Multiple sequence alignment - TraesCS7A01G193900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G193900 chr7A 100.000 3391 0 0 1 3391 151873088 151876478 0.000000e+00 6263.0
1 TraesCS7A01G193900 chr7A 89.147 1078 98 6 1231 2289 151961526 151960449 0.000000e+00 1325.0
2 TraesCS7A01G193900 chr7A 88.476 1076 102 11 1231 2298 152507171 152508232 0.000000e+00 1280.0
3 TraesCS7A01G193900 chr7A 79.487 195 30 6 1040 1232 722566674 722566488 2.750000e-26 130.0
4 TraesCS7A01G193900 chr7A 100.000 28 0 0 34 61 152084407 152084434 6.000000e-03 52.8
5 TraesCS7A01G193900 chr7B 87.622 1228 117 19 1231 2435 113539808 113538593 0.000000e+00 1393.0
6 TraesCS7A01G193900 chr7B 89.706 1088 88 8 1231 2298 113802807 113801724 0.000000e+00 1367.0
7 TraesCS7A01G193900 chr7B 90.037 1074 62 10 181 1229 616619410 616620463 0.000000e+00 1349.0
8 TraesCS7A01G193900 chr7B 86.715 1242 114 23 1231 2435 113528462 113527235 0.000000e+00 1332.0
9 TraesCS7A01G193900 chr7B 89.337 1041 94 8 1231 2255 113922579 113923618 0.000000e+00 1291.0
10 TraesCS7A01G193900 chr7B 79.870 1073 172 29 1240 2276 154161928 154160864 0.000000e+00 745.0
11 TraesCS7A01G193900 chr7B 83.432 169 20 4 1067 1234 747766327 747766166 2.110000e-32 150.0
12 TraesCS7A01G193900 chr7D 89.674 1075 95 5 1231 2289 151916941 151915867 0.000000e+00 1356.0
13 TraesCS7A01G193900 chr7D 89.681 1066 97 7 1231 2289 151791427 151790368 0.000000e+00 1347.0
14 TraesCS7A01G193900 chr7D 87.796 1098 100 14 1231 2305 152087007 152088093 0.000000e+00 1254.0
15 TraesCS7A01G193900 chr7D 89.115 983 85 8 1469 2435 151779210 151778234 0.000000e+00 1203.0
16 TraesCS7A01G193900 chr7D 79.981 1069 174 26 1240 2276 184574597 184573537 0.000000e+00 752.0
17 TraesCS7A01G193900 chr7D 80.243 987 152 34 2434 3386 111620409 111621386 0.000000e+00 702.0
18 TraesCS7A01G193900 chr7D 83.465 254 37 5 181 430 140294273 140294021 7.320000e-57 231.0
19 TraesCS7A01G193900 chr7D 85.535 159 17 2 1080 1238 117858627 117858475 9.740000e-36 161.0
20 TraesCS7A01G193900 chr7D 97.500 40 1 0 33 72 151779585 151779546 6.070000e-08 69.4
21 TraesCS7A01G193900 chrUn 87.591 1096 114 8 1231 2305 185555805 185554711 0.000000e+00 1251.0
22 TraesCS7A01G193900 chrUn 87.706 1090 112 8 1231 2298 235702579 235701490 0.000000e+00 1251.0
23 TraesCS7A01G193900 chrUn 87.615 1090 113 8 1231 2298 85701103 85702192 0.000000e+00 1245.0
24 TraesCS7A01G193900 chrUn 88.095 924 89 7 1231 2133 85624484 85625407 0.000000e+00 1077.0
25 TraesCS7A01G193900 chrUn 85.239 691 92 7 2671 3354 294622135 294621448 0.000000e+00 702.0
26 TraesCS7A01G193900 chr1B 85.223 1076 132 14 1231 2289 596248562 596247497 0.000000e+00 1081.0
27 TraesCS7A01G193900 chr1B 83.676 729 101 9 2666 3386 145347709 145346991 0.000000e+00 671.0
28 TraesCS7A01G193900 chr1B 80.662 574 81 15 659 1229 593177022 593177568 5.230000e-113 418.0
29 TraesCS7A01G193900 chr1B 80.287 279 52 3 181 458 563750241 563749965 1.230000e-49 207.0
30 TraesCS7A01G193900 chr1A 85.061 1071 120 24 1231 2270 539323212 539324273 0.000000e+00 1055.0
31 TraesCS7A01G193900 chr1D 84.953 1070 127 15 1231 2289 439415240 439414194 0.000000e+00 1053.0
32 TraesCS7A01G193900 chr1D 78.421 190 27 9 909 1085 7061356 7061544 9.950000e-21 111.0
33 TraesCS7A01G193900 chr5B 93.182 616 34 4 625 1240 52309993 52309386 0.000000e+00 898.0
34 TraesCS7A01G193900 chr5B 92.121 495 34 4 182 671 52310482 52309988 0.000000e+00 693.0
35 TraesCS7A01G193900 chr2B 91.956 634 40 6 596 1229 641086462 641087084 0.000000e+00 878.0
36 TraesCS7A01G193900 chr2B 91.165 498 37 6 181 671 641085995 641086492 0.000000e+00 669.0
37 TraesCS7A01G193900 chr6D 81.109 974 145 31 2434 3382 32301587 32302546 0.000000e+00 743.0
38 TraesCS7A01G193900 chr6D 84.290 732 107 5 2666 3391 426482644 426481915 0.000000e+00 708.0
39 TraesCS7A01G193900 chr5D 84.254 724 92 12 2666 3386 334971623 334970919 0.000000e+00 686.0
40 TraesCS7A01G193900 chr5D 84.190 253 33 7 181 428 406475758 406476008 4.370000e-59 239.0
41 TraesCS7A01G193900 chr5D 83.794 253 36 5 182 430 530409334 530409083 5.660000e-58 235.0
42 TraesCS7A01G193900 chr4A 83.607 732 105 7 2666 3391 661439187 661439909 0.000000e+00 673.0
43 TraesCS7A01G193900 chr6B 82.951 698 86 15 2666 3355 124475192 124475864 1.740000e-167 599.0
44 TraesCS7A01G193900 chr6B 83.648 159 16 6 1072 1229 188584355 188584206 1.270000e-29 141.0
45 TraesCS7A01G193900 chr3B 83.688 564 84 5 2668 3225 811010475 811011036 3.000000e-145 525.0
46 TraesCS7A01G193900 chr3A 81.422 619 77 25 2483 3071 741359463 741360073 3.960000e-129 472.0
47 TraesCS7A01G193900 chr3A 82.545 275 45 3 182 454 642361076 642361349 4.370000e-59 239.0
48 TraesCS7A01G193900 chr4D 85.185 324 41 3 911 1233 504890732 504890415 3.260000e-85 326.0
49 TraesCS7A01G193900 chr3D 83.951 324 37 4 911 1233 91368609 91368918 2.560000e-76 296.0
50 TraesCS7A01G193900 chr3D 83.399 253 37 5 182 430 92363609 92363358 2.630000e-56 230.0
51 TraesCS7A01G193900 chr2D 83.486 327 40 8 909 1229 633229541 633229859 3.310000e-75 292.0
52 TraesCS7A01G193900 chr2D 88.542 192 14 4 1040 1229 572033180 572033365 3.400000e-55 226.0
53 TraesCS7A01G193900 chr5A 79.758 331 48 8 915 1232 28396569 28396245 4.400000e-54 222.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G193900 chr7A 151873088 151876478 3390 False 6263.0 6263 100.0000 1 3391 1 chr7A.!!$F1 3390
1 TraesCS7A01G193900 chr7A 151960449 151961526 1077 True 1325.0 1325 89.1470 1231 2289 1 chr7A.!!$R1 1058
2 TraesCS7A01G193900 chr7A 152507171 152508232 1061 False 1280.0 1280 88.4760 1231 2298 1 chr7A.!!$F3 1067
3 TraesCS7A01G193900 chr7B 113538593 113539808 1215 True 1393.0 1393 87.6220 1231 2435 1 chr7B.!!$R2 1204
