Multiple sequence alignment - TraesCS7A01G192600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G192600 chr7A 100.000 4673 0 0 1 4673 150446434 150441762 0.000000e+00 8630.0
1 TraesCS7A01G192600 chr7A 87.921 1159 121 15 3522 4673 150426658 150425512 0.000000e+00 1347.0
2 TraesCS7A01G192600 chr7D 93.937 2342 122 16 1129 3465 150838095 150835769 0.000000e+00 3520.0
3 TraesCS7A01G192600 chr7D 94.318 88 4 1 1 88 150838288 150838202 2.930000e-27 134.0
4 TraesCS7A01G192600 chr7D 88.298 94 10 1 3457 3550 150835749 150835657 1.370000e-20 111.0
5 TraesCS7A01G192600 chr7D 100.000 40 0 0 1090 1129 150838164 150838125 1.800000e-09 75.0
6 TraesCS7A01G192600 chr4B 92.890 2405 154 8 1130 3524 402949943 402947546 0.000000e+00 3478.0
7 TraesCS7A01G192600 chr4B 90.044 1587 144 7 1933 3509 402864615 402863033 0.000000e+00 2043.0
8 TraesCS7A01G192600 chr4B 89.798 1588 145 9 1933 3509 402874707 402873126 0.000000e+00 2019.0
9 TraesCS7A01G192600 chr4B 92.330 1356 103 1 1933 3288 402871378 402870024 0.000000e+00 1927.0
10 TraesCS7A01G192600 chr4B 92.183 1356 105 1 1933 3288 402861284 402859930 0.000000e+00 1916.0
11 TraesCS7A01G192600 chr4B 84.004 969 141 13 3712 4673 402862866 402861905 0.000000e+00 918.0
12 TraesCS7A01G192600 chr4B 84.004 969 141 13 3712 4673 402872960 402871999 0.000000e+00 918.0
13 TraesCS7A01G192600 chr4B 83.665 955 145 11 3724 4673 402947126 402946178 0.000000e+00 889.0
14 TraesCS7A01G192600 chr4B 93.443 305 20 0 99 403 634413806 634413502 1.980000e-123 453.0
15 TraesCS7A01G192600 chr4B 90.452 199 14 2 878 1074 634412881 634412686 1.670000e-64 257.0
16 TraesCS7A01G192600 chr4B 90.256 195 16 3 495 688 634413516 634413324 7.760000e-63 252.0
17 TraesCS7A01G192600 chr4B 89.873 79 6 1 3459 3537 402869876 402869800 2.980000e-17 100.0
18 TraesCS7A01G192600 chr4B 88.889 81 7 1 3457 3537 402859784 402859706 1.070000e-16 99.0
19 TraesCS7A01G192600 chr4B 94.340 53 3 0 1077 1129 402950032 402949980 1.080000e-11 82.4
20 TraesCS7A01G192600 chr7B 91.559 2405 156 16 1130 3524 113044723 113042356 0.000000e+00 3273.0
21 TraesCS7A01G192600 chr7B 88.469 1587 168 8 1933 3509 112914605 112913024 0.000000e+00 1903.0
22 TraesCS7A01G192600 chr7B 87.957 1586 171 11 1933 3509 112911284 112909710 0.000000e+00 1853.0
23 TraesCS7A01G192600 chr7B 84.592 967 137 12 3713 4673 113041984 113041024 0.000000e+00 950.0
24 TraesCS7A01G192600 chr7B 92.787 305 22 0 99 403 612297115 612297419 4.290000e-120 442.0
25 TraesCS7A01G192600 chr7B 90.256 195 16 3 495 688 612297405 612297597 7.760000e-63 252.0
26 TraesCS7A01G192600 chr7B 84.971 173 23 3 907 1077 1363434 1363605 6.220000e-39 172.0
27 TraesCS7A01G192600 chr7B 87.654 81 8 1 3457 3537 112906460 112906382 4.980000e-15 93.5
28 TraesCS7A01G192600 chr7B 94.340 53 3 0 1077 1129 113044812 113044760 1.080000e-11 82.4
29 TraesCS7A01G192600 chr5B 94.118 306 18 0 98 403 216648728 216649033 2.550000e-127 466.0
30 TraesCS7A01G192600 chr5B 89.655 203 16 5 489 688 216649011 216649211 2.160000e-63 254.0
31 TraesCS7A01G192600 chr5B 88.325 197 18 2 878 1072 216649662 216649855 1.010000e-56 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G192600 chr7A 150441762 150446434 4672 True 8630.000000 8630 100.000000 1 4673 1 chr7A.!!$R2 4672
1 TraesCS7A01G192600 chr7A 150425512 150426658 1146 True 1347.000000 1347 87.921000 3522 4673 1 chr7A.!!$R1 1151
2 TraesCS7A01G192600 chr7D 150835657 150838288 2631 True 960.000000 3520 94.138250 1 3550 4 chr7D.!!$R1 3549
3 TraesCS7A01G192600 chr4B 402946178 402950032 3854 True 1483.133333 3478 90.298333 1077 4673 3 chr4B.!!$R3 3596
4 TraesCS7A01G192600 chr4B 402859706 402864615 4909 True 1244.000000 2043 88.780000 1933 4673 4 chr4B.!!$R1 2740
5 TraesCS7A01G192600 chr4B 402869800 402874707 4907 True 1241.000000 2019 89.001250 1933 4673 4 chr4B.!!$R2 2740
6 TraesCS7A01G192600 chr4B 634412686 634413806 1120 True 320.666667 453 91.383667 99 1074 3 chr4B.!!$R4 975
7 TraesCS7A01G192600 chr7B 113041024 113044812 3788 True 1435.133333 3273 90.163667 1077 4673 3 chr7B.!!$R2 3596
8 TraesCS7A01G192600 chr7B 112906382 112914605 8223 True 1283.166667 1903 88.026667 1933 3537 3 chr7B.!!$R1 1604
9 TraesCS7A01G192600 chr5B 216648728 216649855 1127 False 317.000000 466 90.699333 98 1072 3 chr5B.!!$F1 974

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
484 485 0.032130 CACCCGTGTAGGATCCGATG 59.968 60.000 5.98 0.0 45.00 3.84 F
875 1041 0.041839 CAGCACACGCAAGACTGAAC 60.042 55.000 0.00 0.0 42.27 3.18 F
876 1042 1.083401 GCACACGCAAGACTGAACG 60.083 57.895 0.00 0.0 43.62 3.95 F
882 1145 1.326548 ACGCAAGACTGAACGTGTTTC 59.673 47.619 0.00 0.0 43.62 2.78 F
1074 1339 1.818642 GTGCTGTTGGAGATGCTCTT 58.181 50.000 0.00 0.0 0.00 2.85 F
1887 2188 2.034221 GAGGAGGCCACAACCACC 59.966 66.667 5.01 0.0 40.52 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1877 0.108615 ACGAGGAAGGCGATGAACTG 60.109 55.000 0.00 0.0 0.00 3.16 R
1864 2165 0.321653 GTTGTGGCCTCCTCGAACAT 60.322 55.000 3.32 0.0 0.00 2.71 R
2022 2323 0.957395 CCATCGCCAAGTCTGTGCTT 60.957 55.000 0.00 0.0 0.00 3.91 R
2400 2701 3.521529 GATGAGGTCGATGGCCCGG 62.522 68.421 0.00 0.0 0.00 5.73 R
2949 3251 1.803289 GACGTACACCCCGTAGACC 59.197 63.158 0.00 0.0 38.92 3.85 R
3802 10966 0.105964 CGGAGACACCAACCTCAACA 59.894 55.000 0.00 0.0 38.90 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.094146 GTCAGCTTTGAAATACAGAGAGGC 59.906 45.833 0.00 0.00 33.26 4.70
50 51 1.495574 AGGTCTCAGCCGTACCTATCT 59.504 52.381 0.00 0.00 41.86 1.98
58 59 0.592148 CCGTACCTATCTCCGCTCAC 59.408 60.000 0.00 0.00 0.00 3.51
