Multiple sequence alignment - TraesCS7A01G193400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G193400 chr7A 100.000 6188 0 0 1 6188 150994673 150988486 0.000000e+00 11428
1 TraesCS7A01G193400 chr7D 87.983 4194 314 99 77 4184 151322969 151318880 0.000000e+00 4778
2 TraesCS7A01G193400 chr7D 93.910 821 48 2 4247 5066 151318706 151317887 0.000000e+00 1238
3 TraesCS7A01G193400 chr7D 87.267 966 64 23 5174 6107 151317712 151316774 0.000000e+00 1048
4 TraesCS7A01G193400 chr7D 94.872 117 6 0 1 117 151323075 151322959 3.810000e-42 183
5 TraesCS7A01G193400 chr7D 85.507 138 12 4 5036 5171 151317876 151317745 3.010000e-28 137
6 TraesCS7A01G193400 chr7B 90.134 1794 116 21 1571 3321 113201654 113199879 0.000000e+00 2276
7 TraesCS7A01G193400 chr7B 87.395 1904 154 38 3325 5155 113199781 113197891 0.000000e+00 2108
8 TraesCS7A01G193400 chr7B 88.849 1390 91 27 106 1470 113203076 113201726 0.000000e+00 1650
9 TraesCS7A01G193400 chr7B 88.000 925 67 23 5269 6174 113197605 113196706 0.000000e+00 1053


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G193400 chr7A 150988486 150994673 6187 True 11428.00 11428 100.0000 1 6188 1 chr7A.!!$R1 6187
1 TraesCS7A01G193400 chr7D 151316774 151323075 6301 True 1476.80 4778 89.9078 1 6107 5 chr7D.!!$R1 6106
2 TraesCS7A01G193400 chr7B 113196706 113203076 6370 True 1771.75 2276 88.5945 106 6174 4 chr7B.!!$R1 6068

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 507 0.036952 CGAGCACAGACATCCCTGTT 60.037 55.000 0.00 0.00 44.32 3.16 F
891 928 0.249868 TTTGCTCTGTCCTGTGGTCG 60.250 55.000 0.00 0.00 0.00 4.79 F
1607 1688 0.108138 AGCGAGTGCCTGTATTCACC 60.108 55.000 0.00 0.00 44.31 4.02 F
1871 1952 0.738975 TACCGGAGAGCATCAAGACG 59.261 55.000 9.46 0.00 37.82 4.18 F
1904 1988 1.098050 GCATGATGGTTCTGGTGTCC 58.902 55.000 0.00 0.00 0.00 4.02 F
2718 2824 1.864711 GTGTAGTGCGCAACTCTTTCA 59.135 47.619 14.00 5.86 40.56 2.69 F
3363 3586 1.228337 TCAGCCATGCAACACAGCT 60.228 52.632 0.00 0.00 34.99 4.24 F
4026 4279 0.238553 GCCGAAGTTTGTTCAGAGGC 59.761 55.000 0.00 0.00 36.32 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1454 0.190318 AGCGGCTAGTATTACCCCCT 59.810 55.000 0.00 0.00 0.00 4.79 R
1823 1904 0.472471 TTCTTCACACCCTGTCCACC 59.528 55.000 0.00 0.00 0.00 4.61 R
3114 3243 0.108756 GGCTGACAGTCCGTACCTTC 60.109 60.000 3.99 0.00 0.00 3.46 R
3342 3565 0.520404 CTGTGTTGCATGGCTGAGTC 59.480 55.000 0.00 0.00 0.00 3.36 R
3349 3572 0.885879 ATGTGAGCTGTGTTGCATGG 59.114 50.000 0.00 0.00 34.99 3.66 R
4004 4257 1.532868 CTCTGAACAAACTTCGGCAGG 59.467 52.381 0.00 0.00 0.00 4.85 R
5126 5545 0.594796 GTGAAGGCAAAGCGGTTGTG 60.595 55.000 0.00 2.94 39.63 3.33 R
5646 6246 0.108615 AGCGTTTCATCGACAGGGAG 60.109 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.106708 ACAGCGTGGCTCTTGAGAAA 59.893 50.000 1.30 0.00 36.40 2.52
94 95 1.340502 TGAGCCATCAGACGAGAGAGT 60.341 52.381 0.00 0.00 0.00 3.24
199 233 2.143122 TGAGCCATCAAACGACAGAAC 58.857 47.619 0.00 0.00 30.61 3.01
204 238 3.932710 GCCATCAAACGACAGAACAGATA 59.067 43.478 0.00 0.00 0.00 1.98
205 239 4.572389 GCCATCAAACGACAGAACAGATAT 59.428 41.667 0.00 0.00 0.00 1.63
235 269 0.526662 TCGGAGGAGAAAGAAGACGC 59.473 55.000 0.00 0.00 0.00 5.19
264 298 4.889995 TGAAGTCATCAGAGGATATCACGT 59.110 41.667 4.83 0.00 33.04 4.49
280 314 1.000283 CACGTCTCTTGAGAAGCCAGT 60.000 52.381 12.22 2.21 0.00 4.00
359 393 3.622756 GATGCTGTCATCGAGGCG 58.377 61.111 0.00 0.00 39.63 5.52
401 435 2.112297 GCCACCGACAAACCCTCA 59.888 61.111 0.00 0.00 0.00 3.86
404 438 1.147376 CACCGACAAACCCTCACCA 59.853 57.895 0.00 0.00 0.00 4.17
416 450 1.475169 CCTCACCAGCCACAGAGACA 61.475 60.000 0.00 0.00 0.00 3.41
421 455 0.947244 CCAGCCACAGAGACAAACAC 59.053 55.000 0.00 0.00 0.00 3.32
456 490 2.642254 CGGGACAGTGGTTAGCCGA 61.642 63.158 0.00 0.00 37.67 5.54
463 497 1.292223 GTGGTTAGCCGAGCACAGA 59.708 57.895 12.70 0.00 44.99 3.41
466 500 0.108138 GGTTAGCCGAGCACAGACAT 60.108 55.000 0.00 0.00 0.00 3.06
467 501 1.281899 GTTAGCCGAGCACAGACATC 58.718 55.000 0.00 0.00 0.00 3.06
468 502 0.175760 TTAGCCGAGCACAGACATCC 59.824 55.000 0.00 0.00 0.00 3.51
470 504 3.023949 GCCGAGCACAGACATCCCT 62.024 63.158 0.00 0.00 0.00 4.20
471 505 1.153489 CCGAGCACAGACATCCCTG 60.153 63.158 0.00 0.00 39.93 4.45
473 507 0.036952 CGAGCACAGACATCCCTGTT 60.037 55.000 0.00 0.00 44.32 3.16
474 508 1.204704 CGAGCACAGACATCCCTGTTA 59.795 52.381 0.00 0.00 44.32 2.41
475 509 2.736719 CGAGCACAGACATCCCTGTTAG 60.737 54.545 0.00 0.00 44.32 2.34
476 510 2.234908 GAGCACAGACATCCCTGTTAGT 59.765 50.000 0.00 0.00 44.32 2.24
477 511 2.027745 AGCACAGACATCCCTGTTAGTG 60.028 50.000 0.00 0.00 44.32 2.74
478 512 2.028112 GCACAGACATCCCTGTTAGTGA 60.028 50.000 12.60 0.00 44.32 3.41
479 513 3.854666 CACAGACATCCCTGTTAGTGAG 58.145 50.000 0.00 0.00 44.32 3.51
480 514 2.234908 ACAGACATCCCTGTTAGTGAGC 59.765 50.000 0.00 0.00 44.32 4.26
481 515 2.499289 CAGACATCCCTGTTAGTGAGCT 59.501 50.000 0.00 0.00 35.14 4.09
524 558 3.410508 GGAGAAGGATCGATACTACCGT 58.589 50.000 11.45 0.00 0.00 4.83
525 559 3.819902 GGAGAAGGATCGATACTACCGTT 59.180 47.826 11.45 0.00 0.00 4.44
526 560 4.320348 GGAGAAGGATCGATACTACCGTTG 60.320 50.000 11.45 0.00 0.00 4.10
527 561 4.205587 AGAAGGATCGATACTACCGTTGT 58.794 43.478 11.45 0.00 0.00 3.32
551 585 4.626042 TGATAGTTTTGCGTGCCATTTTT 58.374 34.783 0.00 0.00 0.00 1.94
552 586 5.773575 TGATAGTTTTGCGTGCCATTTTTA 58.226 33.333 0.00 0.00 0.00 1.52
553 587 6.393990 TGATAGTTTTGCGTGCCATTTTTAT 58.606 32.000 0.00 0.00 0.00 1.40
568 602 9.383519 TGCCATTTTTATTTGTTTTTGTCTGTA 57.616 25.926 0.00 0.00 0.00 2.74
596 630 5.596361 TGCTTGAGTTGTAAAATTTGAGGGA 59.404 36.000 0.00 0.00 0.00 4.20
615 650 5.215845 AGGGAGAAAAGAGAGAAGGATAGG 58.784 45.833 0.00 0.00 0.00 2.57
616 651 4.346709 GGGAGAAAAGAGAGAAGGATAGGG 59.653 50.000 0.00 0.00 0.00 3.53
617 652 5.212745 GGAGAAAAGAGAGAAGGATAGGGA 58.787 45.833 0.00 0.00 0.00 4.20
618 653 5.304357 GGAGAAAAGAGAGAAGGATAGGGAG 59.696 48.000 0.00 0.00 0.00 4.30
