATCGTTTTTGTCCATGGCG 60.548 47.826 6.96 2.77 0.00 5.69
8777 9174 1.529226 ATCGTTTTTGTCCATGGCGA 58.471 45.000 6.96 8.93 0.00 5.54
8781 9178 2.470999 CGTTTTTGTCCATGGCGAAAAG 59.529 45.455 23.54 17.07 31.97 2.27
8803 9200 0.464373 AGCACATAGGTCATTGCCCG 60.464 55.000 0.00 0.00 35.47 6.13
8848 9249 2.884012 TGTGTTGTTTCCATGCTACCTG 59.116 45.455 0.00 0.00 0.00 4.00
8854 9255 2.672961 TTCCATGCTACCTGAGAACG 57.327 50.000 0.00 0.00 0.00 3.95
8860 9261 0.872021 GCTACCTGAGAACGGATGCG 60.872 60.000 4.58 4.58 0.00 4.73
8908 9309 2.742053 ACAACCTTGATACGTGATGCAC 59.258 45.455 0.00 0.00 0.00 4.57
8969 9371 2.475685 GCTCGGTGAAAAACGAATAGGC 60.476 50.000 0.00 0.00 38.79 3.93
9095 9968 4.217550 ACGAAATGTTTGGACAATGGTAGG 59.782 41.667 0.00 0.00 39.66 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 9.360093 CCTTCTAGTAGATATTTTCGCCAATAG 57.640 37.037 0.00 0.00 0.00 1.73
119 120 2.158204 GGTGGCCCCCTTCTAGTAGATA 60.158 54.545 0.00 0.00 0.00 1.98
142 143 1.067516 CCACCTGAGCTTGTGGTTTTG 59.932 52.381 18.07 3.82 45.61 2.44
169 170 4.710695 CTCACGTGGCGCACCGTA 62.711 66.667 20.70 10.33 39.70 4.02
173 174 4.374702 CAAGCTCACGTGGCGCAC 62.375 66.667 25.15 4.68 34.52 5.34
175 176 4.374702 CACAAGCTCACGTGGCGC 62.375 66.667 17.00 18.10 34.52 6.53
182 186 3.513750 AAGGGGCCCACAAGCTCAC 62.514 63.158 27.72 1.71 33.67 3.51
196 200 0.958876 GGTAAACGGAGCACCAAGGG 60.959 60.000 0.00 0.00 35.59 3.95
200 204 0.609662 GTAGGGTAAACGGAGCACCA 59.390 55.000 0.00 0.00 33.78 4.17
237 241 3.132139 CGGAGCTCGGGAAGACGA 61.132 66.667 13.25 0.00 41.13 4.20
238 242 2.488087 AAACGGAGCTCGGGAAGACG 62.488 60.000 23.45 14.28 44.45 4.18
246 250 3.423154 GGTGGCAAACGGAGCTCG 61.423 66.667 7.83 5.83 45.88 5.03
247 251 1.648467 GATGGTGGCAAACGGAGCTC 61.648 60.000 4.71 4.71 0.00 4.09
309 313 1.067199 GATTTGTTGCCTCGCGCTTG 61.067 55.000 5.56 0.00 38.78 4.01
311 315 2.690778 GGATTTGTTGCCTCGCGCT 61.691 57.895 5.56 0.00 38.78 5.92
312 316 2.202479 GGATTTGTTGCCTCGCGC 60.202 61.111 0.00 0.00 38.31 6.86
313 317 1.425428 GAGGATTTGTTGCCTCGCG 59.575 57.895 0.00 0.00 41.10 5.87
316 320 1.803289 GGCGAGGATTTGTTGCCTC 59.197 57.895 0.00 0.00 45.73 4.70
347 351 4.164294 CCGTTAGCTATTACGCATCTACC 58.836 47.826 11.64 0.00 36.49 3.18
357 361 1.884579 CGAGGAGGCCGTTAGCTATTA 59.115 52.381 0.00 0.00 43.05 0.98
383 387 2.060980 CCTTCCTCCCTCTCCACCG 61.061 68.421 0.00 0.00 0.00 4.94
386 390 0.043334 CCTTCCTTCCTCCCTCTCCA 59.957 60.000 0.00 0.00 0.00 3.86
398 402 1.359130 CCACCATTTCTCCCCTTCCTT 59.641 52.381 0.00 0.00 0.00 3.36
401 405 1.616994 CCACCACCATTTCTCCCCTTC 60.617 57.143 0.00 0.00 0.00 3.46
402 406 0.409484 CCACCACCATTTCTCCCCTT 59.591 55.000 0.00 0.00 0.00 3.95
408 412 1.847798 TAGCCGCCACCACCATTTCT 61.848 55.000 0.00 0.00 0.00 2.52
444 448 2.507944 GCCCCTCTCATGCGACAT 59.492 61.111 0.00 0.00 0.00 3.06