94 95 1.340657 CTCACAGCTTGAGTCGACGC 61.341 60.000 12.80 12.80 46.12 5.19
161 162 1.740296 CACGACGAAGGCCCGAAAT 60.740 57.895 8.49 0.00 0.00 2.17
207 208 2.545952 GCGTCGTCTATCCATCCACATT 60.546 50.000 0.00 0.00 0.00 2.71
270 271 1.101331 GACGTCGTGGGTAGAGGAAT 58.899 55.000 0.63 0.00 0.00 3.01
318 319 2.722201 ATCCGGAGTCGTTGGAGCC 61.722 63.158 11.34 0.00 34.75 4.70
361 362 2.582978 GTTGCCCCCTCGAGGTAC 59.417 66.667 29.25 18.10 0.00 3.34
380 381 1.272769 ACGGTTCCTTTCTTCCTCGAG 59.727 52.381 5.13 5.13 0.00 4.04
385 386 4.429108 GTTCCTTTCTTCCTCGAGAGATG 58.571 47.826 15.71 11.53 40.84 2.90
401 402 1.308216 ATGGAGAGGGAGGGTTGGG 60.308 63.158 0.00 0.00 0.00 4.12
402 403 2.692741 GGAGAGGGAGGGTTGGGG 60.693 72.222 0.00 0.00 0.00 4.96
403 404 2.692741 GAGAGGGAGGGTTGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
404 405 3.216371 AGAGGGAGGGTTGGGGGA 61.216 66.667 0.00 0.00 0.00 4.81
405 406 2.044620 GAGGGAGGGTTGGGGGAT 59.955 66.667 0.00 0.00 0.00 3.85
406 407 2.287194 AGGGAGGGTTGGGGGATG 60.287 66.667 0.00 0.00 0.00 3.51
407 408 2.617215 GGGAGGGTTGGGGGATGT 60.617 66.667 0.00 0.00 0.00 3.06
408 409 2.690734 GGGAGGGTTGGGGGATGTC 61.691 68.421 0.00 0.00 0.00 3.06
409 410 2.590092 GAGGGTTGGGGGATGTCG 59.410 66.667 0.00 0.00 0.00 4.35
410 411 3.699134 GAGGGTTGGGGGATGTCGC 62.699 68.421 0.00 0.00 0.00 5.19
412 413 4.090588 GGTTGGGGGATGTCGCGA 62.091 66.667 3.71 3.71 0.00 5.87
413 414 2.818274 GTTGGGGGATGTCGCGAC 60.818 66.667 31.66 31.66 0.00 5.19
414 415 4.090588 TTGGGGGATGTCGCGACC 62.091 66.667 34.34 20.54 0.00 4.79
439 440 2.814604 TCCGTGCTGGATCCGATG 59.185 61.111 7.39 0.86 43.74 3.84
440 441 2.280389 CCGTGCTGGATCCGATGG 60.280 66.667 7.39 4.72 42.00 3.51
441 442 2.969238 CGTGCTGGATCCGATGGC 60.969 66.667 7.39 9.33 0.00 4.40
442 443 2.592861 GTGCTGGATCCGATGGCC 60.593 66.667 7.39 0.00 0.00 5.36
443 444 4.240103 TGCTGGATCCGATGGCCG 62.240 66.667 7.39 0.00 38.18 6.13
477 478 4.367023 GCGCACACCCGTGTAGGA 62.367 66.667 0.30 0.00 45.50 2.94
478 479 2.577059 CGCACACCCGTGTAGGAT 59.423 61.111 0.00 0.00 45.50 3.24
479 480 1.518572 CGCACACCCGTGTAGGATC 60.519 63.158 0.00 0.00 45.50 3.36
480 481 1.153429 GCACACCCGTGTAGGATCC 60.153 63.158 2.48 2.48 45.50 3.36
481 482 1.141019 CACACCCGTGTAGGATCCG 59.859 63.158 5.98 0.00 42.83 4.18
482 483 1.000521 ACACCCGTGTAGGATCCGA 60.001 57.895 5.98 0.00 45.00 4.55
483 484 0.396695 ACACCCGTGTAGGATCCGAT 60.397 55.000 5.98 0.00 45.00 4.18
484 485 0.032130 CACCCGTGTAGGATCCGATG 59.968 60.000 5.98 0.00 45.00 3.84
485 486 0.106369 ACCCGTGTAGGATCCGATGA 60.106 55.000 5.98 0.00 45.00 2.92
486 487 1.037493 CCCGTGTAGGATCCGATGAA 58.963 55.000 5.98 0.00 45.00 2.57
487 488 1.000163 CCCGTGTAGGATCCGATGAAG 60.000 57.143 5.98 0.00 45.00 3.02
488 489 1.603172 CCGTGTAGGATCCGATGAAGC 60.603 57.143 5.98 0.00 45.00 3.86
489 490 1.067060 CGTGTAGGATCCGATGAAGCA 59.933 52.381 5.98 0.00 0.00 3.91
490 491 2.748605 GTGTAGGATCCGATGAAGCAG 58.251 52.381 5.98 0.00 0.00 4.24
491 492 1.688735 TGTAGGATCCGATGAAGCAGG 59.311 52.381 5.98 0.00 0.00 4.85
492 493 1.689273 GTAGGATCCGATGAAGCAGGT 59.311 52.381 5.98 0.00 0.00 4.00
493 494 0.467384 AGGATCCGATGAAGCAGGTG 59.533 55.000 5.98 0.00 0.00 4.00
494 495 0.533755 GGATCCGATGAAGCAGGTGG 60.534 60.000 0.00 0.00 0.00 4.61
495 496 0.465705 GATCCGATGAAGCAGGTGGA 59.534 55.000 0.00 0.00 0.00 4.02
496 497 0.467384 ATCCGATGAAGCAGGTGGAG 59.533 55.000 0.00 0.00 0.00 3.86
497 498 1.153289 CCGATGAAGCAGGTGGAGG 60.153 63.158 0.00 0.00 0.00 4.30
498 499 1.817099 CGATGAAGCAGGTGGAGGC 60.817 63.158 0.00 0.00 0.00 4.70
499 500 1.817099 GATGAAGCAGGTGGAGGCG 60.817 63.158 0.00 0.00 34.54 5.52
500 501 2.244117 GATGAAGCAGGTGGAGGCGA 62.244 60.000 0.00 0.00 34.54 5.54
501 502 1.841302 ATGAAGCAGGTGGAGGCGAA 61.841 55.000 0.00 0.00 34.54 4.70
502 503 1.743252 GAAGCAGGTGGAGGCGAAG 60.743 63.158 0.00 0.00 34.54 3.79
503 504 3.259633 AAGCAGGTGGAGGCGAAGG 62.260 63.158 0.00 0.00 34.54 3.46
504 505 4.021925 GCAGGTGGAGGCGAAGGT 62.022 66.667 0.00 0.00 0.00 3.50
505 506 2.046892 CAGGTGGAGGCGAAGGTG 60.047 66.667 0.00 0.00 0.00 4.00
506 507 3.322466 AGGTGGAGGCGAAGGTGG 61.322 66.667 0.00 0.00 0.00 4.61
547 548 2.515071 GGAGATGGATCCAGCGGCT 61.515 63.158 23.69 15.35 39.34 5.52
596 597 1.079503 CTCTTTGTTGAGGTAGCCGC 58.920 55.000 0.00 0.00 0.00 6.53
614 615 1.221840 CGCAGGGTATCCAGCAGTT 59.778 57.895 10.36 0.00 44.70 3.16
666 667 4.525996 ACTGAATATGTGGCAGTGCATTA 58.474 39.130 18.61 1.87 41.02 1.90
700 701 9.878599 AGTTTAACTGAATATGTTGAAGAAACG 57.121 29.630 0.00 0.00 42.10 3.60
701 702 9.659830 GTTTAACTGAATATGTTGAAGAAACGT 57.340 29.630 0.00 0.00 42.10 3.99
702 703 9.872757 TTTAACTGAATATGTTGAAGAAACGTC 57.127 29.630 0.00 0.00 42.10 4.34
703 704 7.730364 AACTGAATATGTTGAAGAAACGTCT 57.270 32.000 0.00 0.00 42.10 4.18
704 705 7.121974 ACTGAATATGTTGAAGAAACGTCTG 57.878 36.000 0.00 0.00 42.10 3.51
705 706 5.927030 TGAATATGTTGAAGAAACGTCTGC 58.073 37.500 0.00 0.00 42.10 4.26
707 708 6.149308 TGAATATGTTGAAGAAACGTCTGCAT 59.851 34.615 0.00 0.00 39.34 3.96
708 709 4.836125 ATGTTGAAGAAACGTCTGCATT 57.164 36.364 0.00 0.00 39.34 3.56
712 713 3.951306 TGAAGAAACGTCTGCATTTGTG 58.049 40.909 0.00 0.00 34.14 3.33
713 714 3.625313 TGAAGAAACGTCTGCATTTGTGA 59.375 39.130 0.00 0.00 34.14 3.58
716 717 4.601019 AGAAACGTCTGCATTTGTGAAAG 58.399 39.130 0.00 0.00 30.83 2.62
717 718 4.096382 AGAAACGTCTGCATTTGTGAAAGT 59.904 37.500 0.00 0.00 30.83 2.66
718 719 5.295787 AGAAACGTCTGCATTTGTGAAAGTA 59.704 36.000 0.00 0.00 30.83 2.24
719 720 5.493133 AACGTCTGCATTTGTGAAAGTAA 57.507 34.783 0.00 0.00 0.00 2.24