690 725 3.455469 GGAGGGCAGCATTGTGGC 61.455 66.667 0.00 4.84 42.23 5.01
702 737 3.006859 AGCATTGTGGCCTTTTACCTTTC 59.993 43.478 3.32 0.00 0.00 2.62
833 870 4.261909 CCTGAGCTGTTTCAGAATTGCTTT 60.262 41.667 11.29 0.00 45.95 3.51
845 882 1.619654 ATTGCTTTGCCTGTGTGCTA 58.380 45.000 0.00 0.00 0.00 3.49
855 892 2.300152 GCCTGTGTGCTATGGCTAGATA 59.700 50.000 1.68 0.00 41.92 1.98
860 897 6.183360 CCTGTGTGCTATGGCTAGATAGATAG 60.183 46.154 1.68 0.00 39.59 2.08
861 898 6.485171 TGTGTGCTATGGCTAGATAGATAGA 58.515 40.000 1.68 0.00 39.59 1.98
862 899 7.122048 TGTGTGCTATGGCTAGATAGATAGAT 58.878 38.462 1.68 0.00 39.59 1.98
863 900 8.275040 TGTGTGCTATGGCTAGATAGATAGATA 58.725 37.037 1.68 0.00 39.59 1.98
864 901 9.295825 GTGTGCTATGGCTAGATAGATAGATAT 57.704 37.037 1.68 0.00 39.59 1.63
891 928 0.249868 TTTGCTCTGTCCTGTGGTCG 60.250 55.000 0.00 0.00 0.00 4.79
973 1023 8.970859 AGATATTCAGAACAACCTTCCATAAG 57.029 34.615 0.00 0.00 0.00 1.73
1013 1071 2.299013 CCTAAAACCTCAAAACCCCAGC 59.701 50.000 0.00 0.00 0.00 4.85
1040 1098 4.890306 GGGAGGGAGGGAGGGAGC 62.890 77.778 0.00 0.00 0.00 4.70
1042 1100 4.144727 GAGGGAGGGAGGGAGCGA 62.145 72.222 0.00 0.00 0.00 4.93
1043 1101 4.150454 AGGGAGGGAGGGAGCGAG 62.150 72.222 0.00 0.00 0.00 5.03
1045 1103 4.144727 GGAGGGAGGGAGCGAGGA 62.145 72.222 0.00 0.00 0.00 3.71
1046 1104 2.520741 GAGGGAGGGAGCGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1047 1105 3.024356 AGGGAGGGAGCGAGGAGA 61.024 66.667 0.00 0.00 0.00 3.71
1048 1106 2.520741 GGGAGGGAGCGAGGAGAG 60.521 72.222 0.00 0.00 0.00 3.20
1049 1107 3.223589 GGAGGGAGCGAGGAGAGC 61.224 72.222 0.00 0.00 0.00 4.09
1205 1263 4.176752 GCCCCTCCGATTCGCCTT 62.177 66.667 0.00 0.00 0.00 4.35
1211 1269 1.221414 CTCCGATTCGCCTTCCATTC 58.779 55.000 0.00 0.00 0.00 2.67
1212 1270 0.830648 TCCGATTCGCCTTCCATTCT 59.169 50.000 0.00 0.00 0.00 2.40
1221 1279 2.728007 GCCTTCCATTCTTGCTTAGGT 58.272 47.619 0.00 0.00 0.00 3.08
1222 1280 3.092301 GCCTTCCATTCTTGCTTAGGTT 58.908 45.455 0.00 0.00 0.00 3.50
1240 1299 2.653702 TTTTTGGATTGCGGCGGG 59.346 55.556 9.78 0.00 0.00 6.13
1241 1300 3.581687 TTTTTGGATTGCGGCGGGC 62.582 57.895 9.78 0.00 43.96 6.13
1395 1454 2.391724 GACTGGCTCCACCGTTTCCA 62.392 60.000 0.00 0.00 43.94 3.53
1411 1471 2.410790 TCCAGGGGGTAATACTAGCC 57.589 55.000 0.00 0.00 43.83 3.93
1418 1478 2.516906 GGGTAATACTAGCCGCTCTCT 58.483 52.381 0.00 0.00 36.00 3.10
1440 1501 2.842936 CCCCCTTCGGCTCCGTAT 60.843 66.667 8.28 0.00 40.74 3.06
1455 1516 4.325972 CTCCGTATAACCCTAGTCTCTCC 58.674 52.174 0.00 0.00 0.00 3.71
1456 1517 3.718434 TCCGTATAACCCTAGTCTCTCCA 59.282 47.826 0.00 0.00 0.00 3.86
1457 1518 3.819902 CCGTATAACCCTAGTCTCTCCAC 59.180 52.174 0.00 0.00 0.00 4.02
1458 1519 4.446023 CCGTATAACCCTAGTCTCTCCACT 60.446 50.000 0.00 0.00 0.00 4.00
1460 1521 5.455040 CGTATAACCCTAGTCTCTCCACTCT 60.455 48.000 0.00 0.00 0.00 3.24
1461 1522 3.375647 AACCCTAGTCTCTCCACTCTC 57.624 52.381 0.00 0.00 0.00 3.20
1463 1531 2.508300 ACCCTAGTCTCTCCACTCTCTC 59.492 54.545 0.00 0.00 0.00 3.20
1466 1534 3.971305 CCTAGTCTCTCCACTCTCTCCTA 59.029 52.174 0.00 0.00 0.00 2.94
1469 1537 2.884639 GTCTCTCCACTCTCTCCTATGC 59.115 54.545 0.00 0.00 0.00 3.14
1477 1545 1.000827 CTCTCTCCTATGCGCAATCGT 60.001 52.381 17.11 0.00 38.14 3.73
1478 1546 1.135046 CTCTCCTATGCGCAATCGTG 58.865 55.000 17.11 5.38 38.14 4.35
1501 1569 2.854963 TCTGCATTGAGCTGTGAAAGT 58.145 42.857 0.00 0.00 45.94 2.66
1502 1570 3.216800 TCTGCATTGAGCTGTGAAAGTT 58.783 40.909 0.00 0.00 45.94 2.66
1519 1587 8.134895 TGTGAAAGTTTTGCTATTAGTCCTTTG 58.865 33.333 0.00 0.00 0.00 2.77
1545 1621 2.627699 ACTTGCCAAAGTAATGTGGGTG 59.372 45.455 0.71 0.00 45.01 4.61
1553 1629 6.350949 GCCAAAGTAATGTGGGTGTCAAATAT 60.351 38.462 0.71 0.00 35.28 1.28
1568 1649 5.013079 TGTCAAATATCCCTGCTAGTATGGG 59.987 44.000 9.61 9.61 42.20 4.00
1583 1664 1.211456 ATGGGAAGCCTTCTGAGAGG 58.789 55.000 4.15 2.66 39.93 3.69
1589 1670 4.937193 CCTTCTGAGAGGCTGCAG 57.063 61.111 10.11 10.11 0.00 4.41
1607 1688 0.108138 AGCGAGTGCCTGTATTCACC 60.108 55.000 0.00 0.00 44.31 4.02
1608 1689 1.090052 GCGAGTGCCTGTATTCACCC 61.090 60.000 0.00 0.00 33.90 4.61
1623 1704 2.091541 TCACCCGAGCATTGGATTTTC 58.908 47.619 0.00 0.00 45.05 2.29
1633 1714 3.181493 GCATTGGATTTTCATCGCAGAGT 60.181 43.478 0.00 0.00 43.63 3.24
1636 1717 3.411446 TGGATTTTCATCGCAGAGTGTT 58.589 40.909 0.00 0.00 43.63 3.32
1771 1852 3.379865 TACAGGCGCGTCCAATCCC 62.380 63.158 19.30 5.52 37.29 3.85
1823 1904 4.645535 TCCTGAGAATCACAAAGGAACTG 58.354 43.478 0.00 0.00 42.56 3.16
1843 1924 1.133915 GGTGGACAGGGTGTGAAGAAA 60.134 52.381 0.00 0.00 0.00 2.52
1847 1928 2.147150 GACAGGGTGTGAAGAAAGAGC 58.853 52.381 0.00 0.00 0.00 4.09
1849 1930 2.972713 ACAGGGTGTGAAGAAAGAGCTA 59.027 45.455 0.00 0.00 0.00 3.32
1858 1939 2.438800 AGAAAGAGCTAGCTACCGGA 57.561 50.000 19.38 0.00 0.00 5.14
1866 1947 1.610363 CTAGCTACCGGAGAGCATCA 58.390 55.000 27.20 14.99 42.69 3.07
1871 1952 0.738975 TACCGGAGAGCATCAAGACG 59.261 55.000 9.46 0.00 37.82 4.18
1872 1953 1.880340 CCGGAGAGCATCAAGACGC 60.880 63.158 0.00 0.00 37.82 5.19
1873 1954 1.880340 CGGAGAGCATCAAGACGCC 60.880 63.158 0.00 0.00 37.82 5.68
1897 1981 2.799017 ACACATGTGCATGATGGTTCT 58.201 42.857 25.68 0.00 41.20 3.01
1904 1988 1.098050 GCATGATGGTTCTGGTGTCC 58.902 55.000 0.00 0.00 0.00 4.02
1991 2075 8.429237 AGGGTCTCTTGATATTGAGGTATAAG 57.571 38.462 0.00 0.00 0.00 1.73
2017 2104 3.091545 ACCTGATAAACCAATGTGCCTG 58.908 45.455 0.00 0.00 0.00 4.85
2062 2157 9.405587 GCTTAAATTAGCTTATTTTGACACACA 57.594 29.630 15.25 0.00 38.15 3.72
2101 2196 4.449743 TGTCAAAGTTTATACACGGTGAGC 59.550 41.667 16.29 0.00 0.00 4.26
2165 2260 9.973450 AGCTATAGATTGTACTTATGTCTGTTG 57.027 33.333 3.21 0.00 0.00 3.33
2166 2261 9.967346 GCTATAGATTGTACTTATGTCTGTTGA 57.033 33.333 3.21 0.00 0.00 3.18
2216 2312 7.201902 CCCATTGGCAAGCAACTTTATATCTAA 60.202 37.037 5.96 0.00 0.00 2.10
2240 2336 4.520111 TCAAGTTTTCATCCATGGAGTGTG 59.480 41.667 21.33 13.87 0.00 3.82
