Multiple sequence alignment - TraesCS7A01G191100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G191100 chr7A 100.000 4111 0 0 1 4111 148989266 148985156 0.000000e+00 7592.0
1 TraesCS7A01G191100 chr7D 89.347 3736 149 105 475 4074 147692213 147688591 0.000000e+00 4464.0
2 TraesCS7A01G191100 chr7D 85.806 155 15 7 78 228 147695877 147695726 1.530000e-34 158.0
3 TraesCS7A01G191100 chr7B 88.497 3860 159 104 351 4074 110702132 110698422 0.000000e+00 4405.0
4 TraesCS7A01G191100 chr7B 86.452 155 14 7 78 228 110702449 110702298 3.290000e-36 163.0
5 TraesCS7A01G191100 chr5B 100.000 33 0 0 297 329 571627245 571627213 1.230000e-05 62.1
6 TraesCS7A01G191100 chr4D 100.000 33 0 0 297 329 483456879 483456911 1.230000e-05 62.1
7 TraesCS7A01G191100 chr4D 100.000 32 0 0 298 329 209094532 209094563 4.440000e-05 60.2
8 TraesCS7A01G191100 chr3D 100.000 33 0 0 297 329 547618000 547618032 1.230000e-05 62.1
9 TraesCS7A01G191100 chr1B 100.000 30 0 0 300 329 361484726 361484697 5.740000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G191100 chr7A 148985156 148989266 4110 True 7592 7592 100.0000 1 4111 1 chr7A.!!$R1 4110
1 TraesCS7A01G191100 chr7D 147688591 147695877 7286 True 2311 4464 87.5765 78 4074 2 chr7D.!!$R1 3996
2 TraesCS7A01G191100 chr7B 110698422 110702449 4027 True 2284 4405 87.4745 78 4074 2 chr7B.!!$R1 3996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
270 272 0.036483 ACGGTAGCACATGCATCACA 60.036 50.0 6.64 0.0 45.16 3.58 F
506 3807 0.042188 CGAGCACCGCAATTAATCCG 60.042 55.0 0.00 0.0 0.00 4.18 F
739 4067 0.176680 ATACTCCCAAGCAGCAGTCG 59.823 55.0 0.00 0.0 0.00 4.18 F
2237 5659 0.239879 TGCCGCCATCGTTTTCTTTC 59.760 50.0 0.00 0.0 0.00 2.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1672 5055 0.036732 AAGCCAGTTGATCTTCGCCA 59.963 50.0 0.0 0.0 0.00 5.69 R
2127 5535 0.250381 GAGGATGATGGAGCAGGCAG 60.250 60.0 0.0 0.0 0.00 4.85 R
2580 6026 0.165944 CGACCGATCAAACCAGCAAC 59.834 55.0 0.0 0.0 0.00 4.17 R
4091 7584 0.032615 CCCTCTGAGCCCTCTACAGT 60.033 60.0 0.0 0.0 33.93 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.685447 TTGTCCGGTCATTGTCCG 57.315 55.556 14.32 14.32 46.49 4.79
18 19 1.749665 TTGTCCGGTCATTGTCCGT 59.250 52.632 18.63 0.00 45.63 4.69
19 20 0.320073 TTGTCCGGTCATTGTCCGTC 60.320 55.000 18.63 12.52 45.63 4.79
20 21 1.447314 GTCCGGTCATTGTCCGTCC 60.447 63.158 18.63 7.05 45.63 4.79
21 22 1.909287 TCCGGTCATTGTCCGTCCA 60.909 57.895 18.63 2.53 45.63 4.02
22 23 1.447838 CCGGTCATTGTCCGTCCAG 60.448 63.158 18.63 2.51 45.63 3.86
23 24 1.447838 CGGTCATTGTCCGTCCAGG 60.448 63.158 13.25 0.00 42.62 4.45
24 25 1.745489 GGTCATTGTCCGTCCAGGC 60.745 63.158 0.00 0.00 40.77 4.85
25 26 1.003839 GTCATTGTCCGTCCAGGCA 60.004 57.895 0.00 0.00 40.77 4.75
26 27 1.003839 TCATTGTCCGTCCAGGCAC 60.004 57.895 0.00 0.00 40.77 5.01
27 28 2.047274 ATTGTCCGTCCAGGCACG 60.047 61.111 4.86 4.86 40.77 5.34
28 29 2.879233 ATTGTCCGTCCAGGCACGT 61.879 57.895 9.65 0.00 40.77 4.49
29 30 3.800685 TTGTCCGTCCAGGCACGTG 62.801 63.158 12.28 12.28 40.77 4.49
30 31 4.295119 GTCCGTCCAGGCACGTGT 62.295 66.667 18.38 0.00 40.77 4.49
31 32 4.293648 TCCGTCCAGGCACGTGTG 62.294 66.667 18.38 8.35 40.77 3.82
41 42 3.339464 CACGTGTGCGGGCGTTTA 61.339 61.111 7.58 0.00 43.45 2.01
42 43 3.039588 ACGTGTGCGGGCGTTTAG 61.040 61.111 0.00 0.00 43.45 1.85