452 456 3.062466 CTCGTGTCGCCCCTCTCA 61.062 66.667 0.00 0.00 0.00 3.27
455 459 4.500116 GCTCTCGTGTCGCCCCTC 62.500 72.222 0.00 0.00 0.00 4.30
473 477 1.358152 CAAGAACACCACTCCCCCTA 58.642 55.000 0.00 0.00 0.00 3.53
491 495 5.606348 AAAAGGTTGAATAAAGTGGCACA 57.394 34.783 21.41 0.00 0.00 4.57
552 556 6.092807 GGTCAACTGAAATTCGCTTAGAGATT 59.907 38.462 0.00 0.00 0.00 2.40
553 557 5.582665 GGTCAACTGAAATTCGCTTAGAGAT 59.417 40.000 0.00 0.00 0.00 2.75
559 564 4.520492 AGAATGGTCAACTGAAATTCGCTT 59.480 37.500 9.22 0.00 35.86 4.68
585 590 5.303971 ACTTGTTCATCTCACCTCTTTCTG 58.696 41.667 0.00 0.00 0.00 3.02
605 610 2.922283 AGGGATGGAGTGAAATGGACTT 59.078 45.455 0.00 0.00 0.00 3.01
607 612 2.239654 TGAGGGATGGAGTGAAATGGAC 59.760 50.000 0.00 0.00 0.00 4.02
615 620 1.630369 TCTGGTTTGAGGGATGGAGTG 59.370 52.381 0.00 0.00 0.00 3.51
616 621 1.630878 GTCTGGTTTGAGGGATGGAGT 59.369 52.381 0.00 0.00 0.00 3.85
617 622 1.630369 TGTCTGGTTTGAGGGATGGAG 59.370 52.381 0.00 0.00 0.00 3.86
618 623 1.351017 GTGTCTGGTTTGAGGGATGGA 59.649 52.381 0.00 0.00 0.00 3.41
619 624 1.073763 TGTGTCTGGTTTGAGGGATGG 59.926 52.381 0.00 0.00 0.00 3.51
620 625 2.566833 TGTGTCTGGTTTGAGGGATG 57.433 50.000 0.00 0.00 0.00 3.51
621 626 3.593442 TTTGTGTCTGGTTTGAGGGAT 57.407 42.857 0.00 0.00 0.00 3.85
622 627 3.374042 TTTTGTGTCTGGTTTGAGGGA 57.626 42.857 0.00 0.00 0.00 4.20
623 628 4.670896 ATTTTTGTGTCTGGTTTGAGGG 57.329 40.909 0.00 0.00 0.00 4.30
624 629 6.348621 CAAATTTTTGTGTCTGGTTTGAGG 57.651 37.500 0.00 0.00 33.59 3.86
644 649 2.350964 GGCGAAACGAAATGGCTACAAA 60.351 45.455 0.00 0.00 0.00 2.83
650 655 2.864589 TCGGCGAAACGAAATGGC 59.135 55.556 7.35 0.00 40.34 4.40
657 662 1.124462 TGCAAAAATTCGGCGAAACG 58.876 45.000 27.40 13.61 0.00 3.60
658 663 3.060230 GGTATGCAAAAATTCGGCGAAAC 59.940 43.478 27.40 15.77 0.00 2.78
661 666 1.813178 TGGTATGCAAAAATTCGGCGA 59.187 42.857 4.99 4.99 0.00 5.54
663 668 3.743396 TGTTTGGTATGCAAAAATTCGGC 59.257 39.130 0.00 0.00 0.00 5.54
687 692 0.462047 AATGGGTCGATTCCGTGCTC 60.462 55.000 3.67 0.00 37.05 4.26
749 754 8.519799 TTTGAGACAGAGAAAGTATTTGGTTT 57.480 30.769 0.00 0.00 39.27 3.27
760 765 9.706691 ACGTTCTTATATTTTGAGACAGAGAAA 57.293 29.630 0.00 0.00 0.00 2.52
761 766 9.706691 AACGTTCTTATATTTTGAGACAGAGAA 57.293 29.630 0.00 0.00 0.00 2.87
762 767 9.706691 AAACGTTCTTATATTTTGAGACAGAGA 57.293 29.630 0.00 0.00 0.00 3.10
810 815 9.284968 CCTCCGTTCCATAATATAAGAACATTT 57.715 33.333 12.74 0.00 38.80 2.32
811 816 7.883311 CCCTCCGTTCCATAATATAAGAACATT 59.117 37.037 12.74 0.00 38.80 2.71
812 817 7.236847 TCCCTCCGTTCCATAATATAAGAACAT 59.763 37.037 12.74 0.00 38.80 2.71
813 818 6.555738 TCCCTCCGTTCCATAATATAAGAACA 59.444 38.462 12.74 0.00 38.80 3.18
814 819 7.001099 TCCCTCCGTTCCATAATATAAGAAC 57.999 40.000 5.67 5.67 36.19 3.01
