AutoCloner

Multiple sequence alignment - TraesCS7A01G192900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G192900	chr7A	100.000	3338	0	0	1	3338	150879565	150882902	0.000000e+00	6165.0
1	TraesCS7A01G192900	chr7B	89.506	2287	122	54	633	2878	113095314	113097523	0.000000e+00	2785.0
2	TraesCS7A01G192900	chr7B	93.404	470	22	4	2878	3338	113097562	113098031	0.000000e+00	688.0
3	TraesCS7A01G192900	chr7B	82.792	616	68	25	37	635	481889211	481888617	1.780000e-142	516.0
4	TraesCS7A01G192900	chr7D	89.419	1446	74	30	1466	2858	150934674	150936093	0.000000e+00	1749.0
5	TraesCS7A01G192900	chr7D	90.832	829	45	16	633	1457	150933832	150934633	0.000000e+00	1081.0
6	TraesCS7A01G192900	chr7D	94.456	469	18	2	2878	3338	150936146	150936614	0.000000e+00	715.0
7	TraesCS7A01G192900	chr7D	81.656	616	84	21	31	636	612934806	612935402	5.010000e-133	484.0
8	TraesCS7A01G192900	chr4B	85.881	1459	97	44	1463	2878	402984473	402985865	0.000000e+00	1452.0
9	TraesCS7A01G192900	chr4B	93.191	470	23	4	2878	3338	402985904	402986373	0.000000e+00	682.0
10	TraesCS7A01G192900	chr4B	86.481	540	36	19	633	1170	402983939	402984443	2.910000e-155	558.0
11	TraesCS7A01G192900	chr1D	84.026	626	64	19	31	635	262025673	262026283	1.340000e-158	569.0
12	TraesCS7A01G192900	chr6D	84.902	563	59	12	86	635	321949538	321948989	2.260000e-151	545.0
13	TraesCS7A01G192900	chr6D	82.748	626	73	23	36	636	333806892	333806277	2.950000e-145	525.0
14	TraesCS7A01G192900	chr6D	82.154	622	85	21	31	635	420194378	420194990	8.260000e-141	510.0
15	TraesCS7A01G192900	chr3B	82.594	609	80	19	37	634	163715184	163714591	6.390000e-142	514.0
16	TraesCS7A01G192900	chr3B	79.341	334	47	11	61	383	798131567	798131889	7.250000e-52	215.0
17	TraesCS7A01G192900	chr5B	82.372	624	77	17	40	645	429428273	429427665	2.300000e-141	512.0
18	TraesCS7A01G192900	chr5D	81.848	617	84	20	37	631	542654056	542653446	8.320000e-136	494.0
19	TraesCS7A01G192900	chr5D	84.937	239	27	8	63	292	514157211	514156973	2.000000e-57	233.0
20	TraesCS7A01G192900	chr1B	85.274	292	30	11	56	337	674872512	674872224	4.210000e-74	289.0
21	TraesCS7A01G192900	chr2B	86.585	82	11	0	1	82	734912018	734912099	1.280000e-14	91.6

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G192900	chr7A	150879565	150882902	3337	False	6165.000000	6165	100.000000	1	3338	1	chr7A.!!$F1	3337