43 44 3.784412 CGTGTGCGGGCGTTTAGG 61.784 66.667 0.00 0.00 0.00 2.69
44 45 3.428282 GTGTGCGGGCGTTTAGGG 61.428 66.667 0.00 0.00 0.00 3.53
45 46 3.627952 TGTGCGGGCGTTTAGGGA 61.628 61.111 0.00 0.00 0.00 4.20
46 47 2.358984 GTGCGGGCGTTTAGGGAA 60.359 61.111 0.00 0.00 0.00 3.97
47 48 2.358984 TGCGGGCGTTTAGGGAAC 60.359 61.111 0.00 0.00 34.82 3.62
66 67 3.271055 ACGGAGTTTGTTACTTGTGGT 57.729 42.857 0.00 0.00 37.78 4.16
67 68 3.613030 ACGGAGTTTGTTACTTGTGGTT 58.387 40.909 0.00 0.00 37.78 3.67
68 69 3.375922 ACGGAGTTTGTTACTTGTGGTTG 59.624 43.478 0.00 0.00 37.78 3.77
69 70 3.375922 CGGAGTTTGTTACTTGTGGTTGT 59.624 43.478 0.00 0.00 37.17 3.32
70 71 4.571580 CGGAGTTTGTTACTTGTGGTTGTA 59.428 41.667 0.00 0.00 37.17 2.41
71 72 5.277154 CGGAGTTTGTTACTTGTGGTTGTAG 60.277 44.000 0.00 0.00 37.17 2.74
72 73 5.818857 GGAGTTTGTTACTTGTGGTTGTAGA 59.181 40.000 0.00 0.00 37.17 2.59
73 74 6.485648 GGAGTTTGTTACTTGTGGTTGTAGAT 59.514 38.462 0.00 0.00 37.17 1.98
74 75 7.259290 AGTTTGTTACTTGTGGTTGTAGATG 57.741 36.000 0.00 0.00 31.29 2.90
75 76 5.682943 TTGTTACTTGTGGTTGTAGATGC 57.317 39.130 0.00 0.00 0.00 3.91
76 77 4.069304 TGTTACTTGTGGTTGTAGATGCC 58.931 43.478 0.00 0.00 0.00 4.40
77 78 2.200373 ACTTGTGGTTGTAGATGCCC 57.800 50.000 0.00 0.00 0.00 5.36
78 79 1.705186 ACTTGTGGTTGTAGATGCCCT 59.295 47.619 0.00 0.00 0.00 5.19
79 80 2.910319 ACTTGTGGTTGTAGATGCCCTA 59.090 45.455 0.00 0.00 0.00 3.53
80 81 3.055094 ACTTGTGGTTGTAGATGCCCTAG 60.055 47.826 0.00 0.00 0.00 3.02
81 82 1.837439 TGTGGTTGTAGATGCCCTAGG 59.163 52.381 0.06 0.06 0.00 3.02
116 118 2.095718 CGCCTTTTCTAACAGAGCCAAC 60.096 50.000 0.00 0.00 0.00 3.77
117 119 2.095718 GCCTTTTCTAACAGAGCCAACG 60.096 50.000 0.00 0.00 0.00 4.10
118 120 3.139077 CCTTTTCTAACAGAGCCAACGT 58.861 45.455 0.00 0.00 0.00 3.99
119 121 3.058914 CCTTTTCTAACAGAGCCAACGTG 60.059 47.826 0.00 0.00 0.00 4.49
120 122 1.508632 TTCTAACAGAGCCAACGTGC 58.491 50.000 0.00 0.00 0.00 5.34
121 123 0.391228 TCTAACAGAGCCAACGTGCA 59.609 50.000 0.36 0.00 0.00 4.57
124 126 0.748005 AACAGAGCCAACGTGCAACT 60.748 50.000 0.36 0.00 31.75 3.16
126 128 1.270839 ACAGAGCCAACGTGCAACTAT 60.271 47.619 0.36 0.00 31.75 2.12
132 134 2.095372 GCCAACGTGCAACTATAGGAAC 59.905 50.000 4.43 0.00 31.75 3.62
170 172 2.226330 TGTTTCCTCACGGTGAATTGG 58.774 47.619 12.54 10.15 0.00 3.16
173 175 1.378514 CCTCACGGTGAATTGGGGG 60.379 63.158 12.54 4.93 28.49 5.40
202 204 3.613299 GCTACGACTTCCTTCTTTAGCAC 59.387 47.826 0.00 0.00 0.00 4.40
217 219 7.259290 TCTTTAGCACTTTCAGTAACTTTGG 57.741 36.000 0.00 0.00 0.00 3.28
222 224 3.383185 CACTTTCAGTAACTTTGGGGCAA 59.617 43.478 0.00 0.00 0.00 4.52
223 225 4.039124 CACTTTCAGTAACTTTGGGGCAAT 59.961 41.667 0.00 0.00 0.00 3.56
224 226 4.039124 ACTTTCAGTAACTTTGGGGCAATG 59.961 41.667 0.00 0.00 0.00 2.82
225 227 1.892474 TCAGTAACTTTGGGGCAATGC 59.108 47.619 0.00 0.00 0.00 3.56
226 228 1.895131 CAGTAACTTTGGGGCAATGCT 59.105 47.619 4.82 0.00 0.00 3.79
227 229 3.088532 CAGTAACTTTGGGGCAATGCTA 58.911 45.455 4.82 0.00 0.00 3.49
228 230 3.089284 AGTAACTTTGGGGCAATGCTAC 58.911 45.455 4.82 0.00 0.00 3.58
229 231 0.887933 AACTTTGGGGCAATGCTACG 59.112 50.000 4.82 0.00 0.00 3.51
230 232 0.965363 ACTTTGGGGCAATGCTACGG 60.965 55.000 4.82 0.00 0.00 4.02
231 233 2.283472 CTTTGGGGCAATGCTACGGC 62.283 60.000 4.82 0.00 39.26 5.68