815 820 6.785963 ACTCCCTCCGTTCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
816 821 6.320518 ACTCCCTCCGTTCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
817 822 6.607004 ACTCCCTCCGTTCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
818 823 7.011994 TGTACTCCCTCCGTTCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
819 824 6.554784 TGTACTCCCTCCGTTCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
820 825 5.399991 TGTACTCCCTCCGTTCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
821 826 4.806892 TGTACTCCCTCCGTTCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
822 827 3.649843 TGTACTCCCTCCGTTCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
823 828 3.104519 TGTACTCCCTCCGTTCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
824 829 2.832643 TGTACTCCCTCCGTTCCATA 57.167 50.000 0.00 0.00 0.00 2.74
825 830 2.040178 GATGTACTCCCTCCGTTCCAT 58.960 52.381 0.00 0.00 0.00 3.41
826 831 1.481871 GATGTACTCCCTCCGTTCCA 58.518 55.000 0.00 0.00 0.00 3.53
827 832 0.751452 GGATGTACTCCCTCCGTTCC 59.249 60.000 0.00 0.00 38.19 3.62
828 833 1.777941 AGGATGTACTCCCTCCGTTC 58.222 55.000 7.50 0.00 46.27 3.95
829 834 3.393426 TTAGGATGTACTCCCTCCGTT 57.607 47.619 9.41 0.00 46.27 4.44
830 835 3.498334 GATTAGGATGTACTCCCTCCGT 58.502 50.000 9.41 0.00 46.27 4.69
831 836 2.488545 CGATTAGGATGTACTCCCTCCG 59.511 54.545 9.41 8.61 46.27 4.63
832 837 3.764218 TCGATTAGGATGTACTCCCTCC 58.236 50.000 9.41 3.69 46.27 4.30
833 838 5.477291 TGATTCGATTAGGATGTACTCCCTC 59.523 44.000 9.41 4.05 46.27 4.30
834 839 5.244178 GTGATTCGATTAGGATGTACTCCCT 59.756 44.000 10.65 10.65 46.27 4.20
835 840 5.471257 GTGATTCGATTAGGATGTACTCCC 58.529 45.833 7.50 2.60 46.27 4.30
836 841 5.010719 TGGTGATTCGATTAGGATGTACTCC 59.989 44.000 0.00 0.00 45.33 3.85
837 842 6.085555 TGGTGATTCGATTAGGATGTACTC 57.914 41.667 0.00 0.00 0.00 2.59
838 843 6.098409 ACTTGGTGATTCGATTAGGATGTACT 59.902 38.462 0.00 0.00 0.00 2.73
839 844 6.201044 CACTTGGTGATTCGATTAGGATGTAC 59.799 42.308 0.00 0.00 35.23 2.90
840 845 6.280643 CACTTGGTGATTCGATTAGGATGTA 58.719 40.000 0.00 0.00 35.23 2.29
841 846 5.118990 CACTTGGTGATTCGATTAGGATGT 58.881 41.667 0.00 0.00 35.23 3.06
842 847 4.024556 GCACTTGGTGATTCGATTAGGATG 60.025 45.833 1.57 0.00 35.23 3.51
843 848 4.130118 GCACTTGGTGATTCGATTAGGAT 58.870 43.478 1.57 0.00 35.23 3.24
844 849 3.055458 TGCACTTGGTGATTCGATTAGGA 60.055 43.478 1.57 0.00 35.23 2.94
912 917 2.092882 GCGAGTAACTCCGTGTGCC 61.093 63.158 0.00 0.00 0.00 5.01
950 959 0.107848 ATTTTACCCGGTCTCGCCAG 60.108 55.000 0.00 0.00 36.97 4.85
952 961 1.012086 GAATTTTACCCGGTCTCGCC 58.988 55.000 0.00 0.00 34.56 5.54
1180 1194 2.391724 AAACAGAAGCTTCGGGCCGA 62.392 55.000 27.46 27.46 43.05 5.54
1493 1507 9.538508 TGATGATAAGATGACTGTTCAACTATG 57.461 33.333 0.00 0.00 33.90 2.23
