Multiple sequence alignment - TraesCS7A01G192300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G192300 chr7A 100.000 3434 0 0 1 3434 150242445 150239012 0.000000e+00 6342.0
1 TraesCS7A01G192300 chr7A 100.000 1872 0 0 3743 5614 150238703 150236832 0.000000e+00 3458.0
2 TraesCS7A01G192300 chr7A 95.192 416 19 1 4925 5340 727126660 727127074 0.000000e+00 656.0
3 TraesCS7A01G192300 chr7A 93.961 414 22 2 4925 5338 548333418 548333008 1.720000e-174 623.0
4 TraesCS7A01G192300 chr7A 90.843 415 32 5 4925 5338 195412116 195411707 8.220000e-153 551.0
5 TraesCS7A01G192300 chr7D 89.495 1761 119 24 1732 3433 149747560 149745807 0.000000e+00 2167.0
6 TraesCS7A01G192300 chr7D 87.550 1486 104 25 113 1583 149748979 149747560 0.000000e+00 1644.0
7 TraesCS7A01G192300 chr7D 93.451 1023 42 3 3779 4801 149745763 149744766 0.000000e+00 1495.0
8 TraesCS7A01G192300 chr7D 94.894 235 6 4 5337 5565 149744642 149744408 4.130000e-96 363.0
9 TraesCS7A01G192300 chr7D 85.455 165 21 3 1712 1874 638018631 638018794 9.670000e-38 169.0
10 TraesCS7A01G192300 chr7D 85.366 164 19 5 1712 1872 607198197 607198358 1.250000e-36 165.0
11 TraesCS7A01G192300 chr7D 86.275 102 11 2 1620 1718 66963067 66962966 2.140000e-19 108.0
12 TraesCS7A01G192300 chr7D 92.424 66 5 0 4844 4909 149744769 149744704 1.670000e-15 95.3
13 TraesCS7A01G192300 chr7B 90.081 1230 79 18 1732 2922 112030826 112029601 0.000000e+00 1555.0
14 TraesCS7A01G192300 chr7B 90.605 958 60 12 3743 4685 112028313 112027371 0.000000e+00 1243.0
15 TraesCS7A01G192300 chr7B 90.034 873 43 19 724 1583 112031667 112030826 0.000000e+00 1090.0
16 TraesCS7A01G192300 chr7B 90.663 407 28 5 3034 3433 112028755 112028352 2.980000e-147 532.0
17 TraesCS7A01G192300 chr7B 95.694 209 6 2 5336 5541 112023157 112022949 3.240000e-87 333.0
18 TraesCS7A01G192300 chr7B 96.410 195 7 0 4730 4924 112023341 112023147 7.020000e-84 322.0
19 TraesCS7A01G192300 chr7B 93.431 137 9 0 2904 3040 112029421 112029285 2.650000e-48 204.0
20 TraesCS7A01G192300 chr7B 86.061 165 19 4 1712 1873 732805171 732805334 2.080000e-39 174.0
21 TraesCS7A01G192300 chr7B 85.119 168 17 5 1712 1874 314863790 314863626 1.250000e-36 165.0
22 TraesCS7A01G192300 chr7B 84.568 162 21 4 1712 1870 732830284 732830444 2.090000e-34 158.0
23 TraesCS7A01G192300 chr7B 85.417 96 6 5 5526 5614 708066931 708066837 5.990000e-15 93.5
24 TraesCS7A01G192300 chr7B 94.231 52 1 2 4798 4847 746315403 746315352 1.680000e-10 78.7
25 TraesCS7A01G192300 chr6A 95.894 414 14 3 4925 5338 572406550 572406960 0.000000e+00 667.0
26 TraesCS7A01G192300 chr6A 84.337 166 22 4 1712 1874 303373985 303374149 5.820000e-35 159.0
27 TraesCS7A01G192300 chr6A 92.000 50 4 0 4798 4847 585964248 585964297 2.810000e-08 71.3
28 TraesCS7A01G192300 chr5D 92.233 412 29 2 4925 5336 362192525 362192933 1.050000e-161 580.0
29 TraesCS7A01G192300 chr5D 91.827 416 26 6 4925 5339 526878151 526877743 1.750000e-159 573.0
30 TraesCS7A01G192300 chr5D 86.444 509 45 8 1118 1618 334232026 334232518 2.300000e-148 536.0
31 TraesCS7A01G192300 chr5D 80.438 685 64 19 1755 2395 334232559 334233217 5.130000e-125 459.0
32 TraesCS7A01G192300 chr5D 88.372 172 17 2 5349 5517 334236761 334236932 2.650000e-48 204.0
33 TraesCS7A01G192300 chr5D 75.064 393 63 18 2572 2948 334233464 334233837 3.500000e-32 150.0
34 TraesCS7A01G192300 chr5D 92.857 98 5 2 4321 4418 334235981 334236076 2.110000e-29 141.0
35 TraesCS7A01G192300 chr5D 97.619 42 1 0 4799 4840 52247589 52247630 7.800000e-09 73.1
36 TraesCS7A01G192300 chr5D 93.023 43 3 0 4798 4840 122204017 122203975 4.700000e-06 63.9
37 TraesCS7A01G192300 chr2A 92.233 412 26 4 4925 5336 732561151 732561556 3.770000e-161 579.0
38 TraesCS7A01G192300 chr4B 92.233 412 23 7 4925 5336 482128456 482128858 4.880000e-160 575.0
39 TraesCS7A01G192300 chr4B 81.436 404 64 9 4912 5312 482125023 482125418 2.520000e-83 320.0
40 TraesCS7A01G192300 chr1D 91.283 413 29 7 4925 5336 395168276 395167870 1.770000e-154 556.0
41 TraesCS7A01G192300 chr1D 83.521 443 61 11 4909 5345 405386677 405387113 2.440000e-108 403.0
42 TraesCS7A01G192300 chr1D 97.500 40 1 0 4798 4837 57502408 57502447 1.010000e-07 69.4
43 TraesCS7A01G192300 chr1D 100.000 28 0 0 722 749 462683372 462683345 1.000000e-02 52.8
44 TraesCS7A01G192300 chr5B 85.658 509 45 9 1118 1618 391047064 391047552 1.400000e-140 510.0
45 TraesCS7A01G192300 chr5B 80.798 677 58 19 1764 2395 391047603 391048252 1.100000e-126 464.0
46 TraesCS7A01G192300 chr5B 76.375 491 75 24 2572 3025 391048504 391048990 5.660000e-55 226.0
47 TraesCS7A01G192300 chr5B 86.145 166 19 4 1712 1874 121734167 121734003 5.780000e-40 176.0
48 TraesCS7A01G192300 chr5B 86.145 166 19 4 1712 1874 509428908 509429072 5.780000e-40 176.0
49 TraesCS7A01G192300 chr5B 85.542 166 20 4 1712 1874 624507714 624507878 2.690000e-38 171.0
50 TraesCS7A01G192300 chr5B 85.542 166 20 4 1712 1874 628084590 628084754 2.690000e-38 171.0
51 TraesCS7A01G192300 chr5B 84.000 175 19 4 5349 5518 391051518 391051688 5.820000e-35 159.0
52 TraesCS7A01G192300 chr5B 90.741 108 9 1 4325 4432 391050741 391050847 5.860000e-30 143.0
53 TraesCS7A01G192300 chr5B 77.828 221 38 8 668 881 107950254 107950470 5.900000e-25 126.0
54 TraesCS7A01G192300 chr5B 91.489 47 3 1 4800 4846 265436787 265436832 4.700000e-06 63.9
55 TraesCS7A01G192300 chr5A 81.804 621 52 18 1755 2342 436078203 436078795 1.100000e-126 464.0
56 TraesCS7A01G192300 chr5A 84.000 425 42 7 1118 1535 436077552 436077957 8.820000e-103 385.0
57 TraesCS7A01G192300 chr5A 86.250 160 16 2 5349 5506 436082087 436082242 9.670000e-38 169.0
58 TraesCS7A01G192300 chr5A 85.106 141 15 6 4282 4419 436081296 436081433 7.580000e-29 139.0
59 TraesCS7A01G192300 chr2D 79.412 238 35 8 661 888 378360066 378360299 7.530000e-34 156.0
60 TraesCS7A01G192300 chr2D 90.909 77 5 1 5538 5612 651527791 651527867 9.950000e-18 102.0
61 TraesCS7A01G192300 chr2D 100.000 43 0 0 4798 4840 560965876 560965834 4.660000e-11 80.5
62 TraesCS7A01G192300 chr6B 86.923 130 15 2 1747 1874 710247861 710247732 1.630000e-30 145.0
63 TraesCS7A01G192300 chr6B 88.506 87 7 2 5531 5614 218219434 218219348 9.950000e-18 102.0