240 242 3.439008 TGCTACGGCGCATAGCTA 58.561 55.556 31.06 20.22 44.52 3.32
241 243 1.285950 TGCTACGGCGCATAGCTAG 59.714 57.895 31.06 17.06 44.52 3.42
242 244 2.749110 TGCTACGGCGCATAGCTAGC 62.749 60.000 31.06 23.02 44.88 3.42
264 266 1.766143 GCTAGCACGGTAGCACATGC 61.766 60.000 20.34 0.00 44.26 4.06
265 267 0.460109 CTAGCACGGTAGCACATGCA 60.460 55.000 6.64 0.00 45.16 3.96
268 270 1.368345 GCACGGTAGCACATGCATCA 61.368 55.000 6.64 0.00 45.16 3.07
269 271 0.374758 CACGGTAGCACATGCATCAC 59.625 55.000 6.64 1.01 45.16 3.06
270 272 0.036483 ACGGTAGCACATGCATCACA 60.036 50.000 6.64 0.00 45.16 3.58
271 273 1.085893 CGGTAGCACATGCATCACAA 58.914 50.000 6.64 0.00 45.16 3.33
272 274 1.468127 CGGTAGCACATGCATCACAAA 59.532 47.619 6.64 0.00 45.16 2.83
273 275 2.095314 CGGTAGCACATGCATCACAAAA 60.095 45.455 6.64 0.00 45.16 2.44
275 277 3.057315 GGTAGCACATGCATCACAAAACT 60.057 43.478 6.64 0.00 45.16 2.66
276 278 3.293311 AGCACATGCATCACAAAACTC 57.707 42.857 6.64 0.00 45.16 3.01
277 279 2.889045 AGCACATGCATCACAAAACTCT 59.111 40.909 6.64 0.00 45.16 3.24
278 280 3.057736 AGCACATGCATCACAAAACTCTC 60.058 43.478 6.64 0.00 45.16 3.20
279 281 3.304861 GCACATGCATCACAAAACTCTCA 60.305 43.478 0.00 0.00 41.59 3.27
281 283 5.466819 CACATGCATCACAAAACTCTCATT 58.533 37.500 0.00 0.00 0.00 2.57
282 284 5.924254 CACATGCATCACAAAACTCTCATTT 59.076 36.000 0.00 0.00 0.00 2.32
283 285 6.422701 CACATGCATCACAAAACTCTCATTTT 59.577 34.615 0.00 0.00 31.87 1.82
284 286 6.987992 ACATGCATCACAAAACTCTCATTTTT 59.012 30.769 0.00 0.00 29.17 1.94
286 288 6.808829 TGCATCACAAAACTCTCATTTTTCT 58.191 32.000 0.00 0.00 29.17 2.52
288 290 8.077991 TGCATCACAAAACTCTCATTTTTCTAG 58.922 33.333 0.00 0.00 29.17 2.43
289 291 8.292448 GCATCACAAAACTCTCATTTTTCTAGA 58.708 33.333 0.00 0.00 29.17 2.43
335 337 1.557099 TCACACTTACATCCCTCGCT 58.443 50.000 0.00 0.00 0.00 4.93
336 338 1.204704 TCACACTTACATCCCTCGCTG 59.795 52.381 0.00 0.00 0.00 5.18
337 339 1.066858 CACACTTACATCCCTCGCTGT 60.067 52.381 0.00 0.00 0.00 4.40
338 340 1.623811 ACACTTACATCCCTCGCTGTT 59.376 47.619 0.00 0.00 0.00 3.16
339 341 2.271800 CACTTACATCCCTCGCTGTTC 58.728 52.381 0.00 0.00 0.00 3.18
340 342 1.135083 ACTTACATCCCTCGCTGTTCG 60.135 52.381 0.00 0.00 40.15 3.95
341 343 0.459585 TTACATCCCTCGCTGTTCGC 60.460 55.000 0.00 0.00 38.27 4.70
342 344 1.320344 TACATCCCTCGCTGTTCGCT 61.320 55.000 0.00 0.00 38.27 4.93
343 345 1.448540 CATCCCTCGCTGTTCGCTT 60.449 57.895 0.00 0.00 38.27 4.68
345 347 0.179108 ATCCCTCGCTGTTCGCTTAC 60.179 55.000 0.00 0.00 38.27 2.34
346 348 1.810030 CCCTCGCTGTTCGCTTACC 60.810 63.158 0.00 0.00 38.27 2.85
349 3549 0.109272 CTCGCTGTTCGCTTACCTGA 60.109 55.000 0.00 0.00 38.27 3.86
360 3560 4.637276 TCGCTTACCTGATCAAAGTTTGA 58.363 39.130 20.14 20.14 45.01 2.69
371 3571 3.188492 TCAAAGTTTGAAGACGTGCGTA 58.812 40.909 15.92 0.00 36.59 4.42
388 3588 3.118775 TGCGTAACACTTGCTCTATGGAT 60.119 43.478 0.00 0.00 0.00 3.41
390 3590 4.681942 GCGTAACACTTGCTCTATGGATAG 59.318 45.833 0.00 0.00 0.00 2.08
392 3592 6.682746 CGTAACACTTGCTCTATGGATAGAT 58.317 40.000 0.00 0.00 38.60 1.98
393 3593 7.575155 GCGTAACACTTGCTCTATGGATAGATA 60.575 40.741 0.00 0.00 38.60 1.98
394 3594 8.462811 CGTAACACTTGCTCTATGGATAGATAT 58.537 37.037 0.00 0.00 38.60 1.63