4 TraesCS7A01G193900 chr7B 113801724 113802807 1083 True 1367.0 1367 89.7060 1231 2298 1 chr7B.!!$R3 1067
5 TraesCS7A01G193900 chr7B 616619410 616620463 1053 False 1349.0 1349 90.0370 181 1229 1 chr7B.!!$F2 1048
6 TraesCS7A01G193900 chr7B 113527235 113528462 1227 True 1332.0 1332 86.7150 1231 2435 1 chr7B.!!$R1 1204
7 TraesCS7A01G193900 chr7B 113922579 113923618 1039 False 1291.0 1291 89.3370 1231 2255 1 chr7B.!!$F1 1024
8 TraesCS7A01G193900 chr7B 154160864 154161928 1064 True 745.0 745 79.8700 1240 2276 1 chr7B.!!$R4 1036
9 TraesCS7A01G193900 chr7D 151915867 151916941 1074 True 1356.0 1356 89.6740 1231 2289 1 chr7D.!!$R4 1058
10 TraesCS7A01G193900 chr7D 151790368 151791427 1059 True 1347.0 1347 89.6810 1231 2289 1 chr7D.!!$R3 1058
11 TraesCS7A01G193900 chr7D 152087007 152088093 1086 False 1254.0 1254 87.7960 1231 2305 1 chr7D.!!$F2 1074
12 TraesCS7A01G193900 chr7D 184573537 184574597 1060 True 752.0 752 79.9810 1240 2276 1 chr7D.!!$R5 1036
13 TraesCS7A01G193900 chr7D 111620409 111621386 977 False 702.0 702 80.2430 2434 3386 1 chr7D.!!$F1 952
14 TraesCS7A01G193900 chr7D 151778234 151779585 1351 True 636.2 1203 93.3075 33 2435 2 chr7D.!!$R6 2402
15 TraesCS7A01G193900 chrUn 185554711 185555805 1094 True 1251.0 1251 87.5910 1231 2305 1 chrUn.!!$R1 1074
16 TraesCS7A01G193900 chrUn 235701490 235702579 1089 True 1251.0 1251 87.7060 1231 2298 1 chrUn.!!$R2 1067
17 TraesCS7A01G193900 chrUn 85701103 85702192 1089 False 1245.0 1245 87.6150 1231 2298 1 chrUn.!!$F2 1067
18 TraesCS7A01G193900 chrUn 85624484 85625407 923 False 1077.0 1077 88.0950 1231 2133 1 chrUn.!!$F1 902
19 TraesCS7A01G193900 chrUn 294621448 294622135 687 True 702.0 702 85.2390 2671 3354 1 chrUn.!!$R3 683
20 TraesCS7A01G193900 chr1B 596247497 596248562 1065 True 1081.0 1081 85.2230 1231 2289 1 chr1B.!!$R3 1058
21 TraesCS7A01G193900 chr1B 145346991 145347709 718 True 671.0 671 83.6760 2666 3386 1 chr1B.!!$R1 720
22 TraesCS7A01G193900 chr1B 593177022 593177568 546 False 418.0 418 80.6620 659 1229 1 chr1B.!!$F1 570
23 TraesCS7A01G193900 chr1A 539323212 539324273 1061 False 1055.0 1055 85.0610 1231 2270 1 chr1A.!!$F1 1039
24 TraesCS7A01G193900 chr1D 439414194 439415240 1046 True 1053.0 1053 84.9530 1231 2289 1 chr1D.!!$R1 1058
25 TraesCS7A01G193900 chr5B 52309386 52310482 1096 True 795.5 898 92.6515 182 1240 2 chr5B.!!$R1 1058
26 TraesCS7A01G193900 chr2B 641085995 641087084 1089 False 773.5 878 91.5605 181 1229 2 chr2B.!!$F1 1048
27 TraesCS7A01G193900 chr6D 32301587 32302546 959 False 743.0 743 81.1090 2434 3382 1 chr6D.!!$F1 948
28 TraesCS7A01G193900 chr6D 426481915 426482644 729 True 708.0 708 84.2900 2666 3391 1 chr6D.!!$R1 725
29 TraesCS7A01G193900 chr5D 334970919 334971623 704 True 686.0 686 84.2540 2666 3386 1 chr5D.!!$R1 720
30 TraesCS7A01G193900 chr4A 661439187 661439909 722 False 673.0 673 83.6070 2666 3391 1 chr4A.!!$F1 725
31 TraesCS7A01G193900 chr6B 124475192 124475864 672 False 599.0 599 82.9510 2666 3355 1 chr6B.!!$F1 689
32 TraesCS7A01G193900 chr3B 811010475 811011036 561 False 525.0 525 83.6880 2668 3225 1 chr3B.!!$F1 557
33 TraesCS7A01G193900 chr3A 741359463 741360073 610 False 472.0 472 81.4220 2483 3071 1 chr3A.!!$F2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.032952 TGCACCAAGTCTACGTCACC 59.967 55.0 0.00 0.00 0.0 4.02 F
63 64 0.167470 CATTCTTGTCTGCAGCCACG 59.833 55.0 9.47 0.82 0.0 4.94 F
122 123 0.178873 ACTAACCTTGGCCTCCCTCA 60.179 55.0 3.32 0.00 0.0 3.86 F
1316 1391 0.321564 CAGAAAGACATGCCCCGACA 60.322 55.0 0.00 0.00 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1019 1091 0.322546 AAAGCCAAGGACATCCGGAC 60.323 55.0 6.12 0.0 42.08 4.79 R
1688 1913 0.560688 AGAAGGGTCCCTTTGCCAAA 59.439 50.0 24.58 0.0 44.82 3.28 R
1796 2028 0.731417 CAAAGATCTTGGCGAGCAGG 59.269 55.0 9.17 0.0 0.00 4.85 R
2724 3142 0.179026 AGAGCTATGACGGCGGACTA 60.179 55.0 13.24 0.0 34.52 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.143122 ACACAATGCACCAAGTCTACG 58.857 47.619 0.00 0.00 0.00 3.51
21 22 2.143122 CACAATGCACCAAGTCTACGT 58.857 47.619 0.00 0.00 0.00 3.57
22 23 2.157668 CACAATGCACCAAGTCTACGTC 59.842 50.000 0.00 0.00 0.00 4.34
23 24 2.224185 ACAATGCACCAAGTCTACGTCA 60.224 45.455 0.00 0.00 0.00 4.35
24 25 2.080286 ATGCACCAAGTCTACGTCAC 57.920 50.000 0.00 0.00 0.00 3.67
25 26 0.032952 TGCACCAAGTCTACGTCACC 59.967 55.000 0.00 0.00 0.00 4.02
26 27 0.317479 GCACCAAGTCTACGTCACCT 59.683 55.000 0.00 0.00 0.00 4.00
27 28 1.935300 GCACCAAGTCTACGTCACCTG 60.935 57.143 0.00 0.00 0.00 4.00
28 29 1.611977 CACCAAGTCTACGTCACCTGA 59.388 52.381 0.00 0.00 0.00 3.86
29 30 1.612463 ACCAAGTCTACGTCACCTGAC 59.388 52.381 0.00 0.00 41.47 3.51
30 31 1.611977 CCAAGTCTACGTCACCTGACA 59.388 52.381 6.27 0.00 44.99 3.58
31 32 2.231478 CCAAGTCTACGTCACCTGACAT 59.769 50.000 6.27 0.00 44.99 3.06
63 64 0.167470 CATTCTTGTCTGCAGCCACG 59.833 55.000 9.47 0.82 0.00 4.94
72 73 1.067846 TCTGCAGCCACGTAGTAACTG 60.068 52.381 9.47 0.00 41.61 3.16
75 76 2.933495 CAGCCACGTAGTAACTGCTA 57.067 50.000 0.00 0.00 41.61 3.49
76 77 3.226346 CAGCCACGTAGTAACTGCTAA 57.774 47.619 0.00 0.00 41.61 3.09
77 78 2.921754 CAGCCACGTAGTAACTGCTAAC 59.078 50.000 0.00 0.00 41.61 2.34
79 80 2.921754 GCCACGTAGTAACTGCTAACTG 59.078 50.000 0.00 0.00 41.61 3.16
80 81 3.508762 CCACGTAGTAACTGCTAACTGG 58.491 50.000 0.00 0.00 41.61 4.00
82 83 3.918591 CACGTAGTAACTGCTAACTGGTG 59.081 47.826 0.00 0.00 41.61 4.17
83 84 3.571401 ACGTAGTAACTGCTAACTGGTGT 59.429 43.478 0.00 0.00 41.94 4.16
85 86 5.241506 ACGTAGTAACTGCTAACTGGTGTTA 59.758 40.000 0.00 0.00 41.94 2.41
86 87 6.151691 CGTAGTAACTGCTAACTGGTGTTAA 58.848 40.000 0.00 0.00 38.09 2.01
87 88 6.810182 CGTAGTAACTGCTAACTGGTGTTAAT 59.190 38.462 0.00 0.00 38.09 1.40