2268 2364 6.410540 ACTTGAAAGTCTTCACTTCTCAGTT 58.589 36.000 0.00 0.00 42.45 3.16
2288 2385 6.151648 TCAGTTCTGGGCTTTATCTCATTTTG 59.848 38.462 0.00 0.00 0.00 2.44
2296 2393 6.210185 GGGCTTTATCTCATTTTGGCATAGAT 59.790 38.462 0.00 0.00 0.00 1.98
2300 2398 3.836146 TCTCATTTTGGCATAGATGGGG 58.164 45.455 0.00 0.00 0.00 4.96
2409 2507 6.205464 TCAACAGGAACATCACTGAGATTTTC 59.795 38.462 5.69 5.69 40.89 2.29
2456 2554 5.385198 AGGTAAAGGACATTGACACATTGT 58.615 37.500 0.00 0.00 31.85 2.71
2457 2555 6.539173 AGGTAAAGGACATTGACACATTGTA 58.461 36.000 0.00 0.00 29.78 2.41
2458 2556 6.430000 AGGTAAAGGACATTGACACATTGTAC 59.570 38.462 0.00 0.00 31.12 2.90
2459 2557 6.205853 GGTAAAGGACATTGACACATTGTACA 59.794 38.462 10.27 0.00 32.78 2.90
2568 2674 2.525105 ACAAGGCCATTCCCGTAATT 57.475 45.000 5.01 0.00 34.51 1.40
2619 2725 2.555325 CGACCAAGTTAAAAACCTCCCC 59.445 50.000 0.00 0.00 0.00 4.81
2620 2726 3.568443 GACCAAGTTAAAAACCTCCCCA 58.432 45.455 0.00 0.00 0.00 4.96
2639 2745 4.888326 CCACCATTGGGAAATCTTTGAA 57.112 40.909 7.78 0.00 39.57 2.69
2659 2765 8.492673 TTTGAAAGACCATGTATGTATGTCTC 57.507 34.615 0.00 0.00 0.00 3.36
2660 2766 7.181569 TGAAAGACCATGTATGTATGTCTCA 57.818 36.000 0.00 0.00 0.00 3.27
2666 2772 9.319060 AGACCATGTATGTATGTCTCATTCTAT 57.681 33.333 0.00 0.00 0.00 1.98
2692 2798 4.734398 TTTCTTGCTGTTTGTTGGTGAT 57.266 36.364 0.00 0.00 0.00 3.06
2705 2811 4.314961 TGTTGGTGATTGCTAGTGTAGTG 58.685 43.478 0.00 0.00 0.00 2.74
2718 2824 1.864711 GTGTAGTGCGCAACTCTTTCA 59.135 47.619 14.00 5.86 40.56 2.69
2728 2834 5.231147 TGCGCAACTCTTTCAACATTTTAAC 59.769 36.000 8.16 0.00 0.00 2.01
2735 2841 5.897050 TCTTTCAACATTTTAACAAGCCGT 58.103 33.333 0.00 0.00 0.00 5.68
2741 2847 4.606961 ACATTTTAACAAGCCGTCAAGTG 58.393 39.130 0.00 0.00 0.00 3.16
2763 2869 8.472007 AGTGTATTTTGGACTCCAATGTAAAA 57.528 30.769 11.47 3.07 43.55 1.52
2783 2889 9.720769 TGTAAAAGAAACTAATACTCCTTCCTG 57.279 33.333 0.00 0.00 0.00 3.86
2787 2893 8.850007 AAGAAACTAATACTCCTTCCTGTTTC 57.150 34.615 0.00 0.00 40.99 2.78
2788 2894 7.974504 AGAAACTAATACTCCTTCCTGTTTCA 58.025 34.615 14.69 0.00 42.25 2.69
2821 2946 7.301868 TGATGGGCTTAATTTCTTTGTCTTT 57.698 32.000 0.00 0.00 0.00 2.52
2843 2968 4.911514 TTTACTGGAAAGAACTGTTGCC 57.088 40.909 0.00 0.00 0.00 4.52
2844 2969 2.435372 ACTGGAAAGAACTGTTGCCA 57.565 45.000 0.00 0.00 0.00 4.92
2845 2970 2.949447 ACTGGAAAGAACTGTTGCCAT 58.051 42.857 0.00 0.00 0.00 4.40
2867 2992 6.198966 CCATTTTTCGCTGATAGCATAAAACC 59.801 38.462 10.32 0.00 42.58 3.27
2873 2998 5.758296 TCGCTGATAGCATAAAACCTAAAGG 59.242 40.000 1.45 0.00 42.58 3.11
2877 3002 9.541679 GCTGATAGCATAAAACCTAAAGGTGCC 62.542 44.444 1.55 0.00 44.33 5.01
2896 3021 2.159421 GCCAGATGATGCTGAACAGTTG 60.159 50.000 0.00 0.00 38.14 3.16
2915 3041 4.020543 GTTGTAGTATGGGCCAAATGGAA 58.979 43.478 11.89 0.00 37.39 3.53
2941 3067 9.971922 ATTTGAACATAGAAGTTCCAAGAAAAG 57.028 29.630 0.00 0.00 45.62 2.27
2996 3125 8.400947 CAGATTAATGAAATAGTGACAACAGGG 58.599 37.037 0.00 0.00 0.00 4.45
3053 3182 9.343539 GATGAAAAGGTAACCTAATTATGAGCT 57.656 33.333 0.00 0.00 31.13 4.09
3061 3190 8.522003 GGTAACCTAATTATGAGCTAGGACTAC 58.478 40.741 3.43 4.75 36.48 2.73
3080 3209 9.905713 AGGACTACATTCTTAAGCATTATTCAA 57.094 29.630 0.00 0.00 0.00 2.69
3088 3217 9.826574 ATTCTTAAGCATTATTCAATTGCATGT 57.173 25.926 0.00 0.00 0.00 3.21
3104 3233 9.406828 CAATTGCATGTCCTGATAATAGATTTG 57.593 33.333 0.00 0.00 0.00 2.32
3124 3253 6.576662 TTTGCATAATTTTGAAGGTACGGA 57.423 33.333 0.00 0.00 0.00 4.69
3126 3255 5.250200 TGCATAATTTTGAAGGTACGGACT 58.750 37.500 0.00 0.00 0.00 3.85
3243 3372 7.117285 AGATGACTCACTTACATATGCTCAA 57.883 36.000 1.58 0.00 0.00 3.02
3255 3384 4.080356 ACATATGCTCAAAGGACTGGCTTA 60.080 41.667 1.58 0.00 0.00 3.09
3312 3441 3.498397 GGCATGAGGTATGTAATTCGTGG 59.502 47.826 0.00 0.00 39.08 4.94
3321 3450 6.713450 AGGTATGTAATTCGTGGACTTGTTTT 59.287 34.615 0.00 0.00 0.00 2.43
3323 3452 5.427036 TGTAATTCGTGGACTTGTTTTCC 57.573 39.130 0.00 0.00 0.00 3.13
3332 3555 6.766944 TCGTGGACTTGTTTTCCATTAGTTAA 59.233 34.615 0.00 0.00 45.05 2.01
3363 3586 1.228337 TCAGCCATGCAACACAGCT 60.228 52.632 0.00 0.00 34.99 4.24
3383 3606 7.536622 CACAGCTCACATTACATTCTTTTCTTC 59.463 37.037 0.00 0.00 0.00 2.87
3457 3680 2.094442 GCCTGGAGTGAGTTACAGAGAC 60.094 54.545 0.00 0.00 32.86 3.36
3467 3690 5.409826 GTGAGTTACAGAGACCATTTTGAGG 59.590 44.000 0.00 0.00 0.00 3.86
3478 3701 7.175641 AGAGACCATTTTGAGGAACTATTTGTG 59.824 37.037 0.00 0.00 41.55 3.33
3483 3706 6.707440 TTTTGAGGAACTATTTGTGCAGAA 57.293 33.333 0.00 0.00 41.55 3.02
3510 3733 5.016173 ACATAAGCTGTTAAGGCCAATCAA 58.984 37.500 5.01 0.00 32.90 2.57
3519 3742 7.111247 TGTTAAGGCCAATCAATTTCCTATG 57.889 36.000 5.01 0.00 0.00 2.23
3609 3833 1.795162 CGTGGAAAATCATCTTGCGGC 60.795 52.381 0.00 0.00 0.00 6.53
3667 3891 5.567138 AAGGTATACTTCAAAGCATGTGC 57.433 39.130 2.25 0.00 36.50 4.57
3683 3907 2.303175 TGTGCAACCAGGTTTAGAACC 58.697 47.619 0.44 1.60 44.82 3.62
3736 3960 7.712204 TTACATATCGGGAGAATGTATGCTA 57.288 36.000 7.21 0.00 45.37 3.49
3745 3969 5.482175 GGGAGAATGTATGCTACTATGGTCT 59.518 44.000 0.00 0.00 0.00 3.85
3751 3975 7.695480 ATGTATGCTACTATGGTCTACTCAG 57.305 40.000 0.00 0.00 0.00 3.35
3756 3980 6.420638 TGCTACTATGGTCTACTCAGTGTAA 58.579 40.000 0.00 0.00 0.00 2.41
3795 4020 8.635765 ATTGAATTCAACACTAGCTAGGAAAA 57.364 30.769 22.71 11.26 38.86 2.29
3830 4055 5.814705 GGATAAGACAGAACCTCACAATCAG 59.185 44.000 0.00 0.00 0.00 2.90
3909 4161 8.824159 AGTTTAGATTGATGACATATTCTCCG 57.176 34.615 0.00 0.00 0.00 4.63
3917 4169 6.867550 TGATGACATATTCTCCGCTATAAGG 58.132 40.000 0.00 0.00 0.00 2.69
3921 4173 6.127338 TGACATATTCTCCGCTATAAGGATGG 60.127 42.308 0.00 0.00 37.13 3.51
3940 4192 6.015180 AGGATGGCAATTCGTATTTATGCAAT 60.015 34.615 0.00 0.00 38.73 3.56
3941 4193 6.646240 GGATGGCAATTCGTATTTATGCAATT 59.354 34.615 0.00 0.00 38.73 2.32
3969 4221 7.226720 CAGTTTGGTAGTACAAGAAGTTGTGAT 59.773 37.037 2.06 0.00 46.75 3.06