406 3617 8.972127 TCTATGGATAGATATACCAGAACAAGC 58.028 37.037 0.00 0.00 37.12 4.01
423 3636 7.377928 CAGAACAAGCATACAAGAAAAGACAAG 59.622 37.037 0.00 0.00 0.00 3.16
425 3638 4.773323 AGCATACAAGAAAAGACAAGCC 57.227 40.909 0.00 0.00 0.00 4.35
450 3663 4.260355 CAATGCATGGGCGAGGCG 62.260 66.667 0.00 0.00 45.35 5.52
506 3807 0.042188 CGAGCACCGCAATTAATCCG 60.042 55.000 0.00 0.00 0.00 4.18
511 3812 1.400142 CACCGCAATTAATCCGCAAGA 59.600 47.619 9.68 0.00 43.02 3.02
523 3824 1.495951 CGCAAGAAGCCGTACCAAC 59.504 57.895 0.00 0.00 41.38 3.77
537 3838 3.504906 CGTACCAACAACAGTCCTCTCTA 59.495 47.826 0.00 0.00 0.00 2.43
556 3859 1.972872 ATATTTTGAGGAGCCCTGCG 58.027 50.000 0.00 0.00 31.76 5.18
663 3967 7.947782 TCTTCCCTCCCACAACTAATAATAT 57.052 36.000 0.00 0.00 0.00 1.28
696 4001 3.979497 CCCTGGGAAAAGCCGGGT 61.979 66.667 7.01 0.00 37.63 5.28
739 4067 0.176680 ATACTCCCAAGCAGCAGTCG 59.823 55.000 0.00 0.00 0.00 4.18
756 4084 0.465705 TCGCCCATCATCTTCAGTCC 59.534 55.000 0.00 0.00 0.00 3.85
757 4085 0.533755 CGCCCATCATCTTCAGTCCC 60.534 60.000 0.00 0.00 0.00 4.46
939 4279 0.818445 TCCAGTACTCTCGATCGGCC 60.818 60.000 16.41 0.00 0.00 6.13
971 4311 2.587194 CCCCGCTGCTGAATCTCG 60.587 66.667 0.00 0.00 0.00 4.04
1153 4495 0.615331 CAAGTGAGCCCTGCCTTCTA 59.385 55.000 0.00 0.00 0.00 2.10
1154 4496 0.908198 AAGTGAGCCCTGCCTTCTAG 59.092 55.000 0.00 0.00 0.00 2.43
1155 4497 1.153269 GTGAGCCCTGCCTTCTAGC 60.153 63.158 0.00 0.00 0.00 3.42
1156 4498 1.306482 TGAGCCCTGCCTTCTAGCT 60.306 57.895 0.00 0.00 36.25 3.32
1158 4500 2.038814 GAGCCCTGCCTTCTAGCTCC 62.039 65.000 0.00 0.00 43.27 4.70
1159 4501 2.069430 GCCCTGCCTTCTAGCTCCT 61.069 63.158 0.00 0.00 0.00 3.69
1160 4502 2.038814 GCCCTGCCTTCTAGCTCCTC 62.039 65.000 0.00 0.00 0.00 3.71
1161 4503 1.406860 CCCTGCCTTCTAGCTCCTCC 61.407 65.000 0.00 0.00 0.00 4.30
1162 4504 1.406860 CCTGCCTTCTAGCTCCTCCC 61.407 65.000 0.00 0.00 0.00 4.30
1163 4505 1.383248 TGCCTTCTAGCTCCTCCCC 60.383 63.158 0.00 0.00 0.00 4.81
1164 4506 1.074850 GCCTTCTAGCTCCTCCCCT 60.075 63.158 0.00 0.00 0.00 4.79
1165 4507 0.692756 GCCTTCTAGCTCCTCCCCTT 60.693 60.000 0.00 0.00 0.00 3.95
1176 4518 0.626382 CCTCCCCTTCCTTCCTTTCC 59.374 60.000 0.00 0.00 0.00 3.13
1196 4539 3.586174 TCCTCCATCCATCATCTTCATCC 59.414 47.826 0.00 0.00 0.00 3.51
1235 4587 2.350458 GCCACCGCCATCAACCAAT 61.350 57.895 0.00 0.00 0.00 3.16
1243 4595 1.474077 GCCATCAACCAATGTCCTGAC 59.526 52.381 0.00 0.00 0.00 3.51
1250 4610 1.021390 CCAATGTCCTGACGCACTCC 61.021 60.000 0.00 0.00 0.00 3.85
1257 4617 1.071471 CTGACGCACTCCCTTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
1262 4622 1.349688 ACGCACTCCCTTTGGTGATTA 59.650 47.619 0.00 0.00 35.69 1.75
1414 4794 1.069432 TCGTCTGCGACTTACTGTGTC 60.069 52.381 7.03 0.00 42.81 3.67
1659 5042 0.813184 CTACGGCGAAGGGTCAGTAA 59.187 55.000 16.62 0.00 0.00 2.24
1661 5044 1.477553 ACGGCGAAGGGTCAGTAATA 58.522 50.000 16.62 0.00 0.00 0.98
1663 5046 1.407979 CGGCGAAGGGTCAGTAATACT 59.592 52.381 0.00 0.00 0.00 2.12
1664 5047 2.620115 CGGCGAAGGGTCAGTAATACTA 59.380 50.000 0.00 0.00 0.00 1.82
1665 5048 3.549625 CGGCGAAGGGTCAGTAATACTAC 60.550 52.174 0.00 0.00 0.00 2.73
1666 5049 3.635836 GGCGAAGGGTCAGTAATACTACT 59.364 47.826 0.00 0.00 39.04 2.57
1682 5065 7.948278 AATACTACTGTTAATGGCGAAGATC 57.052 36.000 0.00 0.00 0.00 2.75