1	TraesCS7A01G192900	chr7B	113095314	113098031	2717	False	1736.500000	2785	91.455000	633	3338	2	chr7B.!!$F1	2705
2	TraesCS7A01G192900	chr7B	481888617	481889211	594	True	516.000000	516	82.792000	37	635	1	chr7B.!!$R1	598
3	TraesCS7A01G192900	chr7D	150933832	150936614	2782	False	1181.666667	1749	91.569000	633	3338	3	chr7D.!!$F2	2705
4	TraesCS7A01G192900	chr7D	612934806	612935402	596	False	484.000000	484	81.656000	31	636	1	chr7D.!!$F1	605
5	TraesCS7A01G192900	chr4B	402983939	402986373	2434	False	897.333333	1452	88.517667	633	3338	3	chr4B.!!$F1	2705
6	TraesCS7A01G192900	chr1D	262025673	262026283	610	False	569.000000	569	84.026000	31	635	1	chr1D.!!$F1	604
7	TraesCS7A01G192900	chr6D	321948989	321949538	549	True	545.000000	545	84.902000	86	635	1	chr6D.!!$R1	549
8	TraesCS7A01G192900	chr6D	333806277	333806892	615	True	525.000000	525	82.748000	36	636	1	chr6D.!!$R2	600
9	TraesCS7A01G192900	chr6D	420194378	420194990	612	False	510.000000	510	82.154000	31	635	1	chr6D.!!$F1	604
10	TraesCS7A01G192900	chr3B	163714591	163715184	593	True	514.000000	514	82.594000	37	634	1	chr3B.!!$R1	597
11	TraesCS7A01G192900	chr5B	429427665	429428273	608	True	512.000000	512	82.372000	40	645	1	chr5B.!!$R1	605
12	TraesCS7A01G192900	chr5D	542653446	542654056	610	True	494.000000	494	81.848000	37	631	1	chr5D.!!$R2	594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
945	1030	0.042131	TCGACTCCCAATACCACCCT	59.958	55.0	0.0	0.0	0.00	4.34	F
960	1045	0.102481	ACCCTCGTCCAATCGAATCG	59.898	55.0	0.0	0.0	39.34	3.34	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2094	2248	0.739462	CCGCTTCCATCACGTAAGCA	60.739	55.0	17.53	0.0	44.62	3.91	R
2519	2696	2.733820	CTCGCATCATTTGAGAGTGC	57.266	50.0	0.00	0.0	44.54	4.40	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
48	49	4.457496	CACGCCCGTGCCTCTCAT	62.457	66.667	7.95	0.00	39.39	2.90
54	55	0.250234	CCCGTGCCTCTCATGAAAGA	59.750	55.000	0.00	0.00	33.49	2.52
61	62	4.037923	GTGCCTCTCATGAAAGAAAAACCA	59.962	41.667	0.00	0.00	0.00	3.67
292	313	3.425972	GTGACTCTCGCGAAAGAAAAG	57.574	47.619	17.91	6.60	0.00	2.27
373	395	2.923605	AAACCGTGACTTTTGCGAAA	57.076	40.000	0.00	0.00	0.00	3.46
374	396	2.468532	AACCGTGACTTTTGCGAAAG	57.531	45.000	22.51	22.51	46.17	2.62
449	486	2.353406	CGAAAAGCTAAGGAAGACCGGA	60.353	50.000	9.46	0.00	41.83	5.14
556	637	3.189010	TTCAGAGCGCGACACGTGA	62.189	57.895	25.01	1.05	46.11	4.35