720 721 5.493133 ACGTCTGCATTTGTGAAAGTAAA 57.507 34.783 0.00 0.00 0.00 2.01
722 723 6.503524 ACGTCTGCATTTGTGAAAGTAAAAT 58.496 32.000 0.00 0.00 0.00 1.82
723 724 6.636850 ACGTCTGCATTTGTGAAAGTAAAATC 59.363 34.615 0.00 0.00 0.00 2.17
724 725 6.857964 CGTCTGCATTTGTGAAAGTAAAATCT 59.142 34.615 0.00 0.00 0.00 2.40
725 726 8.015087 CGTCTGCATTTGTGAAAGTAAAATCTA 58.985 33.333 0.00 0.00 0.00 1.98
726 727 9.118236 GTCTGCATTTGTGAAAGTAAAATCTAC 57.882 33.333 0.00 0.00 0.00 2.59
727 728 8.296713 TCTGCATTTGTGAAAGTAAAATCTACC 58.703 33.333 0.00 0.00 0.00 3.18
728 729 7.946207 TGCATTTGTGAAAGTAAAATCTACCA 58.054 30.769 0.00 0.00 0.00 3.25
729 730 8.417106 TGCATTTGTGAAAGTAAAATCTACCAA 58.583 29.630 0.00 0.00 0.00 3.67
730 731 8.915654 GCATTTGTGAAAGTAAAATCTACCAAG 58.084 33.333 0.00 0.00 0.00 3.61
731 732 9.410556 CATTTGTGAAAGTAAAATCTACCAAGG 57.589 33.333 0.00 0.00 0.00 3.61
733 734 6.007703 TGTGAAAGTAAAATCTACCAAGGGG 58.992 40.000 0.00 0.00 41.29 4.79
735 736 6.717997 GTGAAAGTAAAATCTACCAAGGGGAA 59.282 38.462 0.00 0.00 38.05 3.97
736 737 6.946009 TGAAAGTAAAATCTACCAAGGGGAAG 59.054 38.462 0.00 0.00 38.05 3.46
739 740 7.098845 AGTAAAATCTACCAAGGGGAAGAAA 57.901 36.000 0.00 0.00 38.05 2.52
741 742 6.857437 AAAATCTACCAAGGGGAAGAAATG 57.143 37.500 0.00 0.00 38.05 2.32
742 743 4.526438 ATCTACCAAGGGGAAGAAATGG 57.474 45.455 0.00 0.00 38.05 3.16
745 746 2.073776 ACCAAGGGGAAGAAATGGTCT 58.926 47.619 0.00 0.00 40.23 3.85
746 747 3.265489 ACCAAGGGGAAGAAATGGTCTA 58.735 45.455 0.00 0.00 40.23 2.59
747 748 3.267031 ACCAAGGGGAAGAAATGGTCTAG 59.733 47.826 0.00 0.00 40.23 2.43
748 749 3.267031 CCAAGGGGAAGAAATGGTCTAGT 59.733 47.826 0.00 0.00 34.56 2.57
750 751 3.803340 AGGGGAAGAAATGGTCTAGTCA 58.197 45.455 0.00 0.00 34.56 3.41
751 752 4.175962 AGGGGAAGAAATGGTCTAGTCAA 58.824 43.478 0.00 0.00 34.56 3.18
752 753 4.226168 AGGGGAAGAAATGGTCTAGTCAAG 59.774 45.833 0.00 0.00 34.56 3.02
753 754 4.225267 GGGGAAGAAATGGTCTAGTCAAGA 59.775 45.833 0.00 0.00 34.56 3.02
754 755 5.423886 GGGAAGAAATGGTCTAGTCAAGAG 58.576 45.833 0.00 0.00 34.56 2.85
755 756 5.423886 GGAAGAAATGGTCTAGTCAAGAGG 58.576 45.833 0.00 0.00 34.56 3.69
757 758 6.043854 AAGAAATGGTCTAGTCAAGAGGAC 57.956 41.667 0.00 0.00 40.58 3.85
758 759 5.336849 AAGAAATGGTCTAGTCAAGAGGACG 60.337 44.000 0.00 0.00 43.33 4.79
759 760 7.476440 AAGAAATGGTCTAGTCAAGAGGACGA 61.476 42.308 0.00 0.00 43.33 4.20
767 768 3.813529 GTCAAGAGGACGATTTGTTGG 57.186 47.619 0.00 0.00 36.65 3.77
769 770 3.058914 GTCAAGAGGACGATTTGTTGGTG 60.059 47.826 0.00 0.00 36.65 4.17
770 771 2.185004 AGAGGACGATTTGTTGGTGG 57.815 50.000 0.00 0.00 0.00 4.61
771 772 0.521735 GAGGACGATTTGTTGGTGGC 59.478 55.000 0.00 0.00 0.00 5.01
772 773 0.179004 AGGACGATTTGTTGGTGGCA 60.179 50.000 0.00 0.00 0.00 4.92
773 774 0.671251 GGACGATTTGTTGGTGGCAA 59.329 50.000 0.00 0.00 0.00 4.52
774 775 1.601914 GGACGATTTGTTGGTGGCAAC 60.602 52.381 0.00 0.00 35.75 4.17
788 954 0.893270 GGCAACATGGGTGCACACTA 60.893 55.000 21.89 7.20 0.00 2.74
790 956 1.896220 CAACATGGGTGCACACTAGT 58.104 50.000 21.89 15.60 0.00 2.57
794 960 0.615331 ATGGGTGCACACTAGTCTGG 59.385 55.000 21.89 0.00 0.00 3.86
796 962 0.905357 GGGTGCACACTAGTCTGGAT 59.095 55.000 20.43 0.00 0.00 3.41
798 964 2.159085 GGGTGCACACTAGTCTGGATAC 60.159 54.545 20.43 0.00 0.00 2.24
805 971 8.195436 GTGCACACTAGTCTGGATACTTTAATA 58.805 37.037 13.17 0.00 37.61 0.98
806 972 8.414003 TGCACACTAGTCTGGATACTTTAATAG 58.586 37.037 0.04 0.00 37.61 1.73
809 975 9.710818 ACACTAGTCTGGATACTTTAATAGGAA 57.289 33.333 0.00 0.00 37.61 3.36
810 976 9.968870 CACTAGTCTGGATACTTTAATAGGAAC 57.031 37.037 0.00 0.00 37.61 3.62
811 977 8.848182 ACTAGTCTGGATACTTTAATAGGAACG 58.152 37.037 0.00 0.00 37.61 3.95
812 978 7.052142 AGTCTGGATACTTTAATAGGAACGG 57.948 40.000 0.00 0.00 37.61 4.44
813 979 6.837568 AGTCTGGATACTTTAATAGGAACGGA 59.162 38.462 0.00 0.00 37.61 4.69
815 981 7.813627 GTCTGGATACTTTAATAGGAACGGATC 59.186 40.741 0.00 0.00 37.61 3.36
816 982 7.507956 TCTGGATACTTTAATAGGAACGGATCA 59.492 37.037 0.00 0.00 37.61 2.92
817 983 8.025270 TGGATACTTTAATAGGAACGGATCAA 57.975 34.615 0.00 0.00 37.61 2.57
819 985 9.152595 GGATACTTTAATAGGAACGGATCAATC 57.847 37.037 0.00 0.00 0.00 2.67
820 986 9.706691 GATACTTTAATAGGAACGGATCAATCA 57.293 33.333 0.00 0.00 0.00 2.57
823 989 8.210946 ACTTTAATAGGAACGGATCAATCATCA 58.789 33.333 0.00 0.00 32.33 3.07
825 991 8.972458 TTAATAGGAACGGATCAATCATCAAA 57.028 30.769 0.00 0.00 32.33 2.69
827 993 8.469309 AATAGGAACGGATCAATCATCAAATT 57.531 30.769 0.00 0.00 32.33 1.82
828 994 6.382869 AGGAACGGATCAATCATCAAATTC 57.617 37.500 0.00 0.00 32.33 2.17
829 995 6.125029 AGGAACGGATCAATCATCAAATTCT 58.875 36.000 0.00 0.00 32.33 2.40
831 997 7.123247 AGGAACGGATCAATCATCAAATTCTTT 59.877 33.333 0.00 0.00 32.33 2.52
833 999 9.143631 GAACGGATCAATCATCAAATTCTTTTT 57.856 29.630 0.00 0.00 32.33 1.94
834 1000 8.470040 ACGGATCAATCATCAAATTCTTTTTG 57.530 30.769 0.00 0.00 32.33 2.44
835 1001 7.546667 ACGGATCAATCATCAAATTCTTTTTGG 59.453 33.333 0.00 0.00 32.33 3.28
836 1002 7.010738 CGGATCAATCATCAAATTCTTTTTGGG 59.989 37.037 0.00 0.00 32.33 4.12
838 1004 9.609346 GATCAATCATCAAATTCTTTTTGGGAT 57.391 29.630 0.00 0.96 0.00 3.85
841 1007 9.321562 CAATCATCAAATTCTTTTTGGGATAGG 57.678 33.333 0.00 0.00 0.00 2.57
842 1008 8.843308 ATCATCAAATTCTTTTTGGGATAGGA 57.157 30.769 0.00 0.00 0.00 2.94
843 1009 8.843308 TCATCAAATTCTTTTTGGGATAGGAT 57.157 30.769 0.00 0.00 0.00 3.24
844 1010 9.270707 TCATCAAATTCTTTTTGGGATAGGATT 57.729 29.630 0.00 0.00 0.00 3.01
860 1026 8.540388 GGGATAGGATTTATGATTACTACAGCA 58.460 37.037 0.00 0.00 0.00 4.41