64 TraesCS7A01G192300 chr1A 86.842 114 9 5 1765 1874 527637619 527637508 7.640000e-24 122.0
65 TraesCS7A01G192300 chr3B 92.593 81 4 1 5536 5614 399974033 399974113 1.280000e-21 115.0
66 TraesCS7A01G192300 chr3B 97.561 41 1 0 4800 4840 181496197 181496237 2.810000e-08 71.3
67 TraesCS7A01G192300 chr4D 90.244 82 6 2 5535 5614 449455611 449455692 7.690000e-19 106.0
68 TraesCS7A01G192300 chr4D 95.349 43 2 0 4798 4840 77128947 77128905 1.010000e-07 69.4
69 TraesCS7A01G192300 chr2B 89.535 86 5 3 5533 5614 354073702 354073617 7.690000e-19 106.0
70 TraesCS7A01G192300 chr3D 89.286 84 7 1 5533 5614 362238282 362238365 2.770000e-18 104.0
71 TraesCS7A01G192300 chr3D 95.238 42 2 0 4799 4840 57160222 57160263 3.630000e-07 67.6
72 TraesCS7A01G192300 chr3D 88.235 51 4 1 4800 4850 510331919 510331871 6.070000e-05 60.2
73 TraesCS7A01G192300 chrUn 89.024 82 7 1 5535 5614 135090807 135090726 3.580000e-17 100.0
74 TraesCS7A01G192300 chrUn 89.024 82 7 1 5535 5614 152687663 152687582 3.580000e-17 100.0
75 TraesCS7A01G192300 chr3A 91.667 48 4 0 4800 4847 137597570 137597617 3.630000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G192300 chr7A 150236832 150242445 5613 True 4900.00 6342 100.0000 1 5614 2 chr7A.!!$R3 5613
1 TraesCS7A01G192300 chr7D 149744408 149748979 4571 True 1152.86 2167 91.5628 113 5565 5 chr7D.!!$R2 5452
2 TraesCS7A01G192300 chr7B 112027371 112031667 4296 True 924.80 1555 90.9628 724 4685 5 chr7B.!!$R5 3961
3 TraesCS7A01G192300 chr5D 334232026 334236932 4906 False 298.00 536 84.6350 1118 5517 5 chr5D.!!$F3 4399
4 TraesCS7A01G192300 chr4B 482125023 482128858 3835 False 447.50 575 86.8345 4912 5336 2 chr4B.!!$F1 424
5 TraesCS7A01G192300 chr5B 391047064 391051688 4624 False 300.40 510 83.5144 1118 5518 5 chr5B.!!$F6 4400
6 TraesCS7A01G192300 chr5A 436077552 436082242 4690 False 289.25 464 84.2900 1118 5506 4 chr5A.!!$F1 4388

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
793 801 0.523968 CTGCCGCGAATTTGACATGG 60.524 55.0 8.23 0.00 0.0 3.66 F
1472 1486 0.739561 CTACGCCTGTGAGTACTCCC 59.260 60.0 20.11 9.54 0.0 4.30 F
3044 4150 0.179073 CGGGGCACTTGTCAGATAGG 60.179 60.0 0.00 0.00 0.0 2.57 F
3832 4946 0.685097 TCCACAAGCACCACCTAGTC 59.315 55.0 0.00 0.00 0.0 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1850 1.254026 ACTACACCGTGCTAAGCTCA 58.746 50.000 0.0 0.0 0.00 4.26 R
3240 4349 1.409521 CCCTTGTGTGTGAGGTTTGGA 60.410 52.381 0.0 0.0 0.00 3.53 R
4474 7429 0.462789 AAGGACACGACCGTTCACTT 59.537 50.000 0.0 0.0 34.73 3.16 R
4909 7886 0.603569 CCTCCTGACAAGTACGCACT 59.396 55.000 0.0 0.0 36.19 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.147437 TGTCCCCAAAACTAGAATTATGGT 57.853 37.500 0.00 0.00 0.00 3.55
31 32 7.700846 TGTCCCCAAAACTAGAATTATGGTTA 58.299 34.615 2.02 0.00 0.00 2.85
33 34 8.630037 GTCCCCAAAACTAGAATTATGGTTATG 58.370 37.037 2.02 0.00 0.00 1.90
34 35 8.561769 TCCCCAAAACTAGAATTATGGTTATGA 58.438 33.333 2.02 0.00 0.00 2.15
36 37 9.627123 CCCAAAACTAGAATTATGGTTATGAGA 57.373 33.333 2.02 0.00 0.00 3.27
90 91 9.706691 TTTAAGTGACTAGTGTCCTAAAGATTG 57.293 33.333 0.00 0.00 42.28 2.67
91 92 6.287589 AGTGACTAGTGTCCTAAAGATTGG 57.712 41.667 0.00 0.00 42.28 3.16
92 93 5.187967 AGTGACTAGTGTCCTAAAGATTGGG 59.812 44.000 0.00 0.00 42.28 4.12
93 94 5.187186 GTGACTAGTGTCCTAAAGATTGGGA 59.813 44.000 0.00 0.00 42.28 4.37
97 98 3.459969 AGTGTCCTAAAGATTGGGATCCC 59.540 47.826 25.22 25.22 42.63 3.85
98 99 3.459969 GTGTCCTAAAGATTGGGATCCCT 59.540 47.826 31.05 12.78 42.63 4.20
99 100 4.079730 GTGTCCTAAAGATTGGGATCCCTT 60.080 45.833 31.05 18.67 42.63 3.95
100 101 4.079787 TGTCCTAAAGATTGGGATCCCTTG 60.080 45.833 31.05 10.79 42.63 3.61
102 103 4.984268 TCCTAAAGATTGGGATCCCTTGAT 59.016 41.667 31.05 21.00 35.14 2.57
103 104 5.075493 CCTAAAGATTGGGATCCCTTGATG 58.925 45.833 31.05 13.07 36.94 3.07
105 106 8.900291 CCTAAAGATTGGGATCCCTTGATGGG 62.900 50.000 31.05 18.26 45.16 4.00
248 249 5.821204 AGAACCAATTATATCGCAAACTGC 58.179 37.500 0.00 0.00 40.69 4.40
255 256 8.882736 CCAATTATATCGCAAACTGCATATCTA 58.117 33.333 0.00 0.00 45.36 1.98
287 288 9.086336 CAATTTTACATAACCTATGCAACCAAG 57.914 33.333 0.00 0.00 39.79 3.61
332 333 5.290885 TGAACACATGCTACATGACGTATTC 59.709 40.000 14.17 9.61 0.00 1.75
411 412 9.249053 TCTATGAAATTGTATTTTAGGCCAACA 57.751 29.630 5.01 0.00 0.00 3.33
412 413 9.868277 CTATGAAATTGTATTTTAGGCCAACAA 57.132 29.630 5.01 5.90 34.81 2.83
414 415 9.737844 ATGAAATTGTATTTTAGGCCAACAAAT 57.262 25.926 5.01 8.73 34.08 2.32
417 418 9.665719 AAATTGTATTTTAGGCCAACAAATAGG 57.334 29.630 5.01 0.00 34.08 2.57
418 419 7.784470 TTGTATTTTAGGCCAACAAATAGGT 57.216 32.000 5.01 0.00 0.00 3.08
420 421 7.832769 TGTATTTTAGGCCAACAAATAGGTTC 58.167 34.615 5.01 0.00 0.00 3.62
422 423 6.987403 TTTTAGGCCAACAAATAGGTTCTT 57.013 33.333 5.01 0.00 0.00 2.52
442 443 7.308830 GGTTCTTAAATCTGCAGTCTTGTGATT 60.309 37.037 14.67 1.19 33.97 2.57
443 444 7.137490 TCTTAAATCTGCAGTCTTGTGATTG 57.863 36.000 14.67 0.00 33.37 2.67
545 546 8.732413 TGTAATAACACTCTAACAACTACACG 57.268 34.615 0.00 0.00 0.00 4.49
546 547 8.352201 TGTAATAACACTCTAACAACTACACGT 58.648 33.333 0.00 0.00 0.00 4.49
547 548 9.185192 GTAATAACACTCTAACAACTACACGTT 57.815 33.333 0.00 0.00 35.88 3.99
565 566 6.899114 ACACGTTGGCTTAAAGATTAAGAAG 58.101 36.000 12.73 0.00 0.00 2.85
569 570 6.305638 CGTTGGCTTAAAGATTAAGAAGCAAC 59.694 38.462 12.73 8.49 44.90 4.17
575 576 9.578439 GCTTAAAGATTAAGAAGCAACAATGAT 57.422 29.630 12.73 0.00 43.06 2.45
609 610 9.570488 GACATTAGAGTATTGAGAAGTTACGTT 57.430 33.333 0.00 0.00 0.00 3.99
614 615 8.739649 AGAGTATTGAGAAGTTACGTTACAAC 57.260 34.615 7.52 0.00 0.00 3.32
628 629 5.186404 CGTTACAACGTTAATCTGGAGTG 57.814 43.478 0.00 0.00 46.63 3.51
630 631 5.164119 CGTTACAACGTTAATCTGGAGTGTC 60.164 44.000 0.00 0.00 46.63 3.67
631 632 4.602340 ACAACGTTAATCTGGAGTGTCT 57.398 40.909 0.00 0.00 0.00 3.41
632 633 4.957296 ACAACGTTAATCTGGAGTGTCTT 58.043 39.130 0.00 0.00 0.00 3.01
635 636 5.061920 ACGTTAATCTGGAGTGTCTTCTC 57.938 43.478 0.00 0.00 0.00 2.87
639 647 6.309251 CGTTAATCTGGAGTGTCTTCTCTTTC 59.691 42.308 0.00 0.00 35.11 2.62
642 650 3.960755 TCTGGAGTGTCTTCTCTTTCACA 59.039 43.478 0.00 0.00 35.11 3.58