3973 4225 6.154445 GGTAGTACAAGAAGTTGTGATTCGA 58.846 40.000 2.06 0.00 46.75 3.71
3974 4226 6.089150 GGTAGTACAAGAAGTTGTGATTCGAC 59.911 42.308 2.06 0.00 46.75 4.20
3975 4227 5.844004 AGTACAAGAAGTTGTGATTCGACT 58.156 37.500 0.00 0.00 46.75 4.18
4004 4257 5.689383 TTCTTTGCAGTCATGTAGGTTTC 57.311 39.130 0.00 0.00 0.00 2.78
4026 4279 0.238553 GCCGAAGTTTGTTCAGAGGC 59.761 55.000 0.00 0.00 36.32 4.70
4112 4365 2.297033 CCACCAGTTCCACAGAATTTGG 59.703 50.000 7.40 7.40 41.67 3.28
4245 4586 5.467063 CCTGAAGAAGTGTGTTAAGAAGGTC 59.533 44.000 0.00 0.00 0.00 3.85
4285 4648 2.097466 CAGCGGGGTTGACACATATTTC 59.903 50.000 0.00 0.00 0.00 2.17
4306 4669 2.419990 CGGTCTTTGCACATATCCTGGA 60.420 50.000 0.00 0.00 0.00 3.86
4347 4710 1.069204 TGATCTCAAGGTATGGAGCGC 59.931 52.381 0.00 0.00 0.00 5.92
4574 4938 2.218603 TCGAGCTCTATGCATACGTCA 58.781 47.619 12.85 0.00 45.94 4.35
4632 4997 9.666626 TTTGGAATAACTTGTACAATTACAACG 57.333 29.630 14.18 2.78 42.23 4.10
4662 5027 8.149647 AGATTGAGAATACTAGCAGAATCCAAG 58.850 37.037 0.00 0.00 0.00 3.61
4683 5048 1.673033 GGCTACGTGCTTGATGACACT 60.673 52.381 0.00 0.00 42.39 3.55
4793 5158 1.926561 TCTCTGTCGGCATTTCATCG 58.073 50.000 0.00 0.00 0.00 3.84
4809 5174 7.218014 GCATTTCATCGTTTATCGTGAATTTCA 59.782 33.333 0.00 0.00 38.36 2.69
4890 5255 1.217244 CGGGTTCCCGTACTTGGAG 59.783 63.158 20.65 0.00 43.86 3.86
4920 5285 7.334844 TGAACGAAATCTATAGCTCTGAAGA 57.665 36.000 0.00 0.00 0.00 2.87
4934 5299 5.874261 AGCTCTGAAGAAGAATGTAGCTTTC 59.126 40.000 0.00 0.00 29.57 2.62
4968 5333 6.316890 GTGTAGTTTTGTTCTCCTTTGTACCA 59.683 38.462 0.00 0.00 0.00 3.25
4976 5341 1.063070 TCCTTTGTACCACAGGCCCA 61.063 55.000 0.00 0.00 31.92 5.36
5003 5368 1.802508 GCTGTTTCCAAACCTGTGTGC 60.803 52.381 0.00 0.00 38.11 4.57
5015 5392 1.217001 CTGTGTGCAGCAAACGTAGA 58.783 50.000 11.28 0.00 35.77 2.59
5018 5395 2.616376 TGTGTGCAGCAAACGTAGATTT 59.384 40.909 11.28 0.00 0.00 2.17
5046 5463 8.221100 CGGGATCGTATATATTTTGTTGTTCTG 58.779 37.037 0.00 0.00 0.00 3.02
5061 5478 8.445275 TTGTTGTTCTGTGTTGTATTGTAGAT 57.555 30.769 0.00 0.00 0.00 1.98
5068 5485 7.258441 TCTGTGTTGTATTGTAGATCAGTAGC 58.742 38.462 0.00 0.00 0.00 3.58
5069 5486 7.122799 TCTGTGTTGTATTGTAGATCAGTAGCT 59.877 37.037 0.00 0.00 0.00 3.32
5085 5504 0.670546 AGCTGGAATGTTCGTCGTGG 60.671 55.000 0.00 0.00 0.00 4.94
5087 5506 0.948623 CTGGAATGTTCGTCGTGGCA 60.949 55.000 0.00 0.00 0.00 4.92
5123 5542 8.434392 AGGGACAAGTCTGTAACTATTTTGTTA 58.566 33.333 0.00 0.00 37.17 2.41
5171 5594 5.192927 TGGACACTTGTGATTTCTCTTTGT 58.807 37.500 7.83 0.00 0.00 2.83
5172 5595 5.066375 TGGACACTTGTGATTTCTCTTTGTG 59.934 40.000 7.83 0.00 0.00 3.33
5194 5767 4.515191 TGAGACATGGTTTTCTGCAACTAC 59.485 41.667 0.00 0.00 0.00 2.73
5198 5771 4.022068 ACATGGTTTTCTGCAACTACATGG 60.022 41.667 15.52 0.00 38.89 3.66
5214 5787 3.424703 ACATGGCCATATAAGATGGTGC 58.575 45.455 20.30 0.00 41.17 5.01
5255 5829 9.034544 ACAAGAAAGAAATGCATTTCAAAGTAC 57.965 29.630 39.58 26.82 46.50 2.73
5291 5887 2.168106 AGTTGCAGGCAAAATGTCACAA 59.832 40.909 8.47 0.00 37.70 3.33
5299 5896 2.406024 GCAAAATGTCACAAGCACATCG 59.594 45.455 0.00 0.00 33.12 3.84
5346 5944 2.340210 TGAAAGCCTGTTGCACTGTA 57.660 45.000 0.00 0.00 44.83 2.74
5453 6053 4.436451 CGATGTTGCGATATATGCTGCATT 60.436 41.667 21.56 10.97 37.17 3.56
5522 6122 3.883489 AGGCTTCAAGTCAAACTAACCAC 59.117 43.478 0.00 0.00 0.00 4.16
5527 6127 6.459573 GCTTCAAGTCAAACTAACCACAATCA 60.460 38.462 0.00 0.00 0.00 2.57
5536 6136 8.158132 TCAAACTAACCACAATCACCTACATAA 58.842 33.333 0.00 0.00 0.00 1.90
5540 6140 8.107095 ACTAACCACAATCACCTACATAATTGT 58.893 33.333 0.00 0.00 41.67 2.71
5563 6163 9.475620 TTGTGAAGATTACTTACATCTCCTCTA 57.524 33.333 0.00 0.00 36.39 2.43
5646 6246 3.508840 CCGCCACCGAGCATTTCC 61.509 66.667 0.00 0.00 36.29 3.13
5661 6261 3.609853 CATTTCCTCCCTGTCGATGAAA 58.390 45.455 0.00 0.00 33.01 2.69
5686 6286 1.229209 AGAAGCTCCCGGTCCTTGA 60.229 57.895 0.00 0.00 0.00 3.02
5694 6294 1.221840 CCGGTCCTTGATCACCAGG 59.778 63.158 7.07 7.07 32.33 4.45
5699 6299 1.067295 TCCTTGATCACCAGGCACTT 58.933 50.000 8.39 0.00 34.60 3.16
5757 6357 0.812549 TGTAATCGTAGGCTGCGTCA 59.187 50.000 23.83 15.41 0.00 4.35
5880 6481 1.317613 GTTCAGTGCCATGACAACCA 58.682 50.000 0.00 0.00 0.00 3.67
5894 6496 2.485814 GACAACCAAGAGATCAACTGCC 59.514 50.000 0.00 0.00 0.00 4.85
5912 6514 4.816385 ACTGCCATGGAATAATTGTACTCG 59.184 41.667 18.40 0.00 0.00 4.18
5954 6558 5.588246 TGAGTATGTTTTTCAGTTCAGTGCA 59.412 36.000 0.00 0.00 0.00 4.57
5955 6559 6.064846 AGTATGTTTTTCAGTTCAGTGCAG 57.935 37.500 0.00 0.00 0.00 4.41
5957 6561 6.765989 AGTATGTTTTTCAGTTCAGTGCAGTA 59.234 34.615 0.00 0.00 0.00 2.74
5958 6562 5.888691 TGTTTTTCAGTTCAGTGCAGTAA 57.111 34.783 0.00 0.00 0.00 2.24
5962 6566 8.289618 TGTTTTTCAGTTCAGTGCAGTAATATC 58.710 33.333 0.00 0.00 0.00 1.63
5963 6567 6.985188 TTTCAGTTCAGTGCAGTAATATCC 57.015 37.500 0.00 0.00 0.00 2.59
6019 6635 9.193806 AGCATATGGAAATCTGAAACTATTTGT 57.806 29.630 4.56 0.00 0.00 2.83
6061 6677 5.488341 TGCCTCAAGGACTGATTAAACTAC 58.512 41.667 0.00 0.00 37.39 2.73
6110 6727 9.926158 ACATATCTCAAATTTTACACAATTGCA 57.074 25.926 5.05 0.00 0.00 4.08
6115 6732 8.386606 TCTCAAATTTTACACAATTGCAACAAC 58.613 29.630 0.00 0.00 0.00 3.32
6116 6733 8.032952 TCAAATTTTACACAATTGCAACAACA 57.967 26.923 0.00 0.00 0.00 3.33
6117 6734 8.173775 TCAAATTTTACACAATTGCAACAACAG 58.826 29.630 0.00 0.00 0.00 3.16
6118 6735 7.608308 AATTTTACACAATTGCAACAACAGT 57.392 28.000 0.00 0.00 0.00 3.55
6119 6736 7.608308 ATTTTACACAATTGCAACAACAGTT 57.392 28.000 0.00 0.00 0.00 3.16
6120 6737 7.426929 TTTTACACAATTGCAACAACAGTTT 57.573 28.000 0.00 0.00 0.00 2.66
6121 6738 8.534333 TTTTACACAATTGCAACAACAGTTTA 57.466 26.923 0.00 0.00 0.00 2.01
6125 6753 6.128688 ACACAATTGCAACAACAGTTTAACAC 60.129 34.615 0.00 0.00 0.00 3.32
6145 6773 3.728718 CACTGCAATAACGTTTGGTTGAC 59.271 43.478 5.91 7.06 39.75 3.18
6162 6790 3.712287 CCAAGGGATGGGCCAAAC 58.288 61.111 11.89 8.04 46.27 2.93