88 89 7.330208 CGTAGTAACTGCTAACTGGTGTTAATT 59.670 37.037 0.00 0.00 38.09 1.40
89 90 9.643693 GTAGTAACTGCTAACTGGTGTTAATTA 57.356 33.333 0.00 0.00 38.09 1.40
94 95 9.899661 AACTGCTAACTGGTGTTAATTATATCA 57.100 29.630 0.00 0.00 38.09 2.15
97 98 9.845740 TGCTAACTGGTGTTAATTATATCATGT 57.154 29.630 0.00 0.00 38.09 3.21
114 115 6.699575 ATCATGTAATCAACTAACCTTGGC 57.300 37.500 0.00 0.00 0.00 4.52
115 116 4.947388 TCATGTAATCAACTAACCTTGGCC 59.053 41.667 0.00 0.00 0.00 5.36
116 117 4.650972 TGTAATCAACTAACCTTGGCCT 57.349 40.909 3.32 0.00 0.00 5.19
117 118 4.585879 TGTAATCAACTAACCTTGGCCTC 58.414 43.478 3.32 0.00 0.00 4.70
118 119 2.808906 ATCAACTAACCTTGGCCTCC 57.191 50.000 3.32 0.00 0.00 4.30
119 120 0.696501 TCAACTAACCTTGGCCTCCC 59.303 55.000 3.32 0.00 0.00 4.30
120 121 0.698818 CAACTAACCTTGGCCTCCCT 59.301 55.000 3.32 0.00 0.00 4.20
121 122 0.992695 AACTAACCTTGGCCTCCCTC 59.007 55.000 3.32 0.00 0.00 4.30
122 123 0.178873 ACTAACCTTGGCCTCCCTCA 60.179 55.000 3.32 0.00 0.00 3.86
123 124 1.216990 CTAACCTTGGCCTCCCTCAT 58.783 55.000 3.32 0.00 0.00 2.90
124 125 0.918983 TAACCTTGGCCTCCCTCATG 59.081 55.000 3.32 0.00 0.00 3.07
125 126 1.867595 AACCTTGGCCTCCCTCATGG 61.868 60.000 3.32 0.00 35.22 3.66
126 127 2.002977 CCTTGGCCTCCCTCATGGA 61.003 63.158 3.32 0.00 42.41 3.41
127 128 1.225704 CTTGGCCTCCCTCATGGAC 59.774 63.158 3.32 0.00 38.61 4.02
128 129 2.276309 CTTGGCCTCCCTCATGGACC 62.276 65.000 3.32 0.00 38.61 4.46
129 130 3.493303 GGCCTCCCTCATGGACCC 61.493 72.222 0.00 0.00 38.61 4.46
130 131 3.493303 GCCTCCCTCATGGACCCC 61.493 72.222 0.00 0.00 38.61 4.95
131 132 3.164269 CCTCCCTCATGGACCCCG 61.164 72.222 0.00 0.00 38.61 5.73
132 133 2.365635 CTCCCTCATGGACCCCGT 60.366 66.667 0.00 0.00 38.61 5.28
133 134 1.075525 CTCCCTCATGGACCCCGTA 60.076 63.158 0.00 0.00 38.61 4.02
143 144 2.404559 TGGACCCCGTAATCAGCTAAT 58.595 47.619 0.00 0.00 0.00 1.73
161 162 0.548031 ATGTCCATGGCGATCAGGTT 59.452 50.000 6.96 0.00 0.00 3.50
165 166 3.013921 GTCCATGGCGATCAGGTTTTTA 58.986 45.455 6.96 0.00 0.00 1.52
170 171 2.084546 GGCGATCAGGTTTTTACTGCT 58.915 47.619 0.00 0.00 35.94 4.24
171 172 2.096013 GGCGATCAGGTTTTTACTGCTC 59.904 50.000 0.00 0.00 35.94 4.26
172 173 2.096013 GCGATCAGGTTTTTACTGCTCC 59.904 50.000 0.00 0.00 35.94 4.70
173 174 2.348666 CGATCAGGTTTTTACTGCTCCG 59.651 50.000 0.00 0.00 35.94 4.63
174 175 2.922740 TCAGGTTTTTACTGCTCCGT 57.077 45.000 0.00 0.00 35.94 4.69
175 176 2.489971 TCAGGTTTTTACTGCTCCGTG 58.510 47.619 0.00 0.00 35.94 4.94
176 177 2.158871 TCAGGTTTTTACTGCTCCGTGT 60.159 45.455 0.00 0.00 35.94 4.49
177 178 2.032030 CAGGTTTTTACTGCTCCGTGTG 60.032 50.000 0.00 0.00 0.00 3.82
178 179 1.265905 GGTTTTTACTGCTCCGTGTGG 59.734 52.381 0.00 0.00 0.00 4.17
179 180 0.948678 TTTTTACTGCTCCGTGTGGC 59.051 50.000 0.00 0.00 34.14 5.01
197 199 3.978855 GTGGCCGAGTGAATTACAAAAAC 59.021 43.478 0.00 0.00 0.00 2.43
201 203 5.227152 GCCGAGTGAATTACAAAAACCATT 58.773 37.500 0.00 0.00 0.00 3.16
394 399 8.774586 ACGGATTGCAAATAGACATAATAGAAC 58.225 33.333 1.71 0.00 0.00 3.01
477 483 6.022315 AGGATTATGTTCTATCTCCCTCCTG 58.978 44.000 0.00 0.00 0.00 3.86
494 500 0.792640 CTGTGACCGTTGACTCATGC 59.207 55.000 0.00 0.00 0.00 4.06
621 627 0.946221 CTCGCTCAAGTGAACGGCTT 60.946 55.000 4.44 0.00 34.70 4.35
790 862 1.078918 TGTCGGCCATCAGAAGCTG 60.079 57.895 2.24 0.00 36.68 4.24
823 895 3.598715 CGATACCCACGGCGGCTA 61.599 66.667 13.24 0.00 0.00 3.93
914 986 3.062466 TCGGTCTCTCGTGGGCTG 61.062 66.667 0.00 0.00 0.00 4.85
982 1054 3.113745 GTCGCGAGGACCCGATTA 58.886 61.111 10.24 0.00 39.90 1.75
983 1055 1.434696 GTCGCGAGGACCCGATTAA 59.565 57.895 10.24 0.00 39.90 1.40
1019 1091 8.716909 GGGGTCATTATGTAAAACAAAATTGTG 58.283 33.333 0.00 0.00 41.31 3.33
1053 1125 2.390938 GGCTTTTTAGTTTGCCACGTC 58.609 47.619 0.00 0.00 44.34 4.34
1066 1138 3.991051 ACGTCACCCTGTCCAGCG 61.991 66.667 0.00 0.00 0.00 5.18
1119 1191 2.159085 GCCTAAGCCATCGACTAGTGTT 60.159 50.000 0.00 0.00 0.00 3.32
1120 1192 3.679083 GCCTAAGCCATCGACTAGTGTTT 60.679 47.826 0.00 0.00 0.00 2.83
1121 1193 4.504858 CCTAAGCCATCGACTAGTGTTTT 58.495 43.478 0.00 0.00 0.00 2.43
1122 1194 4.935808 CCTAAGCCATCGACTAGTGTTTTT 59.064 41.667 0.00 0.00 0.00 1.94
1163 1235 7.381766 AGGCTCAAAATTAATGATTTTTGGC 57.618 32.000 10.55 11.54 43.65 4.52
1164 1236 6.941436 AGGCTCAAAATTAATGATTTTTGGCA 59.059 30.769 17.49 0.00 43.65 4.92
1165 1237 7.022979 GGCTCAAAATTAATGATTTTTGGCAC 58.977 34.615 17.49 8.25 43.65 5.01
1166 1238 7.308469 GGCTCAAAATTAATGATTTTTGGCACA 60.308 33.333 17.49 0.00 43.65 4.57
1167 1239 8.074972 GCTCAAAATTAATGATTTTTGGCACAA 58.925 29.630 10.55 0.00 43.65 3.33
1168 1240 9.947669 CTCAAAATTAATGATTTTTGGCACAAA 57.052 25.926 0.70 0.70 43.65 2.83
1172 1244 9.733219 AAATTAATGATTTTTGGCACAAAACTG 57.267 25.926 2.55 0.00 35.24 3.16
1181 1253 3.616219 TGGCACAAAACTGTAGAAGTGT 58.384 40.909 0.00 0.00 34.95 3.55
1182 1254 3.376859 TGGCACAAAACTGTAGAAGTGTG 59.623 43.478 0.00 0.00 34.95 3.82
1183 1255 3.625764 GGCACAAAACTGTAGAAGTGTGA 59.374 43.478 5.82 0.00 39.81 3.58
1184 1256 4.275936 GGCACAAAACTGTAGAAGTGTGAT 59.724 41.667 5.82 0.00 39.81 3.06
1185 1257 5.221048 GGCACAAAACTGTAGAAGTGTGATT 60.221 40.000 5.82 0.00 39.81 2.57
1186 1258 6.265577 GCACAAAACTGTAGAAGTGTGATTT 58.734 36.000 5.82 0.00 39.81 2.17
1187 1259 6.414987 GCACAAAACTGTAGAAGTGTGATTTC 59.585 38.462 5.82 0.00 39.81 2.17
1188 1260 7.679638 GCACAAAACTGTAGAAGTGTGATTTCT 60.680 37.037 5.82 0.00 39.81 2.52
1189 1261 7.641411 CACAAAACTGTAGAAGTGTGATTTCTG 59.359 37.037 0.00 0.00 39.81 3.02
1190 1262 5.931441 AACTGTAGAAGTGTGATTTCTGC 57.069 39.130 0.00 0.00 39.81 4.26
1191 1263 4.960938 ACTGTAGAAGTGTGATTTCTGCA 58.039 39.130 5.82 5.82 42.41 4.41
1192 1264 5.368145 ACTGTAGAAGTGTGATTTCTGCAA 58.632 37.500 7.09 0.00 43.44 4.08