656 664 8.856490 TTCTCTTTCACAGAAATGCTAAAAAC 57.144 30.769 0.00 0.00 0.00 2.43
658 666 6.205784 TCTTTCACAGAAATGCTAAAAACCG 58.794 36.000 0.00 0.00 0.00 4.44
662 670 3.886505 ACAGAAATGCTAAAAACCGGACA 59.113 39.130 9.46 0.00 0.00 4.02
677 685 4.787551 ACCGGACATCATATTTTAAGGCA 58.212 39.130 9.46 0.00 0.00 4.75
678 686 5.385198 ACCGGACATCATATTTTAAGGCAT 58.615 37.500 9.46 0.00 0.00 4.40
739 747 5.014808 GCATGAGGATGGCAAATTTAGTT 57.985 39.130 0.00 0.00 0.00 2.24
760 768 2.881513 TGGCGAGCACAACAATTTTCTA 59.118 40.909 0.00 0.00 0.00 2.10
779 787 8.514136 TTTTCTAACAATAAAATGAACTGCCG 57.486 30.769 0.00 0.00 0.00 5.69
787 795 1.981254 AATGAACTGCCGCGAATTTG 58.019 45.000 8.23 0.00 0.00 2.32
793 801 0.523968 CTGCCGCGAATTTGACATGG 60.524 55.000 8.23 0.00 0.00 3.66
888 901 1.417890 CTGCTGGATATTCGGGTCCTT 59.582 52.381 0.00 0.00 35.49 3.36
889 902 1.843851 TGCTGGATATTCGGGTCCTTT 59.156 47.619 0.00 0.00 35.49 3.11
922 935 6.177610 TGAAAAGCCAACCGATTTAGAGTAT 58.822 36.000 0.00 0.00 0.00 2.12
923 936 6.093495 TGAAAAGCCAACCGATTTAGAGTATG 59.907 38.462 0.00 0.00 0.00 2.39
925 938 5.864418 AGCCAACCGATTTAGAGTATGTA 57.136 39.130 0.00 0.00 0.00 2.29
927 940 6.456501 AGCCAACCGATTTAGAGTATGTATC 58.543 40.000 0.00 0.00 0.00 2.24
928 941 6.267928 AGCCAACCGATTTAGAGTATGTATCT 59.732 38.462 0.00 0.00 0.00 1.98
929 942 6.366332 GCCAACCGATTTAGAGTATGTATCTG 59.634 42.308 0.00 0.00 0.00 2.90
966 979 3.061139 GTCTAGATGCGAAAAATCGGTCG 60.061 47.826 0.00 0.00 40.24 4.79
1086 1099 2.593956 GGCGACCCCTCTTCCAAGT 61.594 63.158 0.00 0.00 0.00 3.16
1141 1155 4.394712 CCACCACTCGACCCAGCC 62.395 72.222 0.00 0.00 0.00 4.85
1149 1163 4.880537 CGACCCAGCCTAGCAGCG 62.881 72.222 0.00 0.00 38.01 5.18
1358 1372 0.759436 TGCCCTAATCCCCTCTCGTC 60.759 60.000 0.00 0.00 0.00 4.20
1364 1378 0.982852 AATCCCCTCTCGTCATGCCA 60.983 55.000 0.00 0.00 0.00 4.92
1374 1388 1.227999 CGTCATGCCAAGTTCCGTGT 61.228 55.000 0.00 0.00 0.00 4.49
1472 1486 0.739561 CTACGCCTGTGAGTACTCCC 59.260 60.000 20.11 9.54 0.00 4.30
1478 1494 2.803956 CCTGTGAGTACTCCCTACACA 58.196 52.381 20.11 15.69 38.78 3.72
1493 1509 4.122776 CCTACACATCCAATTTCTCTCCG 58.877 47.826 0.00 0.00 0.00 4.63
1494 1510 3.981071 ACACATCCAATTTCTCTCCGA 57.019 42.857 0.00 0.00 0.00 4.55
1518 1540 5.050490 CCAAATGTCTGGATCGGTAGTTAG 58.950 45.833 0.00 0.00 38.96 2.34
1597 1741 4.904251 AGTGATAATGGAGCCACATAGAGT 59.096 41.667 0.00 0.00 32.35 3.24
1599 1743 5.468072 GTGATAATGGAGCCACATAGAGTTG 59.532 44.000 0.00 0.00 0.00 3.16
1614 1758 6.702723 ACATAGAGTTGTTTTAGCACGTTGTA 59.297 34.615 0.00 0.00 0.00 2.41
1618 1762 5.803118 AGTTGTTTTAGCACGTTGTAGTTC 58.197 37.500 0.00 0.00 0.00 3.01
1619 1763 5.583457 AGTTGTTTTAGCACGTTGTAGTTCT 59.417 36.000 0.00 0.00 0.00 3.01
1620 1764 6.093082 AGTTGTTTTAGCACGTTGTAGTTCTT 59.907 34.615 0.00 0.00 0.00 2.52
1621 1765 6.425577 TGTTTTAGCACGTTGTAGTTCTTT 57.574 33.333 0.00 0.00 0.00 2.52
1622 1766 6.844254 TGTTTTAGCACGTTGTAGTTCTTTT 58.156 32.000 0.00 0.00 0.00 2.27
1623 1767 7.306953 TGTTTTAGCACGTTGTAGTTCTTTTT 58.693 30.769 0.00 0.00 0.00 1.94
1644 1788 4.404507 TTTTCGAGAGTATGCAAACTGC 57.595 40.909 0.00 0.00 45.29 4.40
1662 1806 8.836413 GCAAACTGCATACCATAACTTTATAGA 58.164 33.333 0.00 0.00 44.26 1.98
1685 1829 8.627208 AGAAGAAGAGAATTGCAAATACAAGA 57.373 30.769 1.71 0.00 31.96 3.02
1686 1830 8.510505 AGAAGAAGAGAATTGCAAATACAAGAC 58.489 33.333 1.71 0.00 31.96 3.01
1687 1831 6.835914 AGAAGAGAATTGCAAATACAAGACG 58.164 36.000 1.71 0.00 31.96 4.18
1688 1832 6.650807 AGAAGAGAATTGCAAATACAAGACGA 59.349 34.615 1.71 0.00 31.96 4.20
1689 1833 6.170675 AGAGAATTGCAAATACAAGACGAC 57.829 37.500 1.71 0.00 31.96 4.34
1690 1834 5.122396 AGAGAATTGCAAATACAAGACGACC 59.878 40.000 1.71 0.00 31.96 4.79
1691 1835 4.759693 AGAATTGCAAATACAAGACGACCA 59.240 37.500 1.71 0.00 31.96 4.02
1692 1836 3.889196 TTGCAAATACAAGACGACCAC 57.111 42.857 0.00 0.00 0.00 4.16
1693 1837 3.120321 TGCAAATACAAGACGACCACT 57.880 42.857 0.00 0.00 0.00 4.00
1694 1838 3.064207 TGCAAATACAAGACGACCACTC 58.936 45.455 0.00 0.00 0.00 3.51
1695 1839 3.244078 TGCAAATACAAGACGACCACTCT 60.244 43.478 0.00 0.00 0.00 3.24
1696 1840 3.368236 GCAAATACAAGACGACCACTCTC 59.632 47.826 0.00 0.00 0.00 3.20
1697 1841 4.810790 CAAATACAAGACGACCACTCTCT 58.189 43.478 0.00 0.00 0.00 3.10
1698 1842 4.442375 AATACAAGACGACCACTCTCTG 57.558 45.455 0.00 0.00 0.00 3.35
1699 1843 1.693627 ACAAGACGACCACTCTCTGT 58.306 50.000 0.00 0.00 0.00 3.41
1700 1844 1.338337 ACAAGACGACCACTCTCTGTG 59.662 52.381 0.00 0.00 45.80 3.66
1712 1856 4.348863 ACTCTCTGTGAACAATGAGCTT 57.651 40.909 10.44 0.00 32.29 3.74
1713 1857 5.474578 ACTCTCTGTGAACAATGAGCTTA 57.525 39.130 10.44 0.00 32.29 3.09
1714 1858 5.477510 ACTCTCTGTGAACAATGAGCTTAG 58.522 41.667 10.44 1.25 32.29 2.18
1715 1859 4.248859 TCTCTGTGAACAATGAGCTTAGC 58.751 43.478 0.00 0.00 0.00 3.09
1716 1860 3.999001 CTCTGTGAACAATGAGCTTAGCA 59.001 43.478 7.07 0.00 0.00 3.49
1717 1861 3.748048 TCTGTGAACAATGAGCTTAGCAC 59.252 43.478 7.07 0.00 0.00 4.40
1718 1862 2.480037 TGTGAACAATGAGCTTAGCACG 59.520 45.455 7.07 0.00 0.00 5.34
1719 1863 2.076100 TGAACAATGAGCTTAGCACGG 58.924 47.619 7.07 0.00 0.00 4.94
1720 1864 2.076863 GAACAATGAGCTTAGCACGGT 58.923 47.619 7.07 0.00 0.00 4.83
1721 1865 1.442769 ACAATGAGCTTAGCACGGTG 58.557 50.000 7.07 3.15 0.00 4.94
1722 1866 1.270839 ACAATGAGCTTAGCACGGTGT 60.271 47.619 7.07 5.63 0.00 4.16
1723 1867 2.028476 ACAATGAGCTTAGCACGGTGTA 60.028 45.455 7.07 0.00 0.00 2.90
1724 1868 2.586258 ATGAGCTTAGCACGGTGTAG 57.414 50.000 7.07 6.37 0.00 2.74
1725 1869 1.254026 TGAGCTTAGCACGGTGTAGT 58.746 50.000 7.07 0.00 0.00 2.73
1726 1870 1.616865 TGAGCTTAGCACGGTGTAGTT 59.383 47.619 7.07 3.39 0.00 2.24
1727 1871 2.260481 GAGCTTAGCACGGTGTAGTTC 58.740 52.381 7.07 8.62 0.00 3.01
1761 1905 4.635699 AATTACAGTTTCCCCTTCGACT 57.364 40.909 0.00 0.00 0.00 4.18
1807 1975 8.605746 TGAATGACATGCTTTTCTTTTCTTTTG 58.394 29.630 0.00 0.00 0.00 2.44
1904 2078 5.047306 TCTCTTCAGTACGTGAATCCACAAT 60.047 40.000 0.00 0.00 44.44 2.71
1954 2129 1.948104 TTTCGTCTGTTGGTGTGAGG 58.052 50.000 0.00 0.00 0.00 3.86
1980 2173 3.797039 TGCAGTATATCTTGTGCACCTC 58.203 45.455 15.69 0.00 40.93 3.85