6164 6792 0.835543 CCAAGGGATGGGCCAAACAA 60.836 55.000 11.89 0.00 46.27 2.83
6165 6793 1.278537 CAAGGGATGGGCCAAACAAT 58.721 50.000 11.89 0.00 38.95 2.71
6166 6794 2.465813 CAAGGGATGGGCCAAACAATA 58.534 47.619 11.89 0.00 38.95 1.90
6167 6795 2.431782 CAAGGGATGGGCCAAACAATAG 59.568 50.000 11.89 0.00 38.95 1.73
6168 6796 0.752658 GGGATGGGCCAAACAATAGC 59.247 55.000 11.89 0.00 38.95 2.97
6169 6797 1.484038 GGATGGGCCAAACAATAGCA 58.516 50.000 11.89 0.00 36.34 3.49
6170 6798 2.041701 GGATGGGCCAAACAATAGCAT 58.958 47.619 11.89 0.00 36.34 3.79
6173 6801 4.100808 GGATGGGCCAAACAATAGCATAAA 59.899 41.667 11.89 0.00 36.34 1.40
6174 6802 5.221702 GGATGGGCCAAACAATAGCATAAAT 60.222 40.000 11.89 0.00 36.34 1.40
6175 6803 6.014669 GGATGGGCCAAACAATAGCATAAATA 60.015 38.462 11.89 0.00 36.34 1.40
6176 6804 6.798427 TGGGCCAAACAATAGCATAAATAA 57.202 33.333 2.13 0.00 0.00 1.40
6177 6805 6.815089 TGGGCCAAACAATAGCATAAATAAG 58.185 36.000 2.13 0.00 0.00 1.73
6178 6806 6.382570 TGGGCCAAACAATAGCATAAATAAGT 59.617 34.615 2.13 0.00 0.00 2.24
6179 6807 7.093112 TGGGCCAAACAATAGCATAAATAAGTT 60.093 33.333 2.13 0.00 0.00 2.66
6180 6808 7.438160 GGGCCAAACAATAGCATAAATAAGTTC 59.562 37.037 4.39 0.00 0.00 3.01
6181 6809 7.978975 GGCCAAACAATAGCATAAATAAGTTCA 59.021 33.333 0.00 0.00 0.00 3.18
6182 6810 9.023967 GCCAAACAATAGCATAAATAAGTTCAG 57.976 33.333 0.00 0.00 0.00 3.02
6183 6811 9.023967 CCAAACAATAGCATAAATAAGTTCAGC 57.976 33.333 0.00 0.00 0.00 4.26
6184 6812 9.571810 CAAACAATAGCATAAATAAGTTCAGCA 57.428 29.630 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.395173 AAGGTTTGTCAGCGGTTGGT 60.395 50.000 0.00 0.00 0.00 3.67
62 63 2.674380 GGCTCAGCACCCACCTTG 60.674 66.667 0.00 0.00 0.00 3.61
63 64 2.490270 GATGGCTCAGCACCCACCTT 62.490 60.000 0.00 0.00 33.17 3.50
89 90 4.679373 TGGCTTATCAAGATCCACTCTC 57.321 45.455 0.00 0.00 31.03 3.20
94 95 4.041321 CCTCTGATGGCTTATCAAGATCCA 59.959 45.833 5.85 0.00 44.84 3.41
199 233 4.480541 CTCCGATGGTTTCTCGATATCTG 58.519 47.826 0.34 0.00 38.38 2.90
204 238 1.683917 CTCCTCCGATGGTTTCTCGAT 59.316 52.381 0.00 0.00 38.38 3.59
205 239 1.103803 CTCCTCCGATGGTTTCTCGA 58.896 55.000 0.00 0.00 38.38 4.04
235 269 2.564504 TCCTCTGATGACTTCACAGTGG 59.435 50.000 16.04 16.04 42.76 4.00
259 293 1.270826 CTGGCTTCTCAAGAGACGTGA 59.729 52.381 0.00 0.00 37.14 4.35
264 298 2.298446 CAGTGACTGGCTTCTCAAGAGA 59.702 50.000 4.28 0.00 35.27 3.10
280 314 3.038280 TCCTCTGAAGGTTTGTCAGTGA 58.962 45.455 5.34 0.00 43.82 3.41
401 435 0.546122 TGTTTGTCTCTGTGGCTGGT 59.454 50.000 0.00 0.00 0.00 4.00
404 438 2.158769 TGATGTGTTTGTCTCTGTGGCT 60.159 45.455 0.00 0.00 0.00 4.75
456 490 2.027745 CACTAACAGGGATGTCTGTGCT 60.028 50.000 0.00 0.00 46.17 4.40
463 497 2.906389 TGAAGCTCACTAACAGGGATGT 59.094 45.455 0.00 0.00 0.00 3.06
466 500 2.609747 ACTGAAGCTCACTAACAGGGA 58.390 47.619 0.00 0.00 35.84 4.20
467 501 4.537135 TTACTGAAGCTCACTAACAGGG 57.463 45.455 0.00 0.00 35.84 4.45
468 502 5.297547 TGTTTACTGAAGCTCACTAACAGG 58.702 41.667 0.00 0.00 35.84 4.00
470 504 5.914033 ACTGTTTACTGAAGCTCACTAACA 58.086 37.500 0.00 0.00 0.00 2.41
471 505 6.846325 AACTGTTTACTGAAGCTCACTAAC 57.154 37.500 0.00 0.00 0.00 2.34
472 506 7.859325 AAAACTGTTTACTGAAGCTCACTAA 57.141 32.000 6.16 0.00 0.00 2.24
473 507 7.859325 AAAAACTGTTTACTGAAGCTCACTA 57.141 32.000 6.16 0.00 0.00 2.74
474 508 6.759497 AAAAACTGTTTACTGAAGCTCACT 57.241 33.333 6.16 0.00 0.00 3.41
475 509 7.431376 GGTTAAAAACTGTTTACTGAAGCTCAC 59.569 37.037 6.16 0.00 0.00 3.51
476 510 7.477494 GGTTAAAAACTGTTTACTGAAGCTCA 58.523 34.615 6.16 0.00 0.00 4.26
477 511 6.631636 CGGTTAAAAACTGTTTACTGAAGCTC 59.368 38.462 6.16 0.00 33.03 4.09
478 512 6.459161 CCGGTTAAAAACTGTTTACTGAAGCT 60.459 38.462 6.16 0.00 35.99 3.74
479 513 5.684184 CCGGTTAAAAACTGTTTACTGAAGC 59.316 40.000 6.16 7.19 35.99 3.86
480 514 6.038492 TCCCGGTTAAAAACTGTTTACTGAAG 59.962 38.462 6.16 2.65 35.99 3.02
481 515 5.884792 TCCCGGTTAAAAACTGTTTACTGAA 59.115 36.000 6.16 0.00 35.99 3.02
524 558 3.181486 TGGCACGCAAAACTATCAAACAA 60.181 39.130 0.00 0.00 0.00 2.83
525 559 2.359214 TGGCACGCAAAACTATCAAACA 59.641 40.909 0.00 0.00 0.00 2.83
526 560 3.006659 TGGCACGCAAAACTATCAAAC 57.993 42.857 0.00 0.00 0.00 2.93
527 561 3.932545 ATGGCACGCAAAACTATCAAA 57.067 38.095 0.00 0.00 0.00 2.69
596 630 5.215845 CCTCCCTATCCTTCTCTCTTTTCT 58.784 45.833 0.00 0.00 0.00 2.52
615 650 6.596888 GTGAGTAAACCAAGTAAATACCCTCC 59.403 42.308 0.00 0.00 0.00 4.30
616 651 7.392418 AGTGAGTAAACCAAGTAAATACCCTC 58.608 38.462 0.00 0.00 0.00 4.30
617 652 7.016858 TGAGTGAGTAAACCAAGTAAATACCCT 59.983 37.037 0.00 0.00 0.00 4.34
618 653 7.118825 GTGAGTGAGTAAACCAAGTAAATACCC 59.881 40.741 0.00 0.00 0.00 3.69
690 725 8.943909 AATATCTGTCGTAGAAAGGTAAAAGG 57.056 34.615 0.00 0.00 41.37 3.11
777 814 5.220453 GCACAAACAAATCTGAACCAAACTG 60.220 40.000 0.00 0.00 0.00 3.16
778 815 4.869861 GCACAAACAAATCTGAACCAAACT 59.130 37.500 0.00 0.00 0.00 2.66
855 892 8.263640 ACAGAGCAAACACTCAAATATCTATCT 58.736 33.333 0.00 0.00 39.26 1.98
860 897 5.645497 AGGACAGAGCAAACACTCAAATATC 59.355 40.000 0.00 0.00 39.26 1.63
861 898 5.413833 CAGGACAGAGCAAACACTCAAATAT 59.586 40.000 0.00 0.00 39.26 1.28
862 899 4.756642 CAGGACAGAGCAAACACTCAAATA 59.243 41.667 0.00 0.00 39.26 1.40
863 900 3.567164 CAGGACAGAGCAAACACTCAAAT 59.433 43.478 0.00 0.00 39.26 2.32
864 901 2.945008 CAGGACAGAGCAAACACTCAAA 59.055 45.455 0.00 0.00 39.26 2.69
867 904 1.869767 CACAGGACAGAGCAAACACTC 59.130 52.381 0.00 0.00 36.91 3.51
870 907 0.546122 ACCACAGGACAGAGCAAACA 59.454 50.000 0.00 0.00 0.00 2.83
891 928 1.627879 CTGCTGAGCTTCGAGTCTTC 58.372 55.000 5.83 0.00 0.00 2.87
943 981 8.206867 TGGAAGGTTGTTCTGAATATCTATCTG 58.793 37.037 0.00 0.00 0.00 2.90
973 1023 6.628919 TTAGGTTGTTCTAGCACTTTTTCC 57.371 37.500 0.00 0.00 0.00 3.13
974 1024 7.434307 GGTTTTAGGTTGTTCTAGCACTTTTTC 59.566 37.037 0.00 0.00 0.00 2.29
980 1030 5.061179 TGAGGTTTTAGGTTGTTCTAGCAC 58.939 41.667 0.00 0.00 0.00 4.40