1695 5078 2.289002 GCGAAGATCAACTGGCTTATGG 59.711 50.000 0.00 0.00 0.00 2.74
1706 5089 3.492102 TGGCTTATGGTCAGATTAGGC 57.508 47.619 0.00 0.00 0.00 3.93
1760 5150 4.640201 GCTGCTGGATGATGGTTAAGTTAA 59.360 41.667 0.00 0.00 0.00 2.01
1761 5151 5.220931 GCTGCTGGATGATGGTTAAGTTAAG 60.221 44.000 0.00 0.00 0.00 1.85
1762 5152 5.815581 TGCTGGATGATGGTTAAGTTAAGT 58.184 37.500 0.00 0.00 0.00 2.24
1763 5153 6.953101 TGCTGGATGATGGTTAAGTTAAGTA 58.047 36.000 0.00 0.00 0.00 2.24
1764 5154 7.398829 TGCTGGATGATGGTTAAGTTAAGTAA 58.601 34.615 0.00 0.00 0.00 2.24
1765 5155 7.335924 TGCTGGATGATGGTTAAGTTAAGTAAC 59.664 37.037 0.00 0.00 36.46 2.50
1774 5164 7.672983 GGTTAAGTTAAGTAACCACTAACCC 57.327 40.000 17.56 7.72 46.62 4.11
1930 5324 3.148279 CCGTAAGCCGCTCCTCCT 61.148 66.667 0.00 0.00 34.38 3.69
1955 5350 0.883833 CAAACATTCGCCTCCAGCTT 59.116 50.000 0.00 0.00 40.39 3.74
1956 5351 2.083774 CAAACATTCGCCTCCAGCTTA 58.916 47.619 0.00 0.00 40.39 3.09
1957 5352 1.739067 AACATTCGCCTCCAGCTTAC 58.261 50.000 0.00 0.00 40.39 2.34
1998 5405 4.818546 CCTTAACTGACCATCATCCATGAC 59.181 45.833 0.00 0.00 40.03 3.06
1999 5406 3.287867 AACTGACCATCATCCATGACC 57.712 47.619 0.00 0.00 40.03 4.02
2000 5407 2.199208 ACTGACCATCATCCATGACCA 58.801 47.619 0.00 0.00 40.03 4.02
2001 5408 2.781757 ACTGACCATCATCCATGACCAT 59.218 45.455 0.00 0.00 40.03 3.55
2002 5409 3.146847 CTGACCATCATCCATGACCATG 58.853 50.000 0.00 3.11 40.03 3.66
2016 5423 3.909732 TGACCATGGAATTATTGACCCC 58.090 45.455 21.47 0.00 0.00 4.95
2043 5450 4.227134 CCGAGGACATGGGAGGCG 62.227 72.222 0.00 0.00 0.00 5.52
2124 5532 3.430042 TTGATCAAAAGCTCTCTGCCT 57.570 42.857 5.45 0.00 44.23 4.75
2125 5533 2.708051 TGATCAAAAGCTCTCTGCCTG 58.292 47.619 0.00 0.00 44.23 4.85
2126 5534 1.401199 GATCAAAAGCTCTCTGCCTGC 59.599 52.381 0.00 0.00 44.23 4.85
2127 5535 0.607489 TCAAAAGCTCTCTGCCTGCC 60.607 55.000 0.00 0.00 44.23 4.85
2154 5562 0.765903 TCCATCATCCTCTGCCCCTC 60.766 60.000 0.00 0.00 0.00 4.30
2233 5655 4.690159 GATGCCGCCATCGTTTTC 57.310 55.556 0.00 0.00 38.59 2.29
2235 5657 0.451783 GATGCCGCCATCGTTTTCTT 59.548 50.000 0.00 0.00 38.59 2.52
2236 5658 0.887933 ATGCCGCCATCGTTTTCTTT 59.112 45.000 0.00 0.00 0.00 2.52
2237 5659 0.239879 TGCCGCCATCGTTTTCTTTC 59.760 50.000 0.00 0.00 0.00 2.62
2239 5661 1.068541 GCCGCCATCGTTTTCTTTCTT 60.069 47.619 0.00 0.00 0.00 2.52
2242 5682 3.668656 CCGCCATCGTTTTCTTTCTTTTC 59.331 43.478 0.00 0.00 0.00 2.29
2262 5702 9.664332 TCTTTTCTCCTATTTCTTTCTCTCATG 57.336 33.333 0.00 0.00 0.00 3.07
2264 5704 6.550938 TCTCCTATTTCTTTCTCTCATGCA 57.449 37.500 0.00 0.00 0.00 3.96
2266 5706 7.571919 TCTCCTATTTCTTTCTCTCATGCATT 58.428 34.615 0.00 0.00 0.00 3.56
2267 5707 7.714377 TCTCCTATTTCTTTCTCTCATGCATTC 59.286 37.037 0.00 0.00 0.00 2.67
2268 5708 7.571919 TCCTATTTCTTTCTCTCATGCATTCT 58.428 34.615 0.00 0.00 0.00 2.40
2269 5709 7.714377 TCCTATTTCTTTCTCTCATGCATTCTC 59.286 37.037 0.00 0.00 0.00 2.87
2270 5710 6.696441 ATTTCTTTCTCTCATGCATTCTCC 57.304 37.500 0.00 0.00 0.00 3.71
2271 5711 5.432680 TTCTTTCTCTCATGCATTCTCCT 57.567 39.130 0.00 0.00 0.00 3.69
2272 5712 5.021033 TCTTTCTCTCATGCATTCTCCTC 57.979 43.478 0.00 0.00 0.00 3.71
2388 5834 2.241880 CCCGCGTGTTTATAGCCCG 61.242 63.158 4.92 0.00 0.00 6.13
2518 5964 3.792124 GCGGCAGTGGCTTTAATTGATAC 60.792 47.826 15.48 0.00 40.87 2.24