1524 1541 2.446848 GCAGGGAGCAGGGCATCTA 61.447 63.158 0.00 0.00 44.79 1.98
1535 1552 2.819477 CTCAGTAGGGAGCAGGGAG 58.181 63.158 0.00 0.00 0.00 4.30
1563 1580 5.005203 GCATCAAGAGTCAGAGTATTTCGTG 59.995 44.000 0.00 0.00 0.00 4.35
1580 1597 7.856145 ATTCTAAGGAACACTAAGCATCAAG 57.144 36.000 0.00 0.00 33.96 3.02
1588 1605 7.390823 TGTGCACATATTCTAAGGAACACTAA 58.609 34.615 17.42 0.00 33.96 2.24
1621 1645 0.529337 CGCTATCAGCTGGTCAGTGG 60.529 60.000 15.13 2.14 39.60 4.00
1622 1646 0.174389 ACGCTATCAGCTGGTCAGTG 59.826 55.000 15.13 16.26 39.60 3.66
1623 1647 0.174389 CACGCTATCAGCTGGTCAGT 59.826 55.000 15.13 4.94 39.60 3.41
1624 1648 0.457443 TCACGCTATCAGCTGGTCAG 59.543 55.000 15.13 9.63 39.60 3.51
1625 1649 1.114627 ATCACGCTATCAGCTGGTCA 58.885 50.000 15.13 0.00 39.60 4.02
1626 1650 2.231215 AATCACGCTATCAGCTGGTC 57.769 50.000 15.13 0.00 39.60 4.02
1627 1651 2.555199 GAAATCACGCTATCAGCTGGT 58.445 47.619 15.13 9.93 39.60 4.00
1691 1716 0.533755 AATCGCTGCATAGGTCAGGC 60.534 55.000 0.00 0.00 32.41 4.85
1705 1730 0.457035 ATGGTTGCCACATCAATCGC 59.543 50.000 0.00 0.00 35.80 4.58
1715 1740 4.040217 ACTTTGCAATAAAGATGGTTGCCA 59.960 37.500 0.00 0.00 45.66 4.92
1716 1741 4.568956 ACTTTGCAATAAAGATGGTTGCC 58.431 39.130 0.00 0.00 45.66 4.52
1765 1791 8.997323 TGATCTTTCTGAATCTGTCTTTCTTTC 58.003 33.333 0.00 0.00 0.00 2.62
1818 1844 1.004745 ACTAGTAAACCCGGACGGAGA 59.995 52.381 13.13 0.00 37.50 3.71
1957 1983 6.639632 AGAAAAGTGTTAATGCATGTCACT 57.360 33.333 19.18 19.18 40.40 3.41
1974 2000 9.612620 GTTTGACCACATATTTGACTAGAAAAG 57.387 33.333 0.00 0.00 0.00 2.27
2016 2044 4.124970 GTCCGGGTTTATTAGTCACCATC 58.875 47.826 0.00 0.00 31.50 3.51
2017 2045 3.431207 CGTCCGGGTTTATTAGTCACCAT 60.431 47.826 0.00 0.00 31.50 3.55
2038 2066 2.165641 TGCATCAGTTGTACTACCTCCG 59.834 50.000 3.72 0.00 0.00 4.63
2068 2098 0.253044 TGTCCTGGTCCAGCAATAGC 59.747 55.000 13.99 0.24 42.56 2.97
2211 2245 2.025155 GCGTGGGATTCTCTAGTCTCA 58.975 52.381 0.00 0.00 0.00 3.27
2241 2275 2.671396 CCGAATGTGGTGCTTACTACAC 59.329 50.000 0.00 0.00 34.03 2.90
2244 2278 3.592059 GAACCGAATGTGGTGCTTACTA 58.408 45.455 0.00 0.00 42.89 1.82
2275 2309 1.406539 CCTGCAGGTTATTCATGTGGC 59.593 52.381 25.53 0.00 0.00 5.01
2397 2439 7.098477 TCTTGAATATGTTTGGAAATTGGCTG 58.902 34.615 0.00 0.00 0.00 4.85
2470 2512 3.827898 CCCCTCCGCTCGTCTCAC 61.828 72.222 0.00 0.00 0.00 3.51
2510 2552 1.696832 GCAGCGATCAGGACGAAACC 61.697 60.000 0.00 0.00 0.00 3.27
2527 2569 0.805322 CAACAAAAAGTGCTGCCGCA 60.805 50.000 0.00 0.00 45.60 5.69
2528 2570 1.926490 CAACAAAAAGTGCTGCCGC 59.074 52.632 0.00 0.00 0.00 6.53
2562 2604 3.694072 TGAATAAAAGACAATCGGGCCAG 59.306 43.478 4.39 0.00 0.00 4.85
2568 2610 8.618952 GTTCGAAGTTTGAATAAAAGACAATCG 58.381 33.333 8.80 0.00 0.00 3.34
2726 2768 7.388776 CAGATACCAACTCTCAAAACAAGATGA 59.611 37.037 0.00 0.00 0.00 2.92