861 1027 9.372369 GGATAGGATTTATGATTACTACAGCAC 57.628 37.037 0.00 0.00 0.00 4.40
862 1028 9.929180 GATAGGATTTATGATTACTACAGCACA 57.071 33.333 0.00 0.00 0.00 4.57
863 1029 9.712305 ATAGGATTTATGATTACTACAGCACAC 57.288 33.333 0.00 0.00 0.00 3.82
864 1030 6.701841 AGGATTTATGATTACTACAGCACACG 59.298 38.462 0.00 0.00 0.00 4.49
865 1031 5.712217 TTTATGATTACTACAGCACACGC 57.288 39.130 0.00 0.00 38.99 5.34
866 1032 2.734276 TGATTACTACAGCACACGCA 57.266 45.000 0.00 0.00 42.27 5.24
868 1034 2.993220 TGATTACTACAGCACACGCAAG 59.007 45.455 0.00 0.00 42.27 4.01
870 1036 2.060326 TACTACAGCACACGCAAGAC 57.940 50.000 0.00 0.00 42.27 3.01
871 1037 0.389391 ACTACAGCACACGCAAGACT 59.611 50.000 0.00 0.00 42.27 3.24
875 1041 0.041839 CAGCACACGCAAGACTGAAC 60.042 55.000 0.00 0.00 42.27 3.18
876 1042 1.083401 GCACACGCAAGACTGAACG 60.083 57.895 0.00 0.00 43.62 3.95
882 1145 1.326548 ACGCAAGACTGAACGTGTTTC 59.673 47.619 0.00 0.00 43.62 2.78
889 1152 6.482835 CAAGACTGAACGTGTTTCAATTACA 58.517 36.000 0.00 0.00 43.90 2.41
890 1153 6.861065 AGACTGAACGTGTTTCAATTACAT 57.139 33.333 0.00 0.00 43.90 2.29
891 1154 6.658831 AGACTGAACGTGTTTCAATTACATG 58.341 36.000 0.00 0.00 43.90 3.21
919 1182 9.747898 ATTGAAATGGTAGTTGAATTGGTAGTA 57.252 29.630 0.00 0.00 0.00 1.82
920 1183 8.786826 TGAAATGGTAGTTGAATTGGTAGTAG 57.213 34.615 0.00 0.00 0.00 2.57
987 1252 9.956720 ATATATAAACATTCTGCTGCAAAACTC 57.043 29.630 3.02 0.00 0.00 3.01
990 1255 4.595762 ACATTCTGCTGCAAAACTCAAT 57.404 36.364 3.02 0.00 0.00 2.57
991 1256 5.710513 ACATTCTGCTGCAAAACTCAATA 57.289 34.783 3.02 0.00 0.00 1.90
1023 1288 9.838339 ATCAAAGAATCTTTATAGACCATCGTT 57.162 29.630 8.03 0.00 31.99 3.85
1074 1339 1.818642 GTGCTGTTGGAGATGCTCTT 58.181 50.000 0.00 0.00 0.00 2.85
1075 1340 2.157738 GTGCTGTTGGAGATGCTCTTT 58.842 47.619 0.00 0.00 0.00 2.52
1076 1341 3.338249 GTGCTGTTGGAGATGCTCTTTA 58.662 45.455 0.00 0.00 0.00 1.85
1077 1342 3.753272 GTGCTGTTGGAGATGCTCTTTAA 59.247 43.478 0.00 0.00 0.00 1.52
1078 1343 4.005650 TGCTGTTGGAGATGCTCTTTAAG 58.994 43.478 0.00 0.00 0.00 1.85
1079 1344 4.256920 GCTGTTGGAGATGCTCTTTAAGA 58.743 43.478 0.00 0.00 0.00 2.10
1080 1345 4.332268 GCTGTTGGAGATGCTCTTTAAGAG 59.668 45.833 16.93 16.93 45.04 2.85
1558 1859 4.329545 GCCGCCACCTCCAGTTCA 62.330 66.667 0.00 0.00 0.00 3.18
1774 2075 4.845580 CAATCCTCCGCGGCAGCT 62.846 66.667 23.51 1.87 42.32 4.24
1815 2116 2.669569 GGCGTGCTGTGGACATGT 60.670 61.111 0.00 0.00 0.00 3.21
1864 2165 3.329889 ATGGCAAGGCGAGGGACA 61.330 61.111 0.00 0.00 0.00 4.02
1887 2188 2.034221 GAGGAGGCCACAACCACC 59.966 66.667 5.01 0.00 40.52 4.61
1926 2227 2.126071 CGGATGGTGTTCGACGCT 60.126 61.111 0.00 0.00 0.00 5.07
2195 2496 2.642254 CCTACGTGGAGGCCGTCAA 61.642 63.158 0.00 0.00 39.60 3.18
2197 2498 2.558554 CTACGTGGAGGCCGTCAAGG 62.559 65.000 15.63 8.02 44.97 3.61
2400 2701 3.083997 AGGCACCAGGATCCCGAC 61.084 66.667 8.55 0.00 0.00 4.79
2622 2923 2.870372 GTCACGCCATTGCTGGTC 59.130 61.111 0.00 0.00 45.10 4.02
2625 2926 2.045926 ACGCCATTGCTGGTCCTC 60.046 61.111 0.00 0.00 45.10 3.71
2640 2941 4.477975 CTCGACCACGCGACCCTC 62.478 72.222 15.93 0.00 39.58 4.30
2957 3259 3.528370 CAGGCTCGGGGTCTACGG 61.528 72.222 0.00 0.00 0.00 4.02
3016 3318 2.862347 GAAGGCGAGGGACGTGTACG 62.862 65.000 0.00 2.43 44.60 3.67
3108 3410 2.687566 ATCGGGCTCGGGGAAGTT 60.688 61.111 5.94 0.00 36.95 2.66
3115 3417 3.636313 CTCGGGGAAGTTGCGCGTA 62.636 63.158 27.93 16.37 43.95 4.42
3167 3469 4.055227 GGATCCCGGGGTTTGCCA 62.055 66.667 23.50 0.00 36.17 4.92
3171 3473 1.948403 ATCCCGGGGTTTGCCATGAT 61.948 55.000 23.50 0.00 36.17 2.45
3203 3505 0.878523 TGGAACGACTTTGAGGTGCG 60.879 55.000 0.00 0.00 0.00 5.34
3279 3581 1.817099 CGTTGCCAGAGATGGAGCC 60.817 63.158 0.00 0.00 0.00 4.70
3352 3654 4.364409 GTTGCGCGGGACAACGAC 62.364 66.667 18.43 0.00 38.18 4.34
3365 3667 3.590443 AACGACTCGACGGTGCTCG 62.590 63.158 5.20 0.00 45.88 5.03
3401 3703 5.163581 GGATACGCCTAGTGTAGTTCTTTCA 60.164 44.000 0.00 0.00 31.94 2.69
3503 10447 4.607293 TGTACTCACATTCTTGAGCACT 57.393 40.909 5.36 0.00 46.09 4.40
3504 10448 4.960938 TGTACTCACATTCTTGAGCACTT 58.039 39.130 5.36 0.00 46.09 3.16
3560 10536 9.228636 GTAATCTACTCTTTCTCGAGAATGTTC 57.771 37.037 29.58 11.46 35.06 3.18
3574 10550 8.601845 TCGAGAATGTTCACTAATCTTCAAAA 57.398 30.769 0.00 0.00 0.00 2.44
3591 10567 1.308998 AAATTCGCATGGATCGGACC 58.691 50.000 0.00 0.00 0.00 4.46
3629 10605 2.088674 GAGGGGTGGGATCGACATCG 62.089 65.000 0.00 0.00 41.45 3.84
3637 10613 1.437573 GATCGACATCGCTGGTGGA 59.562 57.895 0.00 0.00 39.60 4.02
3642 10618 3.083349 CATCGCTGGTGGAGGGGA 61.083 66.667 0.00 0.00 35.30 4.81
3643 10619 2.765807 ATCGCTGGTGGAGGGGAG 60.766 66.667 0.00 0.00 35.30 4.30
3644 10620 3.625632 ATCGCTGGTGGAGGGGAGT 62.626 63.158 0.00 0.00 35.30 3.85
3657 10633 1.687297 GGGGAGTTCGAGGGTGGATC 61.687 65.000 0.00 0.00 0.00 3.36
3659 10635 1.227002 GAGTTCGAGGGTGGATCGC 60.227 63.158 0.00 0.00 39.98 4.58
3670 10646 1.079875 GTGGATCGCCGTCGCTAAAA 61.080 55.000 0.00 0.00 36.79 1.52
3695 10673 2.093816 TGAGATGGATGTGTGAGCACTC 60.094 50.000 1.99 0.00 45.44 3.51
3696 10674 1.209019 AGATGGATGTGTGAGCACTCC 59.791 52.381 1.99 1.78 45.44 3.85
3755 10919 0.594602 TCATCGAAGTCGTTGACCGT 59.405 50.000 9.75 0.00 41.42 4.83
3761 10925 2.050714 GTCGTTGACCGTCTCGCA 60.051 61.111 0.00 0.00 37.94 5.10
3783 10947 1.151908 AAGGGTTGCAAGGGCGTTA 59.848 52.632 0.00 0.00 45.35 3.18
3788 10952 2.265182 TTGCAAGGGCGTTAGTGGC 61.265 57.895 0.00 0.00 45.35 5.01
3794 10958 2.357760 GGCGTTAGTGGCCGAACA 60.358 61.111 13.55 0.00 41.39 3.18
3802 10966 1.826487 GTGGCCGAACAGGTTTGGT 60.826 57.895 17.53 0.00 44.32 3.67
