Multiple sequence alignment - TraesCS7A01G191400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G191400 chr7A 100.000 4049 0 0 765 4813 149302788 149306836 0.000000e+00 7478.0
1 TraesCS7A01G191400 chr7A 100.000 469 0 0 1 469 149302024 149302492 0.000000e+00 867.0
2 TraesCS7A01G191400 chr7A 79.566 553 97 11 4270 4813 149424940 149425485 9.770000e-102 381.0
3 TraesCS7A01G191400 chr7A 97.143 35 1 0 153 187 1366770 1366804 5.200000e-05 60.2
4 TraesCS7A01G191400 chr7D 88.818 1261 93 22 1289 2522 148148280 148149519 0.000000e+00 1504.0
5 TraesCS7A01G191400 chr7D 91.168 668 48 9 2992 3652 148150849 148151512 0.000000e+00 896.0
6 TraesCS7A01G191400 chr7D 88.276 580 35 12 3698 4264 148151508 148152067 0.000000e+00 664.0
7 TraesCS7A01G191400 chr7D 89.904 416 38 1 4270 4685 148152246 148152657 2.550000e-147 532.0
8 TraesCS7A01G191400 chr7D 79.817 545 95 9 4270 4813 148266735 148267265 2.720000e-102 383.0
9 TraesCS7A01G191400 chr7D 86.930 329 24 10 919 1241 148147967 148148282 7.660000e-93 351.0
10 TraesCS7A01G191400 chr7D 83.213 417 32 9 2590 2989 148149547 148149942 9.910000e-92 348.0
11 TraesCS7A01G191400 chr7D 91.579 95 6 2 4719 4813 148152656 148152748 3.910000e-26 130.0
12 TraesCS7A01G191400 chr7D 90.909 55 4 1 187 240 148147564 148147618 6.680000e-09 73.1
13 TraesCS7A01G191400 chr7D 87.500 56 4 2 843 895 148147853 148147908 1.450000e-05 62.1
14 TraesCS7A01G191400 chr7B 84.050 1373 98 61 839 2137 111312773 111314098 0.000000e+00 1210.0
15 TraesCS7A01G191400 chr7B 81.515 1439 144 54 2484 3848 111314501 111315891 0.000000e+00 1072.0
16 TraesCS7A01G191400 chr7B 80.183 545 93 9 4270 4813 111338804 111339334 1.260000e-105 394.0
17 TraesCS7A01G191400 chr7B 85.759 323 24 12 3943 4264 111315916 111316217 6.010000e-84 322.0
18 TraesCS7A01G191400 chr7B 88.667 150 11 3 1 145 111312294 111312442 1.380000e-40 178.0
19 TraesCS7A01G191400 chr7B 86.755 151 15 4 2135 2283 111314172 111314319 3.850000e-36 163.0
20 TraesCS7A01G191400 chr7B 97.143 35 1 0 153 187 725810227 725810193 5.200000e-05 60.2
21 TraesCS7A01G191400 chr6A 96.429 112 3 1 997 1107 544174160 544174271 2.960000e-42 183.0
22 TraesCS7A01G191400 chr6A 90.909 44 4 0 144 187 91866656 91866699 5.200000e-05 60.2
23 TraesCS7A01G191400 chr6D 95.536 112 4 1 997 1107 398178676 398178787 1.380000e-40 178.0
24 TraesCS7A01G191400 chr6B 96.667 90 3 0 1000 1089 595226678 595226767 3.000000e-32 150.0
25 TraesCS7A01G191400 chr1D 91.346 104 8 1 1021 1124 426404868 426404970 1.810000e-29 141.0
26 TraesCS7A01G191400 chr3D 88.235 119 11 3 1020 1136 132608056 132607939 6.500000e-29 139.0
27 TraesCS7A01G191400 chr3D 94.595 37 2 0 151 187 300930566 300930602 1.870000e-04 58.4
28 TraesCS7A01G191400 chr3D 94.286 35 2 0 153 187 522776969 522776935 2.000000e-03 54.7
29 TraesCS7A01G191400 chr3A 88.235 119 11 3 1020 1136 146395806 146395689 6.500000e-29 139.0
30 TraesCS7A01G191400 chr1B 94.318 88 5 0 1021 1108 575923511 575923598 8.400000e-28 135.0
31 TraesCS7A01G191400 chr1B 90.909 44 1 3 146 187 10782320 10782362 6.730000e-04 56.5
32 TraesCS7A01G191400 chr4B 97.222 36 1 0 152 187 558047138 558047103 1.450000e-05 62.1
33 TraesCS7A01G191400 chr2B 94.737 38 2 0 150 187 632380912 632380949 5.200000e-05 60.2
34 TraesCS7A01G191400 chr2D 90.244 41 4 0 153 193 19055547 19055507 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G191400 chr7A 149302024 149306836 4812 False 4172.500000 7478 100.000000 1 4813 2 chr7A.!!$F3 4812
1 TraesCS7A01G191400 chr7A 149424940 149425485 545 False 381.000000 381 79.566000 4270 4813 1 chr7A.!!$F2 543
2 TraesCS7A01G191400 chr7D 148147564 148152748 5184 False 506.688889 1504 88.699667 187 4813 9 chr7D.!!$F2 4626
3 TraesCS7A01G191400 chr7D 148266735 148267265 530 False 383.000000 383 79.817000 4270 4813 1 chr7D.!!$F1 543
4 TraesCS7A01G191400 chr7B 111312294 111316217 3923 False 589.000000 1210 85.349200 1 4264 5 chr7B.!!$F2 4263
5 TraesCS7A01G191400 chr7B 111338804 111339334 530 False 394.000000 394 80.183000 4270 4813 1 chr7B.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.097674 GCAATGCGAGACATGGACAC 59.902 55.0 0.0 0.0 39.60 3.67 F
796 867 0.107214 AGAGAGAGAGAGGCGGTCTG 60.107 60.0 0.0 0.0 34.71 3.51 F
800 871 0.107214 AGAGAGAGGCGGTCTGAGAG 60.107 60.0 0.0 0.0 34.71 3.20 F
1287 1446 0.178958 ACCCTCGTCCAGTGTCTCTT 60.179 55.0 0.0 0.0 0.00 2.85 F
1288 1447 0.244994 CCCTCGTCCAGTGTCTCTTG 59.755 60.0 0.0 0.0 0.00 3.02 F
2967 3371 0.331616 ACCATGGTTACCTGAAGGCC 59.668 55.0 13.0 0.0 39.32 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1427 0.178958 AAGAGACACTGGACGAGGGT 60.179 55.0 0.00 0.0 43.02 4.34 R
1630 1845 0.181350 GTAATCCTCCTGCCCTGTGG 59.819 60.0 0.00 0.0 0.00 4.17 R
2288 2599 0.667184 CCAACCCATTCGCAAAGTGC 60.667 55.0 0.00 0.0 40.69 4.40 R
2531 2885 0.951040 CCACTTGAGACTTGACGCCC 60.951 60.0 0.00 0.0 0.00 6.13 R
3284 4599 1.071605 CGTGCTTTCTTCTTCCTCCG 58.928 55.0 0.00 0.0 0.00 4.63 R
4215 5567 0.754957 CTTTGTGAGCCACCAACCCA 60.755 55.0 3.33 0.0 32.73 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.097674 GCAATGCGAGACATGGACAC 59.902 55.000 0.00 0.00 39.60 3.67
22 23 0.543277 ATGCGAGACATGGACACCAT 59.457 50.000 0.00 0.00 46.37 3.55
24 25 1.134818 TGCGAGACATGGACACCATAC 60.135 52.381 2.86 1.90 43.15 2.39
31 32 4.225942 AGACATGGACACCATACTTGTGAT 59.774 41.667 2.86 0.00 43.15 3.06
52 57 7.232330 TGTGATTGAAAAACATCTATGGTTGGA 59.768 33.333 0.00 0.00 37.84 3.53
115 120 6.378582 GGTTTATTTGACACGACATGAATGT 58.621 36.000 0.00 0.00 45.16 2.71
139 144 2.921121 CGTCGCAGCTGTTTATTGAGTA 59.079 45.455 16.64 0.00 0.00 2.59
144 149 6.801862 GTCGCAGCTGTTTATTGAGTAAAAAT 59.198 34.615 16.64 0.00 34.23 1.82
146 151 8.508062 TCGCAGCTGTTTATTGAGTAAAAATTA 58.492 29.630 16.64 0.00 34.23 1.40
179 184 9.836076 ACTTCTTCCGTAAACAAATATAAAAGC 57.164 29.630 0.00 0.00 0.00 3.51
180 185 8.883789 TTCTTCCGTAAACAAATATAAAAGCG 57.116 30.769 0.00 0.00 0.00 4.68
181 186 8.031848 TCTTCCGTAAACAAATATAAAAGCGT 57.968 30.769 0.00 0.00 0.00 5.07
182 187 8.505625 TCTTCCGTAAACAAATATAAAAGCGTT 58.494 29.630 0.00 0.00 0.00 4.84
183 188 9.120422 CTTCCGTAAACAAATATAAAAGCGTTT 57.880 29.630 2.53 2.53 0.00 3.60
185 190 9.757859 TCCGTAAACAAATATAAAAGCGTTTAG 57.242 29.630 10.55 0.00 32.76 1.85
186 191 9.757859 CCGTAAACAAATATAAAAGCGTTTAGA 57.242 29.630 10.55 6.46 32.76 2.10
204 209 9.404348 GCGTTTAGAATAGTATTAAGAGGTACC 57.596 37.037 2.73 2.73 0.00 3.34
210 215 7.997803 AGAATAGTATTAAGAGGTACCGAGTGT 59.002 37.037 6.18 0.00 0.00 3.55
240 245 8.097038 TCTCTATTAACCATGCCATGAATAGAC 58.903 37.037 17.07 0.00 32.87 2.59
241 246 5.947228 ATTAACCATGCCATGAATAGACG 57.053 39.130 6.18 0.00 0.00 4.18
243 248 3.777106 ACCATGCCATGAATAGACGAT 57.223 42.857 6.18 0.00 0.00 3.73
246 251 4.202398 ACCATGCCATGAATAGACGATCTT 60.202 41.667 6.18 0.00 0.00 2.40
247 252 4.153655 CCATGCCATGAATAGACGATCTTG 59.846 45.833 6.18 0.00 0.00 3.02
248 253 4.670896 TGCCATGAATAGACGATCTTGA 57.329 40.909 0.00 0.00 0.00 3.02
249 254 5.022282 TGCCATGAATAGACGATCTTGAA 57.978 39.130 0.00 0.00 0.00 2.69
250 255 5.427378 TGCCATGAATAGACGATCTTGAAA 58.573 37.500 0.00 0.00 0.00 2.69
251 256 5.525012 TGCCATGAATAGACGATCTTGAAAG 59.475 40.000 0.00 0.00 0.00 2.62
252 257 5.755375 GCCATGAATAGACGATCTTGAAAGA 59.245 40.000 0.00 0.00 39.78 2.52
253 258 6.258727 GCCATGAATAGACGATCTTGAAAGAA 59.741 38.462 0.00 0.00 38.77 2.52
255 260 7.493971 CCATGAATAGACGATCTTGAAAGAACT 59.506 37.037 0.00 0.00 38.77 3.01
256 261 9.521503 CATGAATAGACGATCTTGAAAGAACTA 57.478 33.333 0.00 0.87 38.77 2.24