1995 2188 2.540361 GCACCTCTTTGATATTGCGCTG 60.540 50.000 9.73 0.00 0.00 5.18
2179 2377 8.255905 GCCATTCTTACTCCTTACAGTTTACTA 58.744 37.037 0.00 0.00 0.00 1.82
2218 2416 4.442375 ACTTCAGGATAGACGTCTTGTG 57.558 45.455 25.44 15.35 0.00 3.33
2300 2507 5.830912 TGAGTTTTTGTTCTATGCAACAGG 58.169 37.500 0.00 0.00 37.57 4.00
2456 2718 7.254761 GGTTTTGTTCCAAGAGGCAAAAATAAG 60.255 37.037 0.00 0.00 40.82 1.73
2532 2859 3.935203 AGACACCTTACATGAAATCAGCG 59.065 43.478 0.00 0.00 0.00 5.18
2735 3073 4.508551 TGCTGTACATCCTCCAAATCAT 57.491 40.909 0.00 0.00 0.00 2.45
2738 3076 4.392940 CTGTACATCCTCCAAATCATCCC 58.607 47.826 0.00 0.00 0.00 3.85
2756 3094 6.475504 TCATCCCAAGCATACATGGTTATAG 58.524 40.000 6.34 0.07 45.69 1.31
2832 3179 8.470002 GTGAATTGATGCCCTAATTAGAAAAGT 58.530 33.333 14.28 0.00 0.00 2.66
2906 3260 7.623278 ACCATCTCCAAATTAACATGGGTAATT 59.377 33.333 9.64 9.64 35.96 1.40
2967 3535 4.935205 TCTAACCACCGTTTTCTGATCATG 59.065 41.667 0.00 0.00 33.17 3.07
3044 4150 0.179073 CGGGGCACTTGTCAGATAGG 60.179 60.000 0.00 0.00 0.00 2.57
3046 4152 1.282157 GGGGCACTTGTCAGATAGGTT 59.718 52.381 0.00 0.00 0.00 3.50
3164 4272 7.251321 ACCTTCATCAGTAATCAAGTTCTCT 57.749 36.000 0.00 0.00 0.00 3.10
3217 4326 6.749118 GGATGACATTGTTTGTAATCTTCAGC 59.251 38.462 3.69 0.00 43.43 4.26
3237 4346 6.715280 TCAGCTTCAGAATCAATCTACCTTT 58.285 36.000 0.00 0.00 36.32 3.11
3238 4347 7.170965 TCAGCTTCAGAATCAATCTACCTTTT 58.829 34.615 0.00 0.00 36.32 2.27
3240 4349 9.118300 CAGCTTCAGAATCAATCTACCTTTTAT 57.882 33.333 0.00 0.00 36.32 1.40
3286 4395 7.590279 CATGCTTCTCATGCAATATATGACAA 58.410 34.615 0.00 0.00 45.20 3.18
3289 4398 7.027760 GCTTCTCATGCAATATATGACAATGG 58.972 38.462 0.00 0.00 31.66 3.16
3290 4399 7.457024 TTCTCATGCAATATATGACAATGGG 57.543 36.000 0.00 0.00 31.66 4.00
3309 4423 5.110814 TGGGTGTTATACAGAGGGAAATG 57.889 43.478 0.00 0.00 0.00 2.32
3336 4450 3.641434 ATCCTTCATCCACTTGTCAGG 57.359 47.619 0.00 0.00 0.00 3.86
3832 4946 0.685097 TCCACAAGCACCACCTAGTC 59.315 55.000 0.00 0.00 0.00 2.59
3847 4961 2.632028 CCTAGTCCACTAGCTGATGCAT 59.368 50.000 0.00 0.00 43.47 3.96
4057 5189 4.572985 AATCAACCGCATTCATGTATGG 57.427 40.909 13.46 1.38 0.00 2.74
4076 5208 5.726980 ATGGTATGTTTGCAACTGTTCAT 57.273 34.783 0.00 2.37 0.00 2.57
4189 5322 7.016153 ACACCCTCTCACTTCACATATTTAA 57.984 36.000 0.00 0.00 0.00 1.52
4215 5348 1.813786 CTAGGTATCTGGCTAGTCGGC 59.186 57.143 0.00 0.00 38.97 5.54
4304 7257 4.188948 GCGTATGCTTCATCTTTCTGAC 57.811 45.455 0.00 0.00 38.39 3.51
4307 7260 5.735324 CGTATGCTTCATCTTTCTGACATG 58.265 41.667 0.00 0.00 0.00 3.21
4351 7306 3.011818 TGCAGCATGGTGTTAATCTGAG 58.988 45.455 24.73 0.00 35.86 3.35
4421 7376 4.467795 TCAACAAGAGAGGAGTAGAATGGG 59.532 45.833 0.00 0.00 0.00 4.00
4425 7380 4.338795 AGAGAGGAGTAGAATGGGTCAA 57.661 45.455 0.00 0.00 0.00 3.18
4451 7406 5.249393 TCTTCAACAAGAGAGGGCTAGAATT 59.751 40.000 0.00 0.00 33.38 2.17
4453 7408 3.810310 ACAAGAGAGGGCTAGAATTCG 57.190 47.619 0.00 0.00 0.00 3.34
4472 7427 8.928733 AGAATTCGTTGTTTCTTATAAGCGTAA 58.071 29.630 7.67 0.00 0.00 3.18
4474 7429 7.405469 TTCGTTGTTTCTTATAAGCGTAACA 57.595 32.000 16.76 16.76 0.00 2.41
4507 7462 3.818773 CGTGTCCTTCCCAACTTTATGTT 59.181 43.478 0.00 0.00 39.92 2.71
4556 7522 7.201848 CCAATGGCAGTTCTTGATGTATTATGT 60.202 37.037 0.25 0.00 0.00 2.29
4577 7551 2.957474 ACCAGTAGTTGCCACCATTTT 58.043 42.857 0.00 0.00 0.00 1.82
4649 7625 3.507233 TGGAGTGATTGCATCTTGAAACC 59.493 43.478 0.00 0.00 0.00 3.27
4749 7725 1.282157 ACATAAACTGGGAGGGAGTGC 59.718 52.381 0.00 0.00 0.00 4.40
4801 7778 4.930463 GCTAGTTTGCCTTCTTCAGTAC 57.070 45.455 0.00 0.00 0.00 2.73
4802 7779 4.570930 GCTAGTTTGCCTTCTTCAGTACT 58.429 43.478 0.00 0.00 0.00 2.73
4803 7780 4.627900 GCTAGTTTGCCTTCTTCAGTACTC 59.372 45.833 0.00 0.00 0.00 2.59
4804 7781 4.009370 AGTTTGCCTTCTTCAGTACTCC 57.991 45.455 0.00 0.00 0.00 3.85
4805 7782 3.075148 GTTTGCCTTCTTCAGTACTCCC 58.925 50.000 0.00 0.00 0.00 4.30
4806 7783 2.327325 TGCCTTCTTCAGTACTCCCT 57.673 50.000 0.00 0.00 0.00 4.20
4807 7784 2.621070 TGCCTTCTTCAGTACTCCCTT 58.379 47.619 0.00 0.00 0.00 3.95
4808 7785 2.979678 TGCCTTCTTCAGTACTCCCTTT 59.020 45.455 0.00 0.00 0.00 3.11
4809 7786 3.244561 TGCCTTCTTCAGTACTCCCTTTG 60.245 47.826 0.00 0.00 0.00 2.77
4810 7787 3.244596 GCCTTCTTCAGTACTCCCTTTGT 60.245 47.826 0.00 0.00 0.00 2.83
4811 7788 4.020485 GCCTTCTTCAGTACTCCCTTTGTA 60.020 45.833 0.00 0.00 0.00 2.41
4812 7789 5.512576 GCCTTCTTCAGTACTCCCTTTGTAA 60.513 44.000 0.00 0.00 0.00 2.41
4813 7790 6.531021 CCTTCTTCAGTACTCCCTTTGTAAA 58.469 40.000 0.00 0.00 0.00 2.01
4814 7791 6.651225 CCTTCTTCAGTACTCCCTTTGTAAAG 59.349 42.308 0.00 0.00 35.79 1.85
4837 7814 8.819643 AAGGAATATAAGAGCGTTTAGATCAC 57.180 34.615 0.00 0.00 37.82 3.06
4838 7815 8.184304 AGGAATATAAGAGCGTTTAGATCACT 57.816 34.615 0.00 0.00 37.82 3.41
4839 7816 9.298250 AGGAATATAAGAGCGTTTAGATCACTA 57.702 33.333 0.00 0.00 37.82 2.74
4840 7817 9.562583 GGAATATAAGAGCGTTTAGATCACTAG 57.437 37.037 0.00 0.00 37.82 2.57
4841 7818 9.562583 GAATATAAGAGCGTTTAGATCACTAGG 57.437 37.037 0.00 0.00 37.82 3.02
4842 7819 4.657436 AAGAGCGTTTAGATCACTAGGG 57.343 45.455 0.00 0.00 37.82 3.53
4863 7840 6.890293 AGGGAGTATCAAATTCTAGGAACAC 58.110 40.000 0.00 0.00 36.25 3.32
4902 7879 9.722056 CATACTTCATGCTGTAAAAAGGAATAC 57.278 33.333 0.00 0.00 0.00 1.89
4903 7880 9.686683 ATACTTCATGCTGTAAAAAGGAATACT 57.313 29.630 0.00 0.00 0.00 2.12
4909 7886 9.378551 CATGCTGTAAAAAGGAATACTACACTA 57.621 33.333 0.00 0.00 0.00 2.74
4911 7888 8.591072 TGCTGTAAAAAGGAATACTACACTAGT 58.409 33.333 0.00 0.00 42.68 2.57
4912 7889 8.870879 GCTGTAAAAAGGAATACTACACTAGTG 58.129 37.037 21.44 21.44 39.81 2.74
4913 7890 8.767478 TGTAAAAAGGAATACTACACTAGTGC 57.233 34.615 22.90 4.37 39.81 4.40
4914 7891 6.963049 AAAAAGGAATACTACACTAGTGCG 57.037 37.500 22.90 15.90 39.81 5.34
4915 7892 5.656213 AAAGGAATACTACACTAGTGCGT 57.344 39.130 22.90 20.46 39.81 5.24
4917 7894 5.747951 AGGAATACTACACTAGTGCGTAC 57.252 43.478 22.90 12.23 39.81 3.67
4918 7895 5.435291 AGGAATACTACACTAGTGCGTACT 58.565 41.667 22.90 11.87 39.81 2.73
4921 7898 6.404074 GGAATACTACACTAGTGCGTACTTGT 60.404 42.308 22.90 13.51 42.33 3.16