3805 10969 1.388837 GGCCGAACAGGTTTGGTGTT 61.389 55.000 17.53 0.00 44.32 3.32
3811 10975 2.525105 ACAGGTTTGGTGTTGAGGTT 57.475 45.000 0.00 0.00 0.00 3.50
3814 10978 1.006639 AGGTTTGGTGTTGAGGTTGGT 59.993 47.619 0.00 0.00 0.00 3.67
3828 10992 2.036862 AGGTTGGTGTCTCCGTTAGTTC 59.963 50.000 0.00 0.00 39.52 3.01
3841 11005 3.556775 CCGTTAGTTCGTCTTGTTTTCCA 59.443 43.478 0.00 0.00 0.00 3.53
3850 11014 3.364864 CGTCTTGTTTTCCATTCATCGCA 60.365 43.478 0.00 0.00 0.00 5.10
3894 11058 5.116882 GTTGTGTTTCTCTGGAGTTGTAGT 58.883 41.667 0.00 0.00 0.00 2.73
3898 11062 4.163458 TGTTTCTCTGGAGTTGTAGTTGGT 59.837 41.667 0.00 0.00 0.00 3.67
3899 11063 5.364446 TGTTTCTCTGGAGTTGTAGTTGGTA 59.636 40.000 0.00 0.00 0.00 3.25
3902 11066 5.084519 TCTCTGGAGTTGTAGTTGGTATGT 58.915 41.667 0.00 0.00 0.00 2.29
3954 11118 2.176798 TCATATGGTGGGGTTGATTCCC 59.823 50.000 2.13 0.00 46.31 3.97
3992 11156 0.676782 ACCCGCAATGCCTTGTCTAC 60.677 55.000 0.00 0.00 34.69 2.59
4186 11353 1.224592 GAGCCATGGACGGTGGAAT 59.775 57.895 18.40 0.00 39.12 3.01
4218 11385 2.867472 CGGATCCGTTGGTGTTGC 59.133 61.111 26.35 0.00 34.35 4.17
4236 11403 0.462581 GCTGACGATTGGAGCCATGA 60.463 55.000 0.00 0.00 0.00 3.07
4253 11420 4.711399 CCATGATTGGTGCTGAAGATCTA 58.289 43.478 0.00 0.00 38.30 1.98
4254 11421 5.314529 CCATGATTGGTGCTGAAGATCTAT 58.685 41.667 0.00 0.00 38.30 1.98
4270 11437 0.745845 CTATTGCCCGTTGAGCTGCT 60.746 55.000 0.00 0.00 0.00 4.24
4321 11489 0.180171 TGGCATGTAGGGGTTCATCG 59.820 55.000 0.00 0.00 0.00 3.84
4328 11496 2.595095 GGGGTTCATCGCCATCCA 59.405 61.111 0.00 0.00 46.70 3.41
4353 11522 0.769247 AGGGTCGGTTTTAGGCTTGT 59.231 50.000 0.00 0.00 0.00 3.16
4355 11524 2.574824 AGGGTCGGTTTTAGGCTTGTAT 59.425 45.455 0.00 0.00 0.00 2.29
4358 11527 3.514645 GTCGGTTTTAGGCTTGTATCGA 58.485 45.455 0.00 0.00 0.00 3.59
4400 11569 6.072230 CGTCTCCTAGATGAAGATGATGCTAA 60.072 42.308 0.00 0.00 33.07 3.09
4437 11606 1.336795 GCCATTTGTTTCCGGAAGTGG 60.337 52.381 17.97 19.84 0.00 4.00
4439 11608 1.960689 CATTTGTTTCCGGAAGTGGGT 59.039 47.619 17.97 2.33 0.00 4.51
4440 11609 2.146920 TTTGTTTCCGGAAGTGGGTT 57.853 45.000 17.97 0.00 0.00 4.11
4468 11637 2.232452 AGCAAAGCTCAGATACGACACT 59.768 45.455 0.00 0.00 30.62 3.55
4493 11662 1.310216 GGGCCGATGGGTTGTTGTAC 61.310 60.000 0.00 0.00 34.97 2.90
4500 11670 0.249405 TGGGTTGTTGTACGGTCGAC 60.249 55.000 7.13 7.13 0.00 4.20
4523 11693 1.541310 ATGTTCCGAACTCGAGGCCA 61.541 55.000 18.41 2.63 43.02 5.36
4524 11694 1.005394 GTTCCGAACTCGAGGCCAA 60.005 57.895 18.41 0.00 43.02 4.52
4537 11707 2.706890 GAGGCCAAAATACGGACTTCA 58.293 47.619 5.01 0.00 44.15 3.02
4538 11708 3.078837 GAGGCCAAAATACGGACTTCAA 58.921 45.455 5.01 0.00 44.15 2.69
4639 11810 1.902432 GCCTACGGCTCGATAGGGT 60.902 63.158 10.98 0.00 46.69 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.170919 GCGGAGATAGGTACGGCTGA 61.171 60.000 0.00 0.00 0.00 4.26
50 51 2.197605 TGAAGACGTGGTGAGCGGA 61.198 57.895 0.00 0.00 0.00 5.54
92 93 3.918220 GTTGGAGATGCTCGCGCG 61.918 66.667 26.76 26.76 39.65 6.86
94 95 2.806856 GCTGTTGGAGATGCTCGCG 61.807 63.158 0.00 0.00 0.00 5.87
207 208 3.524095 ATGTGGAGGTGAATTTGGACA 57.476 42.857 0.00 0.00 0.00 4.02
261 262 1.273886 GGGATGGAGCGATTCCTCTAC 59.726 57.143 7.75 0.00 46.92 2.59
344 345 2.582978 GTACCTCGAGGGGGCAAC 59.417 66.667 34.04 19.17 40.27 4.17
348 349 2.363406 AACCGTACCTCGAGGGGG 60.363 66.667 34.04 30.18 42.86 5.40
349 350 2.421399 GGAACCGTACCTCGAGGGG 61.421 68.421 34.04 26.62 42.86 4.79
361 362 1.544691 TCTCGAGGAAGAAAGGAACCG 59.455 52.381 13.56 0.00 0.00 4.44
364 365 3.449018 CCATCTCTCGAGGAAGAAAGGAA 59.551 47.826 13.56 0.00 0.00 3.36
380 381 1.127343 CAACCCTCCCTCTCCATCTC 58.873 60.000 0.00 0.00 0.00 2.75
385 386 2.692741 CCCCAACCCTCCCTCTCC 60.693 72.222 0.00 0.00 0.00 3.71
423 424 2.280389 CCATCGGATCCAGCACGG 60.280 66.667 13.41 0.22 0.00 4.94
424 425 2.969238 GCCATCGGATCCAGCACG 60.969 66.667 13.41 0.00 0.00 5.34
425 426 2.592861 GGCCATCGGATCCAGCAC 60.593 66.667 13.41 0.00 0.00 4.40
426 427 4.240103 CGGCCATCGGATCCAGCA 62.240 66.667 13.41 0.00 34.75 4.41
464 465 0.396695 ATCGGATCCTACACGGGTGT 60.397 55.000 10.75 9.66 46.87 4.16
465 466 0.032130 CATCGGATCCTACACGGGTG 59.968 60.000 10.75 0.00 0.00 4.61
466 467 0.106369 TCATCGGATCCTACACGGGT 60.106 55.000 10.75 0.00 0.00 5.28
467 468 1.000163 CTTCATCGGATCCTACACGGG 60.000 57.143 10.75 0.00 0.00 5.28
468 469 1.603172 GCTTCATCGGATCCTACACGG 60.603 57.143 10.75 0.00 0.00 4.94
469 470 1.067060 TGCTTCATCGGATCCTACACG 59.933 52.381 10.75 0.00 0.00 4.49
470 471 2.546795 CCTGCTTCATCGGATCCTACAC 60.547 54.545 10.75 0.00 0.00 2.90
471 472 1.688735 CCTGCTTCATCGGATCCTACA 59.311 52.381 10.75 0.00 0.00 2.74
472 473 1.689273 ACCTGCTTCATCGGATCCTAC 59.311 52.381 10.75 0.00 0.00 3.18
473 474 1.688735 CACCTGCTTCATCGGATCCTA 59.311 52.381 10.75 0.00 0.00 2.94
474 475 0.467384 CACCTGCTTCATCGGATCCT 59.533 55.000 10.75 0.00 0.00 3.24
475 476 0.533755 CCACCTGCTTCATCGGATCC 60.534 60.000 0.00 0.00 0.00 3.36
476 477 0.465705 TCCACCTGCTTCATCGGATC 59.534 55.000 0.00 0.00 0.00 3.36
477 478 0.467384 CTCCACCTGCTTCATCGGAT 59.533 55.000 0.00 0.00 0.00 4.18
478 479 1.617018 CCTCCACCTGCTTCATCGGA 61.617 60.000 0.00 0.00 0.00 4.55
479 480 1.153289 CCTCCACCTGCTTCATCGG 60.153 63.158 0.00 0.00 0.00 4.18
480 481 1.817099 GCCTCCACCTGCTTCATCG 60.817 63.158 0.00 0.00 0.00 3.84
481 482 1.817099 CGCCTCCACCTGCTTCATC 60.817 63.158 0.00 0.00 0.00 2.92
482 483 1.841302 TTCGCCTCCACCTGCTTCAT 61.841 55.000 0.00 0.00 0.00 2.57
483 484 2.454832 CTTCGCCTCCACCTGCTTCA 62.455 60.000 0.00 0.00 0.00 3.02