570	651	2.034179	ACACGTGACGAATGACTGAGAA	59.966	45.455	25.01	0.00	0.00	2.87
631	712	1.725164	GCGCTCGTTAACTAGTTGCTT	59.275	47.619	18.56	0.00	0.00	3.91
718	799	2.819608	TCGGCCTGATTTTTCTTCCTTG	59.180	45.455	0.00	0.00	0.00	3.61
723	806	4.037923	GCCTGATTTTTCTTCCTTGTCACA	59.962	41.667	0.00	0.00	0.00	3.58
724	807	5.279156	GCCTGATTTTTCTTCCTTGTCACAT	60.279	40.000	0.00	0.00	0.00	3.21
781	864	1.997874	CCTGACCCTTCCCCTCCAG	60.998	68.421	0.00	0.00	0.00	3.86
940	1025	1.957877	CCTCTCTCGACTCCCAATACC	59.042	57.143	0.00	0.00	0.00	2.73
943	1028	1.409427	CTCTCGACTCCCAATACCACC	59.591	57.143	0.00	0.00	0.00	4.61
945	1030	0.042131	TCGACTCCCAATACCACCCT	59.958	55.000	0.00	0.00	0.00	4.34
952	1037	0.616371	CCAATACCACCCTCGTCCAA	59.384	55.000	0.00	0.00	0.00	3.53
954	1039	2.561569	CAATACCACCCTCGTCCAATC	58.438	52.381	0.00	0.00	0.00	2.67
955	1040	0.750850	ATACCACCCTCGTCCAATCG	59.249	55.000	0.00	0.00	0.00	3.34
956	1041	0.323633	TACCACCCTCGTCCAATCGA	60.324	55.000	0.00	0.00	38.19	3.59
957	1042	1.189524	ACCACCCTCGTCCAATCGAA	61.190	55.000	0.00	0.00	39.34	3.71
958	1043	0.178068	CCACCCTCGTCCAATCGAAT	59.822	55.000	0.00	0.00	39.34	3.34
959	1044	1.571919	CACCCTCGTCCAATCGAATC	58.428	55.000	0.00	0.00	39.34	2.52
960	1045	0.102481	ACCCTCGTCCAATCGAATCG	59.898	55.000	0.00	0.00	39.34	3.34
961	1046	1.215655	CCCTCGTCCAATCGAATCGC	61.216	60.000	0.00	0.00	39.34	4.58
962	1047	1.540607	CCTCGTCCAATCGAATCGCG	61.541	60.000	0.00	0.00	39.34	5.87
963	1048	2.135283	CTCGTCCAATCGAATCGCGC	62.135	60.000	0.00	0.00	39.34	6.86
964	1049	2.626455	GTCCAATCGAATCGCGCC	59.374	61.111	0.00	0.00	40.61	6.53
965	1050	2.587753	TCCAATCGAATCGCGCCC	60.588	61.111	0.00	0.00	40.61	6.13
966	1051	2.588877	CCAATCGAATCGCGCCCT	60.589	61.111	0.00	0.00	40.61	5.19
972	1057	4.547905	GAATCGCGCCCTCGTCGA	62.548	66.667	0.00	0.00	43.76	4.20
973	1058	4.124351	AATCGCGCCCTCGTCGAA	62.124	61.111	0.00	0.00	43.23	3.71
1006	1091	3.433306	AGGTGTTTGCTGTAATGCCTA	57.567	42.857	0.00	0.00	0.00	3.93
1068	1153	1.900351	CCTTGGCCAGATGACGAGA	59.100	57.895	5.11	0.00	0.00	4.04
1365	1450	0.911769	TCCCCGACAAGCTCATGATT	59.088	50.000	0.00	0.00	0.00	2.57
1538	1658	2.119801	ACTGCAAGGTCATGGACATC	57.880	50.000	0.00	0.00	39.30	3.06
1554	1674	8.244113	TCATGGACATCGATACATAGTTCATAC	58.756	37.037	6.34	0.00	27.81	2.39
1576	1696	1.046472	AATGCATGTGCCATCCCTGG	61.046	55.000	0.00	0.00	46.17	4.45
1593	1713	2.569059	CTGGTGGAGTGCCTGATATTG	58.431	52.381	0.00	0.00	34.31	1.90