2577 6023 1.404035 TGATGATGTGATGCTGCTTGC 59.596 47.619 0.00 0.00 43.25 4.01
2578 6024 1.676529 GATGATGTGATGCTGCTTGCT 59.323 47.619 0.00 0.00 43.37 3.91
2579 6025 1.541379 TGATGTGATGCTGCTTGCTT 58.459 45.000 0.00 0.00 43.37 3.91
2580 6026 1.201414 TGATGTGATGCTGCTTGCTTG 59.799 47.619 0.00 0.00 43.37 4.01
2596 6043 1.666888 GCTTGTTGCTGGTTTGATCGG 60.667 52.381 0.00 0.00 38.95 4.18
2598 6045 1.234821 TGTTGCTGGTTTGATCGGTC 58.765 50.000 0.00 0.00 0.00 4.79
2599 6046 0.165944 GTTGCTGGTTTGATCGGTCG 59.834 55.000 0.00 0.00 0.00 4.79
2600 6047 0.034198 TTGCTGGTTTGATCGGTCGA 59.966 50.000 0.00 0.00 0.00 4.20
2601 6048 0.669318 TGCTGGTTTGATCGGTCGAC 60.669 55.000 7.13 7.13 0.00 4.20
2602 6049 1.359459 GCTGGTTTGATCGGTCGACC 61.359 60.000 25.28 25.28 35.12 4.79
2870 6320 2.507992 CTCTCCAAGCTGCCGTCG 60.508 66.667 0.00 0.00 0.00 5.12
3160 6610 1.852351 CGTCGTCGTCGTCGTTCTC 60.852 63.158 12.51 1.74 41.73 2.87
3161 6611 1.852351 GTCGTCGTCGTCGTTCTCG 60.852 63.158 11.41 4.14 38.33 4.04
3162 6612 2.169563 CGTCGTCGTCGTTCTCGT 59.830 61.111 3.67 0.00 38.33 4.18
3163 6613 2.130219 CGTCGTCGTCGTTCTCGTG 61.130 63.158 3.67 0.00 38.33 4.35
3164 6614 1.083144 GTCGTCGTCGTTCTCGTGT 60.083 57.895 1.33 0.00 38.33 4.49
3165 6615 0.655626 GTCGTCGTCGTTCTCGTGTT 60.656 55.000 1.33 0.00 38.33 3.32
3166 6616 0.655337 TCGTCGTCGTTCTCGTGTTG 60.655 55.000 1.33 0.00 38.33 3.33
3167 6617 0.655337 CGTCGTCGTTCTCGTGTTGA 60.655 55.000 0.00 0.00 38.33 3.18
3168 6618 1.682982 GTCGTCGTTCTCGTGTTGAT 58.317 50.000 0.00 0.00 38.33 2.57
3169 6619 1.382419 GTCGTCGTTCTCGTGTTGATG 59.618 52.381 0.00 0.00 38.33 3.07
3170 6620 0.708370 CGTCGTTCTCGTGTTGATGG 59.292 55.000 0.00 0.00 38.33 3.51
3171 6621 0.438830 GTCGTTCTCGTGTTGATGGC 59.561 55.000 0.00 0.00 38.33 4.40
3172 6622 0.317160 TCGTTCTCGTGTTGATGGCT 59.683 50.000 0.00 0.00 38.33 4.75
3173 6623 1.148310 CGTTCTCGTGTTGATGGCTT 58.852 50.000 0.00 0.00 0.00 4.35
3220 6670 5.633927 TCGATCATATTATTACCACGACCG 58.366 41.667 0.00 0.00 0.00 4.79
3221 6671 4.264614 CGATCATATTATTACCACGACCGC 59.735 45.833 0.00 0.00 0.00 5.68
3240 6693 2.124736 CATCCCACGCCGAACCAT 60.125 61.111 0.00 0.00 0.00 3.55
3246 6699 2.047274 ACGCCGAACCATGGACTG 60.047 61.111 21.47 9.53 0.00 3.51
3247 6700 3.499737 CGCCGAACCATGGACTGC 61.500 66.667 21.47 17.50 0.00 4.40
3277 6730 2.574006 ATCATTGGCACAGTGTCTGT 57.426 45.000 6.72 0.00 46.52 3.41
3278 6731 1.882912 TCATTGGCACAGTGTCTGTC 58.117 50.000 6.72 0.00 46.52 3.51
3279 6732 0.877071 CATTGGCACAGTGTCTGTCC 59.123 55.000 6.72 0.00 43.43 4.02
3280 6733 0.603707 ATTGGCACAGTGTCTGTCCG 60.604 55.000 6.72 0.00 43.43 4.79
3282 6735 1.956170 GGCACAGTGTCTGTCCGTG 60.956 63.158 1.61 0.00 43.43 4.94
3283 6736 2.598632 GCACAGTGTCTGTCCGTGC 61.599 63.158 1.61 0.00 43.43 5.34
3285 6738 2.134287 ACAGTGTCTGTCCGTGCCT 61.134 57.895 0.00 0.00 41.21 4.75
3286 6739 1.373497 CAGTGTCTGTCCGTGCCTC 60.373 63.158 0.00 0.00 0.00 4.70
3287 6740 1.832608 AGTGTCTGTCCGTGCCTCA 60.833 57.895 0.00 0.00 0.00 3.86
3288 6741 1.664965 GTGTCTGTCCGTGCCTCAC 60.665 63.158 0.00 0.00 0.00 3.51
3298 6751 4.393155 TGCCTCACGCCGCTGATT 62.393 61.111 0.00 0.00 36.24 2.57
3299 6752 2.202878 GCCTCACGCCGCTGATTA 60.203 61.111 0.00 0.00 0.00 1.75
3300 6753 1.595382 GCCTCACGCCGCTGATTAT 60.595 57.895 0.00 0.00 0.00 1.28