261 266 7.513190 AGACGATCTTGAAAGAACTATTTCG 57.487 36.000 8.98 8.98 41.21 3.46
262 267 7.091443 AGACGATCTTGAAAGAACTATTTCGT 58.909 34.615 13.84 13.84 42.47 3.85
263 268 7.050281 ACGATCTTGAAAGAACTATTTCGTG 57.950 36.000 13.40 0.00 40.00 4.35
264 269 6.866770 ACGATCTTGAAAGAACTATTTCGTGA 59.133 34.615 13.40 0.00 40.00 4.35
266 271 8.221100 CGATCTTGAAAGAACTATTTCGTGAAA 58.779 33.333 0.00 0.00 41.21 2.69
294 330 4.624364 CCCACACGAGGCAGCACA 62.624 66.667 0.00 0.00 0.00 4.57
306 372 3.276857 AGGCAGCACAACTCATAATCAG 58.723 45.455 0.00 0.00 0.00 2.90
308 374 4.080919 AGGCAGCACAACTCATAATCAGTA 60.081 41.667 0.00 0.00 0.00 2.74
321 387 8.432013 ACTCATAATCAGTAACATAATCCAGCA 58.568 33.333 0.00 0.00 0.00 4.41
322 388 9.445878 CTCATAATCAGTAACATAATCCAGCAT 57.554 33.333 0.00 0.00 0.00 3.79
323 389 9.440773 TCATAATCAGTAACATAATCCAGCATC 57.559 33.333 0.00 0.00 0.00 3.91
324 390 9.223099 CATAATCAGTAACATAATCCAGCATCA 57.777 33.333 0.00 0.00 0.00 3.07
325 391 9.970553 ATAATCAGTAACATAATCCAGCATCAT 57.029 29.630 0.00 0.00 0.00 2.45
328 394 9.797642 ATCAGTAACATAATCCAGCATCATAAA 57.202 29.630 0.00 0.00 0.00 1.40
329 395 9.625747 TCAGTAACATAATCCAGCATCATAAAA 57.374 29.630 0.00 0.00 0.00 1.52
341 407 5.878261 GCATCATAAAATGCTGCTACAAC 57.122 39.130 8.13 0.00 45.95 3.32
342 408 5.342433 GCATCATAAAATGCTGCTACAACA 58.658 37.500 8.13 0.00 45.95 3.33
343 409 5.981315 GCATCATAAAATGCTGCTACAACAT 59.019 36.000 8.13 0.00 45.95 2.71
344 410 6.143438 GCATCATAAAATGCTGCTACAACATC 59.857 38.462 8.13 0.00 45.95 3.06
345 411 5.809464 TCATAAAATGCTGCTACAACATCG 58.191 37.500 0.00 0.00 0.00 3.84
346 412 3.492421 AAAATGCTGCTACAACATCGG 57.508 42.857 0.00 0.00 0.00 4.18
347 413 2.113860 AATGCTGCTACAACATCGGT 57.886 45.000 0.00 0.00 0.00 4.69
348 414 2.979814 ATGCTGCTACAACATCGGTA 57.020 45.000 0.00 0.00 0.00 4.02
349 415 2.293677 TGCTGCTACAACATCGGTAG 57.706 50.000 0.00 0.00 40.89 3.18
350 416 1.822371 TGCTGCTACAACATCGGTAGA 59.178 47.619 0.00 0.00 40.49 2.59
351 417 2.194271 GCTGCTACAACATCGGTAGAC 58.806 52.381 3.90 0.00 40.49 2.59
352 418 2.810650 CTGCTACAACATCGGTAGACC 58.189 52.381 3.90 0.00 40.49 3.85
353 419 1.479323 TGCTACAACATCGGTAGACCC 59.521 52.381 3.90 0.00 40.49 4.46
354 420 1.202498 GCTACAACATCGGTAGACCCC 60.202 57.143 3.90 0.00 40.49 4.95
355 421 2.104967 CTACAACATCGGTAGACCCCA 58.895 52.381 0.00 0.00 40.49 4.96
356 422 1.580059 ACAACATCGGTAGACCCCAT 58.420 50.000 0.00 0.00 0.00 4.00
357 423 1.913419 ACAACATCGGTAGACCCCATT 59.087 47.619 0.00 0.00 0.00 3.16
358 424 2.093128 ACAACATCGGTAGACCCCATTC 60.093 50.000 0.00 0.00 0.00 2.67
359 425 1.874129 ACATCGGTAGACCCCATTCA 58.126 50.000 0.00 0.00 0.00 2.57
360 426 1.762957 ACATCGGTAGACCCCATTCAG 59.237 52.381 0.00 0.00 0.00 3.02
361 427 0.759346 ATCGGTAGACCCCATTCAGC 59.241 55.000 0.00 0.00 0.00 4.26
362 428 0.616395 TCGGTAGACCCCATTCAGCA 60.616 55.000 0.00 0.00 0.00 4.41
363 429 0.251916 CGGTAGACCCCATTCAGCAA 59.748 55.000 0.00 0.00 0.00 3.91
364 430 1.743772 CGGTAGACCCCATTCAGCAAG 60.744 57.143 0.00 0.00 0.00 4.01
365 431 1.408822 GGTAGACCCCATTCAGCAAGG 60.409 57.143 0.00 0.00 0.00 3.61
366 432 0.255890 TAGACCCCATTCAGCAAGGC 59.744 55.000 0.00 0.00 0.00 4.35
367 433 2.037847 ACCCCATTCAGCAAGGCC 59.962 61.111 0.00 0.00 0.00 5.19
368 434 2.037687 CCCCATTCAGCAAGGCCA 59.962 61.111 5.01 0.00 0.00 5.36
369 435 2.353610 CCCCATTCAGCAAGGCCAC 61.354 63.158 5.01 0.00 0.00 5.01
370 436 2.703798 CCCATTCAGCAAGGCCACG 61.704 63.158 5.01 0.00 0.00 4.94
371 437 1.675310 CCATTCAGCAAGGCCACGA 60.675 57.895 5.01 0.00 0.00 4.35
372 438 1.651240 CCATTCAGCAAGGCCACGAG 61.651 60.000 5.01 0.00 0.00 4.18
373 439 0.674581 CATTCAGCAAGGCCACGAGA 60.675 55.000 5.01 0.00 0.00 4.04
374 440 0.392193 ATTCAGCAAGGCCACGAGAG 60.392 55.000 5.01 0.00 0.00 3.20
375 441 2.435586 CAGCAAGGCCACGAGAGG 60.436 66.667 5.01 0.00 0.00 3.69
376 442 2.604686 AGCAAGGCCACGAGAGGA 60.605 61.111 5.01 0.00 0.00 3.71
377 443 1.992277 AGCAAGGCCACGAGAGGAT 60.992 57.895 5.01 0.00 0.00 3.24
378 444 1.522580 GCAAGGCCACGAGAGGATC 60.523 63.158 5.01 0.00 0.00 3.36
379 445 1.144936 CAAGGCCACGAGAGGATCC 59.855 63.158 5.01 2.48 33.66 3.36
380 446 2.427245 AAGGCCACGAGAGGATCCG 61.427 63.158 5.01 0.00 33.66 4.18
381 447 3.917760 GGCCACGAGAGGATCCGG 61.918 72.222 5.98 0.00 33.95 5.14
382 448 3.917760 GCCACGAGAGGATCCGGG 61.918 72.222 5.98 3.84 33.95 5.73
383 449 3.917760 CCACGAGAGGATCCGGGC 61.918 72.222 5.98 0.00 32.11 6.13
384 450 3.917760 CACGAGAGGATCCGGGCC 61.918 72.222 5.98 3.44 33.95 5.80
385 451 4.458829 ACGAGAGGATCCGGGCCA 62.459 66.667 15.32 0.00 33.95 5.36
390 456 1.838846 GAGGATCCGGGCCAGATCA 60.839 63.158 26.73 4.78 41.64 2.92
406 472 3.041211 AGATCAAGTAGGCCACAGCATA 58.959 45.455 5.01 0.00 42.56 3.14
411 477 3.931907 AGTAGGCCACAGCATATGAAA 57.068 42.857 5.01 0.00 42.56 2.69
418 484 2.031314 CCACAGCATATGAAACAGAGCG 59.969 50.000 6.97 0.00 0.00 5.03
424 490 1.358725 TATGAAACAGAGCGCGGCAC 61.359 55.000 8.83 0.00 0.00 5.01
436 507 4.980903 CGGCACCAGCACGCAAAC 62.981 66.667 0.00 0.00 44.61 2.93
437 508 3.595758 GGCACCAGCACGCAAACT 61.596 61.111 0.00 0.00 44.61 2.66
786 857 5.452078 GAGAGAGAGAGAGAGAGAGAGAG 57.548 52.174 0.00 0.00 0.00 3.20
787 858 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
788 859 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
789 860 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
790 861 2.703007 AGAGAGAGAGAGAGAGAGAGGC 59.297 54.545 0.00 0.00 0.00 4.70
791 862 1.414181 AGAGAGAGAGAGAGAGAGGCG 59.586 57.143 0.00 0.00 0.00 5.52
792 863 0.469917 AGAGAGAGAGAGAGAGGCGG 59.530 60.000 0.00 0.00 0.00 6.13
793 864 0.180406 GAGAGAGAGAGAGAGGCGGT 59.820 60.000 0.00 0.00 0.00 5.68
794 865 0.180406 AGAGAGAGAGAGAGGCGGTC 59.820 60.000 0.00 0.00 0.00 4.79
795 866 0.180406 GAGAGAGAGAGAGGCGGTCT 59.820 60.000 0.00 0.00 38.71 3.85
796 867 0.107214 AGAGAGAGAGAGGCGGTCTG 60.107 60.000 0.00 0.00 34.71 3.51
797 868 0.107410 GAGAGAGAGAGGCGGTCTGA 60.107 60.000 0.00 0.00 34.71 3.27
798 869 0.107214 AGAGAGAGAGGCGGTCTGAG 60.107 60.000 0.00 0.00 34.71 3.35
799 870 0.107410 GAGAGAGAGGCGGTCTGAGA 60.107 60.000 0.00 0.00 34.71 3.27
800 871 0.107214 AGAGAGAGGCGGTCTGAGAG 60.107 60.000 0.00 0.00 34.71 3.20
801 872 1.077068 AGAGAGGCGGTCTGAGAGG 60.077 63.158 0.00 0.00 34.71 3.69
802 873 2.757917 AGAGGCGGTCTGAGAGGC 60.758 66.667 0.00 0.00 32.57 4.70
803 874 2.757917 GAGGCGGTCTGAGAGGCT 60.758 66.667 7.87 7.87 43.66 4.58
804 875 1.454111 GAGGCGGTCTGAGAGGCTA 60.454 63.158 8.07 0.00 40.97 3.93
805 876 1.452145 GAGGCGGTCTGAGAGGCTAG 61.452 65.000 8.07 0.00 40.97 3.42
806 877 1.454111 GGCGGTCTGAGAGGCTAGA 60.454 63.158 0.00 0.00 0.00 2.43
807 878 0.825840 GGCGGTCTGAGAGGCTAGAT 60.826 60.000 0.00 0.00 0.00 1.98
825 896 4.453480 AGATAGAGAGAGTGGAGAAGGG 57.547 50.000 0.00 0.00 0.00 3.95
851 958 0.325272 GGTGACCTCCCTCTTCAACC 59.675 60.000 0.00 0.00 0.00 3.77
895 1002 1.732259 GGCACGATACACAACCAAGAG 59.268 52.381 0.00 0.00 0.00 2.85
896 1003 1.128692 GCACGATACACAACCAAGAGC 59.871 52.381 0.00 0.00 0.00 4.09
906 1025 1.480137 CAACCAAGAGCAAACCAACCA 59.520 47.619 0.00 0.00 0.00 3.67
922 1047 3.388308 CAACCACTCACTCACTTCTCAG 58.612 50.000 0.00 0.00 0.00 3.35
923 1048 1.342819 ACCACTCACTCACTTCTCAGC 59.657 52.381 0.00 0.00 0.00 4.26
930 1055 0.906756 CTCACTTCTCAGCTCCCCCA 60.907 60.000 0.00 0.00 0.00 4.96
942 1067 0.693767 CTCCCCCATTCCTCTGCTCT 60.694 60.000 0.00 0.00 0.00 4.09
943 1068 0.984961 TCCCCCATTCCTCTGCTCTG 60.985 60.000 0.00 0.00 0.00 3.35
944 1069 1.153005 CCCCATTCCTCTGCTCTGC 60.153 63.158 0.00 0.00 0.00 4.26
945 1070 1.633915 CCCCATTCCTCTGCTCTGCT 61.634 60.000 0.00 0.00 0.00 4.24