484 485 1.743252 CTTCGCCTCCACCTGCTTC 60.743 63.158 0.00 0.00 0.00 3.86
485 486 2.348998 CTTCGCCTCCACCTGCTT 59.651 61.111 0.00 0.00 0.00 3.91
486 487 3.710722 CCTTCGCCTCCACCTGCT 61.711 66.667 0.00 0.00 0.00 4.24
487 488 4.021925 ACCTTCGCCTCCACCTGC 62.022 66.667 0.00 0.00 0.00 4.85
488 489 2.046892 CACCTTCGCCTCCACCTG 60.047 66.667 0.00 0.00 0.00 4.00
489 490 3.322466 CCACCTTCGCCTCCACCT 61.322 66.667 0.00 0.00 0.00 4.00
490 491 4.410400 CCCACCTTCGCCTCCACC 62.410 72.222 0.00 0.00 0.00 4.61
491 492 4.410400 CCCCACCTTCGCCTCCAC 62.410 72.222 0.00 0.00 0.00 4.02
522 523 1.766461 GGATCCATCTCCACCCCGT 60.766 63.158 6.95 0.00 35.24 5.28
527 528 1.070445 CCGCTGGATCCATCTCCAC 59.930 63.158 16.63 0.08 40.43 4.02
571 572 2.863153 CTCAACAAAGAGGCGCGG 59.137 61.111 8.83 0.00 31.94 6.46
581 582 2.740826 GCGCGGCTACCTCAACAA 60.741 61.111 8.83 0.00 0.00 2.83
666 667 5.653769 ACATATTCAGTTAAACTGCATGGCT 59.346 36.000 2.68 0.00 45.54 4.75
670 671 9.013229 TCTTCAACATATTCAGTTAAACTGCAT 57.987 29.630 0.00 0.00 45.54 3.96
676 677 9.872757 GACGTTTCTTCAACATATTCAGTTAAA 57.127 29.630 0.00 0.00 34.68 1.52
688 689 4.142491 ACAAATGCAGACGTTTCTTCAACA 60.142 37.500 0.00 0.00 34.68 3.33
689 690 4.204978 CACAAATGCAGACGTTTCTTCAAC 59.795 41.667 0.00 0.00 32.57 3.18
691 692 3.625313 TCACAAATGCAGACGTTTCTTCA 59.375 39.130 0.00 0.00 32.57 3.02
692 693 4.209452 TCACAAATGCAGACGTTTCTTC 57.791 40.909 0.00 0.00 32.57 2.87
693 694 4.630894 TTCACAAATGCAGACGTTTCTT 57.369 36.364 0.00 0.00 32.57 2.52
694 695 4.096382 ACTTTCACAAATGCAGACGTTTCT 59.904 37.500 0.00 0.00 32.57 2.52
695 696 4.351192 ACTTTCACAAATGCAGACGTTTC 58.649 39.130 0.00 0.00 32.57 2.78
696 697 4.370364 ACTTTCACAAATGCAGACGTTT 57.630 36.364 0.00 0.00 35.33 3.60
697 698 5.493133 TTACTTTCACAAATGCAGACGTT 57.507 34.783 0.00 0.00 0.00 3.99
698 699 5.493133 TTTACTTTCACAAATGCAGACGT 57.507 34.783 0.00 0.00 0.00 4.34
700 701 9.118236 GTAGATTTTACTTTCACAAATGCAGAC 57.882 33.333 0.00 0.00 0.00 3.51
701 702 8.296713 GGTAGATTTTACTTTCACAAATGCAGA 58.703 33.333 0.00 0.00 0.00 4.26
702 703 8.081633 TGGTAGATTTTACTTTCACAAATGCAG 58.918 33.333 0.00 0.00 0.00 4.41
703 704 7.946207 TGGTAGATTTTACTTTCACAAATGCA 58.054 30.769 0.00 0.00 0.00 3.96
704 705 8.810652 TTGGTAGATTTTACTTTCACAAATGC 57.189 30.769 0.00 0.00 0.00 3.56
705 706 9.410556 CCTTGGTAGATTTTACTTTCACAAATG 57.589 33.333 0.00 0.00 0.00 2.32
707 708 7.014808 CCCCTTGGTAGATTTTACTTTCACAAA 59.985 37.037 0.00 0.00 0.00 2.83
708 709 6.492087 CCCCTTGGTAGATTTTACTTTCACAA 59.508 38.462 0.00 0.00 0.00 3.33
712 713 7.173032 TCTTCCCCTTGGTAGATTTTACTTTC 58.827 38.462 0.00 0.00 33.52 2.62
713 714 7.098845 TCTTCCCCTTGGTAGATTTTACTTT 57.901 36.000 0.00 0.00 33.52 2.66
716 717 7.147897 CCATTTCTTCCCCTTGGTAGATTTTAC 60.148 40.741 0.00 0.00 37.82 2.01
717 718 6.895204 CCATTTCTTCCCCTTGGTAGATTTTA 59.105 38.462 0.00 0.00 37.82 1.52
718 719 5.721480 CCATTTCTTCCCCTTGGTAGATTTT 59.279 40.000 0.00 0.00 37.82 1.82
719 720 5.222547 ACCATTTCTTCCCCTTGGTAGATTT 60.223 40.000 0.00 0.00 37.82 2.17
720 721 4.294970 ACCATTTCTTCCCCTTGGTAGATT 59.705 41.667 0.00 0.00 37.82 2.40
722 723 3.265489 ACCATTTCTTCCCCTTGGTAGA 58.735 45.455 0.00 0.00 38.87 2.59
723 724 3.267031 AGACCATTTCTTCCCCTTGGTAG 59.733 47.826 0.00 0.00 40.67 3.18
724 725 3.265489 AGACCATTTCTTCCCCTTGGTA 58.735 45.455 0.00 0.00 40.67 3.25
725 726 2.073776 AGACCATTTCTTCCCCTTGGT 58.926 47.619 0.00 0.00 43.19 3.67
726 727 2.907458 AGACCATTTCTTCCCCTTGG 57.093 50.000 0.00 0.00 0.00 3.61
727 728 4.019321 TGACTAGACCATTTCTTCCCCTTG 60.019 45.833 0.00 0.00 35.55 3.61
728 729 4.175962 TGACTAGACCATTTCTTCCCCTT 58.824 43.478 0.00 0.00 35.55 3.95
729 730 3.803340 TGACTAGACCATTTCTTCCCCT 58.197 45.455 0.00 0.00 35.55 4.79
730 731 4.225267 TCTTGACTAGACCATTTCTTCCCC 59.775 45.833 0.00 0.00 35.55 4.81
731 732 5.422214 TCTTGACTAGACCATTTCTTCCC 57.578 43.478 0.00 0.00 35.55 3.97
733 734 6.103330 GTCCTCTTGACTAGACCATTTCTTC 58.897 44.000 0.00 0.00 41.03 2.87
735 736 4.158764 CGTCCTCTTGACTAGACCATTTCT 59.841 45.833 0.00 0.00 42.13 2.52
736 737 4.158025 TCGTCCTCTTGACTAGACCATTTC 59.842 45.833 0.00 0.00 42.13 2.17
739 740 3.367646 TCGTCCTCTTGACTAGACCAT 57.632 47.619 0.00 0.00 42.13 3.55
741 742 4.082136 ACAAATCGTCCTCTTGACTAGACC 60.082 45.833 0.00 0.00 42.13 3.85
742 743 5.061920 ACAAATCGTCCTCTTGACTAGAC 57.938 43.478 0.00 0.00 42.13 2.59
745 746 4.039973 ACCAACAAATCGTCCTCTTGACTA 59.960 41.667 0.00 0.00 42.13 2.59
746 747 3.181454 ACCAACAAATCGTCCTCTTGACT 60.181 43.478 0.00 0.00 42.13 3.41
747 748 3.058914 CACCAACAAATCGTCCTCTTGAC 60.059 47.826 0.00 0.00 40.81 3.18
748 749 3.138304 CACCAACAAATCGTCCTCTTGA 58.862 45.455 0.00 0.00 0.00 3.02
750 751 2.504367 CCACCAACAAATCGTCCTCTT 58.496 47.619 0.00 0.00 0.00 2.85
751 752 1.882352 GCCACCAACAAATCGTCCTCT 60.882 52.381 0.00 0.00 0.00 3.69
752 753 0.521735 GCCACCAACAAATCGTCCTC 59.478 55.000 0.00 0.00 0.00 3.71
753 754 0.179004 TGCCACCAACAAATCGTCCT 60.179 50.000 0.00 0.00 0.00 3.85
754 755 0.671251 TTGCCACCAACAAATCGTCC 59.329 50.000 0.00 0.00 0.00 4.79
764 765 2.506061 GCACCCATGTTGCCACCAA 61.506 57.895 5.42 0.00 0.00 3.67
766 767 2.916703 TGCACCCATGTTGCCACC 60.917 61.111 12.65 0.00 0.00 4.61
767 768 2.339712 GTGCACCCATGTTGCCAC 59.660 61.111 5.22 8.12 0.00 5.01
769 770 0.893270 TAGTGTGCACCCATGTTGCC 60.893 55.000 15.69 6.22 0.00 4.52
770 771 0.523072 CTAGTGTGCACCCATGTTGC 59.477 55.000 15.69 9.15 0.00 4.17
771 772 1.806542 GACTAGTGTGCACCCATGTTG 59.193 52.381 15.69 0.72 0.00 3.33
772 773 1.699634 AGACTAGTGTGCACCCATGTT 59.300 47.619 15.69 0.00 0.00 2.71
773 774 1.002430 CAGACTAGTGTGCACCCATGT 59.998 52.381 15.69 8.34 0.00 3.21