2852 2896 1.745890 CACGTGACCCCAGAAGACA 59.254 57.895 10.90 0.00 0.00 3.41
3074 3118 4.527944 ACTGGGCTATTAAAGAGAAAGGC 58.472 43.478 0.00 0.00 0.00 4.35
3234 3278 8.457238 AAGATATTAGGAAATCTGAAAGTGCC 57.543 34.615 0.00 0.00 32.79 5.01
3510 3554 9.322769 GACTTATATTTAGGAATGGAGGGAGTA 57.677 37.037 0.00 0.00 0.00 2.59
3511 3555 8.019652 AGACTTATATTTAGGAATGGAGGGAGT 58.980 37.037 0.00 0.00 0.00 3.85
3512 3556 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
3513 3557 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
3514 3558 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
3591 3635 5.285607 CGGAGTAAAACGAGTGAATCTACAC 59.714 44.000 0.00 0.00 40.60 2.90
3592 3636 5.048504 ACGGAGTAAAACGAGTGAATCTACA 60.049 40.000 0.00 0.00 41.94 2.74
3593 3637 5.397326 ACGGAGTAAAACGAGTGAATCTAC 58.603 41.667 0.00 0.00 41.94 2.59
3594 3638 5.633830 ACGGAGTAAAACGAGTGAATCTA 57.366 39.130 0.00 0.00 41.94 1.98
3595 3639 4.516365 ACGGAGTAAAACGAGTGAATCT 57.484 40.909 0.00 0.00 41.94 2.40
3611 3655 2.096980 TCAACGCAGACTACATACGGAG 59.903 50.000 0.00 0.00 0.00 4.63
3612 3656 2.086094 TCAACGCAGACTACATACGGA 58.914 47.619 0.00 0.00 0.00 4.69
3613 3657 2.554806 TCAACGCAGACTACATACGG 57.445 50.000 0.00 0.00 0.00 4.02
3614 3658 4.798907 AGATTTCAACGCAGACTACATACG 59.201 41.667 0.00 0.00 0.00 3.06
3615 3659 6.037098 AGAGATTTCAACGCAGACTACATAC 58.963 40.000 0.00 0.00 0.00 2.39
3616 3660 6.208988 AGAGATTTCAACGCAGACTACATA 57.791 37.500 0.00 0.00 0.00 2.29
3617 3661 5.078411 AGAGATTTCAACGCAGACTACAT 57.922 39.130 0.00 0.00 0.00 2.29
3618 3662 4.521130 AGAGATTTCAACGCAGACTACA 57.479 40.909 0.00 0.00 0.00 2.74
3619 3663 6.946229 TTTAGAGATTTCAACGCAGACTAC 57.054 37.500 0.00 0.00 0.00 2.73
3620 3664 7.870954 TCTTTTTAGAGATTTCAACGCAGACTA 59.129 33.333 0.00 0.00 0.00 2.59
3621 3665 6.706270 TCTTTTTAGAGATTTCAACGCAGACT 59.294 34.615 0.00 0.00 0.00 3.24
3622 3666 6.792726 GTCTTTTTAGAGATTTCAACGCAGAC 59.207 38.462 0.00 0.00 0.00 3.51
3623 3667 6.706270 AGTCTTTTTAGAGATTTCAACGCAGA 59.294 34.615 0.00 0.00 0.00 4.26
3624 3668 6.892691 AGTCTTTTTAGAGATTTCAACGCAG 58.107 36.000 0.00 0.00 0.00 5.18
3625 3669 6.861065 AGTCTTTTTAGAGATTTCAACGCA 57.139 33.333 0.00 0.00 0.00 5.24
3641 3685 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
3642 3686 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
3643 3687 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
3644 3688 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3645 3689 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3646 3690 9.860393 ATACTCCCTCCATTCCTAAATATAAGT 57.140 33.333 0.00 0.00 0.00 2.24
3651 3695 9.629649 ACATAATACTCCCTCCATTCCTAAATA 57.370 33.333 0.00 0.00 0.00 1.40
3652 3696 8.525729 ACATAATACTCCCTCCATTCCTAAAT 57.474 34.615 0.00 0.00 0.00 1.40