946 1071 1.126488 CCCATTCCTCTGCTCTGCTA 58.874 55.000 0.00 0.00 0.00 3.49
947 1072 1.070445 CCCATTCCTCTGCTCTGCTAG 59.930 57.143 0.00 0.00 0.00 3.42
948 1073 2.037901 CCATTCCTCTGCTCTGCTAGA 58.962 52.381 0.00 0.00 0.00 2.43
958 1083 1.336755 GCTCTGCTAGACTCTGCTACC 59.663 57.143 0.00 0.00 0.00 3.18
967 1116 0.969894 ACTCTGCTACCGCTTCAGTT 59.030 50.000 0.00 0.00 36.97 3.16
970 1119 0.320771 CTGCTACCGCTTCAGTTGGT 60.321 55.000 0.00 0.00 39.80 3.67
972 1121 0.796927 GCTACCGCTTCAGTTGGTTC 59.203 55.000 0.00 0.00 37.20 3.62
973 1122 1.608283 GCTACCGCTTCAGTTGGTTCT 60.608 52.381 0.00 0.00 37.20 3.01
980 1129 2.487265 GCTTCAGTTGGTTCTCCTTCCA 60.487 50.000 0.00 0.00 34.23 3.53
982 1131 4.401925 CTTCAGTTGGTTCTCCTTCCATT 58.598 43.478 0.00 0.00 33.50 3.16
984 1133 4.803452 TCAGTTGGTTCTCCTTCCATTTT 58.197 39.130 0.00 0.00 33.50 1.82
1120 1273 2.228480 ACCGTAATGCCCACACCCT 61.228 57.895 0.00 0.00 0.00 4.34
1124 1277 1.542628 TAATGCCCACACCCTCCCA 60.543 57.895 0.00 0.00 0.00 4.37
1127 1285 3.017581 GCCCACACCCTCCCATCT 61.018 66.667 0.00 0.00 0.00 2.90
1135 1293 0.560688 ACCCTCCCATCTCTCTCTCC 59.439 60.000 0.00 0.00 0.00 3.71
1142 1300 1.953686 CCATCTCTCTCTCCGTCTTCC 59.046 57.143 0.00 0.00 0.00 3.46
1185 1344 1.179174 GGGTTCCAGGAAACACCAGC 61.179 60.000 19.47 0.00 42.04 4.85
1186 1345 0.178990 GGTTCCAGGAAACACCAGCT 60.179 55.000 12.89 0.00 42.04 4.24
1187 1346 0.954452 GTTCCAGGAAACACCAGCTG 59.046 55.000 6.78 6.78 42.04 4.24
1188 1347 0.823356 TTCCAGGAAACACCAGCTGC 60.823 55.000 8.66 0.00 42.04 5.25
1189 1348 1.228367 CCAGGAAACACCAGCTGCT 60.228 57.895 8.66 0.00 42.04 4.24
1190 1349 1.521450 CCAGGAAACACCAGCTGCTG 61.521 60.000 22.44 22.44 42.04 4.41
1202 1361 1.379576 GCTGCTGGGCTCAGGATTT 60.380 57.895 17.16 0.00 40.54 2.17
1232 1391 1.382522 CATCCTGGTCCGGTTTGATG 58.617 55.000 0.00 4.69 0.00 3.07
1240 1399 0.746563 TCCGGTTTGATGGATTCGCC 60.747 55.000 0.00 0.00 37.10 5.54
1245 1404 0.817013 TTTGATGGATTCGCCCTTGC 59.183 50.000 0.00 0.00 34.97 4.01
1259 1418 1.524008 CCTTGCCCGTTCTTGAACCC 61.524 60.000 7.78 0.00 0.00 4.11
1260 1419 1.852067 CTTGCCCGTTCTTGAACCCG 61.852 60.000 7.78 0.00 0.00 5.28
1261 1420 2.031465 GCCCGTTCTTGAACCCGA 59.969 61.111 7.78 0.00 0.00 5.14
1263 1422 1.670083 CCCGTTCTTGAACCCGACC 60.670 63.158 7.78 0.00 0.00 4.79
1265 1424 1.007038 CGTTCTTGAACCCGACCGA 60.007 57.895 7.78 0.00 0.00 4.69
1268 1427 0.828762 TTCTTGAACCCGACCGAGGA 60.829 55.000 0.00 0.00 0.00 3.71
1270 1429 2.502692 CTTGAACCCGACCGAGGACC 62.503 65.000 0.00 0.00 0.00 4.46
1273 1432 4.755507 ACCCGACCGAGGACCCTC 62.756 72.222 5.99 5.99 39.55 4.30
1287 1446 0.178958 ACCCTCGTCCAGTGTCTCTT 60.179 55.000 0.00 0.00 0.00 2.85
1288 1447 0.244994 CCCTCGTCCAGTGTCTCTTG 59.755 60.000 0.00 0.00 0.00 3.02
1293 1452 1.135257 CGTCCAGTGTCTCTTGCCTAG 60.135 57.143 0.00 0.00 0.00 3.02
1321 1480 8.695284 TGTTTGTGTATACAATTTTGAAATCGC 58.305 29.630 7.25 0.00 45.56 4.58
1336 1495 5.160641 TGAAATCGCTGCTAAAATTTCACC 58.839 37.500 17.49 3.19 41.01 4.02
1359 1528 6.822170 ACCTCCGAGAGTAAATATTTTGAACC 59.178 38.462 5.91 0.00 0.00 3.62
1371 1551 8.593492 AAATATTTTGAACCTCTGTTTTGCTC 57.407 30.769 0.00 0.00 33.97 4.26
1387 1567 1.241315 GCTCGTGCTGGGCCTTTTTA 61.241 55.000 4.53 0.00 36.03 1.52
1402 1582 6.039382 GGGCCTTTTTATTACAGGACTATGTG 59.961 42.308 0.84 0.00 35.78 3.21
1420 1600 2.888998 GCCCACCGTGTTCGACAAC 61.889 63.158 0.00 0.00 39.71 3.32
1429 1609 1.154836 GTTCGACAACTTCAGCGCG 60.155 57.895 0.00 0.00 0.00 6.86
1541 1749 3.858503 GCTCCACATTTGCAGTTTCCTTC 60.859 47.826 0.00 0.00 0.00 3.46
1620 1835 2.084546 GGTGGTCTTATTGTGTGGAGC 58.915 52.381 0.00 0.00 0.00 4.70
1630 1845 3.988379 TTGTGTGGAGCTCAATTTGTC 57.012 42.857 17.19 0.00 0.00 3.18
1759 1974 7.284919 TCATGAAGAAGGTGCGTATCTATTA 57.715 36.000 0.00 0.00 0.00 0.98
1761 1976 8.367911 TCATGAAGAAGGTGCGTATCTATTATT 58.632 33.333 0.00 0.00 0.00 1.40
1762 1977 8.651588 CATGAAGAAGGTGCGTATCTATTATTC 58.348 37.037 0.00 0.00 0.00 1.75
1763 1978 7.152645 TGAAGAAGGTGCGTATCTATTATTCC 58.847 38.462 0.00 0.00 0.00 3.01
1768 1983 5.304614 AGGTGCGTATCTATTATTCCACACT 59.695 40.000 0.00 0.00 0.00 3.55
1773 1988 8.727910 TGCGTATCTATTATTCCACACTACTAG 58.272 37.037 0.00 0.00 0.00 2.57
1801 2016 6.334102 AGTTCTATACCATCTTGGATCGAC 57.666 41.667 0.00 0.00 40.96 4.20
1802 2017 5.048643 AGTTCTATACCATCTTGGATCGACG 60.049 44.000 0.00 0.00 40.96 5.12
1803 2018 4.648651 TCTATACCATCTTGGATCGACGA 58.351 43.478 0.00 0.00 40.96 4.20
1829 2044 6.719370 TGGTTTAGCTATTCATTCAGTTGGTT 59.281 34.615 0.00 0.00 0.00 3.67
1830 2045 7.094377 TGGTTTAGCTATTCATTCAGTTGGTTC 60.094 37.037 0.00 0.00 0.00 3.62
1839 2054 6.249035 TCATTCAGTTGGTTCGTTTTATCC 57.751 37.500 0.00 0.00 0.00 2.59
1840 2055 5.182380 TCATTCAGTTGGTTCGTTTTATCCC 59.818 40.000 0.00 0.00 0.00 3.85
1857 2072 6.827586 TTATCCCGTGCTTGTTTATTTTCT 57.172 33.333 0.00 0.00 0.00 2.52
1910 2125 3.264897 CCAGCGTGCCGATAGTGC 61.265 66.667 0.00 0.00 0.00 4.40
1945 2160 1.597742 ATGGTGAGTTGTGTGACTGC 58.402 50.000 0.00 0.00 0.00 4.40
1946 2161 0.541392 TGGTGAGTTGTGTGACTGCT 59.459 50.000 0.00 0.00 0.00 4.24
1947 2162 0.940126 GGTGAGTTGTGTGACTGCTG 59.060 55.000 0.00 0.00 0.00 4.41
1993 2209 2.287188 GGCTGCATATTTGTCCGTGATG 60.287 50.000 0.50 0.00 0.00 3.07
2016 2235 0.666374 GGTTTGTACGTTGCTGCCTT 59.334 50.000 0.00 0.00 0.00 4.35
2104 2327 3.981071 TGTTTCCTGGACTATGGTCAG 57.019 47.619 11.67 6.62 43.77 3.51
2109 2332 4.171878 TCCTGGACTATGGTCAGACTAG 57.828 50.000 11.67 0.00 43.77 2.57
2111 2334 4.017407 TCCTGGACTATGGTCAGACTAGTT 60.017 45.833 11.67 0.00 43.77 2.24
2116 2342 6.183360 TGGACTATGGTCAGACTAGTTATTGC 60.183 42.308 11.67 0.00 43.77 3.56
2121 2347 4.647853 TGGTCAGACTAGTTATTGCGGTAT 59.352 41.667 0.00 0.00 0.00 2.73
2169 2477 6.747414 AGGATAAATGGTACTAGTGCATGA 57.253 37.500 13.26 0.00 0.00 3.07
2203 2513 6.403333 TGAATATGTTACTCAGTTCGTTGC 57.597 37.500 0.00 0.00 31.56 4.17
2208 2518 1.045407 TACTCAGTTCGTTGCCAGGT 58.955 50.000 0.00 0.00 0.00 4.00
2229 2539 1.565759 TCAGCAATTAGTGGCCCAGAT 59.434 47.619 0.00 0.00 0.00 2.90
2232 2542 2.176364 AGCAATTAGTGGCCCAGATGAT 59.824 45.455 0.00 0.00 0.00 2.45
2234 2544 3.755378 GCAATTAGTGGCCCAGATGATAG 59.245 47.826 0.00 0.00 0.00 2.08
2288 2599 2.615912 GGATTGCTTTCTCCTTCCATCG 59.384 50.000 0.00 0.00 0.00 3.84
2320 2631 5.576447 AATGGGTTGGCGTAAGAAAATAG 57.424 39.130 0.00 0.00 43.02 1.73
2381 2735 5.967088 TGTTGAAGTGATAGCTTCTAGGAC 58.033 41.667 0.00 2.88 43.74 3.85
2383 2737 5.843673 TGAAGTGATAGCTTCTAGGACTG 57.156 43.478 0.00 0.00 43.74 3.51
2384 2738 5.265191 TGAAGTGATAGCTTCTAGGACTGT 58.735 41.667 0.00 0.00 43.74 3.55
2385 2739 6.424032 TGAAGTGATAGCTTCTAGGACTGTA 58.576 40.000 0.00 0.00 43.74 2.74
2386 2740 6.890268 TGAAGTGATAGCTTCTAGGACTGTAA 59.110 38.462 0.00 0.00 43.74 2.41
2387 2741 7.561722 TGAAGTGATAGCTTCTAGGACTGTAAT 59.438 37.037 0.00 0.00 43.74 1.89
2420 2774 8.359642 CAAGGAAAACAATCTGGATTTCTGTTA 58.640 33.333 0.00 0.00 31.94 2.41
2438 2792 4.088634 TGTTATCCATTTTTGCTCCTGCT 58.911 39.130 0.00 0.00 40.48 4.24
2456 2810 6.917533 TCCTGCTGAGATTTTGAAAATCTTC 58.082 36.000 27.97 21.37 37.14 2.87
2463 2817 6.808212 TGAGATTTTGAAAATCTTCGAATGCC 59.192 34.615 27.97 16.06 37.14 4.40
2465 2819 2.542766 TGAAAATCTTCGAATGCCGC 57.457 45.000 0.00 0.00 38.37 6.53
2467 2821 1.132262 GAAAATCTTCGAATGCCGCCA 59.868 47.619 0.00 0.00 38.37 5.69
2501 2855 5.649782 ATCCAAAATTCGAGCAACTTCAT 57.350 34.783 0.00 0.00 0.00 2.57
2526 2880 1.734655 ACCACCCAGATGAGTTGACT 58.265 50.000 0.00 0.00 0.00 3.41
2531 2885 2.301296 ACCCAGATGAGTTGACTGTCAG 59.699 50.000 10.77 0.00 0.00 3.51