4922 7899 4.416505 ACTACACTAGTGCGTACTTGTC 57.583 45.455 22.90 0.00 40.18 3.18
4923 7900 3.817084 ACTACACTAGTGCGTACTTGTCA 59.183 43.478 22.90 8.01 40.18 3.58
4924 7901 3.284323 ACACTAGTGCGTACTTGTCAG 57.716 47.619 22.90 8.50 40.18 3.51
4925 7902 2.030185 ACACTAGTGCGTACTTGTCAGG 60.030 50.000 22.90 9.53 40.18 3.86
4926 7903 2.228103 CACTAGTGCGTACTTGTCAGGA 59.772 50.000 16.77 0.00 40.18 3.86
4928 7905 0.603569 AGTGCGTACTTGTCAGGAGG 59.396 55.000 0.00 0.00 31.66 4.30
4939 10107 1.144913 TGTCAGGAGGGGAACTTTTGG 59.855 52.381 0.00 0.00 0.00 3.28
5058 10226 8.211629 ACCTTTCATTGTACTAGTGAGAAAAGT 58.788 33.333 5.39 5.87 0.00 2.66
5061 10229 9.832445 TTTCATTGTACTAGTGAGAAAAGTTCT 57.168 29.630 5.39 0.00 44.21 3.01
5066 10234 9.525409 TTGTACTAGTGAGAAAAGTTCTACAAC 57.475 33.333 5.39 0.00 40.87 3.32
5069 10237 8.649973 ACTAGTGAGAAAAGTTCTACAACAAG 57.350 34.615 0.00 0.00 40.87 3.16
5132 10343 9.669353 GTTTTGGTCAATATAGCATGAATAGTG 57.331 33.333 0.00 3.30 0.00 2.74
5177 10388 3.687212 TGTCTTTTTCGCTGTGAAGTCAA 59.313 39.130 3.65 0.00 37.99 3.18
5316 10565 6.455647 CCATATAGGGTGTATATACATGCGG 58.544 44.000 18.27 7.49 38.63 5.69
5320 10569 2.829720 GGGTGTATATACATGCGGGAGA 59.170 50.000 18.27 0.00 38.63 3.71
5381 10636 5.944599 TGTACCTTTGGTTTGTCAGTTTGTA 59.055 36.000 0.00 0.00 37.09 2.41
5559 10820 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
5565 10826 4.414182 TCCCTCCGTCCCATAATGTAAAAT 59.586 41.667 0.00 0.00 0.00 1.82
5566 10827 4.518970 CCCTCCGTCCCATAATGTAAAATG 59.481 45.833 0.00 0.00 0.00 2.32
5567 10828 4.023193 CCTCCGTCCCATAATGTAAAATGC 60.023 45.833 0.00 0.00 0.00 3.56
5568 10829 3.886505 TCCGTCCCATAATGTAAAATGCC 59.113 43.478 0.00 0.00 0.00 4.40
5569 10830 3.888930 CCGTCCCATAATGTAAAATGCCT 59.111 43.478 0.00 0.00 0.00 4.75
5570 10831 4.340950 CCGTCCCATAATGTAAAATGCCTT 59.659 41.667 0.00 0.00 0.00 4.35
5571 10832 5.163457 CCGTCCCATAATGTAAAATGCCTTT 60.163 40.000 0.00 0.00 0.00 3.11
5572 10833 6.337356 CGTCCCATAATGTAAAATGCCTTTT 58.663 36.000 5.05 5.05 38.17 2.27
5573 10834 6.255453 CGTCCCATAATGTAAAATGCCTTTTG 59.745 38.462 9.65 0.00 36.09 2.44
5574 10835 7.327214 GTCCCATAATGTAAAATGCCTTTTGA 58.673 34.615 9.65 0.00 36.09 2.69
5575 10836 7.277760 GTCCCATAATGTAAAATGCCTTTTGAC 59.722 37.037 9.65 0.61 36.09 3.18
5576 10837 7.180051 TCCCATAATGTAAAATGCCTTTTGACT 59.820 33.333 9.65 0.00 36.09 3.41
5577 10838 8.474025 CCCATAATGTAAAATGCCTTTTGACTA 58.526 33.333 9.65 0.00 36.09 2.59
5578 10839 9.868277 CCATAATGTAAAATGCCTTTTGACTAA 57.132 29.630 9.65 0.00 36.09 2.24
5584 10845 9.073475 TGTAAAATGCCTTTTGACTAATGTAGT 57.927 29.630 9.65 0.00 37.46 2.73
5585 10846 9.341899 GTAAAATGCCTTTTGACTAATGTAGTG 57.658 33.333 9.65 0.00 36.20 2.74
5586 10847 7.524717 AAATGCCTTTTGACTAATGTAGTGT 57.475 32.000 0.00 0.00 39.59 3.55
5587 10848 6.743575 ATGCCTTTTGACTAATGTAGTGTC 57.256 37.500 0.00 0.00 39.59 3.67
5588 10849 5.616270 TGCCTTTTGACTAATGTAGTGTCA 58.384 37.500 0.00 0.00 39.59 3.58
5589 10850 6.058833 TGCCTTTTGACTAATGTAGTGTCAA 58.941 36.000 0.00 0.00 45.31 3.18
5611 10872 4.434713 AAAACGTCTTGCATTATGGGAC 57.565 40.909 0.00 0.00 0.00 4.46
5613 10874 0.937304 CGTCTTGCATTATGGGACGG 59.063 55.000 0.00 0.00 43.69 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.147437 ACCATAATTCTAGTTTTGGGGACA 57.853 37.500 7.26 0.00 35.35 4.02
9 10 8.760980 TCATAACCATAATTCTAGTTTTGGGG 57.239 34.615 7.26 0.00 35.35 4.96
10 11 9.627123 TCTCATAACCATAATTCTAGTTTTGGG 57.373 33.333 7.26 0.00 35.35 4.12
67 68 6.295916 CCCAATCTTTAGGACACTAGTCACTT 60.296 42.308 0.00 0.00 46.80 3.16
68 69 5.187967 CCCAATCTTTAGGACACTAGTCACT 59.812 44.000 0.00 0.00 46.80 3.41
69 70 5.187186 TCCCAATCTTTAGGACACTAGTCAC 59.813 44.000 0.00 0.00 46.80 3.67
70 71 5.338632 TCCCAATCTTTAGGACACTAGTCA 58.661 41.667 0.00 0.00 46.80 3.41
71 72 5.934402 TCCCAATCTTTAGGACACTAGTC 57.066 43.478 0.00 0.00 44.21 2.59
73 74 5.221742 GGGATCCCAATCTTTAGGACACTAG 60.222 48.000 26.95 0.00 35.81 2.57
75 76 3.459969 GGGATCCCAATCTTTAGGACACT 59.540 47.826 26.95 0.00 35.81 3.55
76 77 3.459969 AGGGATCCCAATCTTTAGGACAC 59.540 47.826 32.69 0.00 38.92 3.67
77 78 3.747852 AGGGATCCCAATCTTTAGGACA 58.252 45.455 32.69 0.00 38.92 4.02
78 79 4.166144 TCAAGGGATCCCAATCTTTAGGAC 59.834 45.833 32.69 0.25 38.92 3.85
79 80 4.379875 TCAAGGGATCCCAATCTTTAGGA 58.620 43.478 32.69 12.37 38.92 2.94
80 81 4.796110 TCAAGGGATCCCAATCTTTAGG 57.204 45.455 32.69 10.34 38.92 2.69
81 82 5.075493 CCATCAAGGGATCCCAATCTTTAG 58.925 45.833 32.69 13.47 38.92 1.85
82 83 5.065613 CCATCAAGGGATCCCAATCTTTA 57.934 43.478 32.69 10.07 38.92 1.85
97 98 8.279970 TGAACACTGATATAAAACCCATCAAG 57.720 34.615 0.00 0.00 0.00 3.02
98 99 8.642935 TTGAACACTGATATAAAACCCATCAA 57.357 30.769 0.00 0.00 0.00 2.57
99 100 8.821686 ATTGAACACTGATATAAAACCCATCA 57.178 30.769 0.00 0.00 0.00 3.07
145 146 8.604640 AATGTATGAATTTGCAACAATGTCAA 57.395 26.923 0.00 0.00 0.00 3.18
255 256 8.640651 TGCATAGGTTATGTAAAATTGCATCAT 58.359 29.630 0.00 0.00 38.43 2.45
263 264 8.588290 TCTTGGTTGCATAGGTTATGTAAAAT 57.412 30.769 0.00 0.00 41.32 1.82
301 302 7.254556 CGTCATGTAGCATGTGTTCAATTCTAT 60.255 37.037 8.68 0.00 0.00 1.98
405 406 6.531594 GCAGATTTAAGAACCTATTTGTTGGC 59.468 38.462 0.00 0.00 0.00 4.52
409 410 7.885399 AGACTGCAGATTTAAGAACCTATTTGT 59.115 33.333 23.35 0.00 0.00 2.83
410 411 8.273780 AGACTGCAGATTTAAGAACCTATTTG 57.726 34.615 23.35 0.00 0.00 2.32
411 412 8.734386 CAAGACTGCAGATTTAAGAACCTATTT 58.266 33.333 23.35 0.00 0.00 1.40
412 413 7.885399 ACAAGACTGCAGATTTAAGAACCTATT 59.115 33.333 23.35 0.00 0.00 1.73
413 414 7.335422 CACAAGACTGCAGATTTAAGAACCTAT 59.665 37.037 23.35 0.00 0.00 2.57
414 415 6.650807 CACAAGACTGCAGATTTAAGAACCTA 59.349 38.462 23.35 0.00 0.00 3.08
415 416 5.471456 CACAAGACTGCAGATTTAAGAACCT 59.529 40.000 23.35 0.00 0.00 3.50
416 417 5.470098 TCACAAGACTGCAGATTTAAGAACC 59.530 40.000 23.35 0.00 0.00 3.62
417 418 6.545504 TCACAAGACTGCAGATTTAAGAAC 57.454 37.500 23.35 0.19 0.00 3.01
418 419 7.229306 ACAATCACAAGACTGCAGATTTAAGAA 59.771 33.333 23.35 0.00 31.69 2.52
420 421 6.906659 ACAATCACAAGACTGCAGATTTAAG 58.093 36.000 23.35 7.37 31.69 1.85
422 423 6.882610 AACAATCACAAGACTGCAGATTTA 57.117 33.333 23.35 3.41 31.69 1.40