3653 3697 7.947782 ACATAATACTCCCTCCATTCCTAAA 57.052 36.000 0.00 0.00 0.00 1.85
3654 3698 7.794683 AGAACATAATACTCCCTCCATTCCTAA 59.205 37.037 0.00 0.00 0.00 2.69
3655 3699 7.235606 CAGAACATAATACTCCCTCCATTCCTA 59.764 40.741 0.00 0.00 0.00 2.94
3656 3700 6.043706 CAGAACATAATACTCCCTCCATTCCT 59.956 42.308 0.00 0.00 0.00 3.36
3657 3701 6.043243 TCAGAACATAATACTCCCTCCATTCC 59.957 42.308 0.00 0.00 0.00 3.01
3658 3702 7.067496 TCAGAACATAATACTCCCTCCATTC 57.933 40.000 0.00 0.00 0.00 2.67
3659 3703 7.639062 ATCAGAACATAATACTCCCTCCATT 57.361 36.000 0.00 0.00 0.00 3.16
3660 3704 7.639062 AATCAGAACATAATACTCCCTCCAT 57.361 36.000 0.00 0.00 0.00 3.41
3661 3705 7.451731 AAATCAGAACATAATACTCCCTCCA 57.548 36.000 0.00 0.00 0.00 3.86
3662 3706 7.775561 ACAAAATCAGAACATAATACTCCCTCC 59.224 37.037 0.00 0.00 0.00 4.30
3663 3707 8.616076 CACAAAATCAGAACATAATACTCCCTC 58.384 37.037 0.00 0.00 0.00 4.30
3664 3708 7.067494 GCACAAAATCAGAACATAATACTCCCT 59.933 37.037 0.00 0.00 0.00 4.20
3665 3709 7.067494 AGCACAAAATCAGAACATAATACTCCC 59.933 37.037 0.00 0.00 0.00 4.30
3666 3710 7.989826 AGCACAAAATCAGAACATAATACTCC 58.010 34.615 0.00 0.00 0.00 3.85
3667 3711 8.887717 AGAGCACAAAATCAGAACATAATACTC 58.112 33.333 0.00 0.00 0.00 2.59
3668 3712 8.671921 CAGAGCACAAAATCAGAACATAATACT 58.328 33.333 0.00 0.00 0.00 2.12
3669 3713 8.668353 TCAGAGCACAAAATCAGAACATAATAC 58.332 33.333 0.00 0.00 0.00 1.89
3711 3755 7.321745 AGTCATAGTAAGTAATTGCAAAGCC 57.678 36.000 1.71 0.00 0.00 4.35
3746 3790 0.178995 TCATGCAACACTGGCCAGAA 60.179 50.000 39.19 16.29 0.00 3.02
3856 3901 5.473039 GTCAGGTTTGCTGCTAATGAAATT 58.527 37.500 0.00 0.00 41.28 1.82
3991 4037 5.790593 AGCTTCTGAATACCTACGTTTTCA 58.209 37.500 0.00 0.00 37.53 2.69
4069 4115 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4070 4116 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
4071 4117 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
4073 4119 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
4075 4121 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
4076 4122 4.403752 CACAGAGAGAGAGAGAGAGAGAGA 59.596 50.000 0.00 0.00 0.00 3.10
4077 4123 4.161189 ACACAGAGAGAGAGAGAGAGAGAG 59.839 50.000 0.00 0.00 0.00 3.20
4078 4124 4.081476 CACACAGAGAGAGAGAGAGAGAGA 60.081 50.000 0.00 0.00 0.00 3.10
4079 4125 4.186926 CACACAGAGAGAGAGAGAGAGAG 58.813 52.174 0.00 0.00 0.00 3.20
4080 4126 3.582647 ACACACAGAGAGAGAGAGAGAGA 59.417 47.826 0.00 0.00 0.00 3.10
4081 4127 3.686241 CACACACAGAGAGAGAGAGAGAG 59.314 52.174 0.00 0.00 0.00 3.20
4082 4128 3.072330 ACACACACAGAGAGAGAGAGAGA 59.928 47.826 0.00 0.00 0.00 3.10
4083 4129 3.189080 CACACACACAGAGAGAGAGAGAG 59.811 52.174 0.00 0.00 0.00 3.20
4084 4130 3.145286 CACACACACAGAGAGAGAGAGA 58.855 50.000 0.00 0.00 0.00 3.10
4085 4131 2.884012 ACACACACACAGAGAGAGAGAG 59.116 50.000 0.00 0.00 0.00 3.20