774 775 1.676916 CCAGACTAGTGTGCACCCATG 60.677 57.143 15.69 4.95 0.00 3.66
775 776 0.615331 CCAGACTAGTGTGCACCCAT 59.385 55.000 15.69 2.34 0.00 4.00
777 778 0.905357 ATCCAGACTAGTGTGCACCC 59.095 55.000 15.69 1.68 0.00 4.61
778 779 2.761208 AGTATCCAGACTAGTGTGCACC 59.239 50.000 15.69 5.76 0.00 5.01
779 780 4.457834 AAGTATCCAGACTAGTGTGCAC 57.542 45.455 14.42 10.75 0.00 4.57
780 781 6.599356 TTAAAGTATCCAGACTAGTGTGCA 57.401 37.500 14.42 0.00 0.00 4.57
781 782 7.868415 CCTATTAAAGTATCCAGACTAGTGTGC 59.132 40.741 14.42 1.13 0.00 4.57
782 783 9.132923 TCCTATTAAAGTATCCAGACTAGTGTG 57.867 37.037 12.98 12.98 0.00 3.82
784 785 9.968870 GTTCCTATTAAAGTATCCAGACTAGTG 57.031 37.037 0.00 0.00 0.00 2.74
788 954 6.837568 TCCGTTCCTATTAAAGTATCCAGACT 59.162 38.462 0.00 0.00 0.00 3.24
790 956 7.507956 TGATCCGTTCCTATTAAAGTATCCAGA 59.492 37.037 0.00 0.00 0.00 3.86
794 960 9.706691 TGATTGATCCGTTCCTATTAAAGTATC 57.293 33.333 0.00 0.00 0.00 2.24
796 962 9.706691 GATGATTGATCCGTTCCTATTAAAGTA 57.293 33.333 0.00 0.00 0.00 2.24
798 964 8.607441 TGATGATTGATCCGTTCCTATTAAAG 57.393 34.615 0.00 0.00 0.00 1.85
805 971 6.125029 AGAATTTGATGATTGATCCGTTCCT 58.875 36.000 0.00 0.00 0.00 3.36
806 972 6.382869 AGAATTTGATGATTGATCCGTTCC 57.617 37.500 0.00 0.00 0.00 3.62
809 975 7.546667 CCAAAAAGAATTTGATGATTGATCCGT 59.453 33.333 2.64 0.00 39.02 4.69
810 976 7.010738 CCCAAAAAGAATTTGATGATTGATCCG 59.989 37.037 2.64 0.00 39.02 4.18
811 977 8.042515 TCCCAAAAAGAATTTGATGATTGATCC 58.957 33.333 2.64 0.00 39.02 3.36
812 978 9.609346 ATCCCAAAAAGAATTTGATGATTGATC 57.391 29.630 2.64 0.00 39.02 2.92
815 981 9.321562 CCTATCCCAAAAAGAATTTGATGATTG 57.678 33.333 2.64 5.61 39.02 2.67
816 982 9.270707 TCCTATCCCAAAAAGAATTTGATGATT 57.729 29.630 2.64 0.00 39.02 2.57
817 983 8.843308 TCCTATCCCAAAAAGAATTTGATGAT 57.157 30.769 2.64 6.76 39.02 2.45
819 985 9.895138 AAATCCTATCCCAAAAAGAATTTGATG 57.105 29.630 2.64 0.00 39.02 3.07
833 999 8.540388 GCTGTAGTAATCATAAATCCTATCCCA 58.460 37.037 0.00 0.00 0.00 4.37
834 1000 8.540388 TGCTGTAGTAATCATAAATCCTATCCC 58.460 37.037 0.00 0.00 0.00 3.85
835 1001 9.372369 GTGCTGTAGTAATCATAAATCCTATCC 57.628 37.037 0.00 0.00 0.00 2.59
836 1002 9.929180 TGTGCTGTAGTAATCATAAATCCTATC 57.071 33.333 0.00 0.00 0.00 2.08
838 1004 7.865889 CGTGTGCTGTAGTAATCATAAATCCTA 59.134 37.037 0.00 0.00 0.00 2.94
839 1005 6.701841 CGTGTGCTGTAGTAATCATAAATCCT 59.298 38.462 0.00 0.00 0.00 3.24
841 1007 6.019075 TGCGTGTGCTGTAGTAATCATAAATC 60.019 38.462 0.00 0.00 43.34 2.17
842 1008 5.815222 TGCGTGTGCTGTAGTAATCATAAAT 59.185 36.000 0.00 0.00 43.34 1.40
843 1009 5.172205 TGCGTGTGCTGTAGTAATCATAAA 58.828 37.500 0.00 0.00 43.34 1.40
844 1010 4.749976 TGCGTGTGCTGTAGTAATCATAA 58.250 39.130 0.00 0.00 43.34 1.90
847 1013 2.734276 TGCGTGTGCTGTAGTAATCA 57.266 45.000 0.00 0.00 43.34 2.57
848 1014 3.060895 GTCTTGCGTGTGCTGTAGTAATC 59.939 47.826 0.00 0.00 43.34 1.75
852 1018 0.389391 AGTCTTGCGTGTGCTGTAGT 59.611 50.000 0.00 0.00 43.34 2.73
857 1023 1.490693 CGTTCAGTCTTGCGTGTGCT 61.491 55.000 0.00 0.00 43.34 4.40
858 1024 1.083401 CGTTCAGTCTTGCGTGTGC 60.083 57.895 0.00 0.00 43.20 4.57
860 1026 2.297625 CACGTTCAGTCTTGCGTGT 58.702 52.632 7.63 0.00 46.30 4.49
862 1028 1.326548 GAAACACGTTCAGTCTTGCGT 59.673 47.619 0.00 0.00 36.15 5.24
863 1029 1.326245 TGAAACACGTTCAGTCTTGCG 59.674 47.619 0.00 0.00 41.47 4.85
864 1030 3.398954 TTGAAACACGTTCAGTCTTGC 57.601 42.857 0.00 0.00 46.85 4.01
865 1031 6.482835 TGTAATTGAAACACGTTCAGTCTTG 58.517 36.000 0.00 0.00 46.85 3.02
866 1032 6.671614 TGTAATTGAAACACGTTCAGTCTT 57.328 33.333 0.00 0.00 46.85 3.01
868 1034 5.339611 GCATGTAATTGAAACACGTTCAGTC 59.660 40.000 0.00 0.00 46.85 3.51
870 1036 5.211454 TGCATGTAATTGAAACACGTTCAG 58.789 37.500 0.00 0.00 46.85 3.02
871 1037 5.175090 TGCATGTAATTGAAACACGTTCA 57.825 34.783 0.00 0.00 44.74 3.18
875 1041 6.687653 TTCAATGCATGTAATTGAAACACG 57.312 33.333 24.45 3.59 46.05 4.49
882 1145 8.597227 CAACTACCATTTCAATGCATGTAATTG 58.403 33.333 0.00 13.90 36.54 2.32
889 1152 6.819649 CCAATTCAACTACCATTTCAATGCAT 59.180 34.615 0.00 0.00 35.08 3.96
890 1153 6.164876 CCAATTCAACTACCATTTCAATGCA 58.835 36.000 0.00 0.00 35.08 3.96
891 1154 6.165577 ACCAATTCAACTACCATTTCAATGC 58.834 36.000 0.00 0.00 35.08 3.56
955 1220 9.777297 TGCAGCAGAATGTTTATATATAGAACA 57.223 29.630 16.15 16.15 39.31 3.18
968 1233 4.389890 TTGAGTTTTGCAGCAGAATGTT 57.610 36.364 0.99 0.00 39.31 2.71
1040 1305 5.335269 CCAACAGCACGTGTAAATTTGGATA 60.335 40.000 18.38 0.00 39.03 2.59
1042 1307 3.243234 CCAACAGCACGTGTAAATTTGGA 60.243 43.478 18.38 0.00 39.03 3.53
1224 1525 0.037326 CGTGCCAGAGCTTGTAGGAA 60.037 55.000 0.00 0.00 40.80 3.36
1576 1877 0.108615 ACGAGGAAGGCGATGAACTG 60.109 55.000 0.00 0.00 0.00 3.16
1664 1965 0.878523 CTTCGTTGTGCCCTTGACGA 60.879 55.000 0.00 0.00 42.08 4.20
1743 2044 1.522806 GATTGCGTCCACCGGCATA 60.523 57.895 0.00 0.00 39.21 3.14
1774 2075 2.345991 CTCGGGGAACTTGCGGAA 59.654 61.111 0.00 0.00 0.00 4.30
1848 2149 3.329889 ATGTCCCTCGCCTTGCCA 61.330 61.111 0.00 0.00 0.00 4.92
1864 2165 0.321653 GTTGTGGCCTCCTCGAACAT 60.322 55.000 3.32 0.00 0.00 2.71
1887 2188 4.351938 TCCTTGACGGTGGTCGCG 62.352 66.667 0.00 0.00 46.49 5.87
2022 2323 0.957395 CCATCGCCAAGTCTGTGCTT 60.957 55.000 0.00 0.00 0.00 3.91
2400 2701 3.521529 GATGAGGTCGATGGCCCGG 62.522 68.421 0.00 0.00 0.00 5.73
2949 3251 1.803289 GACGTACACCCCGTAGACC 59.197 63.158 0.00 0.00 38.92 3.85
3158 3460 3.415457 TCCAAAAATCATGGCAAACCC 57.585 42.857 0.00 0.00 37.88 4.11
3167 3469 2.524306 TCCACCGCTTCCAAAAATCAT 58.476 42.857 0.00 0.00 0.00 2.45