2588 2942 4.878878 CCCCCTACGCTGATTTCC 57.121 61.111 0.00 0.00 0.00 3.13
2683 3037 6.932356 TGATTGATCAGGCAAGATAAACTC 57.068 37.500 0.00 0.00 32.11 3.01
2686 3040 7.066645 TGATTGATCAGGCAAGATAAACTCTTG 59.933 37.037 9.97 9.97 45.42 3.02
2727 3094 7.771183 TGTTTCCTGCAAATACTATGGAAATC 58.229 34.615 13.62 9.27 42.85 2.17
2744 3111 6.446318 TGGAAATCACACAGAAACTATTTGC 58.554 36.000 0.00 0.00 0.00 3.68
2800 3196 6.832520 TTGCAAGCCTTTTAATACATCTCA 57.167 33.333 0.00 0.00 0.00 3.27
2801 3197 7.408756 TTGCAAGCCTTTTAATACATCTCAT 57.591 32.000 0.00 0.00 0.00 2.90
2802 3198 8.518430 TTGCAAGCCTTTTAATACATCTCATA 57.482 30.769 0.00 0.00 0.00 2.15
2803 3199 8.696043 TGCAAGCCTTTTAATACATCTCATAT 57.304 30.769 0.00 0.00 0.00 1.78
2804 3200 9.791801 TGCAAGCCTTTTAATACATCTCATATA 57.208 29.630 0.00 0.00 0.00 0.86
2868 3268 1.613925 TGCCTACATACAGATCTCCGC 59.386 52.381 0.00 0.00 0.00 5.54
2895 3295 7.492352 AGACAAACAATACTTACTTGACCAC 57.508 36.000 0.00 0.00 0.00 4.16
2967 3371 0.331616 ACCATGGTTACCTGAAGGCC 59.668 55.000 13.00 0.00 39.32 5.19
2978 3382 1.618343 CCTGAAGGCCGGAAAATGTTT 59.382 47.619 5.05 0.00 0.00 2.83
2981 3385 2.559231 TGAAGGCCGGAAAATGTTTACC 59.441 45.455 5.05 0.00 0.00 2.85
2989 3393 2.036089 GGAAAATGTTTACCGTTGGCCA 59.964 45.455 0.00 0.00 0.00 5.36
2990 3394 2.804697 AAATGTTTACCGTTGGCCAC 57.195 45.000 3.88 0.00 0.00 5.01
3001 4309 2.159393 CCGTTGGCCACTATGTGAAATG 60.159 50.000 3.88 0.00 35.23 2.32
3003 4311 3.181507 CGTTGGCCACTATGTGAAATGAG 60.182 47.826 3.88 0.00 35.23 2.90
3004 4312 3.003394 TGGCCACTATGTGAAATGAGG 57.997 47.619 0.00 0.00 35.23 3.86
3006 4314 3.202818 TGGCCACTATGTGAAATGAGGAT 59.797 43.478 0.00 0.00 35.23 3.24
3028 4336 7.222872 GGATACTCCATCATCTCATGTTTCTT 58.777 38.462 0.00 0.00 36.28 2.52
3037 4345 9.381033 CATCATCTCATGTTTCTTTACTCTTCT 57.619 33.333 0.00 0.00 0.00 2.85
3127 4435 2.481952 GCTCAAAGACACAGCAGGTTAG 59.518 50.000 0.00 0.00 33.06 2.34
3137 4445 3.003689 CACAGCAGGTTAGTTTCTTGTGG 59.996 47.826 0.00 0.00 0.00 4.17
3139 4447 3.632145 CAGCAGGTTAGTTTCTTGTGGTT 59.368 43.478 0.00 0.00 0.00 3.67
3162 4470 5.178797 TGCTCTCTGAAGGCTTACATAAAC 58.821 41.667 0.00 0.00 0.00 2.01
3171 4486 4.851843 AGGCTTACATAAACCCCTGTTAC 58.148 43.478 0.00 0.00 33.30 2.50
3204 4519 7.104043 TGCATCCTCTTTAAATTCTGGATTG 57.896 36.000 7.99 6.45 32.63 2.67
3205 4520 6.097270 TGCATCCTCTTTAAATTCTGGATTGG 59.903 38.462 7.99 0.00 32.63 3.16
3223 4538 6.832900 TGGATTGGATTATTGTGCAGAATGTA 59.167 34.615 18.72 7.42 39.31 2.29
3284 4599 1.882623 CTCCAACAAAGCAGAGGGAAC 59.117 52.381 0.00 0.00 0.00 3.62
3288 4603 0.035458 ACAAAGCAGAGGGAACGGAG 59.965 55.000 0.00 0.00 0.00 4.63
3304 4619 1.336887 CGGAGGAAGAAGAAAGCACGA 60.337 52.381 0.00 0.00 0.00 4.35
3413 4730 7.441157 AGCTTTTGTTGCCTTTTTCTTAATACC 59.559 33.333 0.00 0.00 0.00 2.73
3488 4811 7.524065 AGAAAAATTCTGCAATTGCTAAATGC 58.476 30.769 29.37 16.98 42.66 3.56
3489 4812 7.173562 AGAAAAATTCTGCAATTGCTAAATGCA 59.826 29.630 29.37 8.86 44.02 3.96
3544 4871 3.443681 CGCCATTTGGTAAAACTGATCCT 59.556 43.478 0.00 0.00 37.57 3.24
3570 4897 6.880942 ATCGATACCTAACAGAAGTAGGAC 57.119 41.667 0.00 0.00 35.10 3.85
3612 4939 5.582665 CACTCTTGAATGTCTAGTAAAGCCC 59.417 44.000 0.00 0.00 0.00 5.19
3637 4965 1.065854 GTGGACTCTGAACTCCCATGG 60.066 57.143 4.14 4.14 0.00 3.66
3651 4979 2.191375 ATGGTCTGGAGCCATGCG 59.809 61.111 0.00 0.00 44.36 4.73
3659 4987 3.149648 GAGCCATGCGCCCCATTT 61.150 61.111 4.18 0.00 38.78 2.32
3660 4988 2.684655 AGCCATGCGCCCCATTTT 60.685 55.556 4.18 0.00 38.78 1.82
3661 4989 1.381056 AGCCATGCGCCCCATTTTA 60.381 52.632 4.18 0.00 38.78 1.52
3662 4990 0.975040 AGCCATGCGCCCCATTTTAA 60.975 50.000 4.18 0.00 38.78 1.52
3663 4991 0.107945 GCCATGCGCCCCATTTTAAA 60.108 50.000 4.18 0.00 29.71 1.52
3664 4992 1.677217 GCCATGCGCCCCATTTTAAAA 60.677 47.619 4.18 2.51 29.71 1.52
3665 4993 2.006169 CCATGCGCCCCATTTTAAAAC 58.994 47.619 4.18 0.00 29.71 2.43
3666 4994 2.354604 CCATGCGCCCCATTTTAAAACT 60.355 45.455 4.18 0.00 29.71 2.66
3667 4995 3.333804 CATGCGCCCCATTTTAAAACTT 58.666 40.909 4.18 0.00 29.71 2.66
3668 4996 4.499183 CATGCGCCCCATTTTAAAACTTA 58.501 39.130 4.18 0.00 29.71 2.24
3669 4997 4.810191 TGCGCCCCATTTTAAAACTTAT 57.190 36.364 4.18 0.00 0.00 1.73
3670 4998 5.153950 TGCGCCCCATTTTAAAACTTATT 57.846 34.783 4.18 0.00 0.00 1.40
3671 4999 5.552178 TGCGCCCCATTTTAAAACTTATTT 58.448 33.333 4.18 0.00 0.00 1.40
3672 5000 5.409826 TGCGCCCCATTTTAAAACTTATTTG 59.590 36.000 4.18 0.00 0.00 2.32
3673 5001 5.410132 GCGCCCCATTTTAAAACTTATTTGT 59.590 36.000 1.97 0.00 0.00 2.83
3674 5002 6.619660 GCGCCCCATTTTAAAACTTATTTGTG 60.620 38.462 1.97 0.00 0.00 3.33
3675 5003 6.647067 CGCCCCATTTTAAAACTTATTTGTGA 59.353 34.615 1.97 0.00 0.00 3.58
3676 5004 7.171678 CGCCCCATTTTAAAACTTATTTGTGAA 59.828 33.333 1.97 0.00 0.00 3.18
3677 5005 8.841300 GCCCCATTTTAAAACTTATTTGTGAAA 58.159 29.630 1.97 0.00 0.00 2.69
3713 5041 1.468520 CACAATGCGAATCGGTTTCCT 59.531 47.619 4.35 0.00 0.00 3.36
3725 5057 1.730064 CGGTTTCCTGAACATACCGTG 59.270 52.381 11.60 0.00 44.90 4.94
3793 5129 2.104170 GGGTGTCCTGTCTAGAAGGAG 58.896 57.143 18.45 5.99 44.54 3.69
3877 5226 5.464030 TTGTGTACTCCCTCTGTAAACTC 57.536 43.478 0.00 0.00 31.35 3.01
3924 5273 5.672421 AGTAGTGTCCTAAAACGCCTTAT 57.328 39.130 0.00 0.00 0.00 1.73
3925 5274 5.416947 AGTAGTGTCCTAAAACGCCTTATG 58.583 41.667 0.00 0.00 0.00 1.90
3941 5290 5.163854 CGCCTTATGAAAGTTTACAGAGGTG 60.164 44.000 14.48 13.83 32.19 4.00
3946 5295 5.881923 TGAAAGTTTACAGAGGTGGTAGT 57.118 39.130 0.00 0.00 0.00 2.73
3998 5349 6.963242 CAGTGTGTGTATATCTCATGTTTTGC 59.037 38.462 0.00 0.00 0.00 3.68
4003 5354 8.183536 GTGTGTATATCTCATGTTTTGCAATCA 58.816 33.333 0.00 3.46 0.00 2.57
4018 5369 3.441222 TGCAATCAGCCAATCAACTACTG 59.559 43.478 0.00 0.00 44.83 2.74
4020 5371 4.264253 CAATCAGCCAATCAACTACTGGA 58.736 43.478 0.00 0.00 31.38 3.86
4021 5372 3.616956 TCAGCCAATCAACTACTGGAG 57.383 47.619 0.00 0.00 31.38 3.86
4022 5373 2.237143 TCAGCCAATCAACTACTGGAGG 59.763 50.000 0.00 0.00 31.38 4.30
4023 5374 2.026822 CAGCCAATCAACTACTGGAGGT 60.027 50.000 0.00 0.00 31.38 3.85
4107 5459 1.767759 CAATGCCGGGATCTTCCTTT 58.232 50.000 9.66 0.00 36.57 3.11
4108 5460 1.678101 CAATGCCGGGATCTTCCTTTC 59.322 52.381 9.66 0.00 36.57 2.62
4109 5461 0.918983 ATGCCGGGATCTTCCTTTCA 59.081 50.000 0.92 0.00 36.57 2.69
4137 5489 3.181516 CCAAAAGAATCGCTTCCTTCTCG 60.182 47.826 0.00 0.00 35.24 4.04
4144 5496 1.404391 TCGCTTCCTTCTCGTGATACC 59.596 52.381 0.00 0.00 0.00 2.73
4170 5522 7.869937 CGAATGTATCTTGTGATTCAGGAGTAT 59.130 37.037 0.00 0.00 35.68 2.12
4200 5552 7.576750 TGTTCTTTTTGCTGATACTACTACG 57.423 36.000 0.00 0.00 0.00 3.51
4215 5567 8.830201 ATACTACTACGTATCAACTTCGATCT 57.170 34.615 0.00 0.00 0.00 2.75
4216 5568 6.946165 ACTACTACGTATCAACTTCGATCTG 58.054 40.000 0.00 0.00 0.00 2.90
4219 5571 2.758979 ACGTATCAACTTCGATCTGGGT 59.241 45.455 0.00 0.00 0.00 4.51
4221 5573 3.551890 CGTATCAACTTCGATCTGGGTTG 59.448 47.826 12.29 12.29 39.95 3.77
4223 5575 1.697432 TCAACTTCGATCTGGGTTGGT 59.303 47.619 15.99 0.00 39.33 3.67
4224 5576 1.806542 CAACTTCGATCTGGGTTGGTG 59.193 52.381 11.25 0.00 36.43 4.17
4225 5577 0.324943 ACTTCGATCTGGGTTGGTGG 59.675 55.000 0.00 0.00 0.00 4.61
4248 5601 3.768406 TCACAAAGTCACAATGCAACAC 58.232 40.909 0.00 0.00 0.00 3.32
4264 5617 3.738282 GCAACACACAGTGAACAAACAAA 59.262 39.130 7.81 0.00 36.96 2.83
4267 5620 6.453659 GCAACACACAGTGAACAAACAAATAC 60.454 38.462 7.81 0.00 36.96 1.89
4268 5621 6.260870 ACACACAGTGAACAAACAAATACA 57.739 33.333 7.81 0.00 36.96 2.29
4280 5806 0.035439 CAAATACAGGGTGGCCGTCT 60.035 55.000 0.00 0.00 0.00 4.18