3301 6754 0.319555 GCCTCACGCCGCTGATTATA 60.320 55.000 0.00 0.00 0.00 0.98
3302 6755 1.673033 GCCTCACGCCGCTGATTATAT 60.673 52.381 0.00 0.00 0.00 0.86
3306 6759 2.058798 CACGCCGCTGATTATATCGTT 58.941 47.619 0.00 0.00 0.00 3.85
3330 6785 1.674441 CTTGATCTGGCCGTACGTAGA 59.326 52.381 15.21 14.45 0.00 2.59
3349 6805 6.206243 ACGTAGAGTACAATGTGAGTAACAGT 59.794 38.462 0.00 0.00 43.64 3.55
3353 6809 7.376615 AGAGTACAATGTGAGTAACAGTTACC 58.623 38.462 18.27 11.21 43.64 2.85
3399 6855 3.064682 TGGATTTGTCCATCGCATTTACG 59.935 43.478 0.00 0.00 34.33 3.18
3418 6874 1.069432 CGCATGCCTGTTATGAGATGC 60.069 52.381 13.15 0.00 34.23 3.91
3440 6896 1.077212 ATGCATGACACCTGAGGGC 60.077 57.895 2.38 0.00 35.63 5.19
3603 7059 3.001395 GTCCGATACGACCAATCTCAG 57.999 52.381 0.00 0.00 0.00 3.35
3612 7068 0.820871 ACCAATCTCAGCTCCTCGAC 59.179 55.000 0.00 0.00 0.00 4.20
3631 7087 1.249407 CCTCAGCTAGGTACGGATCC 58.751 60.000 0.00 0.00 40.94 3.36
3657 7124 7.827701 TCGAGTACTATCTTTGATTCTTGTGT 58.172 34.615 0.00 0.00 0.00 3.72
3658 7125 7.755373 TCGAGTACTATCTTTGATTCTTGTGTG 59.245 37.037 0.00 0.00 0.00 3.82
3659 7126 7.542477 CGAGTACTATCTTTGATTCTTGTGTGT 59.458 37.037 0.00 0.00 0.00 3.72
3660 7127 8.539770 AGTACTATCTTTGATTCTTGTGTGTG 57.460 34.615 0.00 0.00 0.00 3.82
3667 7134 1.237285 ATTCTTGTGTGTGCTCGGGC 61.237 55.000 0.00 0.00 39.26 6.13
3694 7161 6.128929 CGGGTGAAATTTTTCCGAAGATTTTC 60.129 38.462 17.28 10.12 42.94 2.29
3699 7166 6.726258 AATTTTTCCGAAGATTTTCATGGC 57.274 33.333 0.00 0.00 32.67 4.40
3894 7381 2.223845 TCGCACAACACAATCATCAGTG 59.776 45.455 0.00 0.00 41.40 3.66
3895 7382 2.322161 GCACAACACAATCATCAGTGC 58.678 47.619 0.00 0.00 43.08 4.40
3896 7383 2.577450 CACAACACAATCATCAGTGCG 58.423 47.619 0.00 0.00 39.30 5.34
3934 7421 1.597742 CGGGAGCGATGGAATGATTT 58.402 50.000 0.00 0.00 0.00 2.17
4096 7589 4.988065 GCTGTTGCCGAGACTGTA 57.012 55.556 0.00 0.00 0.00 2.74
4097 7590 2.743195 GCTGTTGCCGAGACTGTAG 58.257 57.895 0.00 0.00 0.00 2.74
4098 7591 0.243907 GCTGTTGCCGAGACTGTAGA 59.756 55.000 0.00 0.00 0.00 2.59
4099 7592 1.734047 GCTGTTGCCGAGACTGTAGAG 60.734 57.143 0.00 0.00 0.00 2.43
4100 7593 0.888619 TGTTGCCGAGACTGTAGAGG 59.111 55.000 0.00 0.00 0.00 3.69
4101 7594 0.173708 GTTGCCGAGACTGTAGAGGG 59.826 60.000 0.00 0.00 0.00 4.30
4102 7595 1.605058 TTGCCGAGACTGTAGAGGGC 61.605 60.000 0.00 0.00 40.88 5.19
4103 7596 1.755008 GCCGAGACTGTAGAGGGCT 60.755 63.158 0.00 0.00 37.57 5.19
4104 7597 1.730451 GCCGAGACTGTAGAGGGCTC 61.730 65.000 0.00 0.00 37.57 4.70
4105 7598 0.394488 CCGAGACTGTAGAGGGCTCA 60.394 60.000 11.00 0.00 0.00 4.26
4106 7599 1.021202 CGAGACTGTAGAGGGCTCAG 58.979 60.000 11.00 0.00 35.60 3.35
4107 7600 1.407575 CGAGACTGTAGAGGGCTCAGA 60.408 57.143 11.00 0.00 33.93 3.27
4108 7601 2.297701 GAGACTGTAGAGGGCTCAGAG 58.702 57.143 7.02 0.00 33.93 3.35
4109 7602 1.064017 AGACTGTAGAGGGCTCAGAGG 60.064 57.143 0.00 0.00 33.93 3.69
4110 7603 0.032615 ACTGTAGAGGGCTCAGAGGG 60.033 60.000 0.00 0.00 33.93 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.685447 CGGACAATGACCGGACAA 57.315 55.556 15.88 0.00 45.65 3.18
6 7 1.745489 GCCTGGACGGACAATGACC 60.745 63.158 0.00 0.00 33.16 4.02
7 8 1.003839 TGCCTGGACGGACAATGAC 60.004 57.895 0.00 0.00 33.16 3.06
8 9 1.003839 GTGCCTGGACGGACAATGA 60.004 57.895 0.00 0.00 33.16 2.57