981 1031 5.298989 TGAGGTTTTAGGTTGTTCTAGCA 57.701 39.130 0.00 0.00 0.00 3.49
982 1032 6.628919 TTTGAGGTTTTAGGTTGTTCTAGC 57.371 37.500 0.00 0.00 0.00 3.42
1029 1087 2.520741 CTCCTCGCTCCCTCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
1043 1101 4.959596 GCGCCATCGGAGCTCTCC 62.960 72.222 14.64 5.85 44.91 3.71
1188 1246 4.176752 AAGGCGAATCGGAGGGGC 62.177 66.667 4.35 0.00 0.00 5.80
1192 1250 1.202580 AGAATGGAAGGCGAATCGGAG 60.203 52.381 4.35 0.00 0.00 4.63
1200 1258 1.672881 CCTAAGCAAGAATGGAAGGCG 59.327 52.381 0.00 0.00 0.00 5.52
1240 1299 4.329545 TTCCACACCTGCGAGGGC 62.330 66.667 7.06 0.00 40.58 5.19
1241 1300 2.046892 CTTCCACACCTGCGAGGG 60.047 66.667 7.06 0.00 40.58 4.30
1242 1301 2.743928 GCTTCCACACCTGCGAGG 60.744 66.667 0.00 1.16 42.49 4.63
1245 1304 1.572085 CTTCTGCTTCCACACCTGCG 61.572 60.000 0.00 0.00 0.00 5.18
1285 1344 1.517475 GGCGTCCTTCTTCTCGAGC 60.517 63.158 7.81 0.00 0.00 5.03
1390 1449 3.050835 GGCTAGTATTACCCCCTGGAAA 58.949 50.000 0.00 0.00 34.81 3.13
1395 1454 0.190318 AGCGGCTAGTATTACCCCCT 59.810 55.000 0.00 0.00 0.00 4.79
1432 1493 3.752747 GAGAGACTAGGGTTATACGGAGC 59.247 52.174 0.00 0.00 0.00 4.70
1434 1495 3.718434 TGGAGAGACTAGGGTTATACGGA 59.282 47.826 0.00 0.00 0.00 4.69
1440 1501 4.113085 AGAGAGTGGAGAGACTAGGGTTA 58.887 47.826 0.00 0.00 0.00 2.85
1455 1516 2.402305 GATTGCGCATAGGAGAGAGTG 58.598 52.381 12.75 0.00 0.00 3.51
1456 1517 1.000827 CGATTGCGCATAGGAGAGAGT 60.001 52.381 12.75 0.00 0.00 3.24
1457 1518 1.000827 ACGATTGCGCATAGGAGAGAG 60.001 52.381 12.75 0.00 42.48 3.20
1458 1519 1.032794 ACGATTGCGCATAGGAGAGA 58.967 50.000 12.75 0.00 42.48 3.10
1460 1521 0.875908 GCACGATTGCGCATAGGAGA 60.876 55.000 12.75 0.00 39.50 3.71
1461 1522 1.566563 GCACGATTGCGCATAGGAG 59.433 57.895 12.75 2.75 39.50 3.69
1478 1546 1.092348 TCACAGCTCAATGCAGATGC 58.908 50.000 0.00 0.00 45.94 3.91
1494 1562 7.595130 CCAAAGGACTAATAGCAAAACTTTCAC 59.405 37.037 0.00 0.00 0.00 3.18
1501 1569 3.767131 GCCCCAAAGGACTAATAGCAAAA 59.233 43.478 0.00 0.00 38.24 2.44
1502 1570 3.245443 TGCCCCAAAGGACTAATAGCAAA 60.245 43.478 0.00 0.00 38.24 3.68
1545 1621 5.248477 TCCCATACTAGCAGGGATATTTGAC 59.752 44.000 12.17 0.00 46.42 3.18
1589 1670 1.090052 GGGTGAATACAGGCACTCGC 61.090 60.000 0.00 0.00 34.60 5.03
1607 1688 2.855953 GCGATGAAAATCCAATGCTCGG 60.856 50.000 0.00 0.00 0.00 4.63
1608 1689 2.223317 TGCGATGAAAATCCAATGCTCG 60.223 45.455 0.00 0.00 0.00 5.03
1623 1704 0.792640 GGACACAACACTCTGCGATG 59.207 55.000 0.00 0.00 0.00 3.84
1633 1714 1.202758 AGCCAATCGAAGGACACAACA 60.203 47.619 11.12 0.00 0.00 3.33
1636 1717 0.321564 CCAGCCAATCGAAGGACACA 60.322 55.000 11.12 0.00 0.00 3.72
1771 1852 0.798776 ACATTTTGCTCCTCTTCGCG 59.201 50.000 0.00 0.00 0.00 5.87
1823 1904 0.472471 TTCTTCACACCCTGTCCACC 59.528 55.000 0.00 0.00 0.00 4.61
1833 1914 4.177783 GGTAGCTAGCTCTTTCTTCACAC 58.822 47.826 23.26 9.49 0.00 3.82
1836 1917 2.427453 CCGGTAGCTAGCTCTTTCTTCA 59.573 50.000 23.26 0.00 0.00 3.02
1843 1924 0.536460 GCTCTCCGGTAGCTAGCTCT 60.536 60.000 23.26 0.00 37.01 4.09
1847 1928 1.610363 TGATGCTCTCCGGTAGCTAG 58.390 55.000 24.97 6.91 40.73 3.42
1849 1930 0.749649 CTTGATGCTCTCCGGTAGCT 59.250 55.000 24.97 14.60 40.73 3.32
1858 1939 1.134965 GTACTGGCGTCTTGATGCTCT 60.135 52.381 13.57 1.15 0.00 4.09
1866 1947 1.795768 CACATGTGTACTGGCGTCTT 58.204 50.000 18.03 0.00 0.00 3.01
1871 1952 1.452110 TCATGCACATGTGTACTGGC 58.548 50.000 26.01 11.86 39.72 4.85
1872 1953 2.356695 CCATCATGCACATGTGTACTGG 59.643 50.000 26.01 22.51 39.72 4.00
1873 1954 3.011818 ACCATCATGCACATGTGTACTG 58.988 45.455 26.01 19.64 39.72 2.74
1897 1981 2.200092 GGCCCCTTTTGGACACCA 59.800 61.111 0.00 0.00 44.07 4.17
1922 2006 2.158986 AGCTAGTCTGGCTATGTGCAAG 60.159 50.000 9.28 0.00 44.07 4.01
1954 2038 0.531200 GAGACCCTACGGTGTCCTTG 59.469 60.000 0.00 0.00 44.89 3.61
1991 2075 4.675510 CACATTGGTTTATCAGGTCATGC 58.324 43.478 0.00 0.00 0.00 4.06
2080 2175 3.998341 GGCTCACCGTGTATAAACTTTGA 59.002 43.478 0.00 0.00 0.00 2.69
2164 2259 7.385267 CAACAGGGTTGAATTCCAATTATTCA 58.615 34.615 2.27 0.00 39.54 2.57
2165 2260 6.313658 GCAACAGGGTTGAATTCCAATTATTC 59.686 38.462 12.90 0.00 37.08 1.75
2166 2261 6.172630 GCAACAGGGTTGAATTCCAATTATT 58.827 36.000 12.90 0.00 37.08 1.40
2167 2262 5.338300 GGCAACAGGGTTGAATTCCAATTAT 60.338 40.000 12.90 0.00 37.08 1.28
2168 2263 4.020662 GGCAACAGGGTTGAATTCCAATTA 60.021 41.667 12.90 0.00 37.08 1.40
2172 2268 1.337118 GGCAACAGGGTTGAATTCCA 58.663 50.000 12.90 0.00 0.00 3.53
2216 2312 5.184479 CACACTCCATGGATGAAAACTTGAT 59.816 40.000 16.63 0.00 0.00 2.57
2240 2336 5.884771 AGAAGTGAAGACTTTCAAGTTTGC 58.115 37.500 0.00 0.00 44.49 3.68
2268 2364 3.701040 GCCAAAATGAGATAAAGCCCAGA 59.299 43.478 0.00 0.00 0.00 3.86
2288 2385 1.683385 GCAGAAAACCCCATCTATGCC 59.317 52.381 0.00 0.00 0.00 4.40
2296 2393 1.070445 CATGCAAAGCAGAAAACCCCA 59.930 47.619 0.00 0.00 43.65 4.96
2300 2398 5.406175 TGAATTAGCATGCAAAGCAGAAAAC 59.594 36.000 21.98 8.61 43.65 2.43
2441 2539 9.117145 CATTACTTTGTACAATGTGTCAATGTC 57.883 33.333 28.20 0.00 33.12 3.06
2500 2606 4.018506 TCCCATGGCTTCAAGAGAAACATA 60.019 41.667 6.09 0.00 33.02 2.29
2503 2609 2.751806 CTCCCATGGCTTCAAGAGAAAC 59.248 50.000 6.09 0.00 32.35 2.78
2568 2674 7.523293 TTCTATTTTGAATGGCAGTTTCTCA 57.477 32.000 0.00 0.00 0.00 3.27
2619 2725 5.928264 GTCTTTCAAAGATTTCCCAATGGTG 59.072 40.000 2.39 0.00 40.18 4.17
2620 2726 5.012046 GGTCTTTCAAAGATTTCCCAATGGT 59.988 40.000 2.39 0.00 40.18 3.55
2639 2745 8.027524 AGAATGAGACATACATACATGGTCTT 57.972 34.615 0.00 0.00 0.00 3.01
2659 2765 9.199982 ACAAACAGCAAGAAAAATGATAGAATG 57.800 29.630 0.00 0.00 0.00 2.67
2660 2766 9.768662 AACAAACAGCAAGAAAAATGATAGAAT 57.231 25.926 0.00 0.00 0.00 2.40
2666 2772 5.350914 CACCAACAAACAGCAAGAAAAATGA 59.649 36.000 0.00 0.00 0.00 2.57
2669 2775 4.887748 TCACCAACAAACAGCAAGAAAAA 58.112 34.783 0.00 0.00 0.00 1.94
2670 2776 4.527509 TCACCAACAAACAGCAAGAAAA 57.472 36.364 0.00 0.00 0.00 2.29
2677 2783 2.514205 AGCAATCACCAACAAACAGC 57.486 45.000 0.00 0.00 0.00 4.40