4283 5809 2.815684 ATACAGGGTGGCCGTCTGGA 62.816 60.000 19.44 13.90 37.49 3.86
4316 5842 0.321671 CCTTGGTCACGTCCATCACT 59.678 55.000 0.00 0.00 37.33 3.41
4319 5845 1.218316 GGTCACGTCCATCACTCCC 59.782 63.158 0.00 0.00 0.00 4.30
4329 5855 1.912043 CCATCACTCCCAAGAACCTCT 59.088 52.381 0.00 0.00 0.00 3.69
4330 5856 2.355513 CCATCACTCCCAAGAACCTCTG 60.356 54.545 0.00 0.00 0.00 3.35
4333 5859 0.474660 ACTCCCAAGAACCTCTGGCT 60.475 55.000 0.00 0.00 0.00 4.75
4364 5896 3.222855 CTCGCCCTCCGCATCTCT 61.223 66.667 0.00 0.00 37.30 3.10
4367 5899 2.790791 CGCCCTCCGCATCTCTTCT 61.791 63.158 0.00 0.00 37.30 2.85
4376 5908 1.134753 CGCATCTCTTCTCTCTGCACT 59.865 52.381 0.00 0.00 33.13 4.40
4378 5910 2.795681 GCATCTCTTCTCTCTGCACTCG 60.796 54.545 0.00 0.00 33.13 4.18
4415 5947 3.003173 CCCTCCAAGGCGACCTCA 61.003 66.667 0.00 0.00 32.73 3.86
4427 5959 1.891616 GACCTCACCTTCCTCCGAC 59.108 63.158 0.00 0.00 0.00 4.79
4428 5960 1.935327 GACCTCACCTTCCTCCGACG 61.935 65.000 0.00 0.00 0.00 5.12
4429 5961 2.711922 CCTCACCTTCCTCCGACGG 61.712 68.421 7.84 7.84 33.57 4.79
4430 5962 3.358076 CTCACCTTCCTCCGACGGC 62.358 68.421 9.66 0.00 30.35 5.68
4500 6032 3.989698 CTGGCTCGGCGTGTAGGTG 62.990 68.421 6.85 0.00 0.00 4.00
4677 6209 0.373716 CCAGGAAATAGTTGACGCGC 59.626 55.000 5.73 0.00 0.00 6.86
4689 6221 0.249531 TGACGCGCAAGAACCAGTTA 60.250 50.000 5.73 0.00 43.02 2.24
4700 6232 1.885163 AACCAGTTACCGCCCGAGAG 61.885 60.000 0.00 0.00 0.00 3.20
4723 6255 4.554363 CGTAGTCCAGCTCCGGCG 62.554 72.222 0.00 0.00 44.37 6.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 3.935203 CACAAGTATGGTGTCCATGTCTC 59.065 47.826 11.04 0.90 44.84 3.36
11 12 4.943093 TCAATCACAAGTATGGTGTCCATG 59.057 41.667 11.04 0.00 44.84 3.66
22 23 9.295825 ACCATAGATGTTTTTCAATCACAAGTA 57.704 29.630 0.00 0.00 0.00 2.24
24 25 8.918658 CAACCATAGATGTTTTTCAATCACAAG 58.081 33.333 0.00 0.00 0.00 3.16
31 32 6.873076 GCAATCCAACCATAGATGTTTTTCAA 59.127 34.615 0.00 0.00 0.00 2.69
71 76 1.694150 CCGGCCTGGAGATCTTTGATA 59.306 52.381 7.77 0.00 42.00 2.15
72 77 0.471617 CCGGCCTGGAGATCTTTGAT 59.528 55.000 7.77 0.00 42.00 2.57
75 80 1.208165 AACCCGGCCTGGAGATCTTT 61.208 55.000 21.63 0.00 42.00 2.52
115 120 1.459209 CAATAAACAGCTGCGACGTGA 59.541 47.619 15.27 0.00 0.00 4.35
154 159 8.995906 CGCTTTTATATTTGTTTACGGAAGAAG 58.004 33.333 0.00 0.00 0.00 2.85
155 160 8.505625 ACGCTTTTATATTTGTTTACGGAAGAA 58.494 29.630 0.00 0.00 0.00 2.52
156 161 8.031848 ACGCTTTTATATTTGTTTACGGAAGA 57.968 30.769 0.00 0.00 0.00 2.87
157 162 8.663771 AACGCTTTTATATTTGTTTACGGAAG 57.336 30.769 0.00 0.00 0.00 3.46
159 164 9.757859 CTAAACGCTTTTATATTTGTTTACGGA 57.242 29.630 0.00 0.00 32.41 4.69
178 183 9.404348 GGTACCTCTTAATACTATTCTAAACGC 57.596 37.037 4.06 0.00 0.00 4.84
179 184 9.604626 CGGTACCTCTTAATACTATTCTAAACG 57.395 37.037 10.90 0.00 0.00 3.60
183 188 9.499479 CACTCGGTACCTCTTAATACTATTCTA 57.501 37.037 10.90 0.00 0.00 2.10
184 189 7.997803 ACACTCGGTACCTCTTAATACTATTCT 59.002 37.037 10.90 0.00 0.00 2.40
185 190 8.074972 CACACTCGGTACCTCTTAATACTATTC 58.925 40.741 10.90 0.00 0.00 1.75
186 191 7.469732 GCACACTCGGTACCTCTTAATACTATT 60.470 40.741 10.90 0.00 0.00 1.73
187 192 6.016443 GCACACTCGGTACCTCTTAATACTAT 60.016 42.308 10.90 0.00 0.00 2.12
188 193 5.297776 GCACACTCGGTACCTCTTAATACTA 59.702 44.000 10.90 0.00 0.00 1.82
189 194 4.097589 GCACACTCGGTACCTCTTAATACT 59.902 45.833 10.90 0.00 0.00 2.12
190 195 4.097589 AGCACACTCGGTACCTCTTAATAC 59.902 45.833 10.90 0.00 0.00 1.89
191 196 4.275810 AGCACACTCGGTACCTCTTAATA 58.724 43.478 10.90 0.00 0.00 0.98
192 197 3.097614 AGCACACTCGGTACCTCTTAAT 58.902 45.455 10.90 0.00 0.00 1.40
193 198 2.522185 AGCACACTCGGTACCTCTTAA 58.478 47.619 10.90 0.00 0.00 1.85
194 199 2.211250 AGCACACTCGGTACCTCTTA 57.789 50.000 10.90 0.00 0.00 2.10
195 200 1.272769 GAAGCACACTCGGTACCTCTT 59.727 52.381 10.90 1.86 0.00 2.85
196 201 0.889306 GAAGCACACTCGGTACCTCT 59.111 55.000 10.90 0.00 0.00 3.69
197 202 0.889306 AGAAGCACACTCGGTACCTC 59.111 55.000 10.90 0.00 0.00 3.85
198 203 0.889306 GAGAAGCACACTCGGTACCT 59.111 55.000 10.90 0.00 0.00 3.08
199 204 0.889306 AGAGAAGCACACTCGGTACC 59.111 55.000 0.16 0.16 39.12 3.34
200 205 4.373348 AATAGAGAAGCACACTCGGTAC 57.627 45.455 0.00 0.00 39.12 3.34
201 206 5.163581 GGTTAATAGAGAAGCACACTCGGTA 60.164 44.000 0.00 0.00 39.12 4.02
202 207 4.381718 GGTTAATAGAGAAGCACACTCGGT 60.382 45.833 0.00 0.00 39.12 4.69
203 208 4.113354 GGTTAATAGAGAAGCACACTCGG 58.887 47.826 0.00 0.00 39.12 4.63
204 209 4.744570 TGGTTAATAGAGAAGCACACTCG 58.255 43.478 0.00 0.00 39.12 4.18
210 215 4.502105 TGGCATGGTTAATAGAGAAGCA 57.498 40.909 0.00 0.00 38.55 3.91
240 245 7.278211 TCACGAAATAGTTCTTTCAAGATCG 57.722 36.000 0.96 6.49 36.60 3.69
241 246 9.878599 TTTTCACGAAATAGTTCTTTCAAGATC 57.121 29.630 0.96 0.00 35.32 2.75
272 308 1.374758 CTGCCTCGTGTGGGTCTTC 60.375 63.158 0.00 0.00 0.00 2.87
274 310 4.008933 GCTGCCTCGTGTGGGTCT 62.009 66.667 0.00 0.00 0.00 3.85
278 314 2.591429 TTGTGCTGCCTCGTGTGG 60.591 61.111 0.00 0.00 0.00 4.17
284 320 3.273434 TGATTATGAGTTGTGCTGCCTC 58.727 45.455 0.00 0.00 0.00 4.70
294 330 9.277783 GCTGGATTATGTTACTGATTATGAGTT 57.722 33.333 0.00 0.00 0.00 3.01
306 372 9.132521 GCATTTTATGATGCTGGATTATGTTAC 57.867 33.333 2.79 0.00 46.85 2.50
321 387 6.432936 CGATGTTGTAGCAGCATTTTATGAT 58.567 36.000 0.00 0.00 35.55 2.45
322 388 5.220835 CCGATGTTGTAGCAGCATTTTATGA 60.221 40.000 0.00 0.00 35.55 2.15
323 389 4.971830 CCGATGTTGTAGCAGCATTTTATG 59.028 41.667 0.00 0.00 35.55 1.90
324 390 4.640201 ACCGATGTTGTAGCAGCATTTTAT 59.360 37.500 0.00 0.00 35.55 1.40
325 391 4.006989 ACCGATGTTGTAGCAGCATTTTA 58.993 39.130 0.00 0.00 35.55 1.52
326 392 2.819608 ACCGATGTTGTAGCAGCATTTT 59.180 40.909 0.00 0.00 35.55 1.82
328 394 2.113860 ACCGATGTTGTAGCAGCATT 57.886 45.000 0.00 0.00 35.55 3.56
329 395 2.430694 TCTACCGATGTTGTAGCAGCAT 59.569 45.455 0.00 0.00 37.97 3.79
330 396 1.822371 TCTACCGATGTTGTAGCAGCA 59.178 47.619 0.00 0.00 36.47 4.41
331 397 2.194271 GTCTACCGATGTTGTAGCAGC 58.806 52.381 0.00 0.00 36.47 5.25
332 398 2.481449 GGGTCTACCGATGTTGTAGCAG 60.481 54.545 0.00 0.00 36.47 4.24
333 399 1.479323 GGGTCTACCGATGTTGTAGCA 59.521 52.381 0.00 0.00 36.47 3.49
334 400 1.202498 GGGGTCTACCGATGTTGTAGC 60.202 57.143 0.00 0.00 41.60 3.58
335 401 2.104967 TGGGGTCTACCGATGTTGTAG 58.895 52.381 0.00 0.00 41.60 2.74
336 402 2.234896 TGGGGTCTACCGATGTTGTA 57.765 50.000 0.00 0.00 41.60 2.41
337 403 1.580059 ATGGGGTCTACCGATGTTGT 58.420 50.000 0.00 0.00 41.60 3.32
338 404 2.093181 TGAATGGGGTCTACCGATGTTG 60.093 50.000 0.00 0.00 37.78 3.33
339 405 2.170607 CTGAATGGGGTCTACCGATGTT 59.829 50.000 0.00 0.00 37.78 2.71
340 406 1.762957 CTGAATGGGGTCTACCGATGT 59.237 52.381 0.00 0.00 37.78 3.06
341 407 1.541233 GCTGAATGGGGTCTACCGATG 60.541 57.143 0.00 0.00 37.78 3.84
342 408 0.759346 GCTGAATGGGGTCTACCGAT 59.241 55.000 0.00 0.00 39.67 4.18
343 409 0.616395 TGCTGAATGGGGTCTACCGA 60.616 55.000 0.00 0.00 41.60 4.69
344 410 0.251916 TTGCTGAATGGGGTCTACCG 59.748 55.000 0.00 0.00 41.60 4.02
345 411 1.408822 CCTTGCTGAATGGGGTCTACC 60.409 57.143 0.00 0.00 39.11 3.18
346 412 2.019156 GCCTTGCTGAATGGGGTCTAC 61.019 57.143 0.00 0.00 0.00 2.59
347 413 0.255890 GCCTTGCTGAATGGGGTCTA 59.744 55.000 0.00 0.00 0.00 2.59
348 414 1.000396 GCCTTGCTGAATGGGGTCT 60.000 57.895 0.00 0.00 0.00 3.85
349 415 2.054453 GGCCTTGCTGAATGGGGTC 61.054 63.158 0.00 0.00 0.00 4.46
350 416 2.037847 GGCCTTGCTGAATGGGGT 59.962 61.111 0.00 0.00 0.00 4.95
351 417 2.037687 TGGCCTTGCTGAATGGGG 59.962 61.111 3.32 0.00 0.00 4.96