1193 1265 5.822519 ACTGTAGAAGTGTGATTTCTGCAAA 59.177 36.000 7.09 0.00 43.44 3.68
1194 1266 6.060028 TGTAGAAGTGTGATTTCTGCAAAC 57.940 37.500 3.79 0.00 41.94 2.93
1195 1267 4.574599 AGAAGTGTGATTTCTGCAAACC 57.425 40.909 0.00 0.00 33.79 3.27
1196 1268 3.319122 AGAAGTGTGATTTCTGCAAACCC 59.681 43.478 0.00 0.00 33.79 4.11
1197 1269 2.949447 AGTGTGATTTCTGCAAACCCT 58.051 42.857 0.00 0.00 0.00 4.34
1198 1270 4.098914 AGTGTGATTTCTGCAAACCCTA 57.901 40.909 0.00 0.00 0.00 3.53
1199 1271 3.821033 AGTGTGATTTCTGCAAACCCTAC 59.179 43.478 0.00 0.00 0.00 3.18
1200 1272 3.057526 GTGTGATTTCTGCAAACCCTACC 60.058 47.826 0.00 0.00 0.00 3.18
1201 1273 2.492088 GTGATTTCTGCAAACCCTACCC 59.508 50.000 0.00 0.00 0.00 3.69
1202 1274 2.378547 TGATTTCTGCAAACCCTACCCT 59.621 45.455 0.00 0.00 0.00 4.34
1203 1275 3.181423 TGATTTCTGCAAACCCTACCCTT 60.181 43.478 0.00 0.00 0.00 3.95
1204 1276 2.579410 TTCTGCAAACCCTACCCTTC 57.421 50.000 0.00 0.00 0.00 3.46
1205 1277 1.440618 TCTGCAAACCCTACCCTTCA 58.559 50.000 0.00 0.00 0.00 3.02
1206 1278 1.777878 TCTGCAAACCCTACCCTTCAA 59.222 47.619 0.00 0.00 0.00 2.69
1207 1279 2.378547 TCTGCAAACCCTACCCTTCAAT 59.621 45.455 0.00 0.00 0.00 2.57
1208 1280 2.493278 CTGCAAACCCTACCCTTCAATG 59.507 50.000 0.00 0.00 0.00 2.82
1209 1281 2.158385 TGCAAACCCTACCCTTCAATGT 60.158 45.455 0.00 0.00 0.00 2.71
1210 1282 3.074687 TGCAAACCCTACCCTTCAATGTA 59.925 43.478 0.00 0.00 0.00 2.29
1211 1283 3.694566 GCAAACCCTACCCTTCAATGTAG 59.305 47.826 0.00 0.00 35.33 2.74
1212 1284 4.566907 GCAAACCCTACCCTTCAATGTAGA 60.567 45.833 0.00 0.00 37.26 2.59
1213 1285 5.755849 CAAACCCTACCCTTCAATGTAGAT 58.244 41.667 0.00 0.00 37.26 1.98
1214 1286 5.373812 AACCCTACCCTTCAATGTAGATG 57.626 43.478 0.00 0.00 37.26 2.90
1215 1287 4.371681 ACCCTACCCTTCAATGTAGATGT 58.628 43.478 0.00 0.00 37.26 3.06
1216 1288 4.788617 ACCCTACCCTTCAATGTAGATGTT 59.211 41.667 0.00 0.00 37.26 2.71
1217 1289 5.253096 ACCCTACCCTTCAATGTAGATGTTT 59.747 40.000 0.00 0.00 37.26 2.83
1218 1290 6.187682 CCCTACCCTTCAATGTAGATGTTTT 58.812 40.000 0.00 0.00 37.26 2.43
1219 1291 6.318900 CCCTACCCTTCAATGTAGATGTTTTC 59.681 42.308 0.00 0.00 37.26 2.29
1220 1292 7.112779 CCTACCCTTCAATGTAGATGTTTTCT 58.887 38.462 0.00 0.00 37.26 2.52
1221 1293 6.824305 ACCCTTCAATGTAGATGTTTTCTG 57.176 37.500 0.00 0.00 35.79 3.02
1222 1294 5.183904 ACCCTTCAATGTAGATGTTTTCTGC 59.816 40.000 0.00 0.00 37.56 4.26
1235 1307 4.724399 TGTTTTCTGCAATTCAGTCCCTA 58.276 39.130 0.00 0.00 43.32 3.53
1285 1360 3.987404 GCGGTGGCTCAACTGAAT 58.013 55.556 0.00 0.00 35.83 2.57
1316 1391 0.321564 CAGAAAGACATGCCCCGACA 60.322 55.000 0.00 0.00 0.00 4.35
1355 1430 2.105993 CAGGAGATGGCCAAGATCATCA 59.894 50.000 10.96 0.00 41.45 3.07
1358 1433 2.106166 GAGATGGCCAAGATCATCACCT 59.894 50.000 10.96 0.00 41.45 4.00
1519 1744 5.543507 AATTAAATTGCAGGGTTGTGACA 57.456 34.783 0.00 0.00 0.00 3.58
1535 1760 2.125753 CACCTCTGTCCTGCTCGC 60.126 66.667 0.00 0.00 0.00 5.03
1574 1799 2.665603 GGAGAAGGACGCCAAGCT 59.334 61.111 0.00 0.00 38.35 3.74
1586 1811 1.871126 GCCAAGCTGAACAAGAGCCC 61.871 60.000 0.00 0.00 37.12 5.19
1657 1882 3.147595 CGGGGATCGTCTCCTGCA 61.148 66.667 6.72 0.00 44.28 4.41
1694 1926 3.053291 GTCCCGCGACATTTGGCA 61.053 61.111 8.23 0.00 38.99 4.92
1717 1949 2.450502 ACCCTTCTGGCCAGTGGT 60.451 61.111 31.58 29.25 37.83 4.16
1735 1967 3.749064 GCTGGGCAGACGAGACGA 61.749 66.667 0.00 0.00 0.00 4.20
1844 2076 1.545706 GCCTCGACCTCAAGGACCTT 61.546 60.000 0.00 0.00 38.94 3.50
1919 2168 0.756903 ACCGGCTCTACAACAACACT 59.243 50.000 0.00 0.00 0.00 3.55
1977 2241 1.974875 TACGCCGACAAGCTGAGGA 60.975 57.895 0.00 0.00 0.00 3.71
2010 2274 1.921243 CGTTGATGACCGCACTATGA 58.079 50.000 0.00 0.00 0.00 2.15
2392 2763 3.660501 TCGTCAGCAATAACAGTGAGT 57.339 42.857 0.00 0.00 0.00 3.41
2393 2764 4.776795 TCGTCAGCAATAACAGTGAGTA 57.223 40.909 0.00 0.00 0.00 2.59
2396 2767 5.986741 TCGTCAGCAATAACAGTGAGTAAAA 59.013 36.000 0.00 0.00 0.00 1.52
2397 2768 6.480651 TCGTCAGCAATAACAGTGAGTAAAAA 59.519 34.615 0.00 0.00 0.00 1.94
2398 2769 6.573725 CGTCAGCAATAACAGTGAGTAAAAAC 59.426 38.462 0.00 0.00 0.00 2.43
2444 2815 1.244697 ATCGATATCTCTGCGCCGGT 61.245 55.000 4.18 0.00 0.00 5.28
2446 2817 1.364171 GATATCTCTGCGCCGGTGT 59.636 57.895 17.91 0.00 0.00 4.16
2447 2818 0.941463 GATATCTCTGCGCCGGTGTG 60.941 60.000 17.91 10.23 0.00 3.82
2467 2838 1.551452 CCGGTCTAAATTTGGGCCAA 58.449 50.000 23.06 16.66 32.26 4.52
2500 2871 2.417107 GCATTGGATTTGGATGCGTGAA 60.417 45.455 0.00 0.00 37.09 3.18
2501 2872 3.181397 CATTGGATTTGGATGCGTGAAC 58.819 45.455 0.00 0.00 0.00 3.18
2504 2875 0.523335 GATTTGGATGCGTGAACGGC 60.523 55.000 4.84 0.00 40.23 5.68
2532 2903 1.941325 CCGCTACCAAGTCATCTTCC 58.059 55.000 0.00 0.00 0.00 3.46
2537 2908 3.198853 GCTACCAAGTCATCTTCCTCCTT 59.801 47.826 0.00 0.00 0.00 3.36
2548 2919 4.680237 CCTCCTTCCGCACGCACA 62.680 66.667 0.00 0.00 0.00 4.57
2555 2926 4.896028 CCGCACGCACACGCAAAA 62.896 61.111 0.00 0.00 45.53 2.44
2556 2927 3.667486 CGCACGCACACGCAAAAC 61.667 61.111 0.00 0.00 45.53 2.43
2587 2970 4.415512 AGAGTAGTATCTCTCCTCCTGCTT 59.584 45.833 0.00 0.00 40.28 3.91
2638 3047 2.430921 CACTCGCCGTCGAAGCTT 60.431 61.111 0.00 0.00 44.98 3.74
2640 3049 2.430921 CTCGCCGTCGAAGCTTGT 60.431 61.111 2.10 0.00 44.98 3.16
2642 3051 2.733218 CGCCGTCGAAGCTTGTCA 60.733 61.111 2.10 0.00 38.10 3.58
2648 3057 1.009389 GTCGAAGCTTGTCAGGGACG 61.009 60.000 2.10 0.00 34.95 4.79
2661 3078 4.492160 GGACGCTCGCCATCGACA 62.492 66.667 0.00 0.00 40.21 4.35
2664 3081 4.862092 CGCTCGCCATCGACAGCT 62.862 66.667 6.90 0.00 40.21 4.24
2669 3086 4.148825 GCCATCGACAGCTCCGGT 62.149 66.667 0.00 0.00 0.00 5.28
2676 3093 3.948086 GACAGCTCCGGTCGTGTCG 62.948 68.421 14.19 0.00 30.70 4.35
2714 3132 4.452733 CGCCGGGTGAGAGTTCCC 62.453 72.222 2.18 0.00 40.26 3.97