4086 4132 2.620585 CACACACACACAGAGAGAGAGA 59.379 50.000 0.00 0.00 0.00 3.10
4087 4133 2.360483 ACACACACACACAGAGAGAGAG 59.640 50.000 0.00 0.00 0.00 3.20
4088 4134 2.099756 CACACACACACACAGAGAGAGA 59.900 50.000 0.00 0.00 0.00 3.10
4089 4135 2.159184 ACACACACACACACAGAGAGAG 60.159 50.000 0.00 0.00 0.00 3.20
4090 4136 1.824852 ACACACACACACACAGAGAGA 59.175 47.619 0.00 0.00 0.00 3.10
4091 4137 1.929169 CACACACACACACACAGAGAG 59.071 52.381 0.00 0.00 0.00 3.20
4092 4138 1.275010 ACACACACACACACACAGAGA 59.725 47.619 0.00 0.00 0.00 3.10
4093 4139 1.394572 CACACACACACACACACAGAG 59.605 52.381 0.00 0.00 0.00 3.35
4094 4140 1.270571 ACACACACACACACACACAGA 60.271 47.619 0.00 0.00 0.00 3.41
4095 4141 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
4127 4472 4.935205 TGCATGTTATGTCACAAGAGGTAC 59.065 41.667 0.00 0.00 0.00 3.34
4500 4852 5.396362 CGATTCAAACACAATGTCAACTGTC 59.604 40.000 0.00 0.00 0.00 3.51
4807 5162 0.240945 GGTGACCAAATTGCTCCACG 59.759 55.000 0.00 0.00 0.00 4.94
4813 5168 4.519540 AACATGTAGGTGACCAAATTGC 57.480 40.909 3.63 0.00 0.00 3.56
4821 5176 7.506328 AAAAGGAAGTAAACATGTAGGTGAC 57.494 36.000 0.00 0.00 0.00 3.67
4840 5195 8.574196 AACGAAAACAGATACATTGAAAAAGG 57.426 30.769 0.00 0.00 0.00 3.11
5113 5468 7.016153 AGTTCTGTGGTTATCACCTCATAAA 57.984 36.000 1.46 0.00 43.98 1.40
5115 5470 5.958380 AGAGTTCTGTGGTTATCACCTCATA 59.042 40.000 1.46 0.00 43.98 2.15
5174 5529 9.744468 AAAACATACTTCACAATTCAACCTAAC 57.256 29.630 0.00 0.00 0.00 2.34
5285 5640 0.180406 ATCCCTCGTTCCCAAATCCG 59.820 55.000 0.00 0.00 0.00 4.18
5338 5693 3.055094 TGGATAGCCAAAAGAGACACCTC 60.055 47.826 0.00 0.00 42.49 3.85
5393 5748 7.935338 ACAAGCAATGAAGTATGAACTTTTG 57.065 32.000 0.00 0.00 46.09 2.44
5405 5760 3.243636 ACTCAGCCAAACAAGCAATGAAG 60.244 43.478 0.00 0.00 0.00 3.02
5590 5945 7.603651 ACACACCACAATACTTTTAACAAACA 58.396 30.769 0.00 0.00 0.00 2.83
5886 6243 6.585416 AGGCAAACAATGAGAAATCAACTTT 58.415 32.000 0.00 0.00 0.00 2.66
5937 6294 5.784303 TTACAATCTGTACCCAACCGTGGA 61.784 45.833 0.00 0.00 45.60 4.02
6002 6359 7.620880 ACAGAAAGGCTATCAACAAGTATACA 58.379 34.615 5.50 0.00 0.00 2.29
6139 6523 6.985117 TCACGGTACAGTACATTTTCTAGTT 58.015 36.000 12.89 0.00 0.00 2.24
6160 6544 3.678548 GGGTGTACGTCTTGAGATTTCAC 59.321 47.826 0.00 0.00 31.71 3.18
6419 6803 9.502091 AAGAAAGTAACATACATAAAGCACAGA 57.498 29.630 0.00 0.00 0.00 3.41
6479 6863 5.237344 GCAACAAGACTACAGAACAATGACT 59.763 40.000 0.00 0.00 0.00 3.41
6532 6916 9.053840 CATTATCTATTCAATGCAGTGAGAGTT 57.946 33.333 17.22 14.66 0.00 3.01
6654 7038 0.401738 CCACCTTTTCAGCTCCCTGA 59.598 55.000 0.00 0.00 46.03 3.86
6799 7186 8.650143 AGGAATGTGTGGTAATATGACTTTTT 57.350 30.769 0.00 0.00 0.00 1.94
6800 7187 9.747898 TTAGGAATGTGTGGTAATATGACTTTT 57.252 29.630 0.00 0.00 0.00 2.27