451 452 8.277490 ACAACTATCACAAGACTATTCGTAGA 57.723 34.615 0.00 0.00 0.00 2.59
545 546 7.145323 TGTTGCTTCTTAATCTTTAAGCCAAC 58.855 34.615 18.36 18.36 42.87 3.77
546 547 7.283625 TGTTGCTTCTTAATCTTTAAGCCAA 57.716 32.000 0.00 3.97 42.87 4.52
547 548 6.892658 TGTTGCTTCTTAATCTTTAAGCCA 57.107 33.333 0.00 0.00 42.87 4.75
558 559 9.761504 TCAAAATGAATCATTGTTGCTTCTTAA 57.238 25.926 9.47 0.00 34.04 1.85
565 566 9.142515 TCTAATGTCAAAATGAATCATTGTTGC 57.857 29.630 9.47 11.43 34.04 4.17
609 610 5.717078 AGACACTCCAGATTAACGTTGTA 57.283 39.130 11.99 0.00 0.00 2.41
611 612 5.230942 AGAAGACACTCCAGATTAACGTTG 58.769 41.667 11.99 0.00 0.00 4.10
614 615 5.317733 AGAGAAGACACTCCAGATTAACG 57.682 43.478 0.00 0.00 37.60 3.18
621 622 4.038522 TCTGTGAAAGAGAAGACACTCCAG 59.961 45.833 0.00 0.00 30.81 3.86
631 632 7.920682 GGTTTTTAGCATTTCTGTGAAAGAGAA 59.079 33.333 0.00 0.00 45.33 2.87
632 633 7.425606 GGTTTTTAGCATTTCTGTGAAAGAGA 58.574 34.615 0.00 0.00 35.91 3.10
635 636 5.402270 CCGGTTTTTAGCATTTCTGTGAAAG 59.598 40.000 0.00 0.00 0.00 2.62
639 647 4.226761 GTCCGGTTTTTAGCATTTCTGTG 58.773 43.478 0.00 0.00 0.00 3.66
642 650 4.764823 TGATGTCCGGTTTTTAGCATTTCT 59.235 37.500 0.00 0.00 0.00 2.52
656 664 5.964958 ATGCCTTAAAATATGATGTCCGG 57.035 39.130 0.00 0.00 0.00 5.14
658 666 9.013229 TGTCATATGCCTTAAAATATGATGTCC 57.987 33.333 13.89 6.33 43.86 4.02
700 708 9.758021 ATCCTCATGCCAATATAAATTGTCATA 57.242 29.630 0.00 0.00 39.12 2.15
702 710 7.039574 CCATCCTCATGCCAATATAAATTGTCA 60.040 37.037 0.00 0.00 40.84 3.58
713 721 1.868713 TTTGCCATCCTCATGCCAAT 58.131 45.000 0.00 0.00 27.87 3.16
715 723 1.868713 AATTTGCCATCCTCATGCCA 58.131 45.000 0.00 0.00 0.00 4.92
721 729 3.734902 CGCCAACTAAATTTGCCATCCTC 60.735 47.826 0.00 0.00 0.00 3.71
739 747 1.680735 AGAAAATTGTTGTGCTCGCCA 59.319 42.857 0.00 0.00 0.00 5.69
760 768 3.057876 TCGCGGCAGTTCATTTTATTGTT 60.058 39.130 6.13 0.00 0.00 2.83
779 787 3.763097 TGATGACCATGTCAAATTCGC 57.237 42.857 0.46 0.00 45.96 4.70
787 795 5.393962 GCAAGTTTAGTTGATGACCATGTC 58.606 41.667 1.56 0.00 0.00 3.06
793 801 3.364964 CCGTGGCAAGTTTAGTTGATGAC 60.365 47.826 0.00 0.00 0.00 3.06
843 852 8.910944 AGATGTCAGATTTTTAGCATAGCAAAT 58.089 29.630 0.00 0.00 0.00 2.32
844 853 8.186163 CAGATGTCAGATTTTTAGCATAGCAAA 58.814 33.333 0.00 0.00 0.00 3.68
845 854 7.680350 GCAGATGTCAGATTTTTAGCATAGCAA 60.680 37.037 0.00 0.00 0.00 3.91
868 881 1.051812 AGGACCCGAATATCCAGCAG 58.948 55.000 0.00 0.00 37.47 4.24
894 907 6.574350 TCTAAATCGGTTGGCTTTTCAAAAA 58.426 32.000 0.00 0.00 0.00 1.94
897 910 4.825085 ACTCTAAATCGGTTGGCTTTTCAA 59.175 37.500 0.00 0.00 0.00 2.69
922 935 6.770785 AGACCAACTTTGCTAAAACAGATACA 59.229 34.615 0.00 0.00 0.00 2.29
923 936 7.203255 AGACCAACTTTGCTAAAACAGATAC 57.797 36.000 0.00 0.00 0.00 2.24
925 938 7.224297 TCTAGACCAACTTTGCTAAAACAGAT 58.776 34.615 0.00 0.00 0.00 2.90
927 940 6.861065 TCTAGACCAACTTTGCTAAAACAG 57.139 37.500 0.00 0.00 0.00 3.16
928 941 6.293955 GCATCTAGACCAACTTTGCTAAAACA 60.294 38.462 0.00 0.00 0.00 2.83
929 942 6.086871 GCATCTAGACCAACTTTGCTAAAAC 58.913 40.000 0.00 0.00 0.00 2.43
966 979 4.047822 CAGCCGAGATCAACACTAATCTC 58.952 47.826 0.00 2.91 42.88 2.75
1086 1099 2.362503 AGGTGAGGACGATGGCGA 60.363 61.111 0.00 0.00 41.64 5.54
1141 1155 4.914420 CCGCCGACTCGCTGCTAG 62.914 72.222 0.00 0.00 0.00 3.42
1283 1297 1.062581 TCCATGAGGGAGGAGAGGAAG 60.063 57.143 0.00 0.00 42.15 3.46
1358 1372 2.126467 CAAAACACGGAACTTGGCATG 58.874 47.619 0.00 0.00 0.00 4.06
1364 1378 2.946990 ACGGAATCAAAACACGGAACTT 59.053 40.909 0.00 0.00 0.00 2.66
1374 1388 2.558821 CGCGCCACGGAATCAAAA 59.441 55.556 0.00 0.00 38.44 2.44
1472 1486 4.806247 GTCGGAGAGAAATTGGATGTGTAG 59.194 45.833 0.00 0.00 36.95 2.74
1478 1494 4.301072 TTTGGTCGGAGAGAAATTGGAT 57.699 40.909 0.00 0.00 36.95 3.41
1494 1510 2.838202 ACTACCGATCCAGACATTTGGT 59.162 45.455 0.00 0.00 39.35 3.67
1597 1741 6.425577 AAGAACTACAACGTGCTAAAACAA 57.574 33.333 0.00 0.00 0.00 2.83
1599 1743 7.730067 AAAAAGAACTACAACGTGCTAAAAC 57.270 32.000 0.00 0.00 0.00 2.43
1622 1766 4.783242 GCAGTTTGCATACTCTCGAAAAA 58.217 39.130 6.86 0.00 44.26 1.94
1623 1767 4.404507 GCAGTTTGCATACTCTCGAAAA 57.595 40.909 6.86 0.00 44.26 2.29
1636 1780 8.836413 TCTATAAAGTTATGGTATGCAGTTTGC 58.164 33.333 0.00 0.00 45.29 3.68
1659 1803 9.725019 TCTTGTATTTGCAATTCTCTTCTTCTA 57.275 29.630 0.00 0.00 0.00 2.10
1660 1804 8.510505 GTCTTGTATTTGCAATTCTCTTCTTCT 58.489 33.333 0.00 0.00 0.00 2.85
1661 1805 7.479916 CGTCTTGTATTTGCAATTCTCTTCTTC 59.520 37.037 0.00 0.00 0.00 2.87
1662 1806 7.173218 TCGTCTTGTATTTGCAATTCTCTTCTT 59.827 33.333 0.00 0.00 0.00 2.52
1663 1807 6.650807 TCGTCTTGTATTTGCAATTCTCTTCT 59.349 34.615 0.00 0.00 0.00 2.85
1664 1808 6.738649 GTCGTCTTGTATTTGCAATTCTCTTC 59.261 38.462 0.00 0.00 0.00 2.87
1665 1809 6.348540 GGTCGTCTTGTATTTGCAATTCTCTT 60.349 38.462 0.00 0.00 0.00 2.85
1666 1810 5.122396 GGTCGTCTTGTATTTGCAATTCTCT 59.878 40.000 0.00 0.00 0.00 3.10
1667 1811 5.106712 TGGTCGTCTTGTATTTGCAATTCTC 60.107 40.000 0.00 0.00 0.00 2.87
1668 1812 4.759693 TGGTCGTCTTGTATTTGCAATTCT 59.240 37.500 0.00 0.00 0.00 2.40
1669 1813 4.851558 GTGGTCGTCTTGTATTTGCAATTC 59.148 41.667 0.00 0.00 0.00 2.17
1670 1814 4.518970 AGTGGTCGTCTTGTATTTGCAATT 59.481 37.500 0.00 0.00 0.00 2.32
1671 1815 4.072131 AGTGGTCGTCTTGTATTTGCAAT 58.928 39.130 0.00 0.00 0.00 3.56
1672 1816 3.472652 AGTGGTCGTCTTGTATTTGCAA 58.527 40.909 0.00 0.00 0.00 4.08
1673 1817 3.064207 GAGTGGTCGTCTTGTATTTGCA 58.936 45.455 0.00 0.00 0.00 4.08
1674 1818 3.326747 AGAGTGGTCGTCTTGTATTTGC 58.673 45.455 0.00 0.00 0.00 3.68
1675 1819 4.623167 CAGAGAGTGGTCGTCTTGTATTTG 59.377 45.833 0.00 0.00 0.00 2.32
1676 1820 4.281182 ACAGAGAGTGGTCGTCTTGTATTT 59.719 41.667 0.00 0.00 0.00 1.40
1677 1821 3.827302 ACAGAGAGTGGTCGTCTTGTATT 59.173 43.478 0.00 0.00 0.00 1.89
1678 1822 3.191581 CACAGAGAGTGGTCGTCTTGTAT 59.808 47.826 0.00 0.00 44.69 2.29
1679 1823 2.552743 CACAGAGAGTGGTCGTCTTGTA 59.447 50.000 0.00 0.00 44.69 2.41
1680 1824 1.338337 CACAGAGAGTGGTCGTCTTGT 59.662 52.381 0.00 0.00 44.69 3.16
1681 1825 2.057503 CACAGAGAGTGGTCGTCTTG 57.942 55.000 0.00 0.00 44.69 3.02
1691 1835 4.348863 AAGCTCATTGTTCACAGAGAGT 57.651 40.909 10.57 0.00 33.75 3.24