3171 3473 0.382515 CGTTCCACCGCTTCCAAAAA 59.617 50.000 0.00 0.00 0.00 1.94
3335 3637 4.364409 GTCGTTGTCCCGCGCAAC 62.364 66.667 15.40 15.40 41.81 4.17
3336 3638 4.595538 AGTCGTTGTCCCGCGCAA 62.596 61.111 8.75 0.00 0.00 4.85
3342 3644 2.126580 CCGTCGAGTCGTTGTCCC 60.127 66.667 13.12 0.00 0.00 4.46
3345 3647 2.354305 GCACCGTCGAGTCGTTGT 60.354 61.111 13.12 5.53 0.00 3.32
3352 3654 3.989698 ATTGCCGAGCACCGTCGAG 62.990 63.158 0.00 0.00 42.85 4.04
3407 3709 4.022589 ACGTGTCAAGATACGAGGAGAAAA 60.023 41.667 22.88 0.00 46.63 2.29
3417 3719 7.848491 AGAAAACAACTAACGTGTCAAGATAC 58.152 34.615 0.00 0.00 0.00 2.24
3420 3722 5.292589 GGAGAAAACAACTAACGTGTCAAGA 59.707 40.000 0.00 0.00 0.00 3.02
3421 3723 5.499047 GGAGAAAACAACTAACGTGTCAAG 58.501 41.667 0.00 0.00 0.00 3.02
3512 10456 9.656040 ATTACTAACGTTGTATACATTTCACCA 57.344 29.630 11.99 0.00 0.00 4.17
3541 10485 5.461032 AGTGAACATTCTCGAGAAAGAGT 57.539 39.130 30.95 24.73 39.21 3.24
3543 10487 7.831753 AGATTAGTGAACATTCTCGAGAAAGA 58.168 34.615 30.95 12.27 37.61 2.52
3548 10524 7.818493 TTGAAGATTAGTGAACATTCTCGAG 57.182 36.000 5.93 5.93 0.00 4.04
3560 10536 6.554419 TCCATGCGAATTTTGAAGATTAGTG 58.446 36.000 0.00 0.00 0.00 2.74
3574 10550 0.397941 ATGGTCCGATCCATGCGAAT 59.602 50.000 9.83 0.00 45.26 3.34
3616 10592 2.058001 ACCAGCGATGTCGATCCCA 61.058 57.895 6.60 0.00 43.02 4.37
3629 10605 2.671682 GAACTCCCCTCCACCAGC 59.328 66.667 0.00 0.00 0.00 4.85
3637 10613 2.182858 ATCCACCCTCGAACTCCCCT 62.183 60.000 0.00 0.00 0.00 4.79
3642 10618 2.722201 GGCGATCCACCCTCGAACT 61.722 63.158 0.00 0.00 38.38 3.01
3643 10619 2.202892 GGCGATCCACCCTCGAAC 60.203 66.667 0.00 0.00 38.38 3.95
3644 10620 3.833645 CGGCGATCCACCCTCGAA 61.834 66.667 0.00 0.00 38.38 3.71
3670 10646 3.244665 TGCTCACACATCCATCTCACTTT 60.245 43.478 0.00 0.00 0.00 2.66
3696 10674 3.926497 ACGCTAAACCGTCACACG 58.074 55.556 0.00 0.00 42.11 4.49
3755 10919 2.429930 CAACCCTTGGGTGCGAGA 59.570 61.111 12.67 0.00 31.88 4.04
3761 10925 2.201210 CCCTTGCAACCCTTGGGT 59.799 61.111 11.67 5.34 33.49 4.51
3770 10934 2.265182 GCCACTAACGCCCTTGCAA 61.265 57.895 0.00 0.00 37.32 4.08
3783 10947 1.528309 CCAAACCTGTTCGGCCACT 60.528 57.895 2.24 0.00 35.61 4.00
3788 10952 1.333619 CTCAACACCAAACCTGTTCGG 59.666 52.381 0.00 0.00 39.35 4.30
3794 10958 1.006639 ACCAACCTCAACACCAAACCT 59.993 47.619 0.00 0.00 0.00 3.50
3802 10966 0.105964 CGGAGACACCAACCTCAACA 59.894 55.000 0.00 0.00 38.90 3.33
3805 10969 1.616865 CTAACGGAGACACCAACCTCA 59.383 52.381 0.00 0.00 38.90 3.86
3811 10975 1.267806 GACGAACTAACGGAGACACCA 59.732 52.381 0.00 0.00 38.90 4.17
3814 10978 2.620115 ACAAGACGAACTAACGGAGACA 59.380 45.455 0.00 0.00 37.61 3.41
3828 10992 3.163594 GCGATGAATGGAAAACAAGACG 58.836 45.455 0.00 0.00 0.00 4.18
3841 11005 3.204827 GCGGCAGGTGCGATGAAT 61.205 61.111 0.00 0.00 43.26 2.57
3869 11033 3.194861 CAACTCCAGAGAAACACAACGA 58.805 45.455 0.70 0.00 0.00 3.85
3894 11058 1.003112 GGCCACCGTGACATACCAA 60.003 57.895 0.00 0.00 0.00 3.67
3898 11062 2.267642 GCAGGCCACCGTGACATA 59.732 61.111 5.01 0.00 0.00 2.29
3899 11063 4.722700 GGCAGGCCACCGTGACAT 62.723 66.667 5.01 0.00 34.98 3.06
3917 11081 0.107017 ATGAACAATGGAGGCCCTCG 60.107 55.000 4.29 0.00 0.00 4.63
3954 11118 0.035317 TGCTCAGCACACCCTTACTG 59.965 55.000 0.00 0.00 31.71 2.74
3969 11133 3.064324 AAGGCATTGCGGGTGCTC 61.064 61.111 1.91 0.00 42.16 4.26
3977 11141 2.555199 AGATCGTAGACAAGGCATTGC 58.445 47.619 11.69 4.21 42.51 3.56
3981 11145 3.953712 TCAAAGATCGTAGACAAGGCA 57.046 42.857 0.00 0.00 42.51 4.75
3992 11156 4.375272 ACACCAGCTATCATCAAAGATCG 58.625 43.478 0.00 0.00 0.00 3.69
4080 11245 1.019673 CATCGGCTTCACCATCCTTG 58.980 55.000 0.00 0.00 39.03 3.61
4081 11246 0.107017 CCATCGGCTTCACCATCCTT 60.107 55.000 0.00 0.00 39.03 3.36
4152 11317 4.649705 TCCCCACCTCCGAGCCAA 62.650 66.667 0.00 0.00 0.00 4.52
4159 11324 3.813724 CCATGGCTCCCCACCTCC 61.814 72.222 0.00 0.00 45.77 4.30
4186 11353 2.137425 ATCCGCGACAACTCACGTGA 62.137 55.000 18.88 18.88 41.53 4.35
4218 11385 2.251409 ATCATGGCTCCAATCGTCAG 57.749 50.000 0.00 0.00 0.00 3.51
4236 11403 3.887716 GGCAATAGATCTTCAGCACCAAT 59.112 43.478 0.00 0.00 0.00 3.16
4253 11420 1.604593 AAGCAGCTCAACGGGCAAT 60.605 52.632 0.00 0.00 0.00 3.56
4254 11421 2.203337 AAGCAGCTCAACGGGCAA 60.203 55.556 0.00 0.00 0.00 4.52
4270 11437 1.691976 AGGTTCTCATGACGACACCAA 59.308 47.619 17.72 0.00 0.00 3.67
4306 11474 1.072331 GATGGCGATGAACCCCTACAT 59.928 52.381 0.00 0.00 0.00 2.29
4328 11496 2.356432 GCCTAAAACCGACCCTTACCAT 60.356 50.000 0.00 0.00 0.00 3.55
4334 11502 0.769247 ACAAGCCTAAAACCGACCCT 59.231 50.000 0.00 0.00 0.00 4.34
4358 11527 1.830408 CGGAGGAAGGCGAGGAGAT 60.830 63.158 0.00 0.00 0.00 2.75
4400 11569 3.524606 CGGCGAGGATACCGTGGT 61.525 66.667 0.00 0.00 44.46 4.16
4437 11606 1.271379 TGAGCTTTGCTACCCTCAACC 60.271 52.381 0.00 0.00 39.88 3.77
4439 11608 1.977854 TCTGAGCTTTGCTACCCTCAA 59.022 47.619 0.00 0.00 39.88 3.02
4440 11609 1.644509 TCTGAGCTTTGCTACCCTCA 58.355 50.000 0.00 0.00 39.88 3.86
4478 11647 1.073177 GACCGTACAACAACCCATCG 58.927 55.000 0.00 0.00 0.00 3.84
4480 11649 0.680618 TCGACCGTACAACAACCCAT 59.319 50.000 0.00 0.00 0.00 4.00
4493 11662 2.776072 GGAACATTGCGTCGACCG 59.224 61.111 10.58 6.51 40.40 4.79
4500 11670 0.366871 CTCGAGTTCGGAACATTGCG 59.633 55.000 21.86 17.71 43.70 4.85
4505 11675 1.750341 TTGGCCTCGAGTTCGGAACA 61.750 55.000 21.86 1.66 40.29 3.18
4630 11801 1.952102 GCGTTCCACCACCCTATCGA 61.952 60.000 0.00 0.00 0.00 3.59
4639 11810 4.351938 CGACTCCGCGTTCCACCA 62.352 66.667 4.92 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.