2719 3137 1.153349 GGGTGAGAGTTCCCGCATC 60.153 63.158 0.00 0.00 33.97 3.91
2720 3138 1.596934 GGTGAGAGTTCCCGCATCA 59.403 57.895 0.00 0.00 0.00 3.07
2724 3142 0.103208 GAGAGTTCCCGCATCATCGT 59.897 55.000 0.00 0.00 0.00 3.73
2744 3162 1.038130 AGTCCGCCGTCATAGCTCTT 61.038 55.000 0.00 0.00 0.00 2.85
2745 3163 0.872021 GTCCGCCGTCATAGCTCTTG 60.872 60.000 0.00 0.00 0.00 3.02
2746 3164 1.035385 TCCGCCGTCATAGCTCTTGA 61.035 55.000 0.00 0.00 0.00 3.02
2747 3165 0.032678 CCGCCGTCATAGCTCTTGAT 59.967 55.000 0.00 0.00 0.00 2.57
2782 3204 3.058160 GCCATGCAGCTCCGTTGT 61.058 61.111 0.00 0.00 0.00 3.32
2814 3236 3.309954 CCATTGTTAGCTAGCCGTTCTTC 59.690 47.826 12.13 0.00 0.00 2.87
2849 3271 7.954666 TTTCTATAAGCCCATTGTAGCTTTT 57.045 32.000 14.20 10.22 46.99 2.27
2853 3275 2.359900 AGCCCATTGTAGCTTTTCTCG 58.640 47.619 0.00 0.00 35.22 4.04
2875 3298 2.354539 CGGTTGCACCTTTTGGCG 60.355 61.111 0.00 0.00 45.59 5.69
2879 3302 1.529478 TTGCACCTTTTGGCGGCTA 60.529 52.632 11.43 0.00 45.59 3.93
2881 3304 2.265182 GCACCTTTTGGCGGCTACA 61.265 57.895 11.43 0.00 45.59 2.74
2884 3307 2.686816 CCTTTTGGCGGCTACACGG 61.687 63.158 11.43 0.32 0.00 4.94
2886 3309 2.182614 CTTTTGGCGGCTACACGGTG 62.183 60.000 11.43 6.58 0.00 4.94
3000 3426 3.128938 GGTTGTAGCTCTGACGTACATCT 59.871 47.826 0.00 0.00 0.00 2.90
3001 3427 4.380655 GGTTGTAGCTCTGACGTACATCTT 60.381 45.833 0.00 0.00 0.00 2.40
3027 3455 1.895131 GCCCCTGCTTTCTTTGATTCA 59.105 47.619 0.00 0.00 33.53 2.57
3085 3514 4.629634 GCCAGTTGTAGCAAAAACAAAAGT 59.370 37.500 0.00 0.00 38.50 2.66
3100 3529 2.951642 CAAAAGTTGGTTCCAGCTCTGA 59.048 45.455 8.54 0.00 0.00 3.27
3124 3553 4.873746 TTGCCGGGACAAAAATCATTTA 57.126 36.364 2.18 0.00 0.00 1.40
3128 3557 4.173256 CCGGGACAAAAATCATTTACTGC 58.827 43.478 0.00 0.00 0.00 4.40
3136 3565 6.017192 ACAAAAATCATTTACTGCAAAAGCCC 60.017 34.615 0.00 0.00 0.00 5.19
3140 3576 3.640967 TCATTTACTGCAAAAGCCCTTGT 59.359 39.130 0.00 0.00 0.00 3.16
3146 3582 0.463620 GCAAAAGCCCTTGTTGGTCA 59.536 50.000 0.00 0.00 0.00 4.02
3149 3585 2.955660 CAAAAGCCCTTGTTGGTCACTA 59.044 45.455 0.00 0.00 0.00 2.74
3150 3586 3.525800 AAAGCCCTTGTTGGTCACTAT 57.474 42.857 0.00 0.00 0.00 2.12
3155 3598 3.761897 CCCTTGTTGGTCACTATTTCCA 58.238 45.455 0.00 0.00 0.00 3.53
3194 3637 1.598701 AAAATCTTGCCGGCAGGAGC 61.599 55.000 39.07 9.80 41.02 4.70
3212 3655 3.181490 GGAGCCTTTTGTCTTGTCGTTTT 60.181 43.478 0.00 0.00 0.00 2.43
3272 3715 3.499737 CCAGGCGATGCACCGAAC 61.500 66.667 3.51 0.00 0.00 3.95
3274 3717 4.778143 AGGCGATGCACCGAACCC 62.778 66.667 3.51 0.00 0.00 4.11
3279 3722 0.461163 CGATGCACCGAACCCACATA 60.461 55.000 0.00 0.00 0.00 2.29
3294 3737 2.766263 CCACATACTGGTTCCAGCTCTA 59.234 50.000 17.55 4.73 37.57 2.43
3301 3744 2.941720 CTGGTTCCAGCTCTAGATTTGC 59.058 50.000 5.89 0.00 0.00 3.68
3324 3767 5.813672 GCTGGTTGCATCAAAATCATATGTT 59.186 36.000 1.90 0.00 42.31 2.71
3342 3786 1.004277 GTTGGTTCCAGCATCCCTGTA 59.996 52.381 0.95 0.00 40.06 2.74
3343 3787 0.618458 TGGTTCCAGCATCCCTGTAC 59.382 55.000 0.00 0.00 40.06 2.90
3378 3823 2.540973 CGCTGTCGCAGTTATGTAGCTA 60.541 50.000 8.32 0.00 35.30 3.32
3382 3827 3.066342 TGTCGCAGTTATGTAGCTAGTCC 59.934 47.826 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.143122 CGTAGACTTGGTGCATTGTGT 58.857 47.619 0.00 0.00 0.00 3.72
1 2 2.143122 ACGTAGACTTGGTGCATTGTG 58.857 47.619 0.00 0.00 0.00 3.33
2 3 2.224185 TGACGTAGACTTGGTGCATTGT 60.224 45.455 0.00 0.00 0.00 2.71
4 5 2.413837 GTGACGTAGACTTGGTGCATT 58.586 47.619 0.00 0.00 0.00 3.56
6 7 0.032952 GGTGACGTAGACTTGGTGCA 59.967 55.000 0.00 0.00 0.00 4.57
7 8 0.317479 AGGTGACGTAGACTTGGTGC 59.683 55.000 0.00 0.00 0.00 5.01
8 9 1.611977 TCAGGTGACGTAGACTTGGTG 59.388 52.381 8.81 0.00 0.00 4.17
9 10 1.612463 GTCAGGTGACGTAGACTTGGT 59.388 52.381 8.81 0.00 35.12 3.67
10 11 2.349297 GTCAGGTGACGTAGACTTGG 57.651 55.000 8.81 0.00 35.12 3.61
19 20 5.476047 TTGGCACTAGATGTCAGGTGACG 62.476 52.174 5.67 0.00 45.75 4.35
20 21 1.550524 TGGCACTAGATGTCAGGTGAC 59.449 52.381 2.99 2.99 38.27 3.67
21 22 1.937191 TGGCACTAGATGTCAGGTGA 58.063 50.000 0.00 0.00 38.27 4.02
22 23 2.768253 TTGGCACTAGATGTCAGGTG 57.232 50.000 0.00 0.00 45.75 4.00
23 24 3.181445 TGTTTTGGCACTAGATGTCAGGT 60.181 43.478 0.00 0.00 45.75 4.00
24 25 3.411446 TGTTTTGGCACTAGATGTCAGG 58.589 45.455 0.00 0.00 45.75 3.86
25 26 5.413833 AGAATGTTTTGGCACTAGATGTCAG 59.586 40.000 0.00 0.00 45.75 3.51
26 27 5.316167 AGAATGTTTTGGCACTAGATGTCA 58.684 37.500 0.00 0.00 42.71 3.58
27 28 5.886960 AGAATGTTTTGGCACTAGATGTC 57.113 39.130 0.00 0.00 0.00 3.06
28 29 5.536161 ACAAGAATGTTTTGGCACTAGATGT 59.464 36.000 0.00 0.00 35.91 3.06
29 30 6.017400 ACAAGAATGTTTTGGCACTAGATG 57.983 37.500 0.00 0.00 35.91 2.90
30 31 6.006449 AGACAAGAATGTTTTGGCACTAGAT 58.994 36.000 0.00 0.00 40.74 1.98
31 32 5.239306 CAGACAAGAATGTTTTGGCACTAGA 59.761 40.000 0.00 0.00 40.74 2.43
63 64 8.543862 AATTAACACCAGTTAGCAGTTACTAC 57.456 34.615 0.00 0.00 41.00 2.73
88 89 9.502091 GCCAAGGTTAGTTGATTACATGATATA 57.498 33.333 0.00 0.00 0.00 0.86
89 90 7.448469 GGCCAAGGTTAGTTGATTACATGATAT 59.552 37.037 0.00 0.00 0.00 1.63
90 91 6.770785 GGCCAAGGTTAGTTGATTACATGATA 59.229 38.462 0.00 0.00 0.00 2.15
91 92 5.594317 GGCCAAGGTTAGTTGATTACATGAT 59.406 40.000 0.00 0.00 0.00 2.45
92 93 4.947388 GGCCAAGGTTAGTTGATTACATGA 59.053 41.667 0.00 0.00 0.00 3.07
93 94 4.949856 AGGCCAAGGTTAGTTGATTACATG 59.050 41.667 5.01 0.00 0.00 3.21
94 95 5.193099 AGGCCAAGGTTAGTTGATTACAT 57.807 39.130 5.01 0.00 0.00 2.29
95 96 4.566907 GGAGGCCAAGGTTAGTTGATTACA 60.567 45.833 5.01 0.00 0.00 2.41
96 97 3.945921 GGAGGCCAAGGTTAGTTGATTAC 59.054 47.826 5.01 0.00 0.00 1.89
97 98 3.053917 GGGAGGCCAAGGTTAGTTGATTA 60.054 47.826 5.01 0.00 0.00 1.75