1692 1836 4.329528 GCTAAGCTCATTGTTCACAGAGAG 59.670 45.833 0.00 4.10 34.10 3.20
1693 1837 4.248859 GCTAAGCTCATTGTTCACAGAGA 58.751 43.478 0.00 0.00 0.00 3.10
1694 1838 3.999001 TGCTAAGCTCATTGTTCACAGAG 59.001 43.478 0.00 0.00 0.00 3.35
1695 1839 3.748048 GTGCTAAGCTCATTGTTCACAGA 59.252 43.478 0.00 0.00 0.00 3.41
1696 1840 3.424039 CGTGCTAAGCTCATTGTTCACAG 60.424 47.826 0.00 0.00 0.00 3.66
1697 1841 2.480037 CGTGCTAAGCTCATTGTTCACA 59.520 45.455 0.00 0.00 0.00 3.58
1698 1842 2.159653 CCGTGCTAAGCTCATTGTTCAC 60.160 50.000 0.00 0.00 0.00 3.18
1699 1843 2.076100 CCGTGCTAAGCTCATTGTTCA 58.924 47.619 0.00 0.00 0.00 3.18
1700 1844 2.076863 ACCGTGCTAAGCTCATTGTTC 58.923 47.619 0.00 0.00 0.00 3.18
1701 1845 1.806542 CACCGTGCTAAGCTCATTGTT 59.193 47.619 0.00 0.00 0.00 2.83
1702 1846 1.270839 ACACCGTGCTAAGCTCATTGT 60.271 47.619 0.00 0.00 0.00 2.71
1703 1847 1.442769 ACACCGTGCTAAGCTCATTG 58.557 50.000 0.00 0.00 0.00 2.82
1704 1848 2.233922 ACTACACCGTGCTAAGCTCATT 59.766 45.455 0.00 0.00 0.00 2.57
1705 1849 1.825474 ACTACACCGTGCTAAGCTCAT 59.175 47.619 0.00 0.00 0.00 2.90
1706 1850 1.254026 ACTACACCGTGCTAAGCTCA 58.746 50.000 0.00 0.00 0.00 4.26
1707 1851 2.094649 AGAACTACACCGTGCTAAGCTC 60.095 50.000 0.00 0.00 0.00 4.09
1708 1852 1.893801 AGAACTACACCGTGCTAAGCT 59.106 47.619 0.00 0.00 0.00 3.74
1709 1853 2.365408 AGAACTACACCGTGCTAAGC 57.635 50.000 0.00 0.00 0.00 3.09
1710 1854 4.395542 AGACTAGAACTACACCGTGCTAAG 59.604 45.833 0.00 0.00 0.00 2.18
1711 1855 4.155462 CAGACTAGAACTACACCGTGCTAA 59.845 45.833 0.00 0.00 0.00 3.09
1712 1856 3.688185 CAGACTAGAACTACACCGTGCTA 59.312 47.826 0.00 0.00 0.00 3.49
1713 1857 2.488545 CAGACTAGAACTACACCGTGCT 59.511 50.000 0.00 0.00 0.00 4.40
1714 1858 2.486982 TCAGACTAGAACTACACCGTGC 59.513 50.000 0.00 0.00 0.00 5.34
1715 1859 4.001652 TCTCAGACTAGAACTACACCGTG 58.998 47.826 0.00 0.00 0.00 4.94
1716 1860 4.020396 TCTCTCAGACTAGAACTACACCGT 60.020 45.833 0.00 0.00 0.00 4.83
1717 1861 4.505808 TCTCTCAGACTAGAACTACACCG 58.494 47.826 0.00 0.00 0.00 4.94
1718 1862 6.821031 TTTCTCTCAGACTAGAACTACACC 57.179 41.667 0.00 0.00 31.62 4.16
1719 1863 9.777575 GTAATTTCTCTCAGACTAGAACTACAC 57.222 37.037 0.00 0.00 31.62 2.90
1720 1864 9.516546 TGTAATTTCTCTCAGACTAGAACTACA 57.483 33.333 0.00 0.00 32.82 2.74
1721 1865 9.997482 CTGTAATTTCTCTCAGACTAGAACTAC 57.003 37.037 0.00 0.00 31.62 2.73
1722 1866 9.742144 ACTGTAATTTCTCTCAGACTAGAACTA 57.258 33.333 0.00 0.00 31.62 2.24
1723 1867 8.644374 ACTGTAATTTCTCTCAGACTAGAACT 57.356 34.615 0.00 0.00 31.62 3.01
1724 1868 9.699703 AAACTGTAATTTCTCTCAGACTAGAAC 57.300 33.333 0.00 0.00 31.62 3.01
1725 1869 9.915629 GAAACTGTAATTTCTCTCAGACTAGAA 57.084 33.333 0.00 0.00 35.96 2.10
1726 1870 8.524487 GGAAACTGTAATTTCTCTCAGACTAGA 58.476 37.037 0.00 0.00 38.43 2.43
1727 1871 7.762159 GGGAAACTGTAATTTCTCTCAGACTAG 59.238 40.741 0.00 0.00 36.33 2.57
1761 1905 4.928263 TCATGTGGACCAATAATCACCAA 58.072 39.130 0.00 0.00 32.32 3.67
1792 1958 8.773645 ACCACAAGAAACAAAAGAAAAGAAAAG 58.226 29.630 0.00 0.00 0.00 2.27
1807 1975 2.682856 TGTTCTGCAGACCACAAGAAAC 59.317 45.455 18.03 9.20 0.00 2.78
1904 2078 4.134563 GGTGAAAAGGCAAACTAGTGAGA 58.865 43.478 0.00 0.00 0.00 3.27
1954 2129 5.506317 GGTGCACAAGATATACTGCAATTCC 60.506 44.000 20.43 0.00 33.95 3.01
1980 2173 4.095483 AGAAAGGACAGCGCAATATCAAAG 59.905 41.667 11.47 0.00 0.00 2.77
1995 2188 5.123027 CAGTGCCTAATTCAAGAGAAAGGAC 59.877 44.000 0.00 0.00 34.87 3.85
2136 2331 1.975407 GCATGCCAGGTCTTGTGCT 60.975 57.895 6.36 0.00 0.00 4.40
2179 2377 8.772250 TCCTGAAGTAGAATAAAGGATGTCATT 58.228 33.333 0.00 0.00 0.00 2.57
2195 2393 5.124138 ACACAAGACGTCTATCCTGAAGTAG 59.876 44.000 20.39 6.56 0.00 2.57
2218 2416 7.148689 GCTTTTGAAAGATCATCCATTGTCAAC 60.149 37.037 7.63 0.00 38.28 3.18
2300 2507 8.106247 TGAGAACAAATGTAATAAAGGGTGTC 57.894 34.615 0.00 0.00 0.00 3.67
2416 2673 5.296531 GGAACAAAACCACATCAAGCAATTT 59.703 36.000 0.00 0.00 0.00 1.82
2552 2879 1.844497 GGCTGTTACCCTATCCCAAGT 59.156 52.381 0.00 0.00 0.00 3.16
2613 2940 3.365969 CCAAACCGTGATTAGAAGGCAAC 60.366 47.826 0.00 0.00 0.00 4.17
2732 3070 3.668141 AACCATGTATGCTTGGGATGA 57.332 42.857 18.01 0.00 42.37 2.92
2735 3073 5.843969 TCTCTATAACCATGTATGCTTGGGA 59.156 40.000 18.01 7.62 42.37 4.37
2774 3119 3.891977 TCTGCTTCAGTACAGAGAACACT 59.108 43.478 0.00 0.00 37.99 3.55
2832 3179 6.351202 CCATTCACATTGCCTTCATTTTCCTA 60.351 38.462 0.00 0.00 0.00 2.94
2932 3485 4.222145 ACGGTGGTTAGATTGCTTCTTCTA 59.778 41.667 0.00 0.00 35.79 2.10
3111 4217 1.683385 AGAAACCAGAAAAGCTGTGGC 59.317 47.619 4.91 0.00 42.48 5.01
3117 4223 5.188327 AGCAAACTAGAAACCAGAAAAGC 57.812 39.130 0.00 0.00 0.00 3.51
3164 4272 8.731275 ACTACTTGCATGCAACTAAATATACA 57.269 30.769 28.80 4.52 0.00 2.29
3169 4277 5.124457 CCTGACTACTTGCATGCAACTAAAT 59.876 40.000 28.80 13.35 0.00 1.40
3217 4326 9.618890 TGGATAAAAGGTAGATTGATTCTGAAG 57.381 33.333 0.00 0.00 35.79 3.02
3237 4346 4.141287 CCTTGTGTGTGAGGTTTGGATAA 58.859 43.478 0.00 0.00 0.00 1.75
3238 4347 3.497763 CCCTTGTGTGTGAGGTTTGGATA 60.498 47.826 0.00 0.00 0.00 2.59
3240 4349 1.409521 CCCTTGTGTGTGAGGTTTGGA 60.410 52.381 0.00 0.00 0.00 3.53
3286 4395 5.193728 ACATTTCCCTCTGTATAACACCCAT 59.806 40.000 0.00 0.00 0.00 4.00
3289 4398 5.741011 TGACATTTCCCTCTGTATAACACC 58.259 41.667 0.00 0.00 0.00 4.16
3290 4399 7.681939 TTTGACATTTCCCTCTGTATAACAC 57.318 36.000 0.00 0.00 0.00 3.32
3309 4423 6.599244 TGACAAGTGGATGAAGGATATTTGAC 59.401 38.462 0.00 0.00 0.00 3.18
3372 4486 7.067494 ACAAGCATGTATTCTGGGAATTAGAAC 59.933 37.037 0.00 0.00 38.24 3.01
3405 4519 8.816894 AGAGTTCTCAAATTAGAGGTACATTGA 58.183 33.333 0.00 0.00 36.30 2.57
3749 4863 2.304092 CTGCAACACTGGATGGCATAT 58.696 47.619 0.00 0.00 33.50 1.78
3794 4908 2.355108 GGACAAGTGGATCAGCTAAGCA 60.355 50.000 0.00 0.00 0.00 3.91
3832 4946 4.063998 TCACTAATGCATCAGCTAGTGG 57.936 45.455 25.41 13.70 43.91 4.00
3847 4961 9.567776 TTTGGACAAGATTAAACAGATCACTAA 57.432 29.630 0.00 0.00 0.00 2.24
3914 5028 3.242011 TGGCATCTCAGTATCAGCCATA 58.758 45.455 0.00 0.00 46.25 2.74
4215 5348 2.409651 GCACCTAGAGCCTCGTCG 59.590 66.667 0.00 0.00 0.00 5.12
4265 5412 1.207390 GCTCATACGCAGAAGCTCTG 58.793 55.000 8.34 8.34 46.90 3.35