6801 7188 9.747898 TTTAGGAATGTGTGGTAATATGACTTT 57.252 29.630 0.00 0.00 0.00 2.66
6802 7189 9.747898 TTTTAGGAATGTGTGGTAATATGACTT 57.252 29.630 0.00 0.00 0.00 3.01
6803 7190 9.747898 TTTTTAGGAATGTGTGGTAATATGACT 57.252 29.630 0.00 0.00 0.00 3.41
6879 7266 8.653191 TGGGAACTAATAGTTTCTGAAGTACAA 58.347 33.333 10.94 0.00 38.80 2.41
6948 7335 7.507616 AGTGAATGTTATTACCACCCTGAAAAA 59.492 33.333 0.00 0.00 0.00 1.94
6977 7364 1.139058 AGCTATTGCAGTTACCCCTCG 59.861 52.381 1.12 0.00 42.74 4.63
7024 7411 9.733556 TGGATGATATGTTTACTTACTGTTGTT 57.266 29.630 0.00 0.00 0.00 2.83
7124 7511 1.307647 CCCCTCTGGTCCAATTGGG 59.692 63.158 24.29 8.35 35.41 4.12
7237 7626 9.670719 GATTAAAGAATACTTAAATCTGCAGCC 57.329 33.333 9.47 0.00 35.05 4.85
7256 7645 3.064545 CGGCTGAAGAGGCAAGATTAAAG 59.935 47.826 0.00 0.00 45.23 1.85
7430 7819 6.427853 TCAAAAAGGATGGATCATATAGCACG 59.572 38.462 0.00 0.00 0.00 5.34
7686 8075 3.801698 AGCGAGCATTAATGATGTGACT 58.198 40.909 19.73 5.23 38.07 3.41
7755 8144 4.789012 AAATGTGCCACCATAAACAGAG 57.211 40.909 0.00 0.00 0.00 3.35
7758 8147 6.412362 ACTTTAAATGTGCCACCATAAACA 57.588 33.333 0.00 0.00 0.00 2.83
7910 8299 2.501723 ACAAGCTGAACCATCGGATAGT 59.498 45.455 0.00 0.00 33.44 2.12
8038 8429 7.704899 ACAGTCAAGTAGTTTACCAAAATTTGC 59.295 33.333 0.00 0.00 0.00 3.68
8301 8694 2.497273 GTTTTTCCCAGATGACCCCATG 59.503 50.000 0.00 0.00 32.09 3.66
8564 8959 0.249741 CCCTTTATCTACCCACCGCG 60.250 60.000 0.00 0.00 0.00 6.46
8566 8961 2.102588 CTCACCCTTTATCTACCCACCG 59.897 54.545 0.00 0.00 0.00 4.94
8583 8978 4.333926 GTCCAAGAAGTGATATTGCCTCAC 59.666 45.833 0.00 0.00 42.68 3.51
8674 9069 2.402564 TGGTTCCAAGGGCAAAAATGA 58.597 42.857 0.00 0.00 0.00 2.57
8746 9142 5.160607 ACAAAAACGATATCCTGTCCTCA 57.839 39.130 0.00 0.00 0.00 3.86
8775 9172 6.250819 CAATGACCTATGTGCTTACTTTTCG 58.749 40.000 0.00 0.00 0.00 3.46
8776 9173 6.030228 GCAATGACCTATGTGCTTACTTTTC 58.970 40.000 0.00 0.00 34.13 2.29
8777 9174 5.105756 GGCAATGACCTATGTGCTTACTTTT 60.106 40.000 0.00 0.00 37.17 2.27
8781 9178 2.618709 GGGCAATGACCTATGTGCTTAC 59.381 50.000 0.00 0.00 37.17 2.34
8803 9200 6.268825 TGTGGAAGTAACAGATACTCTCAC 57.731 41.667 12.60 12.60 44.22 3.51
8818 9219 3.360867 TGGAAACAACACATGTGGAAGT 58.639 40.909 28.64 19.86 42.99 3.01
8854 9255 7.303634 TCAAGAACTTTTAGATTACGCATCC 57.696 36.000 0.00 0.00 31.20 3.51
8921 9322 2.438868 AAAAGCCGGTCTTGAATTGC 57.561 45.000 1.90 0.00 34.67 3.56
8961 9363 4.019919 CACAGTTGGATTTGCCTATTCG 57.980 45.455 0.00 0.00 37.63 3.34
9022 9444 9.603921 ACAAGAAAAATGACAAATCAGAATGTT 57.396 25.926 0.00 0.00 38.57 2.71
9069 9942 5.423886 ACCATTGTCCAAACATTTCGTTTT 58.576 33.333 0.00 0.00 45.79 2.43
9106 9979 1.576577 ATCAGTGCCCATCTCTCACA 58.423 50.000 0.00 0.00 33.44 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.