2692 2798 1.144969 GTTGCGCACTACACTAGCAA 58.855 50.000 11.12 0.00 44.24 3.91
2705 2811 5.231147 TGTTAAAATGTTGAAAGAGTTGCGC 59.769 36.000 0.00 0.00 0.00 6.09
2718 2824 5.040635 CACTTGACGGCTTGTTAAAATGTT 58.959 37.500 0.00 0.00 0.00 2.71
2728 2834 3.252215 TCCAAAATACACTTGACGGCTTG 59.748 43.478 0.00 0.00 0.00 4.01
2763 2869 7.974504 TGAAACAGGAAGGAGTATTAGTTTCT 58.025 34.615 13.61 0.00 42.25 2.52
2779 2885 8.393259 AGCCCATCATATTATTATGAAACAGGA 58.607 33.333 10.51 0.00 45.54 3.86
2797 2922 6.916360 AAGACAAAGAAATTAAGCCCATCA 57.084 33.333 0.00 0.00 0.00 3.07
2821 2946 4.707448 TGGCAACAGTTCTTTCCAGTAAAA 59.293 37.500 0.00 0.00 46.17 1.52
2838 2963 2.854185 GCTATCAGCGAAAAATGGCAAC 59.146 45.455 0.00 0.00 0.00 4.17
2840 2965 2.090760 TGCTATCAGCGAAAAATGGCA 58.909 42.857 0.00 0.00 46.26 4.92
2841 2966 2.849880 TGCTATCAGCGAAAAATGGC 57.150 45.000 0.00 0.00 46.26 4.40
2843 2968 6.974622 AGGTTTTATGCTATCAGCGAAAAATG 59.025 34.615 10.54 0.00 46.26 2.32
2844 2969 7.100458 AGGTTTTATGCTATCAGCGAAAAAT 57.900 32.000 10.54 3.49 46.26 1.82
2845 2970 6.509418 AGGTTTTATGCTATCAGCGAAAAA 57.491 33.333 10.54 8.50 46.26 1.94
2867 2992 2.617308 CAGCATCATCTGGCACCTTTAG 59.383 50.000 0.00 0.00 0.00 1.85
2873 2998 1.400846 CTGTTCAGCATCATCTGGCAC 59.599 52.381 0.00 0.00 34.91 5.01
2877 3002 4.934001 ACTACAACTGTTCAGCATCATCTG 59.066 41.667 0.00 0.00 35.46 2.90
2884 3009 3.868369 GCCCATACTACAACTGTTCAGCA 60.868 47.826 0.00 0.00 0.00 4.41
2896 3021 5.600696 CAAATTCCATTTGGCCCATACTAC 58.399 41.667 0.00 0.00 44.44 2.73
2915 3041 9.971922 CTTTTCTTGGAACTTCTATGTTCAAAT 57.028 29.630 9.18 0.00 45.74 2.32
3047 3176 6.325028 TGCTTAAGAATGTAGTCCTAGCTCAT 59.675 38.462 6.67 0.00 0.00 2.90
3080 3209 7.231925 TGCAAATCTATTATCAGGACATGCAAT 59.768 33.333 0.00 0.00 33.85 3.56
3104 3233 5.123344 ACAGTCCGTACCTTCAAAATTATGC 59.877 40.000 0.00 0.00 0.00 3.14
3114 3243 0.108756 GGCTGACAGTCCGTACCTTC 60.109 60.000 3.99 0.00 0.00 3.46
3124 3253 1.557099 TCACCGAATAGGCTGACAGT 58.443 50.000 3.99 0.00 46.52 3.55
3126 3255 1.899814 ACTTCACCGAATAGGCTGACA 59.100 47.619 0.00 0.00 46.52 3.58
3243 3372 6.976934 TCAAAGAATTTTAAGCCAGTCCTT 57.023 33.333 0.00 0.00 35.03 3.36
3332 3555 4.951715 TGCATGGCTGAGTCAAAAATCTAT 59.048 37.500 0.00 0.00 0.00 1.98
3342 3565 0.520404 CTGTGTTGCATGGCTGAGTC 59.480 55.000 0.00 0.00 0.00 3.36
3344 3567 1.211969 GCTGTGTTGCATGGCTGAG 59.788 57.895 0.00 0.00 0.00 3.35
3345 3568 1.228337 AGCTGTGTTGCATGGCTGA 60.228 52.632 0.00 0.00 34.99 4.26
3349 3572 0.885879 ATGTGAGCTGTGTTGCATGG 59.114 50.000 0.00 0.00 34.99 3.66
3363 3586 9.658799 CCTAGAGAAGAAAAGAATGTAATGTGA 57.341 33.333 0.00 0.00 0.00 3.58
3383 3606 4.163441 TCTCCATCTCACTGACCTAGAG 57.837 50.000 0.00 0.00 0.00 2.43
3418 3641 2.852449 AGGCAAGATATCCTTCCCAACA 59.148 45.455 0.00 0.00 35.04 3.33
3457 3680 5.782047 TGCACAAATAGTTCCTCAAAATGG 58.218 37.500 0.00 0.00 0.00 3.16
3478 3701 3.904136 AACAGCTTATGTGTGTTCTGC 57.096 42.857 0.00 0.00 43.00 4.26
3483 3706 3.081804 GGCCTTAACAGCTTATGTGTGT 58.918 45.455 0.00 0.00 43.00 3.72
3519 3742 8.447833 TCACACATGACGAATTTAGAAATAACC 58.552 33.333 0.00 0.00 0.00 2.85
3534 3758 8.397906 ACCTTCAAATAATAATCACACATGACG 58.602 33.333 0.00 0.00 37.79 4.35
3548 3772 9.897744 CGCATACAATTATCACCTTCAAATAAT 57.102 29.630 0.00 0.00 0.00 1.28
3609 3833 9.423061 TCATGAGTAATTACAATATCCATGTCG 57.577 33.333 17.65 0.00 32.95 4.35
3709 3933 8.758829 AGCATACATTCTCCCGATATGTAAATA 58.241 33.333 0.00 0.00 38.02 1.40
3713 3937 6.890268 AGTAGCATACATTCTCCCGATATGTA 59.110 38.462 0.00 0.00 46.26 2.29
3736 3960 5.511363 AGCTTACACTGAGTAGACCATAGT 58.489 41.667 0.00 0.00 33.43 2.12
3768 3992 8.948631 TTCCTAGCTAGTGTTGAATTCAATAG 57.051 34.615 23.05 19.77 38.24 1.73
3771 3995 8.635765 ATTTTCCTAGCTAGTGTTGAATTCAA 57.364 30.769 16.91 16.91 0.00 2.69
3801 4026 5.544176 TGTGAGGTTCTGTCTTATCCTCTTT 59.456 40.000 10.22 0.00 43.34 2.52
3803 4028 4.678256 TGTGAGGTTCTGTCTTATCCTCT 58.322 43.478 10.22 0.00 43.34 3.69
3805 4030 5.485353 TGATTGTGAGGTTCTGTCTTATCCT 59.515 40.000 0.00 0.00 0.00 3.24
3809 4034 5.540337 AGACTGATTGTGAGGTTCTGTCTTA 59.460 40.000 6.04 0.00 42.44 2.10
3830 4055 6.864342 TGTATAACTAAACTGCTCCTCAGAC 58.136 40.000 0.00 0.00 45.72 3.51
3909 4161 6.743575 AATACGAATTGCCATCCTTATAGC 57.256 37.500 0.00 0.00 0.00 2.97
3917 4169 7.642071 AATTGCATAAATACGAATTGCCATC 57.358 32.000 0.00 0.00 32.39 3.51
3921 4173 8.560576 ACTGTAATTGCATAAATACGAATTGC 57.439 30.769 0.00 0.00 0.00 3.56
3940 4192 8.042515 ACAACTTCTTGTACTACCAAACTGTAA 58.957 33.333 0.00 0.00 38.95 2.41
3941 4193 7.493320 CACAACTTCTTGTACTACCAAACTGTA 59.507 37.037 0.00 0.00 38.66 2.74
3949 4201 6.089150 GTCGAATCACAACTTCTTGTACTACC 59.911 42.308 0.00 0.00 38.66 3.18
4004 4257 1.532868 CTCTGAACAAACTTCGGCAGG 59.467 52.381 0.00 0.00 0.00 4.85
4245 4586 2.486982 CTGTCAGTTCCCTGCATTTCAG 59.513 50.000 0.00 0.00 42.49 3.02
4285 4648 1.942657 CCAGGATATGTGCAAAGACCG 59.057 52.381 0.00 0.00 0.00 4.79
4574 4938 4.037923 GTCGGATTTTCATAACCATGGCAT 59.962 41.667 13.04 3.38 32.61 4.40
4632 4997 5.595885 TCTGCTAGTATTCTCAATCTGCAC 58.404 41.667 0.00 0.00 0.00 4.57
4683 5048 5.222079 TCTGTGTAGCAAGATACAAACCA 57.778 39.130 0.00 0.00 37.41 3.67
4809 5174 1.306141 TTCTGATCTCCCCGCCTGT 60.306 57.895 0.00 0.00 0.00 4.00
4881 5246 2.094182 TCGTTCATGAGGCTCCAAGTAC 60.094 50.000 12.86 5.02 0.00 2.73
4890 5255 5.233988 AGCTATAGATTTCGTTCATGAGGC 58.766 41.667 3.21 0.00 0.00 4.70
4920 5285 3.589288 AGGTCTGGGAAAGCTACATTCTT 59.411 43.478 0.00 0.00 0.00 2.52
4934 5299 3.208747 ACAAAACTACACAGGTCTGGG 57.791 47.619 0.00 0.00 40.54 4.45
4968 5333 2.203998 AGCTACCAGTGGGCCTGT 60.204 61.111 15.21 0.00 39.74 4.00
4976 5341 2.174854 AGGTTTGGAAACAGCTACCAGT 59.825 45.455 4.71 0.00 44.54 4.00
5015 5392 7.681939 ACAAAATATATACGATCCCGCAAAT 57.318 32.000 0.00 0.00 39.95 2.32
5018 5395 5.992829 ACAACAAAATATATACGATCCCGCA 59.007 36.000 0.00 0.00 39.95 5.69