4307 7260 9.500864 TGCAAGCAAAATTTCAAAATTAAAGAC 57.499 25.926 1.36 0.00 37.62 3.01
4351 7306 3.309954 GTCCGCAAAATACTCTGGATGTC 59.690 47.826 0.00 0.00 0.00 3.06
4419 7374 4.457257 CCTCTCTTGTTGAAGAATTGACCC 59.543 45.833 0.00 0.00 37.77 4.46
4421 7376 4.083057 GCCCTCTCTTGTTGAAGAATTGAC 60.083 45.833 0.00 0.00 37.77 3.18
4425 7380 4.780021 TCTAGCCCTCTCTTGTTGAAGAAT 59.220 41.667 0.00 0.00 37.77 2.40
4451 7406 7.169645 ACTTGTTACGCTTATAAGAAACAACGA 59.830 33.333 23.37 16.07 34.27 3.85
4453 7408 8.277713 TCACTTGTTACGCTTATAAGAAACAAC 58.722 33.333 23.37 17.26 34.27 3.32
4472 7427 0.529119 GGACACGACCGTTCACTTGT 60.529 55.000 0.00 0.00 0.00 3.16
4474 7429 0.462789 AAGGACACGACCGTTCACTT 59.537 50.000 0.00 0.00 34.73 3.16
4556 7522 3.799432 AAATGGTGGCAACTACTGGTA 57.201 42.857 3.27 0.00 37.61 3.25
4649 7625 2.851805 TCAATCTGATCTGGTCGACG 57.148 50.000 9.92 0.00 0.00 5.12
4749 7725 5.748670 ATCTCCAGATCATCATTCTCCAG 57.251 43.478 0.00 0.00 0.00 3.86
4811 7788 9.262358 GTGATCTAAACGCTCTTATATTCCTTT 57.738 33.333 0.00 0.00 0.00 3.11
4812 7789 8.643324 AGTGATCTAAACGCTCTTATATTCCTT 58.357 33.333 0.00 0.00 0.00 3.36
4813 7790 8.184304 AGTGATCTAAACGCTCTTATATTCCT 57.816 34.615 0.00 0.00 0.00 3.36
4814 7791 9.562583 CTAGTGATCTAAACGCTCTTATATTCC 57.437 37.037 0.00 0.00 0.00 3.01
4815 7792 9.562583 CCTAGTGATCTAAACGCTCTTATATTC 57.437 37.037 0.00 0.00 0.00 1.75
4816 7793 8.524487 CCCTAGTGATCTAAACGCTCTTATATT 58.476 37.037 0.00 0.00 0.00 1.28
4817 7794 7.889073 TCCCTAGTGATCTAAACGCTCTTATAT 59.111 37.037 0.00 0.00 0.00 0.86
4818 7795 7.229308 TCCCTAGTGATCTAAACGCTCTTATA 58.771 38.462 0.00 0.00 0.00 0.98
4819 7796 6.069331 TCCCTAGTGATCTAAACGCTCTTAT 58.931 40.000 0.00 0.00 0.00 1.73
4820 7797 5.443283 TCCCTAGTGATCTAAACGCTCTTA 58.557 41.667 0.00 0.00 0.00 2.10
4821 7798 4.279145 TCCCTAGTGATCTAAACGCTCTT 58.721 43.478 0.00 0.00 0.00 2.85
4822 7799 3.886505 CTCCCTAGTGATCTAAACGCTCT 59.113 47.826 0.00 0.00 0.00 4.09
4823 7800 3.633065 ACTCCCTAGTGATCTAAACGCTC 59.367 47.826 0.00 0.00 33.57 5.03
4824 7801 3.633418 ACTCCCTAGTGATCTAAACGCT 58.367 45.455 0.00 0.00 33.57 5.07
4825 7802 5.241064 TGATACTCCCTAGTGATCTAAACGC 59.759 44.000 0.00 0.00 36.36 4.84
4826 7803 6.879276 TGATACTCCCTAGTGATCTAAACG 57.121 41.667 0.00 0.00 36.36 3.60
4829 7806 9.661954 AGAATTTGATACTCCCTAGTGATCTAA 57.338 33.333 0.00 0.00 36.36 2.10
4831 7808 9.308000 CTAGAATTTGATACTCCCTAGTGATCT 57.692 37.037 0.00 0.00 36.36 2.75
4832 7809 8.527810 CCTAGAATTTGATACTCCCTAGTGATC 58.472 40.741 0.00 0.00 36.36 2.92
4833 7810 8.235230 TCCTAGAATTTGATACTCCCTAGTGAT 58.765 37.037 0.00 0.00 36.36 3.06
4834 7811 7.592736 TCCTAGAATTTGATACTCCCTAGTGA 58.407 38.462 0.00 0.00 36.36 3.41
4835 7812 7.841282 TCCTAGAATTTGATACTCCCTAGTG 57.159 40.000 0.00 0.00 36.36 2.74
4836 7813 7.844779 TGTTCCTAGAATTTGATACTCCCTAGT 59.155 37.037 0.00 0.00 39.91 2.57
4837 7814 8.145122 GTGTTCCTAGAATTTGATACTCCCTAG 58.855 40.741 0.00 0.00 0.00 3.02
4838 7815 7.622081 TGTGTTCCTAGAATTTGATACTCCCTA 59.378 37.037 0.00 0.00 0.00 3.53
4839 7816 6.443849 TGTGTTCCTAGAATTTGATACTCCCT 59.556 38.462 0.00 0.00 0.00 4.20
4840 7817 6.650120 TGTGTTCCTAGAATTTGATACTCCC 58.350 40.000 0.00 0.00 0.00 4.30
4841 7818 7.824779 ACTTGTGTTCCTAGAATTTGATACTCC 59.175 37.037 0.00 0.00 0.00 3.85
4842 7819 8.779354 ACTTGTGTTCCTAGAATTTGATACTC 57.221 34.615 0.00 0.00 0.00 2.59
4896 7873 5.747951 AGTACGCACTAGTGTAGTATTCC 57.252 43.478 25.15 17.12 41.36 3.01
4900 7877 4.996758 TGACAAGTACGCACTAGTGTAGTA 59.003 41.667 23.44 22.19 42.10 1.82
4902 7879 4.404324 CTGACAAGTACGCACTAGTGTAG 58.596 47.826 23.44 19.10 41.09 2.74
4903 7880 3.189910 CCTGACAAGTACGCACTAGTGTA 59.810 47.826 23.44 6.91 39.61 2.90
4909 7886 0.603569 CCTCCTGACAAGTACGCACT 59.396 55.000 0.00 0.00 36.19 4.40
4911 7888 1.541310 CCCCTCCTGACAAGTACGCA 61.541 60.000 0.00 0.00 0.00 5.24
4912 7889 1.218316 CCCCTCCTGACAAGTACGC 59.782 63.158 0.00 0.00 0.00 4.42
4913 7890 1.067071 GTTCCCCTCCTGACAAGTACG 60.067 57.143 0.00 0.00 0.00 3.67
4914 7891 2.258109 AGTTCCCCTCCTGACAAGTAC 58.742 52.381 0.00 0.00 0.00 2.73
4915 7892 2.715763 AGTTCCCCTCCTGACAAGTA 57.284 50.000 0.00 0.00 0.00 2.24
4917 7894 2.887152 CAAAAGTTCCCCTCCTGACAAG 59.113 50.000 0.00 0.00 0.00 3.16
4918 7895 2.424234 CCAAAAGTTCCCCTCCTGACAA 60.424 50.000 0.00 0.00 0.00 3.18
4921 7898 1.529744 ACCAAAAGTTCCCCTCCTGA 58.470 50.000 0.00 0.00 0.00 3.86
4922 7899 2.381752 AACCAAAAGTTCCCCTCCTG 57.618 50.000 0.00 0.00 30.99 3.86
5099 10267 7.759489 TGCTATATTGACCAAAACTTTGTCT 57.241 32.000 1.76 0.00 36.45 3.41
5100 10268 8.243426 TCATGCTATATTGACCAAAACTTTGTC 58.757 33.333 1.76 1.09 36.45 3.18
5102 10270 8.984891 TTCATGCTATATTGACCAAAACTTTG 57.015 30.769 0.00 0.00 37.90 2.77
5106 10274 9.669353 CACTATTCATGCTATATTGACCAAAAC 57.331 33.333 0.00 0.00 0.00 2.43
5109 10277 7.661437 GGTCACTATTCATGCTATATTGACCAA 59.339 37.037 28.60 5.40 46.74 3.67
5110 10278 7.161404 GGTCACTATTCATGCTATATTGACCA 58.839 38.462 28.60 6.58 46.74 4.02
5149 10360 6.589907 ACTTCACAGCGAAAAAGACAAAAATT 59.410 30.769 0.00 0.00 31.71 1.82
5191 10402 7.112844 GCGCACTAATATATCAATTTTCGCAAA 59.887 33.333 0.30 0.00 36.80 3.68
5194 10405 6.077197 TGCGCACTAATATATCAATTTTCGC 58.923 36.000 5.66 0.00 37.24 4.70
5195 10406 7.798516 ACTTGCGCACTAATATATCAATTTTCG 59.201 33.333 11.12 0.00 0.00 3.46
5381 10636 1.881973 CTTGGCAGTGCTGTTGTATGT 59.118 47.619 16.11 0.00 0.00 2.29
5539 10800 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
5559 10820 9.341899 CACTACATTAGTCAAAAGGCATTTTAC 57.658 33.333 9.00 8.13 35.08 2.01
5565 10826 5.616270 TGACACTACATTAGTCAAAAGGCA 58.384 37.500 0.00 0.00 39.15 4.75
5566 10827 6.554334 TTGACACTACATTAGTCAAAAGGC 57.446 37.500 4.90 0.00 45.95 4.35
5589 10850 4.614993 CGTCCCATAATGCAAGACGTTTTT 60.615 41.667 11.91 0.00 43.89 1.94
5590 10851 3.119990 CGTCCCATAATGCAAGACGTTTT 60.120 43.478 11.91 0.00 43.89 2.43
5591 10852 2.418628 CGTCCCATAATGCAAGACGTTT 59.581 45.455 11.91 0.00 43.89 3.60
5592 10853 2.006888 CGTCCCATAATGCAAGACGTT 58.993 47.619 11.91 0.00 43.89 3.99
5593 10854 1.651987 CGTCCCATAATGCAAGACGT 58.348 50.000 11.91 0.00 43.89 4.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.