98 99 2.291605 GGGAGGCCAAGGTTAGTTGATT 60.292 50.000 5.01 0.00 0.00 2.57
99 100 1.285078 GGGAGGCCAAGGTTAGTTGAT 59.715 52.381 5.01 0.00 0.00 2.57
100 101 0.696501 GGGAGGCCAAGGTTAGTTGA 59.303 55.000 5.01 0.00 0.00 3.18
101 102 0.698818 AGGGAGGCCAAGGTTAGTTG 59.301 55.000 5.01 0.00 0.00 3.16
102 103 0.992695 GAGGGAGGCCAAGGTTAGTT 59.007 55.000 5.01 0.00 0.00 2.24
103 104 0.178873 TGAGGGAGGCCAAGGTTAGT 60.179 55.000 5.01 0.00 0.00 2.24
104 105 1.133976 CATGAGGGAGGCCAAGGTTAG 60.134 57.143 5.01 0.00 0.00 2.34
105 106 0.918983 CATGAGGGAGGCCAAGGTTA 59.081 55.000 5.01 0.00 0.00 2.85
106 107 1.693640 CATGAGGGAGGCCAAGGTT 59.306 57.895 5.01 0.00 0.00 3.50
107 108 2.311854 CCATGAGGGAGGCCAAGGT 61.312 63.158 5.01 0.00 40.01 3.50
108 109 2.002977 TCCATGAGGGAGGCCAAGG 61.003 63.158 5.01 0.00 42.15 3.61
109 110 3.745546 TCCATGAGGGAGGCCAAG 58.254 61.111 5.01 0.00 42.15 3.61
116 117 0.030501 ATTACGGGGTCCATGAGGGA 60.031 55.000 0.00 0.00 45.89 4.20
117 118 0.396811 GATTACGGGGTCCATGAGGG 59.603 60.000 0.00 0.00 34.83 4.30
118 119 1.070758 CTGATTACGGGGTCCATGAGG 59.929 57.143 0.00 0.00 0.00 3.86
119 120 1.541233 GCTGATTACGGGGTCCATGAG 60.541 57.143 0.00 0.00 0.00 2.90
120 121 0.468226 GCTGATTACGGGGTCCATGA 59.532 55.000 0.00 0.00 0.00 3.07
121 122 0.469917 AGCTGATTACGGGGTCCATG 59.530 55.000 0.00 0.00 0.00 3.66
122 123 2.097110 TAGCTGATTACGGGGTCCAT 57.903 50.000 0.00 0.00 0.00 3.41
123 124 1.868713 TTAGCTGATTACGGGGTCCA 58.131 50.000 0.00 0.00 0.00 4.02
124 125 2.104281 ACATTAGCTGATTACGGGGTCC 59.896 50.000 0.00 0.00 0.00 4.46
125 126 3.391049 GACATTAGCTGATTACGGGGTC 58.609 50.000 0.00 0.00 0.00 4.46
126 127 2.104281 GGACATTAGCTGATTACGGGGT 59.896 50.000 0.00 0.00 0.00 4.95
127 128 2.104111 TGGACATTAGCTGATTACGGGG 59.896 50.000 0.00 0.00 0.00 5.73
128 129 3.469008 TGGACATTAGCTGATTACGGG 57.531 47.619 0.00 0.00 0.00 5.28
129 130 3.748048 CCATGGACATTAGCTGATTACGG 59.252 47.826 5.56 0.00 0.00 4.02
130 131 3.187227 GCCATGGACATTAGCTGATTACG 59.813 47.826 18.40 0.00 0.00 3.18
131 132 3.187227 CGCCATGGACATTAGCTGATTAC 59.813 47.826 18.40 0.00 0.00 1.89
132 133 3.070878 TCGCCATGGACATTAGCTGATTA 59.929 43.478 18.40 0.00 0.00 1.75
133 134 2.158769 TCGCCATGGACATTAGCTGATT 60.159 45.455 18.40 0.00 0.00 2.57
143 144 0.327924 AAACCTGATCGCCATGGACA 59.672 50.000 18.40 8.46 0.00 4.02
161 162 0.887387 GGCCACACGGAGCAGTAAAA 60.887 55.000 0.00 0.00 0.00 1.52
170 171 2.107041 AATTCACTCGGCCACACGGA 62.107 55.000 2.24 0.00 0.00 4.69
171 172 0.390603 TAATTCACTCGGCCACACGG 60.391 55.000 2.24 0.00 0.00 4.94
172 173 0.719465 GTAATTCACTCGGCCACACG 59.281 55.000 2.24 0.00 0.00 4.49
173 174 1.803334 TGTAATTCACTCGGCCACAC 58.197 50.000 2.24 0.00 0.00 3.82
174 175 2.552599 TTGTAATTCACTCGGCCACA 57.447 45.000 2.24 0.00 0.00 4.17
175 176 3.907894 TTTTGTAATTCACTCGGCCAC 57.092 42.857 2.24 0.00 0.00 5.01
176 177 3.004944 GGTTTTTGTAATTCACTCGGCCA 59.995 43.478 2.24 0.00 0.00 5.36
177 178 3.004944 TGGTTTTTGTAATTCACTCGGCC 59.995 43.478 0.00 0.00 0.00 6.13
178 179 4.231718 TGGTTTTTGTAATTCACTCGGC 57.768 40.909 0.00 0.00 0.00 5.54
179 180 6.362283 GTCAATGGTTTTTGTAATTCACTCGG 59.638 38.462 0.00 0.00 0.00 4.63
197 199 4.536765 ACCCTAGCCTTTAATGTCAATGG 58.463 43.478 0.00 0.00 0.00 3.16
201 203 3.245087 TGCAACCCTAGCCTTTAATGTCA 60.245 43.478 0.00 0.00 0.00 3.58
290 295 1.806542 ACGAGCGAAACGGACTACTAA 59.193 47.619 0.00 0.00 34.93 2.24
295 300 2.138596 TAAAACGAGCGAAACGGACT 57.861 45.000 0.00 0.00 34.93 3.85
344 349 1.667236 TTGTGTCAAGTCAGCCTGTG 58.333 50.000 0.00 0.00 0.00 3.66
394 399 3.056749 AGGCTCTTTTACAGTGTAGTCCG 60.057 47.826 2.68 0.00 0.00 4.79
446 451 9.278978 GGGAGATAGAACATAATCCTCTTTTTC 57.721 37.037 0.00 0.00 0.00 2.29
458 464 5.141182 GTCACAGGAGGGAGATAGAACATA 58.859 45.833 0.00 0.00 0.00 2.29
465 471 0.629596 ACGGTCACAGGAGGGAGATA 59.370 55.000 0.00 0.00 0.00 1.98
477 483 1.298859 GGGCATGAGTCAACGGTCAC 61.299 60.000 0.00 0.00 0.00 3.67
686 758 2.041922 TCTGGTGCGCCTCCCTAT 60.042 61.111 18.96 0.00 35.27 2.57
767 839 2.835701 TTCTGATGGCCGACAGCGAC 62.836 60.000 19.83 0.00 45.17 5.19
771 843 1.088340 CAGCTTCTGATGGCCGACAG 61.088 60.000 18.93 18.93 32.44 3.51
859 931 1.521681 CTTAGCGCTTCCCCCTTCG 60.522 63.158 18.68 0.00 0.00 3.79
949 1021 0.833287 CGACCTTCATCTCCCATGGT 59.167 55.000 11.73 0.00 0.00 3.55
950 1022 0.533755 GCGACCTTCATCTCCCATGG 60.534 60.000 4.14 4.14 0.00 3.66
951 1023 0.877649 CGCGACCTTCATCTCCCATG 60.878 60.000 0.00 0.00 0.00 3.66
952 1024 1.043116 TCGCGACCTTCATCTCCCAT 61.043 55.000 3.71 0.00 0.00 4.00
953 1025 1.667154 CTCGCGACCTTCATCTCCCA 61.667 60.000 3.71 0.00 0.00 4.37
954 1026 1.066587 CTCGCGACCTTCATCTCCC 59.933 63.158 3.71 0.00 0.00 4.30
955 1027 1.066587 CCTCGCGACCTTCATCTCC 59.933 63.158 3.71 0.00 0.00 3.71
956 1028 0.248702 GTCCTCGCGACCTTCATCTC 60.249 60.000 3.71 0.00 35.23 2.75
957 1029 1.810532 GTCCTCGCGACCTTCATCT 59.189 57.895 3.71 0.00 35.23 2.90
958 1030 4.403976 GTCCTCGCGACCTTCATC 57.596 61.111 3.71 0.00 35.23 2.92
1002 1074 6.150396 TCCGGACACAATTTTGTTTTACAT 57.850 33.333 0.00 0.00 39.91 2.29
1019 1091 0.322546 AAAGCCAAGGACATCCGGAC 60.323 55.000 6.12 0.00 42.08 4.79
1066 1138 1.620822 GATTATGGCATGTGGGTCCC 58.379 55.000 10.98 0.00 0.00 4.46
1078 1150 3.374745 GCCATTTTGAGCACGATTATGG 58.625 45.455 0.00 8.02 35.34 2.74
1146 1218 9.733219 CAGTTTTGTGCCAAAAATCATTAATTT 57.267 25.926 12.69 0.00 39.30 1.82
1147 1219 8.901793 ACAGTTTTGTGCCAAAAATCATTAATT 58.098 25.926 12.69 0.00 35.83 1.40
1148 1220 8.449251 ACAGTTTTGTGCCAAAAATCATTAAT 57.551 26.923 12.69 0.00 35.83 1.40
1149 1221 7.856145 ACAGTTTTGTGCCAAAAATCATTAA 57.144 28.000 12.69 0.00 35.83 1.40
1150 1222 8.417106 TCTACAGTTTTGTGCCAAAAATCATTA 58.583 29.630 12.69 4.87 38.23 1.90
1151 1223 7.271511 TCTACAGTTTTGTGCCAAAAATCATT 58.728 30.769 12.69 4.19 38.23 2.57