352 418 2.703798 CGTGGCCTTGCTGAATGGG 61.704 63.158 3.32 0.00 0.00 4.00
353 419 1.651240 CTCGTGGCCTTGCTGAATGG 61.651 60.000 3.32 0.00 0.00 3.16
354 420 0.674581 TCTCGTGGCCTTGCTGAATG 60.675 55.000 3.32 0.00 0.00 2.67
355 421 0.392193 CTCTCGTGGCCTTGCTGAAT 60.392 55.000 3.32 0.00 0.00 2.57
356 422 1.004560 CTCTCGTGGCCTTGCTGAA 60.005 57.895 3.32 0.00 0.00 3.02
357 423 2.659016 CTCTCGTGGCCTTGCTGA 59.341 61.111 3.32 0.00 0.00 4.26
358 424 2.249413 ATCCTCTCGTGGCCTTGCTG 62.249 60.000 3.32 0.00 0.00 4.41
359 425 1.965754 GATCCTCTCGTGGCCTTGCT 61.966 60.000 3.32 0.00 0.00 3.91
360 426 1.522580 GATCCTCTCGTGGCCTTGC 60.523 63.158 3.32 0.00 0.00 4.01
361 427 1.144936 GGATCCTCTCGTGGCCTTG 59.855 63.158 3.84 0.00 0.00 3.61
362 428 2.427245 CGGATCCTCTCGTGGCCTT 61.427 63.158 10.75 0.00 0.00 4.35
363 429 2.835431 CGGATCCTCTCGTGGCCT 60.835 66.667 10.75 0.00 0.00 5.19
364 430 3.917760 CCGGATCCTCTCGTGGCC 61.918 72.222 10.75 0.00 0.00 5.36
365 431 3.917760 CCCGGATCCTCTCGTGGC 61.918 72.222 10.75 0.00 0.00 5.01
366 432 3.917760 GCCCGGATCCTCTCGTGG 61.918 72.222 10.75 1.87 0.00 4.94
367 433 3.917760 GGCCCGGATCCTCTCGTG 61.918 72.222 10.75 0.00 0.00 4.35
368 434 4.458829 TGGCCCGGATCCTCTCGT 62.459 66.667 10.75 0.00 0.00 4.18
369 435 3.610669 CTGGCCCGGATCCTCTCG 61.611 72.222 10.75 0.00 0.00 4.04
370 436 1.535202 ATCTGGCCCGGATCCTCTC 60.535 63.158 10.75 0.00 0.00 3.20
371 437 1.535202 GATCTGGCCCGGATCCTCT 60.535 63.158 20.20 0.00 39.58 3.69
372 438 1.410850 TTGATCTGGCCCGGATCCTC 61.411 60.000 26.23 7.36 43.45 3.71
373 439 1.384502 TTGATCTGGCCCGGATCCT 60.385 57.895 26.23 0.00 43.45 3.24
374 440 1.072159 CTTGATCTGGCCCGGATCC 59.928 63.158 26.23 11.50 43.45 3.36
375 441 1.001406 CTACTTGATCTGGCCCGGATC 59.999 57.143 23.36 23.36 44.12 3.36
376 442 1.051812 CTACTTGATCTGGCCCGGAT 58.948 55.000 4.25 4.25 31.40 4.18
377 443 1.048724 CCTACTTGATCTGGCCCGGA 61.049 60.000 0.73 0.00 0.00 5.14
378 444 1.447643 CCTACTTGATCTGGCCCGG 59.552 63.158 0.00 0.00 0.00 5.73
379 445 1.227674 GCCTACTTGATCTGGCCCG 60.228 63.158 0.00 0.00 39.49 6.13
380 446 4.887615 GCCTACTTGATCTGGCCC 57.112 61.111 0.00 0.00 39.49 5.80
382 448 0.253044 TGTGGCCTACTTGATCTGGC 59.747 55.000 3.32 0.00 44.22 4.85
383 449 1.745141 GCTGTGGCCTACTTGATCTGG 60.745 57.143 3.32 0.00 0.00 3.86
384 450 1.065926 TGCTGTGGCCTACTTGATCTG 60.066 52.381 3.32 0.00 37.74 2.90
385 451 1.279496 TGCTGTGGCCTACTTGATCT 58.721 50.000 3.32 0.00 37.74 2.75
390 456 3.931907 TTCATATGCTGTGGCCTACTT 57.068 42.857 3.32 0.00 37.74 2.24
399 465 1.667724 GCGCTCTGTTTCATATGCTGT 59.332 47.619 0.00 0.00 0.00 4.40
406 472 2.358615 TGCCGCGCTCTGTTTCAT 60.359 55.556 5.56 0.00 0.00 2.57
764 835 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
765 836 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
766 837 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
767 838 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
768 839 3.244044 GCCTCTCTCTCTCTCTCTCTCTC 60.244 56.522 0.00 0.00 0.00 3.20
769 840 2.703007 GCCTCTCTCTCTCTCTCTCTCT 59.297 54.545 0.00 0.00 0.00 3.10
770 841 2.546795 CGCCTCTCTCTCTCTCTCTCTC 60.547 59.091 0.00 0.00 0.00 3.20
771 842 1.414181 CGCCTCTCTCTCTCTCTCTCT 59.586 57.143 0.00 0.00 0.00 3.10
772 843 1.541233 CCGCCTCTCTCTCTCTCTCTC 60.541 61.905 0.00 0.00 0.00 3.20
773 844 0.469917 CCGCCTCTCTCTCTCTCTCT 59.530 60.000 0.00 0.00 0.00 3.10
774 845 0.180406 ACCGCCTCTCTCTCTCTCTC 59.820 60.000 0.00 0.00 0.00 3.20
775 846 0.180406 GACCGCCTCTCTCTCTCTCT 59.820 60.000 0.00 0.00 0.00 3.10
776 847 0.180406 AGACCGCCTCTCTCTCTCTC 59.820 60.000 0.00 0.00 0.00 3.20
777 848 0.107214 CAGACCGCCTCTCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
778 849 0.107410 TCAGACCGCCTCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
779 850 0.107214 CTCAGACCGCCTCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
780 851 0.107410 TCTCAGACCGCCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
781 852 0.107214 CTCTCAGACCGCCTCTCTCT 60.107 60.000 0.00 0.00 0.00 3.10
782 853 1.101049 CCTCTCAGACCGCCTCTCTC 61.101 65.000 0.00 0.00 0.00 3.20
783 854 1.077068 CCTCTCAGACCGCCTCTCT 60.077 63.158 0.00 0.00 0.00 3.10
784 855 2.781158 GCCTCTCAGACCGCCTCTC 61.781 68.421 0.00 0.00 0.00 3.20
785 856 1.927569 TAGCCTCTCAGACCGCCTCT 61.928 60.000 0.00 0.00 0.00 3.69
786 857 1.452145 CTAGCCTCTCAGACCGCCTC 61.452 65.000 0.00 0.00 0.00 4.70
787 858 1.454847 CTAGCCTCTCAGACCGCCT 60.455 63.158 0.00 0.00 0.00 5.52
788 859 0.825840 ATCTAGCCTCTCAGACCGCC 60.826 60.000 0.00 0.00 0.00 6.13
789 860 1.810151 CTATCTAGCCTCTCAGACCGC 59.190 57.143 0.00 0.00 0.00 5.68
790 861 3.007506 TCTCTATCTAGCCTCTCAGACCG 59.992 52.174 0.00 0.00 0.00 4.79
791 862 4.286032 TCTCTCTATCTAGCCTCTCAGACC 59.714 50.000 0.00 0.00 0.00 3.85
792 863 5.012148 ACTCTCTCTATCTAGCCTCTCAGAC 59.988 48.000 0.00 0.00 0.00 3.51
793 864 5.012046 CACTCTCTCTATCTAGCCTCTCAGA 59.988 48.000 0.00 0.00 0.00 3.27
794 865 5.240891 CACTCTCTCTATCTAGCCTCTCAG 58.759 50.000 0.00 0.00 0.00 3.35
795 866 4.041567 CCACTCTCTCTATCTAGCCTCTCA 59.958 50.000 0.00 0.00 0.00 3.27
796 867 4.286032 TCCACTCTCTCTATCTAGCCTCTC 59.714 50.000 0.00 0.00 0.00 3.20
797 868 4.239495 TCCACTCTCTCTATCTAGCCTCT 58.761 47.826 0.00 0.00 0.00 3.69
798 869 4.286032 TCTCCACTCTCTCTATCTAGCCTC 59.714 50.000 0.00 0.00 0.00 4.70
799 870 4.239495 TCTCCACTCTCTCTATCTAGCCT 58.761 47.826 0.00 0.00 0.00 4.58
800 871 4.634012 TCTCCACTCTCTCTATCTAGCC 57.366 50.000 0.00 0.00 0.00 3.93
801 872 5.003804 CCTTCTCCACTCTCTCTATCTAGC 58.996 50.000 0.00 0.00 0.00 3.42
802 873 5.073144 ACCCTTCTCCACTCTCTCTATCTAG 59.927 48.000 0.00 0.00 0.00 2.43
803 874 4.979039 ACCCTTCTCCACTCTCTCTATCTA 59.021 45.833 0.00 0.00 0.00 1.98
804 875 3.791545 ACCCTTCTCCACTCTCTCTATCT 59.208 47.826 0.00 0.00 0.00 1.98
805 876 3.888930 CACCCTTCTCCACTCTCTCTATC 59.111 52.174 0.00 0.00 0.00 2.08
806 877 3.270960 ACACCCTTCTCCACTCTCTCTAT 59.729 47.826 0.00 0.00 0.00 1.98
807 878 2.650322 ACACCCTTCTCCACTCTCTCTA 59.350 50.000 0.00 0.00 0.00 2.43
825 896 2.156051 GAGGGAGGTCACCGTCACAC 62.156 65.000 0.00 0.00 42.28 3.82
851 958 2.270959 GGCTTCTTGGCAAAGGGAG 58.729 57.895 0.00 1.04 41.37 4.30
880 987 3.568007 TGGTTTGCTCTTGGTTGTGTATC 59.432 43.478 0.00 0.00 0.00 2.24
882 989 3.006112 TGGTTTGCTCTTGGTTGTGTA 57.994 42.857 0.00 0.00 0.00 2.90
885 992 1.480545 GGTTGGTTTGCTCTTGGTTGT 59.519 47.619 0.00 0.00 0.00 3.32
888 995 1.111277 GTGGTTGGTTTGCTCTTGGT 58.889 50.000 0.00 0.00 0.00 3.67
889 996 1.338020 GAGTGGTTGGTTTGCTCTTGG 59.662 52.381 0.00 0.00 0.00 3.61
890 997 2.023673 TGAGTGGTTGGTTTGCTCTTG 58.976 47.619 0.00 0.00 0.00 3.02
891 998 2.024414 GTGAGTGGTTGGTTTGCTCTT 58.976 47.619 0.00 0.00 0.00 2.85
892 999 1.212935 AGTGAGTGGTTGGTTTGCTCT 59.787 47.619 0.00 0.00 0.00 4.09
895 1002 1.065551 GTGAGTGAGTGGTTGGTTTGC 59.934 52.381 0.00 0.00 0.00 3.68
896 1003 2.643551 AGTGAGTGAGTGGTTGGTTTG 58.356 47.619 0.00 0.00 0.00 2.93
906 1025 1.892474 GGAGCTGAGAAGTGAGTGAGT 59.108 52.381 0.00 0.00 0.00 3.41
922 1047 2.194326 GCAGAGGAATGGGGGAGC 59.806 66.667 0.00 0.00 0.00 4.70
923 1048 0.693767 AGAGCAGAGGAATGGGGGAG 60.694 60.000 0.00 0.00 0.00 4.30
930 1055 2.958355 GAGTCTAGCAGAGCAGAGGAAT 59.042 50.000 0.00 0.00 0.00 3.01
942 1067 2.107705 GCGGTAGCAGAGTCTAGCA 58.892 57.895 14.37 1.85 44.35 3.49
958 1083 1.801178 GAAGGAGAACCAACTGAAGCG 59.199 52.381 0.00 0.00 38.94 4.68
967 1116 3.146066 CGACAAAATGGAAGGAGAACCA 58.854 45.455 0.00 0.00 40.57 3.67
970 1119 4.351874 ACTCGACAAAATGGAAGGAGAA 57.648 40.909 0.00 0.00 0.00 2.87
972 1121 4.093556 GCTAACTCGACAAAATGGAAGGAG 59.906 45.833 0.00 0.00 0.00 3.69