1594	1714	1.312815	GGTGGAGTGCCTGATATTGC	58.687	55.000	0.00	0.00	34.31	3.56
1595	1715	1.133976	GGTGGAGTGCCTGATATTGCT	60.134	52.381	0.00	0.00	34.31	3.91
1614	1734	2.423373	GCTTTGGGCATATCTCCCTTGA	60.423	50.000	10.17	0.00	44.23	3.02
1627	1747	6.642733	ATCTCCCTTGATCCAAGTAAGAAA	57.357	37.500	6.04	0.00	39.58	2.52
1672	1792	9.410556	GCATTTTATTAGTAGGCCAAATATGTG	57.589	33.333	5.01	4.61	0.00	3.21
1715	1837	9.246670	TGTTTCTGATAATGGACATGAATTTCT	57.753	29.630	0.00	0.00	0.00	2.52
1722	1844	5.824904	ATGGACATGAATTTCTGCTACAC	57.175	39.130	0.00	0.00	0.00	2.90
1725	1847	5.048782	TGGACATGAATTTCTGCTACACAAC	60.049	40.000	0.00	0.00	0.00	3.32
1736	1858	5.009631	TCTGCTACACAACCATGCTTAATT	58.990	37.500	0.00	0.00	0.00	1.40
1737	1859	5.476599	TCTGCTACACAACCATGCTTAATTT	59.523	36.000	0.00	0.00	0.00	1.82
1738	1860	5.468592	TGCTACACAACCATGCTTAATTTG	58.531	37.500	0.00	0.00	0.00	2.32
1932	2086	3.009363	TGAGAGCATCAAATCCAGGACAA	59.991	43.478	0.00	0.00	37.82	3.18
2094	2248	4.482386	GCATGCATTTGCTCGATGAATAT	58.518	39.130	14.21	0.00	42.66	1.28
2111	2265	4.511454	TGAATATGCTTACGTGATGGAAGC	59.489	41.667	14.63	14.63	44.71	3.86
2195	2365	1.608283	GGAGAAACACCCACTCTTCGG	60.608	57.143	0.00	0.00	0.00	4.30
2369	2539	5.110598	GGAAGTTACTAAGCTCTTAGCACC	58.889	45.833	14.67	7.28	45.56	5.01
2422	2592	7.980662	TGGATTTGTGCCATTTCTATACATTTG	59.019	33.333	0.00	0.00	0.00	2.32
2431	2601	8.783093	GCCATTTCTATACATTTGTGTAGCATA	58.217	33.333	9.00	0.00	38.92	3.14
2470	2640	5.127491	AGTCTTACGTAGCTCTGCTATCTT	58.873	41.667	2.50	0.00	43.30	2.40
2471	2641	5.008217	AGTCTTACGTAGCTCTGCTATCTTG	59.992	44.000	2.50	0.00	43.30	3.02
2492	2662	5.856126	TGAATGTTTGGCTCTACTTTACG	57.144	39.130	0.00	0.00	0.00	3.18
2519	2696	6.939132	AATTCTGGAAGATTGCTATGAGTG	57.061	37.500	0.00	0.00	46.36	3.51
2528	2705	3.683365	TTGCTATGAGTGCACTCTCAA	57.317	42.857	38.81	31.10	45.65	3.02
2546	2723	3.264947	TCAAATGATGCGAGTTCTCTGG	58.735	45.455	0.00	0.00	0.00	3.86
2583	2760	9.719355	TCTAGTAATTTGCATGTTTGAGAACTA	57.281	29.630	0.00	0.00	36.70	2.24
2631	2808	4.050553	AGGTTGCATTTTGTGAATGTTCG	58.949	39.130	0.00	0.00	0.00	3.95
2668	2845	7.581213	TCTGTAAGTGTTGGATGAAAATTGT	57.419	32.000	0.00	0.00	33.76	2.71
2669	2846	8.006298	TCTGTAAGTGTTGGATGAAAATTGTT	57.994	30.769	0.00	0.00	33.76	2.83
2670	2847	8.474025	TCTGTAAGTGTTGGATGAAAATTGTTT	58.526	29.630	0.00	0.00	33.76	2.83