1152 1224 6.815089 TCTACAGTTTTGTGCCAAAAATCAT 58.185 32.000 12.69 6.88 38.23 2.45
1153 1225 6.214191 TCTACAGTTTTGTGCCAAAAATCA 57.786 33.333 12.69 4.20 38.23 2.57
1154 1226 6.756542 ACTTCTACAGTTTTGTGCCAAAAATC 59.243 34.615 12.69 4.58 38.23 2.17
1155 1227 6.534793 CACTTCTACAGTTTTGTGCCAAAAAT 59.465 34.615 12.69 9.99 38.23 1.82
1156 1228 5.866633 CACTTCTACAGTTTTGTGCCAAAAA 59.133 36.000 12.69 2.78 38.23 1.94
1157 1229 5.047660 ACACTTCTACAGTTTTGTGCCAAAA 60.048 36.000 8.46 8.46 38.23 2.44
1158 1230 4.461081 ACACTTCTACAGTTTTGTGCCAAA 59.539 37.500 0.00 0.00 38.23 3.28
1159 1231 4.013728 ACACTTCTACAGTTTTGTGCCAA 58.986 39.130 0.00 0.00 38.23 4.52
1160 1232 3.376859 CACACTTCTACAGTTTTGTGCCA 59.623 43.478 0.00 0.00 38.23 4.92
1161 1233 3.625764 TCACACTTCTACAGTTTTGTGCC 59.374 43.478 0.00 0.00 38.23 5.01
1162 1234 4.875544 TCACACTTCTACAGTTTTGTGC 57.124 40.909 0.00 0.00 38.23 4.57
1163 1235 7.641411 CAGAAATCACACTTCTACAGTTTTGTG 59.359 37.037 0.00 0.00 38.23 3.33
1164 1236 7.679638 GCAGAAATCACACTTCTACAGTTTTGT 60.680 37.037 0.00 0.00 41.39 2.83
1165 1237 6.634436 GCAGAAATCACACTTCTACAGTTTTG 59.366 38.462 0.00 0.00 30.92 2.44
1166 1238 6.318648 TGCAGAAATCACACTTCTACAGTTTT 59.681 34.615 0.00 0.00 30.92 2.43
1167 1239 5.822519 TGCAGAAATCACACTTCTACAGTTT 59.177 36.000 0.00 0.00 30.92 2.66
1168 1240 5.368145 TGCAGAAATCACACTTCTACAGTT 58.632 37.500 0.00 0.00 30.92 3.16
1169 1241 4.960938 TGCAGAAATCACACTTCTACAGT 58.039 39.130 0.00 0.00 35.35 3.55
1170 1242 5.929697 TTGCAGAAATCACACTTCTACAG 57.070 39.130 0.00 0.00 29.94 2.74
1171 1243 5.008613 GGTTTGCAGAAATCACACTTCTACA 59.991 40.000 0.00 0.00 31.84 2.74
1172 1244 5.452777 GGTTTGCAGAAATCACACTTCTAC 58.547 41.667 0.00 0.00 31.84 2.59
1173 1245 4.518970 GGGTTTGCAGAAATCACACTTCTA 59.481 41.667 0.00 0.00 31.84 2.10
1174 1246 3.319122 GGGTTTGCAGAAATCACACTTCT 59.681 43.478 0.00 0.00 33.31 2.85
1175 1247 3.319122 AGGGTTTGCAGAAATCACACTTC 59.681 43.478 0.00 0.00 0.00 3.01
1176 1248 3.299503 AGGGTTTGCAGAAATCACACTT 58.700 40.909 0.00 0.00 0.00 3.16
1177 1249 2.949447 AGGGTTTGCAGAAATCACACT 58.051 42.857 0.00 0.00 0.00 3.55
1178 1250 3.057526 GGTAGGGTTTGCAGAAATCACAC 60.058 47.826 0.00 0.00 0.00 3.82
1179 1251 3.153919 GGTAGGGTTTGCAGAAATCACA 58.846 45.455 0.00 0.00 0.00 3.58
1180 1252 2.492088 GGGTAGGGTTTGCAGAAATCAC 59.508 50.000 0.00 0.00 0.00 3.06
1181 1253 2.378547 AGGGTAGGGTTTGCAGAAATCA 59.621 45.455 0.00 0.00 0.00 2.57
1182 1254 3.087370 AGGGTAGGGTTTGCAGAAATC 57.913 47.619 0.00 0.00 0.00 2.17
1183 1255 3.181423 TGAAGGGTAGGGTTTGCAGAAAT 60.181 43.478 0.00 0.00 0.00 2.17
1184 1256 2.175931 TGAAGGGTAGGGTTTGCAGAAA 59.824 45.455 0.00 0.00 0.00 2.52
1185 1257 1.777878 TGAAGGGTAGGGTTTGCAGAA 59.222 47.619 0.00 0.00 0.00 3.02
1186 1258 1.440618 TGAAGGGTAGGGTTTGCAGA 58.559 50.000 0.00 0.00 0.00 4.26
1187 1259 2.286365 TTGAAGGGTAGGGTTTGCAG 57.714 50.000 0.00 0.00 0.00 4.41
1188 1260 2.158385 ACATTGAAGGGTAGGGTTTGCA 60.158 45.455 0.00 0.00 0.00 4.08
1189 1261 2.525368 ACATTGAAGGGTAGGGTTTGC 58.475 47.619 0.00 0.00 0.00 3.68
1190 1262 5.174037 TCTACATTGAAGGGTAGGGTTTG 57.826 43.478 6.88 0.00 38.00 2.93
1191 1263 5.253096 ACATCTACATTGAAGGGTAGGGTTT 59.747 40.000 6.88 0.00 38.00 3.27
1192 1264 4.788617 ACATCTACATTGAAGGGTAGGGTT 59.211 41.667 6.88 0.00 38.00 4.11
1193 1265 4.371681 ACATCTACATTGAAGGGTAGGGT 58.628 43.478 6.88 4.20 38.00 4.34
1194 1266 5.373812 AACATCTACATTGAAGGGTAGGG 57.626 43.478 6.88 3.74 38.00 3.53
1195 1267 7.066284 CAGAAAACATCTACATTGAAGGGTAGG 59.934 40.741 6.88 0.00 38.00 3.18
1196 1268 7.414540 GCAGAAAACATCTACATTGAAGGGTAG 60.415 40.741 0.00 0.00 36.32 3.18
1197 1269 6.374333 GCAGAAAACATCTACATTGAAGGGTA 59.626 38.462 0.00 0.00 36.32 3.69
1198 1270 5.183904 GCAGAAAACATCTACATTGAAGGGT 59.816 40.000 0.00 0.00 36.32 4.34
1199 1271 5.183713 TGCAGAAAACATCTACATTGAAGGG 59.816 40.000 0.00 0.00 36.32 3.95
1200 1272 6.258230 TGCAGAAAACATCTACATTGAAGG 57.742 37.500 0.00 0.00 36.32 3.46
1201 1273 8.752766 AATTGCAGAAAACATCTACATTGAAG 57.247 30.769 0.00 0.00 36.32 3.02
1202 1274 8.358895 TGAATTGCAGAAAACATCTACATTGAA 58.641 29.630 0.00 0.00 36.32 2.69
1203 1275 7.884257 TGAATTGCAGAAAACATCTACATTGA 58.116 30.769 0.00 0.00 36.32 2.57
1214 1286 8.772036 GCCATAGGGACTGAATTGCAGAAAAC 62.772 46.154 0.00 0.00 41.38 2.43
1215 1287 6.843936 GCCATAGGGACTGAATTGCAGAAAA 61.844 44.000 0.00 0.00 41.38 2.29
1216 1288 5.409184 GCCATAGGGACTGAATTGCAGAAA 61.409 45.833 0.00 0.00 41.38 2.52
1217 1289 3.936884 GCCATAGGGACTGAATTGCAGAA 60.937 47.826 0.00 0.00 41.38 3.02
1218 1290 2.421952 GCCATAGGGACTGAATTGCAGA 60.422 50.000 0.00 0.00 41.38 4.26
1219 1291 1.952296 GCCATAGGGACTGAATTGCAG 59.048 52.381 0.00 0.00 41.52 4.41
1220 1292 1.410083 GGCCATAGGGACTGAATTGCA 60.410 52.381 0.00 0.00 40.08 4.08
1221 1293 1.322442 GGCCATAGGGACTGAATTGC 58.678 55.000 0.00 0.00 40.08 3.56
1222 1294 1.496429 AGGGCCATAGGGACTGAATTG 59.504 52.381 6.18 0.00 44.19 2.32
1223 1295 1.496429 CAGGGCCATAGGGACTGAATT 59.504 52.381 6.18 0.00 44.19 2.17
1224 1296 1.143813 CAGGGCCATAGGGACTGAAT 58.856 55.000 6.18 0.00 44.19 2.57
1225 1297 1.635817 GCAGGGCCATAGGGACTGAA 61.636 60.000 18.88 0.00 44.19 3.02
1226 1298 2.072487 GCAGGGCCATAGGGACTGA 61.072 63.158 18.88 0.00 44.19 3.41
1227 1299 2.074948 AGCAGGGCCATAGGGACTG 61.075 63.158 6.18 12.53 44.19 3.51
1228 1300 2.074948 CAGCAGGGCCATAGGGACT 61.075 63.158 6.18 0.00 44.19 3.85
1229 1301 2.512896 CAGCAGGGCCATAGGGAC 59.487 66.667 6.18 0.00 43.93 4.46
1235 1307 0.613012 GAAAGAACCAGCAGGGCCAT 60.613 55.000 6.18 0.00 42.05 4.40
1279 1354 5.854010 TTCTGTAGAAGCCGATATTCAGT 57.146 39.130 0.00 0.00 0.00 3.41
1283 1358 6.222038 TGTCTTTCTGTAGAAGCCGATATT 57.778 37.500 0.00 0.00 35.21 1.28
1285 1360 5.592054 CATGTCTTTCTGTAGAAGCCGATA 58.408 41.667 0.00 0.00 35.21 2.92