5046 5463 6.477033 CCAGCTACTGATCTACAATACAACAC 59.523 42.308 0.00 0.00 32.44 3.32
5061 5478 2.415491 CGACGAACATTCCAGCTACTGA 60.415 50.000 0.00 0.00 32.44 3.41
5068 5485 0.948623 TGCCACGACGAACATTCCAG 60.949 55.000 0.00 0.00 0.00 3.86
5069 5486 1.069935 TGCCACGACGAACATTCCA 59.930 52.632 0.00 0.00 0.00 3.53
5085 5504 3.873952 GACTTGTCCCTAGATTCATGTGC 59.126 47.826 0.00 0.00 0.00 4.57
5087 5506 4.780021 ACAGACTTGTCCCTAGATTCATGT 59.220 41.667 0.00 0.00 29.46 3.21
5098 5517 7.506328 AACAAAATAGTTACAGACTTGTCCC 57.494 36.000 0.00 0.00 39.86 4.46
5123 5542 1.539827 GAAGGCAAAGCGGTTGTGTAT 59.460 47.619 0.00 0.00 39.63 2.29
5125 5544 1.034838 TGAAGGCAAAGCGGTTGTGT 61.035 50.000 0.00 0.00 39.63 3.72
5126 5545 0.594796 GTGAAGGCAAAGCGGTTGTG 60.595 55.000 0.00 2.94 39.63 3.33
5164 5587 5.755813 CAGAAAACCATGTCTCACAAAGAG 58.244 41.667 0.00 0.00 46.14 2.85
5165 5588 4.036734 GCAGAAAACCATGTCTCACAAAGA 59.963 41.667 0.00 0.00 0.00 2.52
5171 5594 3.554934 AGTTGCAGAAAACCATGTCTCA 58.445 40.909 0.00 0.00 0.00 3.27
5172 5595 4.515191 TGTAGTTGCAGAAAACCATGTCTC 59.485 41.667 0.00 0.00 0.00 3.36
5194 5767 3.693807 AGCACCATCTTATATGGCCATG 58.306 45.455 29.04 11.63 42.82 3.66
5198 5771 5.278660 CCAGAAAAGCACCATCTTATATGGC 60.279 44.000 3.93 0.00 42.82 4.40
5255 5829 6.371548 TGCCTGCAACTTTACTCTGTATTAAG 59.628 38.462 0.00 0.00 0.00 1.85
5266 5840 4.209080 GTGACATTTTGCCTGCAACTTTAC 59.791 41.667 3.64 0.00 35.46 2.01
5291 5887 2.738846 GTCAACATTCTCACGATGTGCT 59.261 45.455 0.00 0.00 32.98 4.40
5299 5896 2.227388 CTGGGCTTGTCAACATTCTCAC 59.773 50.000 0.00 0.00 0.00 3.51
5306 5903 2.203480 GCCCTGGGCTTGTCAACA 60.203 61.111 30.42 0.00 46.69 3.33
5328 5926 2.878406 TCTTACAGTGCAACAGGCTTTC 59.122 45.455 0.00 0.00 45.15 2.62
5346 5944 9.579932 GGATAGTTTTTGGATCTGGATTATCTT 57.420 33.333 0.00 0.00 0.00 2.40
5453 6053 0.401738 AGCTAAAAGTGCTGGCTGGA 59.598 50.000 0.00 0.00 39.56 3.86
5536 6136 8.986991 AGAGGAGATGTAAGTAATCTTCACAAT 58.013 33.333 0.00 0.00 34.50 2.71
5540 6140 8.282982 AGGTAGAGGAGATGTAAGTAATCTTCA 58.717 37.037 0.00 0.00 34.50 3.02
5563 6163 1.272313 TGCTTCTCGGTAGGTGTAGGT 60.272 52.381 0.00 0.00 0.00 3.08
5595 6195 6.072838 ACAGTTCTTATTGATCACAGCTGTTG 60.073 38.462 18.94 13.06 30.50 3.33
5596 6196 6.000219 ACAGTTCTTATTGATCACAGCTGTT 59.000 36.000 18.94 2.95 30.50 3.16
5597 6197 5.555017 ACAGTTCTTATTGATCACAGCTGT 58.445 37.500 15.25 15.25 0.00 4.40
5598 6198 6.312487 CAACAGTTCTTATTGATCACAGCTG 58.688 40.000 13.48 13.48 0.00 4.24
5599 6199 5.106396 GCAACAGTTCTTATTGATCACAGCT 60.106 40.000 0.00 0.00 0.00 4.24
5600 6200 5.091431 GCAACAGTTCTTATTGATCACAGC 58.909 41.667 0.00 0.00 0.00 4.40
5601 6201 6.312487 CAGCAACAGTTCTTATTGATCACAG 58.688 40.000 0.00 0.00 0.00 3.66
5602 6202 5.181811 CCAGCAACAGTTCTTATTGATCACA 59.818 40.000 0.00 0.00 0.00 3.58
5603 6203 5.392380 CCCAGCAACAGTTCTTATTGATCAC 60.392 44.000 0.00 0.00 0.00 3.06
5604 6204 4.701651 CCCAGCAACAGTTCTTATTGATCA 59.298 41.667 0.00 0.00 0.00 2.92
5605 6205 4.943705 TCCCAGCAACAGTTCTTATTGATC 59.056 41.667 0.00 0.00 0.00 2.92
5606 6206 4.702131 GTCCCAGCAACAGTTCTTATTGAT 59.298 41.667 0.00 0.00 0.00 2.57
5646 6246 0.108615 AGCGTTTCATCGACAGGGAG 60.109 55.000 0.00 0.00 0.00 4.30
5686 6286 1.632409 AGATGACAAGTGCCTGGTGAT 59.368 47.619 0.00 0.00 0.00 3.06
5694 6294 0.874390 TCGGCAAAGATGACAAGTGC 59.126 50.000 0.00 0.00 32.33 4.40
5699 6299 1.202758 ACTGGTTCGGCAAAGATGACA 60.203 47.619 0.00 0.00 32.33 3.58
5843 6443 7.566709 CACTGAACATTCTTAACATTTTTGGC 58.433 34.615 0.00 0.00 0.00 4.52
5880 6481 3.726557 TTCCATGGCAGTTGATCTCTT 57.273 42.857 6.96 0.00 0.00 2.85
5894 6496 9.787532 AAACAATTCGAGTACAATTATTCCATG 57.212 29.630 0.00 0.00 0.00 3.66
5912 6514 7.649306 ACATACTCAGTTCAGCAAAAACAATTC 59.351 33.333 0.00 0.00 0.00 2.17
5948 6552 4.692625 GCTATGTGGGATATTACTGCACTG 59.307 45.833 0.00 0.00 0.00 3.66
5954 6558 7.380423 AACAAGAGCTATGTGGGATATTACT 57.620 36.000 5.46 0.00 0.00 2.24
5955 6559 9.726438 ATAAACAAGAGCTATGTGGGATATTAC 57.274 33.333 5.46 0.00 0.00 1.89
5962 6566 7.649306 GCAAATTATAAACAAGAGCTATGTGGG 59.351 37.037 5.46 0.00 0.00 4.61
5963 6567 8.190122 TGCAAATTATAAACAAGAGCTATGTGG 58.810 33.333 5.46 0.00 0.00 4.17
6018 6634 5.992217 AGGCATCGGAAATCTGAAAGTATAC 59.008 40.000 0.00 0.00 34.49 1.47
6019 6635 6.174720 AGGCATCGGAAATCTGAAAGTATA 57.825 37.500 0.00 0.00 34.49 1.47
6020 6636 5.041191 AGGCATCGGAAATCTGAAAGTAT 57.959 39.130 0.00 0.00 34.49 2.12
6021 6637 4.081142 TGAGGCATCGGAAATCTGAAAGTA 60.081 41.667 0.00 0.00 34.49 2.24
6022 6638 3.274288 GAGGCATCGGAAATCTGAAAGT 58.726 45.455 0.00 0.00 34.49 2.66
6023 6639 3.273434 TGAGGCATCGGAAATCTGAAAG 58.727 45.455 0.00 0.00 34.49 2.62
6024 6640 3.348647 TGAGGCATCGGAAATCTGAAA 57.651 42.857 0.00 0.00 34.49 2.69
6025 6641 3.273434 CTTGAGGCATCGGAAATCTGAA 58.727 45.455 0.00 0.00 34.49 3.02
6026 6642 2.420547 CCTTGAGGCATCGGAAATCTGA 60.421 50.000 0.00 0.00 35.43 3.27
6031 6647 0.984230 AGTCCTTGAGGCATCGGAAA 59.016 50.000 0.00 0.00 34.44 3.13
6035 6651 2.322355 AATCAGTCCTTGAGGCATCG 57.678 50.000 0.00 0.00 39.68 3.84
6087 6704 9.755804 TGTTGCAATTGTGTAAAATTTGAGATA 57.244 25.926 0.59 0.00 30.59 1.98
6116 6733 5.974751 CCAAACGTTATTGCAGTGTTAAACT 59.025 36.000 0.00 0.00 40.93 2.66
6117 6734 5.744819 ACCAAACGTTATTGCAGTGTTAAAC 59.255 36.000 0.00 0.00 0.00 2.01
6118 6735 5.892568 ACCAAACGTTATTGCAGTGTTAAA 58.107 33.333 0.00 0.00 0.00 1.52
6119 6736 5.502153 ACCAAACGTTATTGCAGTGTTAA 57.498 34.783 0.00 0.00 0.00 2.01
6120 6737 5.066117 TCAACCAAACGTTATTGCAGTGTTA 59.934 36.000 0.00 0.00 31.77 2.41
6121 6738 4.109050 CAACCAAACGTTATTGCAGTGTT 58.891 39.130 0.00 0.00 31.77 3.32
6125 6753 3.243234 TGGTCAACCAAACGTTATTGCAG 60.243 43.478 0.00 0.00 44.35 4.41
6145 6773 0.835543 TTGTTTGGCCCATCCCTTGG 60.836 55.000 0.00 0.00 46.00 3.61
6155 6783 7.978975 TGAACTTATTTATGCTATTGTTTGGCC 59.021 33.333 0.00 0.00 0.00 5.36
6157 6785 9.023967 GCTGAACTTATTTATGCTATTGTTTGG 57.976 33.333 0.00 0.00 0.00 3.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.