973 1122 4.000988 GCTAACTCGACAAAATGGAAGGA 58.999 43.478 0.00 0.00 0.00 3.36
980 1129 1.084289 GCCGGCTAACTCGACAAAAT 58.916 50.000 22.15 0.00 0.00 1.82
982 1131 0.036765 ATGCCGGCTAACTCGACAAA 60.037 50.000 29.70 1.81 0.00 2.83
984 1133 1.153647 CATGCCGGCTAACTCGACA 60.154 57.895 29.70 3.35 0.00 4.35
1120 1273 1.217916 AGACGGAGAGAGAGATGGGA 58.782 55.000 0.00 0.00 0.00 4.37
1124 1277 1.961793 CGGAAGACGGAGAGAGAGAT 58.038 55.000 0.00 0.00 39.42 2.75
1135 1293 2.093152 CGAAATTTGTACCCGGAAGACG 59.907 50.000 0.73 0.00 43.80 4.18
1142 1300 0.730840 GAGCCCGAAATTTGTACCCG 59.269 55.000 0.00 0.00 0.00 5.28
1185 1344 0.750911 GGAAATCCTGAGCCCAGCAG 60.751 60.000 0.00 0.00 39.07 4.24
1186 1345 1.304282 GGAAATCCTGAGCCCAGCA 59.696 57.895 0.00 0.00 39.07 4.41
1187 1346 1.454663 GGGAAATCCTGAGCCCAGC 60.455 63.158 0.00 0.00 40.39 4.85
1188 1347 1.228510 GGGGAAATCCTGAGCCCAG 59.771 63.158 0.00 0.00 42.52 4.45
1189 1348 2.316586 GGGGGAAATCCTGAGCCCA 61.317 63.158 0.00 0.00 42.52 5.36
1190 1349 1.659035 ATGGGGGAAATCCTGAGCCC 61.659 60.000 4.93 4.93 39.93 5.19
1202 1361 1.310715 CCAGGATGCAAATGGGGGA 59.689 57.895 7.20 0.00 31.97 4.81
1232 1391 4.796495 ACGGGCAAGGGCGAATCC 62.796 66.667 0.00 0.00 42.47 3.01
1240 1399 1.524008 GGGTTCAAGAACGGGCAAGG 61.524 60.000 6.84 0.00 42.02 3.61
1245 1404 1.670083 GGTCGGGTTCAAGAACGGG 60.670 63.158 6.84 1.99 42.02 5.28
1268 1427 0.178958 AAGAGACACTGGACGAGGGT 60.179 55.000 0.00 0.00 43.02 4.34
1270 1429 0.389166 GCAAGAGACACTGGACGAGG 60.389 60.000 0.00 0.00 0.00 4.63
1273 1432 0.888619 TAGGCAAGAGACACTGGACG 59.111 55.000 0.00 0.00 31.50 4.79
1276 1435 2.037772 ACAACTAGGCAAGAGACACTGG 59.962 50.000 0.00 0.00 0.00 4.00
1277 1436 3.393089 ACAACTAGGCAAGAGACACTG 57.607 47.619 0.00 0.00 0.00 3.66
1278 1437 4.130118 CAAACAACTAGGCAAGAGACACT 58.870 43.478 0.00 0.00 0.00 3.55
1321 1480 4.253685 TCTCGGAGGTGAAATTTTAGCAG 58.746 43.478 13.76 3.54 0.00 4.24
1336 1495 7.982354 AGAGGTTCAAAATATTTACTCTCGGAG 59.018 37.037 0.01 0.00 35.52 4.63
1359 1528 0.236711 CCAGCACGAGCAAAACAGAG 59.763 55.000 7.77 0.00 45.49 3.35
1371 1551 2.490115 TGTAATAAAAAGGCCCAGCACG 59.510 45.455 0.00 0.00 0.00 5.34
1387 1567 2.172717 GGTGGGCACATAGTCCTGTAAT 59.827 50.000 0.00 0.00 44.59 1.89
1402 1582 2.589442 TTGTCGAACACGGTGGGC 60.589 61.111 13.48 2.83 0.00 5.36
1420 1600 3.036084 ACCACGTTCGCGCTGAAG 61.036 61.111 13.54 10.64 46.04 3.02
1429 1609 2.663852 CCGTCCACCACCACGTTC 60.664 66.667 0.00 0.00 34.06 3.95
1575 1786 1.251251 AATCCTGTGGCAGCTTTCAC 58.749 50.000 8.76 8.76 34.71 3.18
1578 1789 4.322953 CCAATAAAATCCTGTGGCAGCTTT 60.323 41.667 0.00 0.00 0.00 3.51
1620 1835 1.542915 CTGCCCTGTGGACAAATTGAG 59.457 52.381 0.00 0.00 0.00 3.02
1630 1845 0.181350 GTAATCCTCCTGCCCTGTGG 59.819 60.000 0.00 0.00 0.00 4.17
1773 1988 8.452534 CGATCCAAGATGGTATAGAACTACTAC 58.547 40.741 0.00 0.00 39.03 2.73
1801 2016 6.851222 ACTGAATGAATAGCTAAACCATCG 57.149 37.500 0.00 0.00 0.00 3.84
1802 2017 7.067494 ACCAACTGAATGAATAGCTAAACCATC 59.933 37.037 0.00 0.00 0.00 3.51
1803 2018 6.891908 ACCAACTGAATGAATAGCTAAACCAT 59.108 34.615 0.00 0.00 0.00 3.55
1829 2044 2.172851 ACAAGCACGGGATAAAACGA 57.827 45.000 0.00 0.00 0.00 3.85
1830 2045 2.981400 AACAAGCACGGGATAAAACG 57.019 45.000 0.00 0.00 0.00 3.60
1839 2054 6.205784 TGAAAGAGAAAATAAACAAGCACGG 58.794 36.000 0.00 0.00 0.00 4.94
1840 2055 6.912591 ACTGAAAGAGAAAATAAACAAGCACG 59.087 34.615 0.00 0.00 37.43 5.34
1857 2072 0.895530 CTCCGGTAGCCACTGAAAGA 59.104 55.000 0.00 0.00 37.43 2.52
1910 2125 5.710099 ACTCACCATATTTTGTACCAACCAG 59.290 40.000 0.00 0.00 0.00 4.00
1945 2160 3.243535 GGAAAAAGTGCTTCCCTTGACAG 60.244 47.826 0.00 0.00 37.03 3.51
1946 2161 2.693074 GGAAAAAGTGCTTCCCTTGACA 59.307 45.455 0.00 0.00 37.03 3.58
1947 2162 2.693074 TGGAAAAAGTGCTTCCCTTGAC 59.307 45.455 0.00 0.00 41.54 3.18
1993 2209 1.849829 GCAGCAACGTACAAACCAAAC 59.150 47.619 0.00 0.00 0.00 2.93
2016 2235 3.116096 AGATCCTAGCCACTACCAACA 57.884 47.619 0.00 0.00 0.00 3.33
2111 2334 8.723311 GGTAGCATTTAAACATATACCGCAATA 58.277 33.333 0.00 0.00 0.00 1.90
2116 2342 9.445786 CTTTTGGTAGCATTTAAACATATACCG 57.554 33.333 0.00 0.00 35.11 4.02
2159 2467 4.337274 TCATTTGCTCCAATCATGCACTAG 59.663 41.667 0.00 0.00 36.37 2.57
2169 2477 8.523915 TGAGTAACATATTCATTTGCTCCAAT 57.476 30.769 0.00 0.00 32.70 3.16
2203 2513 1.474077 GCCACTAATTGCTGAACCTGG 59.526 52.381 0.00 0.00 0.00 4.45
2208 2518 1.354031 TCTGGGCCACTAATTGCTGAA 59.646 47.619 0.00 0.00 0.00 3.02
2217 2527 4.298626 AGAAACTATCATCTGGGCCACTA 58.701 43.478 0.00 0.00 0.00 2.74
2229 2539 9.605275 CAAGAAGTGATCCATAAGAAACTATCA 57.395 33.333 0.00 0.00 0.00 2.15
2232 2542 7.624549 AGCAAGAAGTGATCCATAAGAAACTA 58.375 34.615 0.00 0.00 0.00 2.24
2234 2544 6.749923 AGCAAGAAGTGATCCATAAGAAAC 57.250 37.500 0.00 0.00 0.00 2.78
2288 2599 0.667184 CCAACCCATTCGCAAAGTGC 60.667 55.000 0.00 0.00 40.69 4.40
2357 2711 6.039616 GTCCTAGAAGCTATCACTTCAACAG 58.960 44.000 7.01 1.66 46.97 3.16
2360 2714 5.717178 ACAGTCCTAGAAGCTATCACTTCAA 59.283 40.000 7.01 0.00 46.97 2.69
2381 2735 6.236017 TGTTTTCCTTGCTTCGTATTACAG 57.764 37.500 0.00 0.00 0.00 2.74
2383 2737 7.481798 CAGATTGTTTTCCTTGCTTCGTATTAC 59.518 37.037 0.00 0.00 0.00 1.89
2384 2738 7.361713 CCAGATTGTTTTCCTTGCTTCGTATTA 60.362 37.037 0.00 0.00 0.00 0.98
2385 2739 6.381801 CAGATTGTTTTCCTTGCTTCGTATT 58.618 36.000 0.00 0.00 0.00 1.89
2386 2740 5.106157 CCAGATTGTTTTCCTTGCTTCGTAT 60.106 40.000 0.00 0.00 0.00 3.06
2387 2741 4.215399 CCAGATTGTTTTCCTTGCTTCGTA 59.785 41.667 0.00 0.00 0.00 3.43
2420 2774 2.758979 CTCAGCAGGAGCAAAAATGGAT 59.241 45.455 0.00 0.00 45.49 3.41
2438 2792 6.808212 GGCATTCGAAGATTTTCAAAATCTCA 59.192 34.615 22.92 9.68 36.07 3.27
2456 2810 1.854126 GAATTCAAATGGCGGCATTCG 59.146 47.619 33.85 25.35 42.76 3.34
2489 2843 5.408604 GGGTGGTATATTATGAAGTTGCTCG 59.591 44.000 0.00 0.00 0.00 5.03
2501 2855 6.844388 AGTCAACTCATCTGGGTGGTATATTA 59.156 38.462 0.00 0.00 0.00 0.98
2509 2863 2.037641 TGACAGTCAACTCATCTGGGTG 59.962 50.000 0.00 0.00 34.02 4.61
2526 2880 1.112916 TGAGACTTGACGCCCTGACA 61.113 55.000 0.00 0.00 0.00 3.58
2531 2885 0.951040 CCACTTGAGACTTGACGCCC 60.951 60.000 0.00 0.00 0.00 6.13
2575 2929 7.413438 GCATATATGGAAAGGAAATCAGCGTAG 60.413 40.741 14.51 0.00 0.00 3.51
2584 2938 4.141367 TGACGGGCATATATGGAAAGGAAA 60.141 41.667 14.51 0.00 0.00 3.13
2585 2939 3.392947 TGACGGGCATATATGGAAAGGAA 59.607 43.478 14.51 0.00 0.00 3.36
2586 2940 2.976185 TGACGGGCATATATGGAAAGGA 59.024 45.455 14.51 0.00 0.00 3.36
2587 2941 3.417069 TGACGGGCATATATGGAAAGG 57.583 47.619 14.51 0.00 0.00 3.11
2588 2942 3.189287 GCTTGACGGGCATATATGGAAAG 59.811 47.826 14.51 8.37 0.00 2.62
2645 2999 4.284829 TCAATCAGCCTATGTGTCACAA 57.715 40.909 10.28 0.00 0.00 3.33
2674 3028 8.837389 GTTCAGGTGTTTAACAAGAGTTTATCT 58.163 33.333 0.00 0.00 41.27 1.98
2683 3037 6.530181 GGAAACAAGTTCAGGTGTTTAACAAG 59.470 38.462 0.00 0.00 45.53 3.16
2686 3040 6.033966 CAGGAAACAAGTTCAGGTGTTTAAC 58.966 40.000 2.02 0.00 45.53 2.01
2692 3046 2.023673 TGCAGGAAACAAGTTCAGGTG 58.976 47.619 0.00 0.00 38.06 4.00
2694 3048 3.799281 TTTGCAGGAAACAAGTTCAGG 57.201 42.857 0.00 0.00 38.06 3.86
2727 3094 7.524294 AAAAACAGCAAATAGTTTCTGTGTG 57.476 32.000 8.90 0.00 39.46 3.82
2842 3238 7.630728 GCGGAGATCTGTATGTAGGCAATATAA 60.631 40.741 0.00 0.00 0.00 0.98
2851 3251 3.498777 TCTTCGCGGAGATCTGTATGTAG 59.501 47.826 14.60 0.00 0.00 2.74
2868 3268 7.042321 TGGTCAAGTAAGTATTGTTTGTCTTCG 60.042 37.037 0.00 0.00 0.00 3.79
2978 3382 1.268066 TCACATAGTGGCCAACGGTA 58.732 50.000 7.24 0.00 33.87 4.02