2671	2848	9.743057	CTGTAAGTGTTGGATGAAAATTGTTTA	57.257	29.630	0.00	0.00	0.00	2.01
2677	2854	9.092876	GTGTTGGATGAAAATTGTTTAAGTTGA	57.907	29.630	0.00	0.00	0.00	3.18
2700	2894	3.813800	TCATACGTTGACAGTACACGAC	58.186	45.455	9.37	3.11	0.00	4.34
2702	2896	2.115348	ACGTTGACAGTACACGACAG	57.885	50.000	9.37	3.72	0.00	3.51
2713	2912	5.347907	ACAGTACACGACAGCTTTTTATAGC	59.652	40.000	0.00	0.00	41.53	2.97
2717	2916	4.935205	ACACGACAGCTTTTTATAGCATGA	59.065	37.500	0.00	0.00	43.68	3.07
2829	3043	9.655769	CTTCATAATGTTGCAATCATGTAGTAC	57.344	33.333	0.59	0.00	0.00	2.73
2830	3044	8.962884	TCATAATGTTGCAATCATGTAGTACT	57.037	30.769	0.59	0.00	0.00	2.73
2880	3134	9.241919	TGAATGTTGTTAATCCAGTTACATGAT	57.758	29.630	0.00	0.00	0.00	2.45
2946	3209	4.222810	AGGCATGATGTACAGACTACACAA	59.777	41.667	0.33	0.00	0.00	3.33
2956	3219	5.738619	ACAGACTACACAACATGTCCATA	57.261	39.130	0.00	0.00	42.09	2.74
2992	3255	4.129380	AGCAAATTTTCCAAGTTCCAAGC	58.871	39.130	0.00	0.00	0.00	4.01
3041	3304	4.918810	TCATCTAGCGCTGACTATTTCA	57.081	40.909	22.90	0.00	0.00	2.69
3050	3313	4.183865	CGCTGACTATTTCATCCTTGTCA	58.816	43.478	0.00	0.00	32.17	3.58
3053	3316	4.517285	TGACTATTTCATCCTTGTCAGGC	58.483	43.478	0.00	0.00	40.58	4.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	0.309612	GGCGTGCCTCTTTCGAAAAA	59.690	50.000	12.41	0.00	0.00	1.94
18	19	1.512156	GGGCGTGCCTCTTTCGAAAA	61.512	55.000	12.41	2.66	36.10	2.29
19	20	1.964373	GGGCGTGCCTCTTTCGAAA	60.964	57.895	10.71	10.71	36.10	3.46
20	21	2.358247	GGGCGTGCCTCTTTCGAA	60.358	61.111	11.25	0.00	36.10	3.71
21	22	4.735132	CGGGCGTGCCTCTTTCGA	62.735	66.667	11.25	0.00	36.10	3.71
23	24	3.423154	CACGGGCGTGCCTCTTTC	61.423	66.667	11.25	0.00	39.39	2.62
34	35	1.372087	CTTTCATGAGAGGCACGGGC	61.372	60.000	0.00	0.00	40.13	6.13
48	49	5.123227	ACGAGAGTCATGGTTTTTCTTTCA	58.877	37.500	0.00	0.00	44.19	2.69
126	134	0.944311	GGTTGTGCTTTCGCGAGAGA	60.944	55.000	28.81	12.02	43.69	3.10
316	338	2.732597	CGGTCGTGCCTTTTGAAAACAA	60.733	45.455	0.00	0.00	34.25	2.83
317	339	1.202200	CGGTCGTGCCTTTTGAAAACA	60.202	47.619	0.00	0.00	34.25	2.83
357	379	0.040425	CCCTTTCGCAAAAGTCACGG	60.040	55.000	0.00	0.00	40.30	4.94
426	463	2.924290	CGGTCTTCCTTAGCTTTTCGAG	59.076	50.000	0.00	0.00	0.00	4.04
479	541	6.449458	CACGCGTTTTCAGCTTTATAAATTG	58.551	36.000	10.22	1.44	0.00	2.32
481	543	4.557301	GCACGCGTTTTCAGCTTTATAAAT	59.443	37.500	10.22	0.00	0.00	1.40