1519 1744 1.954362 GATGCGAGCAGGACAGAGGT 61.954 60.000 3.58 0.00 0.00 3.85
1535 1760 3.459027 CGTTGTCGTCGGTGGATG 58.541 61.111 0.00 0.00 0.00 3.51
1574 1799 2.048222 CTCGCGGGCTCTTGTTCA 60.048 61.111 6.13 0.00 0.00 3.18
1644 1869 1.226717 GTCGGTGCAGGAGACGATC 60.227 63.158 0.00 0.00 37.69 3.69
1657 1882 1.255667 ATGAGGGTTAGCACGTCGGT 61.256 55.000 0.00 0.00 0.00 4.69
1687 1912 1.149923 AGAAGGGTCCCTTTGCCAAAT 59.850 47.619 24.58 0.00 44.82 2.32
1688 1913 0.560688 AGAAGGGTCCCTTTGCCAAA 59.439 50.000 24.58 0.00 44.82 3.28
1694 1926 1.778383 TGGCCAGAAGGGTCCCTTT 60.778 57.895 24.58 11.52 44.82 3.11
1717 1949 4.056125 CGTCTCGTCTGCCCAGCA 62.056 66.667 0.00 0.00 36.92 4.41
1727 1959 3.352524 GACACCCTGTCGTCTCGT 58.647 61.111 0.00 0.00 37.67 4.18
1735 1967 3.872603 TGGCGCTTGACACCCTGT 61.873 61.111 7.64 0.00 0.00 4.00
1796 2028 0.731417 CAAAGATCTTGGCGAGCAGG 59.269 55.000 9.17 0.00 0.00 4.85
1879 2111 2.844451 GCAAAAGACGGGCAGTGCA 61.844 57.895 18.61 0.00 32.29 4.57
1977 2241 1.882912 TCAACGCTCTTGCACTTGAT 58.117 45.000 0.00 0.00 39.64 2.57
2010 2274 1.050988 CCCGGGTCCATCTCTGACAT 61.051 60.000 14.18 0.00 34.36 3.06
2097 2417 4.189188 GAAGAGGAGCGCGGCGTA 62.189 66.667 24.46 0.00 0.00 4.42
2235 2586 4.385088 GCATTTCTTCCTGATCTCTCCCTT 60.385 45.833 0.00 0.00 0.00 3.95
2369 2740 5.720202 ACTCACTGTTATTGCTGACGATAA 58.280 37.500 0.00 0.00 30.95 1.75
2415 2786 6.254373 GCGCAGAGATATCGATTCAATGATTA 59.746 38.462 1.71 0.00 0.00 1.75
2444 2815 1.540267 CCCAAATTTAGACCGGCACA 58.460 50.000 0.00 0.00 0.00 4.57
2446 2817 0.968393 GGCCCAAATTTAGACCGGCA 60.968 55.000 0.00 0.00 38.16 5.69
2447 2818 0.968393 TGGCCCAAATTTAGACCGGC 60.968 55.000 0.00 0.00 35.60 6.13
2467 2838 2.420568 CCAATGCTTGGCAGCCGAT 61.421 57.895 7.03 0.00 46.74 4.18
2477 2848 1.826720 ACGCATCCAAATCCAATGCTT 59.173 42.857 5.19 0.00 42.80 3.91
2491 2862 0.807667 ATCTCAGCCGTTCACGCATC 60.808 55.000 0.00 0.00 38.18 3.91
2493 2864 1.005037 AATCTCAGCCGTTCACGCA 60.005 52.632 0.00 0.00 38.18 5.24
2504 2875 1.293924 CTTGGTAGCGGCAATCTCAG 58.706 55.000 1.45 0.00 0.00 3.35
2517 2888 3.775316 GGAAGGAGGAAGATGACTTGGTA 59.225 47.826 0.00 0.00 36.39 3.25
2532 2903 3.414700 GTGTGCGTGCGGAAGGAG 61.415 66.667 0.00 0.00 0.00 3.69
2566 2940 4.469657 CAAGCAGGAGGAGAGATACTACT 58.530 47.826 0.00 0.00 43.48 2.57
2570 2944 1.069978 GGCAAGCAGGAGGAGAGATAC 59.930 57.143 0.00 0.00 0.00 2.24
2571 2945 1.418334 GGCAAGCAGGAGGAGAGATA 58.582 55.000 0.00 0.00 0.00 1.98
2572 2946 1.344191 GGGCAAGCAGGAGGAGAGAT 61.344 60.000 0.00 0.00 0.00 2.75
2573 2947 1.992277 GGGCAAGCAGGAGGAGAGA 60.992 63.158 0.00 0.00 0.00 3.10
2575 2949 1.539869 AAGGGCAAGCAGGAGGAGA 60.540 57.895 0.00 0.00 0.00 3.71
2633 3042 1.004440 GAGCGTCCCTGACAAGCTT 60.004 57.895 0.00 0.00 38.39 3.74
2640 3049 3.838271 GATGGCGAGCGTCCCTGA 61.838 66.667 0.00 0.00 0.00 3.86
2658 3075 2.126424 GACACGACCGGAGCTGTC 60.126 66.667 9.46 11.37 0.00 3.51
2669 3086 4.351938 CAAGGGACGGCGACACGA 62.352 66.667 16.62 0.00 37.61 4.35
2676 3093 3.365265 CTGCAACCAAGGGACGGC 61.365 66.667 0.00 0.00 0.00 5.68
2679 3096 2.564721 GGTGCTGCAACCAAGGGAC 61.565 63.158 6.36 0.00 40.22 4.46
2708 3126 1.067212 GACTACGATGATGCGGGAACT 59.933 52.381 0.00 0.00 35.12 3.01
2724 3142 0.179026 AGAGCTATGACGGCGGACTA 60.179 55.000 13.24 0.00 34.52 2.59
2828 3250 6.073548 CGAGAAAAGCTACAATGGGCTTATAG 60.074 42.308 13.92 3.78 46.35 1.31
2831 3253 3.938963 CGAGAAAAGCTACAATGGGCTTA 59.061 43.478 13.92 0.00 46.35 3.09
2836 3258 3.242870 GGCATCGAGAAAAGCTACAATGG 60.243 47.826 0.00 0.00 0.00 3.16
2838 3260 2.609459 CGGCATCGAGAAAAGCTACAAT 59.391 45.455 0.00 0.00 39.00 2.71
2866 3289 2.686816 CCGTGTAGCCGCCAAAAGG 61.687 63.158 0.00 0.00 0.00 3.11
2933 3359 2.222953 GCAACCACGAAAGCTATAACCG 60.223 50.000 0.00 0.00 0.00 4.44
2938 3364 1.003118 TCCAGCAACCACGAAAGCTAT 59.997 47.619 0.00 0.00 35.19 2.97
2947 3373 3.562635 GCTACGTCCAGCAACCAC 58.437 61.111 5.44 0.00 41.40 4.16
3017 3445 9.545105 AACAACATTTTATGCTTGAATCAAAGA 57.455 25.926 0.00 0.00 0.00 2.52
3027 3455 5.923204 TGGAACCAACAACATTTTATGCTT 58.077 33.333 0.00 0.00 0.00 3.91
3032 3460 4.892934 AGAGCTGGAACCAACAACATTTTA 59.107 37.500 0.00 0.00 0.00 1.52
3064 3492 6.147000 ACCAACTTTTGTTTTTGCTACAACTG 59.853 34.615 0.00 0.00 41.35 3.16
3065 3493 6.227522 ACCAACTTTTGTTTTTGCTACAACT 58.772 32.000 0.00 0.00 41.35 3.16
3085 3514 2.575532 CAAAGTCAGAGCTGGAACCAA 58.424 47.619 0.00 0.00 0.00 3.67
3100 3529 2.035632 TGATTTTTGTCCCGGCAAAGT 58.964 42.857 0.00 0.00 39.20 2.66
3136 3565 3.188460 CGGTGGAAATAGTGACCAACAAG 59.812 47.826 0.00 0.00 40.95 3.16
3140 3576 1.700739 ACCGGTGGAAATAGTGACCAA 59.299 47.619 6.12 0.00 35.40 3.67
3146 3582 1.219935 GGCGACCGGTGGAAATAGT 59.780 57.895 21.99 0.00 0.00 2.12
3188 3631 1.532868 CGACAAGACAAAAGGCTCCTG 59.467 52.381 0.00 0.00 0.00 3.86
3191 3634 3.692791 AAACGACAAGACAAAAGGCTC 57.307 42.857 0.00 0.00 0.00 4.70
3194 3637 5.680479 GTTGAAAACGACAAGACAAAAGG 57.320 39.130 0.00 0.00 36.92 3.11
3212 3655 1.861542 CGGCCGCCTCATTTTGTTGA 61.862 55.000 14.67 0.00 0.00 3.18
3274 3717 3.701542 TCTAGAGCTGGAACCAGTATGTG 59.298 47.826 19.97 9.75 45.24 3.21
3279 3722 3.620966 GCAAATCTAGAGCTGGAACCAGT 60.621 47.826 19.97 8.72 45.24 4.00
3301 3744 6.256975 CCAACATATGATTTTGATGCAACCAG 59.743 38.462 10.38 0.00 0.00 4.00
3310 3753 5.479724 TGCTGGAACCAACATATGATTTTGA 59.520 36.000 10.38 0.00 0.00 2.69
3319 3762 1.922447 AGGGATGCTGGAACCAACATA 59.078 47.619 9.31 0.00 33.49 2.29
3321 3764 0.251297 CAGGGATGCTGGAACCAACA 60.251 55.000 0.00 0.00 0.00 3.33
3324 3767 0.618458 GTACAGGGATGCTGGAACCA 59.382 55.000 0.00 0.00 0.00 3.67
3360 3805 3.066342 GGACTAGCTACATAACTGCGACA 59.934 47.826 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.