2981 3385 2.746904 TCATTTCACATAGTGGCCAACG 59.253 45.455 7.24 0.00 33.87 4.10
3004 4312 8.674263 AAAGAAACATGAGATGATGGAGTATC 57.326 34.615 0.00 0.00 36.29 2.24
3006 4314 8.762645 AGTAAAGAAACATGAGATGATGGAGTA 58.237 33.333 0.00 0.00 0.00 2.59
3026 4334 5.938710 GGTAAGGGTGGAAAGAAGAGTAAAG 59.061 44.000 0.00 0.00 0.00 1.85
3028 4336 5.160386 AGGTAAGGGTGGAAAGAAGAGTAA 58.840 41.667 0.00 0.00 0.00 2.24
3037 4345 2.181975 CCTACGAGGTAAGGGTGGAAA 58.818 52.381 0.00 0.00 0.00 3.13
3127 4435 3.206150 TCAGAGAGCAACCACAAGAAAC 58.794 45.455 0.00 0.00 0.00 2.78
3137 4445 3.045601 TGTAAGCCTTCAGAGAGCAAC 57.954 47.619 0.00 0.00 0.00 4.17
3139 4447 5.178797 GTTTATGTAAGCCTTCAGAGAGCA 58.821 41.667 0.00 0.00 0.00 4.26
3162 4470 2.830923 TGCATCCAAAATGTAACAGGGG 59.169 45.455 0.00 0.00 0.00 4.79
3189 4504 9.598517 GCACAATAATCCAATCCAGAATTTAAA 57.401 29.630 0.00 0.00 0.00 1.52
3192 4507 7.124599 TCTGCACAATAATCCAATCCAGAATTT 59.875 33.333 0.00 0.00 0.00 1.82
3199 4514 6.152932 ACATTCTGCACAATAATCCAATCC 57.847 37.500 0.00 0.00 0.00 3.01
3204 4519 7.221452 CAGCTTTTACATTCTGCACAATAATCC 59.779 37.037 0.00 0.00 0.00 3.01
3205 4520 7.756722 ACAGCTTTTACATTCTGCACAATAATC 59.243 33.333 0.00 0.00 0.00 1.75
3223 4538 2.476821 GCAGCATCAAACACAGCTTTT 58.523 42.857 0.00 0.00 34.61 2.27
3284 4599 1.071605 CGTGCTTTCTTCTTCCTCCG 58.928 55.000 0.00 0.00 0.00 4.63
3288 4603 2.224314 CCTTGTCGTGCTTTCTTCTTCC 59.776 50.000 0.00 0.00 0.00 3.46
3338 4653 1.865248 GCGAGCAAACAACAACAGCAT 60.865 47.619 0.00 0.00 0.00 3.79
3428 4745 6.270815 GCAATCATACATGCTGACTGAAAAT 58.729 36.000 10.49 0.00 39.46 1.82
3544 4871 8.844244 GTCCTACTTCTGTTAGGTATCGATAAA 58.156 37.037 6.72 0.00 32.93 1.40
3570 4897 6.627395 AGAGTGGTCTATTCTATGAACTCG 57.373 41.667 0.00 0.00 38.23 4.18
3612 4939 2.494073 GGGAGTTCAGAGTCCACTACAG 59.506 54.545 2.96 0.00 45.69 2.74
3646 4974 2.971307 AGTTTTAAAATGGGGCGCATG 58.029 42.857 18.40 0.00 0.00 4.06
3647 4975 3.694043 AAGTTTTAAAATGGGGCGCAT 57.306 38.095 11.73 11.73 0.00 4.73
3649 4977 5.410132 ACAAATAAGTTTTAAAATGGGGCGC 59.590 36.000 3.52 0.00 0.00 6.53
3650 4978 6.647067 TCACAAATAAGTTTTAAAATGGGGCG 59.353 34.615 3.52 0.00 0.00 6.13
3651 4979 7.971183 TCACAAATAAGTTTTAAAATGGGGC 57.029 32.000 3.52 0.00 0.00 5.80
3669 4997 9.974980 GTGTTCCTTATTCCTTAATTTCACAAA 57.025 29.630 0.00 0.00 0.00 2.83
3670 4998 9.137459 TGTGTTCCTTATTCCTTAATTTCACAA 57.863 29.630 0.00 0.00 0.00 3.33
3671 4999 8.698973 TGTGTTCCTTATTCCTTAATTTCACA 57.301 30.769 0.00 0.00 0.00 3.58
3674 5002 9.087424 GCATTGTGTTCCTTATTCCTTAATTTC 57.913 33.333 0.00 0.00 0.00 2.17
3675 5003 7.759433 CGCATTGTGTTCCTTATTCCTTAATTT 59.241 33.333 0.00 0.00 0.00 1.82
3676 5004 7.122055 TCGCATTGTGTTCCTTATTCCTTAATT 59.878 33.333 0.00 0.00 0.00 1.40
3677 5005 6.601613 TCGCATTGTGTTCCTTATTCCTTAAT 59.398 34.615 0.00 0.00 0.00 1.40
3678 5006 5.941058 TCGCATTGTGTTCCTTATTCCTTAA 59.059 36.000 0.00 0.00 0.00 1.85
3679 5007 5.492895 TCGCATTGTGTTCCTTATTCCTTA 58.507 37.500 0.00 0.00 0.00 2.69
3680 5008 4.331968 TCGCATTGTGTTCCTTATTCCTT 58.668 39.130 0.00 0.00 0.00 3.36
3681 5009 3.950397 TCGCATTGTGTTCCTTATTCCT 58.050 40.909 0.00 0.00 0.00 3.36
3682 5010 4.695217 TTCGCATTGTGTTCCTTATTCC 57.305 40.909 0.00 0.00 0.00 3.01
3683 5011 4.963953 CGATTCGCATTGTGTTCCTTATTC 59.036 41.667 0.00 0.00 0.00 1.75
3684 5012 4.201910 CCGATTCGCATTGTGTTCCTTATT 60.202 41.667 0.00 0.00 0.00 1.40
3685 5013 3.312421 CCGATTCGCATTGTGTTCCTTAT 59.688 43.478 0.00 0.00 0.00 1.73
3693 5021 1.468520 AGGAAACCGATTCGCATTGTG 59.531 47.619 0.00 0.00 39.05 3.33
3713 5041 3.565902 TGATTTTGTGCACGGTATGTTCA 59.434 39.130 13.13 5.99 0.00 3.18
3725 5057 6.494842 TCAGTCTTTACAAGTGATTTTGTGC 58.505 36.000 1.90 0.00 41.18 4.57
3759 5091 2.031465 ACCCCTGCAACCGTAACG 59.969 61.111 0.00 0.00 0.00 3.18
3793 5129 1.527034 TCACTTGAAGCATGCCAGTC 58.473 50.000 15.66 10.34 0.00 3.51
3877 5226 7.393551 TTAGTGACCTAAAAACGTCTTAACG 57.606 36.000 0.00 0.00 41.14 3.18
3911 5260 8.500773 TCTGTAAACTTTCATAAGGCGTTTTAG 58.499 33.333 0.00 0.00 35.61 1.85
3924 5273 5.881923 ACTACCACCTCTGTAAACTTTCA 57.118 39.130 0.00 0.00 0.00 2.69
3925 5274 7.563888 AAAACTACCACCTCTGTAAACTTTC 57.436 36.000 0.00 0.00 0.00 2.62
3976 5325 7.446001 TTGCAAAACATGAGATATACACACA 57.554 32.000 0.00 0.00 0.00 3.72
3977 5326 8.183536 TGATTGCAAAACATGAGATATACACAC 58.816 33.333 1.71 0.00 0.00 3.82
3998 5349 4.264253 TCCAGTAGTTGATTGGCTGATTG 58.736 43.478 0.00 0.00 34.88 2.67
4003 5354 2.269940 ACCTCCAGTAGTTGATTGGCT 58.730 47.619 0.00 0.00 34.88 4.75
4018 5369 5.602628 CACCAAAGTAATCTAGCTACCTCC 58.397 45.833 0.00 0.00 0.00 4.30
4020 5371 4.469945 TGCACCAAAGTAATCTAGCTACCT 59.530 41.667 0.00 0.00 0.00 3.08
4021 5372 4.766375 TGCACCAAAGTAATCTAGCTACC 58.234 43.478 0.00 0.00 0.00 3.18
4022 5373 6.238484 CCAATGCACCAAAGTAATCTAGCTAC 60.238 42.308 0.00 0.00 0.00 3.58
4023 5374 5.822519 CCAATGCACCAAAGTAATCTAGCTA 59.177 40.000 0.00 0.00 0.00 3.32
4061 5412 6.547880 TCAAGCTGTACCAAAACATTCCTAAA 59.452 34.615 0.00 0.00 0.00 1.85
4107 5459 5.163622 GGAAGCGATTCTTTTGGAATGATGA 60.164 40.000 13.83 0.00 43.90 2.92
4108 5460 5.039333 GGAAGCGATTCTTTTGGAATGATG 58.961 41.667 13.83 0.00 43.90 3.07
4109 5461 4.952335 AGGAAGCGATTCTTTTGGAATGAT 59.048 37.500 13.83 0.00 43.90 2.45
4144 5496 6.045318 ACTCCTGAATCACAAGATACATTCG 58.955 40.000 0.00 0.00 33.08 3.34
4174 5526 9.297586 CGTAGTAGTATCAGCAAAAAGAACATA 57.702 33.333 0.00 0.00 0.00 2.29
4195 5547 9.695217 CAACCCAGATCGAAGTTGATACGTAGT 62.695 44.444 15.49 0.00 42.81 2.73
4196 5548 4.036498 ACCCAGATCGAAGTTGATACGTAG 59.964 45.833 0.08 0.00 0.00 3.51
4197 5549 3.949754 ACCCAGATCGAAGTTGATACGTA 59.050 43.478 0.00 0.00 0.00 3.57
4198 5550 2.758979 ACCCAGATCGAAGTTGATACGT 59.241 45.455 0.00 0.00 0.00 3.57
4199 5551 3.438297 ACCCAGATCGAAGTTGATACG 57.562 47.619 0.00 0.00 0.00 3.06
4200 5552 3.871594 CCAACCCAGATCGAAGTTGATAC 59.128 47.826 19.81 0.00 41.65 2.24
4215 5567 0.754957 CTTTGTGAGCCACCAACCCA 60.755 55.000 3.33 0.00 32.73 4.51
4216 5568 0.755327 ACTTTGTGAGCCACCAACCC 60.755 55.000 3.33 0.00 32.73 4.11
4219 5571 1.340502 TGTGACTTTGTGAGCCACCAA 60.341 47.619 3.33 0.00 32.73 3.67
4221 5573 1.388547 TTGTGACTTTGTGAGCCACC 58.611 50.000 3.33 0.00 32.73 4.61
4223 5575 1.337703 GCATTGTGACTTTGTGAGCCA 59.662 47.619 0.00 0.00 0.00 4.75
4224 5576 1.337703 TGCATTGTGACTTTGTGAGCC 59.662 47.619 0.00 0.00 0.00 4.70
4225 5577 2.780065 TGCATTGTGACTTTGTGAGC 57.220 45.000 0.00 0.00 0.00 4.26
4248 5601 5.163561 ACCCTGTATTTGTTTGTTCACTGTG 60.164 40.000 0.17 0.17 0.00 3.66
4264 5617 2.367202 CCAGACGGCCACCCTGTAT 61.367 63.158 2.24 0.00 0.00 2.29
4267 5620 4.394712 GTCCAGACGGCCACCCTG 62.395 72.222 2.24 6.29 0.00 4.45
4280 5806 1.526686 GGCCATGATGATGCGTCCA 60.527 57.895 2.83 0.00 0.00 4.02
4283 5809 1.105167 CCAAGGCCATGATGATGCGT 61.105 55.000 10.18 0.00 0.00 5.24
4316 5842 1.201429 GGAGCCAGAGGTTCTTGGGA 61.201 60.000 0.00 0.00 33.37 4.37
4319 5845 1.078848 CGGGAGCCAGAGGTTCTTG 60.079 63.158 0.00 0.00 33.37 3.02
4364 5896 0.895559 TGAGGCGAGTGCAGAGAGAA 60.896 55.000 0.00 0.00 45.35 2.87
4367 5899 2.999485 GCTGAGGCGAGTGCAGAGA 61.999 63.158 0.00 0.00 45.35 3.10
4395 5927 4.475135 GGTCGCCTTGGAGGGAGC 62.475 72.222 0.00 0.00 35.37 4.70
4397 5929 2.683933 GAGGTCGCCTTGGAGGGA 60.684 66.667 0.00 0.00 35.37 4.20
4482 6014 3.760035 ACCTACACGCCGAGCCAG 61.760 66.667 0.00 0.00 0.00 4.85
4589 6121 3.263503 CTCACGGACTTCGGCGTCA 62.264 63.158 6.85 0.00 44.45 4.35
4654 6186 3.596214 GCGTCAACTATTTCCTGGAAGA 58.404 45.455 9.42 0.00 34.07 2.87
4677 6209 1.296056 CGGGCGGTAACTGGTTCTTG 61.296 60.000 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.