486	548	0.383737	CGCACGCGTTTTCAGCTTTA	60.384	50.000	10.22	0.00	34.35	1.85
492	554	0.179171	TTTTTCCGCACGCGTTTTCA	60.179	45.000	10.22	0.00	37.81	2.69
556	637	0.039437	ACGCGTTCTCAGTCATTCGT	60.039	50.000	5.58	0.00	0.00	3.85
672	753	1.212751	GGAACAAATCTGGCACGGC	59.787	57.895	0.00	0.00	32.53	5.68
673	754	0.893270	TGGGAACAAATCTGGCACGG	60.893	55.000	0.00	0.00	37.44	4.94
674	755	0.240945	GTGGGAACAAATCTGGCACG	59.759	55.000	0.00	0.00	46.06	5.34
675	756	0.240945	CGTGGGAACAAATCTGGCAC	59.759	55.000	0.00	0.00	46.06	5.01
676	757	1.523154	GCGTGGGAACAAATCTGGCA	61.523	55.000	0.00	0.00	46.06	4.92
677	758	1.212751	GCGTGGGAACAAATCTGGC	59.787	57.895	0.00	0.00	46.06	4.85
682	763	2.322081	CCGACGCGTGGGAACAAAT	61.322	57.895	33.71	0.00	46.06	2.32
912	995	2.105134	GGAGTCGAGAGAGGGAGATACA	59.895	54.545	0.00	0.00	43.49	2.29
915	998	0.476771	GGGAGTCGAGAGAGGGAGAT	59.523	60.000	0.00	0.00	43.49	2.75
940	1025	1.571919	GATTCGATTGGACGAGGGTG	58.428	55.000	0.00	0.00	43.04	4.61
943	1028	1.540607	CGCGATTCGATTGGACGAGG	61.541	60.000	10.88	0.00	43.04	4.63
945	1030	2.228241	GCGCGATTCGATTGGACGA	61.228	57.895	12.10	0.00	41.67	4.20
952	1037	3.825833	GACGAGGGCGCGATTCGAT	62.826	63.158	26.15	14.36	42.48	3.59
955	1040	4.547905	TCGACGAGGGCGCGATTC	62.548	66.667	12.10	2.07	42.48	2.52
956	1041	4.124351	TTCGACGAGGGCGCGATT	62.124	61.111	12.10	0.00	42.30	3.34
957	1042	4.849329	GTTCGACGAGGGCGCGAT	62.849	66.667	12.10	0.00	42.30	4.58
965	1050	3.672255	TAAGCCGCGGTTCGACGAG	62.672	63.158	28.70	0.00	41.67	4.18
966	1051	3.736100	TAAGCCGCGGTTCGACGA	61.736	61.111	28.70	2.26	41.67	4.20
972	1057	1.964373	CACCTTGTAAGCCGCGGTT	60.964	57.895	28.70	20.13	0.00	4.44
973	1058	2.358247	CACCTTGTAAGCCGCGGT	60.358	61.111	28.70	10.76	0.00	5.68
977	1062	0.951558	AGCAAACACCTTGTAAGCCG	59.048	50.000	0.00	0.00	37.36	5.52
978	1063	1.681264	ACAGCAAACACCTTGTAAGCC	59.319	47.619	0.00	0.00	37.36	4.35
1006	1091	2.032681	GCCTGCTTCGTCTGGGTT	59.967	61.111	0.00	0.00	0.00	4.11
1365	1450	2.285592	TCCCTGAGCTCCATGCCA	60.286	61.111	12.15	0.00	44.23	4.92
1377	1462	4.463891	AGCATCAAAATTACCTTGTCCCTG	59.536	41.667	0.00	0.00	0.00	4.45
1538	1658	9.321590	CATGCATTTTGTATGAACTATGTATCG	57.678	33.333	0.00	0.00	42.03	2.92
1576	1696	2.338577	AGCAATATCAGGCACTCCAC	57.661	50.000	0.00	0.00	34.60	4.02
1604	1724	6.642733	TTTCTTACTTGGATCAAGGGAGAT	57.357	37.500	11.65	0.00	44.81	2.75
1605	1725	6.448369	TTTTCTTACTTGGATCAAGGGAGA	57.552	37.500	11.65	10.45	44.81	3.71
1707	1828	4.321156	GCATGGTTGTGTAGCAGAAATTCA	60.321	41.667	0.00	0.00	37.73	2.57
1715	1837	5.468592	CAAATTAAGCATGGTTGTGTAGCA	58.531	37.500	20.13	0.00	38.87	3.49
1722	1844	6.629128	TCACATACCAAATTAAGCATGGTTG	58.371	36.000	20.13	3.46	44.92	3.77
1725	1847	6.183360	ACCATCACATACCAAATTAAGCATGG	60.183	38.462	0.00	0.00	40.16	3.66
1835	1958	9.862585	GACAAACAAAACAATCAATCATAAACC	57.137	29.630	0.00	0.00	0.00	3.27
1863	2017	8.103305	ACATACTCAGTCACCTGTATCAAAATT	58.897	33.333	0.00	0.00	39.82	1.82
2094	2248	0.739462	CCGCTTCCATCACGTAAGCA	60.739	55.000	17.53	0.00	44.62	3.91
2111	2265	8.191446	CAGTAATAGTGTATATGATTCCTCCCG	58.809	40.741	0.00	0.00	0.00	5.14
2369	2539	3.318017	CGAAGTCCAGGAAAGTACACTG	58.682	50.000	0.00	0.00	0.00	3.66
2431	2601	7.321153	ACGTAAGACTACTGCATAGTGAAATT	58.679	34.615	11.86	6.05	44.64	1.82
2470	2640	5.543714	TCGTAAAGTAGAGCCAAACATTCA	58.456	37.500	0.00	0.00	0.00	2.57
2471	2641	6.476243	TTCGTAAAGTAGAGCCAAACATTC	57.524	37.500	0.00	0.00	0.00	2.67
2492	2662	8.465201	ACTCATAGCAATCTTCCAGAATTTTTC	58.535	33.333	0.00	0.00	0.00	2.29
2519	2696	2.733820	CTCGCATCATTTGAGAGTGC	57.266	50.000	0.00	0.00	44.54	4.40
2528	2705	3.834489	ATCCAGAGAACTCGCATCATT	57.166	42.857	0.00	0.00	34.09	2.57
2546	2723	7.333528	TGCAAATTACTAGAACATGGGAATC	57.666	36.000	0.00	0.00	0.00	2.52
2607	2784	4.669206	ACATTCACAAAATGCAACCTGA	57.331	36.364	0.00	0.00	0.00	3.86
2631	2808	7.480542	CCAACACTTACAGATTTGCGTAAATAC	59.519	37.037	11.62	5.99	36.66	1.89
2668	2845	8.373048	ACTGTCAACGTATGAATCAACTTAAA	57.627	30.769	0.00	0.00	40.50	1.52
2669	2846	7.956420	ACTGTCAACGTATGAATCAACTTAA	57.044	32.000	0.00	0.00	40.50	1.85
2670	2847	8.083462	TGTACTGTCAACGTATGAATCAACTTA	58.917	33.333	0.00	0.00	40.50	2.24
2671	2848	6.926826	TGTACTGTCAACGTATGAATCAACTT	59.073	34.615	0.00	0.00	40.50	2.66
2677	2854	4.855388	GTCGTGTACTGTCAACGTATGAAT	59.145	41.667	12.88	0.00	40.50	2.57
2946	3209	4.397420	TGCAGTTGTTCTTATGGACATGT	58.603	39.130	0.00	0.00	0.00	3.21
2956	3219	4.660789	AATTTGCTCTGCAGTTGTTCTT	57.339	36.364	14.67	0.00	40.61	2.52
3015	3278	6.777526	AATAGTCAGCGCTAGATGAAATTC	57.222	37.500	10.99	0.00	45.07	2.17
3050	3313	2.375174	TGGAACCAGAAACATGTAGCCT	59.625	45.455	0.00	0.00	0.00	4.58
3053	3316	6.406370	TGTAGATGGAACCAGAAACATGTAG	58.594	40.000	0.00	0.00	0.00	2.74

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.