9 10 2.390599 CGTGCCTGGACGGACAATG 61.391 63.158 3.06 0.00 35.65 2.82
10 11 2.047274 CGTGCCTGGACGGACAAT 60.047 61.111 3.06 0.00 35.65 2.71
11 12 3.542676 ACGTGCCTGGACGGACAA 61.543 61.111 15.46 0.00 43.84 3.18
12 13 4.293648 CACGTGCCTGGACGGACA 62.294 66.667 15.46 0.00 43.84 4.02
13 14 4.295119 ACACGTGCCTGGACGGAC 62.295 66.667 17.22 0.99 43.84 4.79
14 15 4.293648 CACACGTGCCTGGACGGA 62.294 66.667 17.22 0.00 43.84 4.69
24 25 3.289816 CTAAACGCCCGCACACGTG 62.290 63.158 15.48 15.48 42.68 4.49
25 26 3.039588 CTAAACGCCCGCACACGT 61.040 61.111 0.00 0.00 46.07 4.49
26 27 3.784412 CCTAAACGCCCGCACACG 61.784 66.667 0.00 0.00 39.67 4.49
27 28 3.428282 CCCTAAACGCCCGCACAC 61.428 66.667 0.00 0.00 0.00 3.82
28 29 3.179888 TTCCCTAAACGCCCGCACA 62.180 57.895 0.00 0.00 0.00 4.57
29 30 2.358984 TTCCCTAAACGCCCGCAC 60.359 61.111 0.00 0.00 0.00 5.34
30 31 2.358984 GTTCCCTAAACGCCCGCA 60.359 61.111 0.00 0.00 0.00 5.69
37 38 5.059161 AGTAACAAACTCCGTTCCCTAAAC 58.941 41.667 0.00 0.00 30.33 2.01
38 39 5.294734 AGTAACAAACTCCGTTCCCTAAA 57.705 39.130 0.00 0.00 30.33 1.85
39 40 4.961438 AGTAACAAACTCCGTTCCCTAA 57.039 40.909 0.00 0.00 30.33 2.69
40 41 4.101430 ACAAGTAACAAACTCCGTTCCCTA 59.899 41.667 0.00 0.00 37.50 3.53
41 42 3.118149 ACAAGTAACAAACTCCGTTCCCT 60.118 43.478 0.00 0.00 37.50 4.20
42 43 3.002965 CACAAGTAACAAACTCCGTTCCC 59.997 47.826 0.00 0.00 37.50 3.97
43 44 3.002965 CCACAAGTAACAAACTCCGTTCC 59.997 47.826 0.00 0.00 37.50 3.62
44 45 3.624410 ACCACAAGTAACAAACTCCGTTC 59.376 43.478 0.00 0.00 37.50 3.95
45 46 3.613030 ACCACAAGTAACAAACTCCGTT 58.387 40.909 0.00 0.00 37.50 4.44
46 47 3.271055 ACCACAAGTAACAAACTCCGT 57.729 42.857 0.00 0.00 37.50 4.69
47 48 3.375922 ACAACCACAAGTAACAAACTCCG 59.624 43.478 0.00 0.00 37.50 4.63
48 49 4.976224 ACAACCACAAGTAACAAACTCC 57.024 40.909 0.00 0.00 37.50 3.85
49 50 6.913873 TCTACAACCACAAGTAACAAACTC 57.086 37.500 0.00 0.00 37.50 3.01
50 51 6.238648 GCATCTACAACCACAAGTAACAAACT 60.239 38.462 0.00 0.00 41.49 2.66
51 52 5.912955 GCATCTACAACCACAAGTAACAAAC 59.087 40.000 0.00 0.00 0.00 2.93
52 53 5.009210 GGCATCTACAACCACAAGTAACAAA 59.991 40.000 0.00 0.00 0.00 2.83
53 54 4.517453 GGCATCTACAACCACAAGTAACAA 59.483 41.667 0.00 0.00 0.00 2.83
54 55 4.069304 GGCATCTACAACCACAAGTAACA 58.931 43.478 0.00 0.00 0.00 2.41
55 56 3.439129 GGGCATCTACAACCACAAGTAAC 59.561 47.826 0.00 0.00 0.00 2.50
56 57 3.329520 AGGGCATCTACAACCACAAGTAA 59.670 43.478 0.00 0.00 0.00 2.24
57 58 2.910319 AGGGCATCTACAACCACAAGTA 59.090 45.455 0.00 0.00 0.00 2.24
58 59 1.705186 AGGGCATCTACAACCACAAGT 59.295 47.619 0.00 0.00 0.00 3.16
59 60 2.496899 AGGGCATCTACAACCACAAG 57.503 50.000 0.00 0.00 0.00 3.16
60 61 2.238646 CCTAGGGCATCTACAACCACAA 59.761 50.000 0.00 0.00 0.00 3.33
61 62 1.837439 CCTAGGGCATCTACAACCACA 59.163 52.381 0.00 0.00 0.00 4.17
62 63 2.622064 CCTAGGGCATCTACAACCAC 57.378 55.000 0.00 0.00 0.00 4.16
74 75 1.734748 GTCTAGTGACGCCTAGGGC 59.265 63.158 11.72 1.76 46.75 5.19
81 82 1.507174 AGGCGAAGTCTAGTGACGC 59.493 57.895 14.05 14.05 46.45 5.19
116 118 6.688578 ACATATAGGTTCCTATAGTTGCACG 58.311 40.000 19.24 7.98 35.69 5.34
117 119 7.038941 AGGACATATAGGTTCCTATAGTTGCAC 60.039 40.741 19.24 11.95 35.69 4.57
118 120 7.016914 AGGACATATAGGTTCCTATAGTTGCA 58.983 38.462 19.24 2.98 35.69 4.08
119 121 7.483580 AGGACATATAGGTTCCTATAGTTGC 57.516 40.000 19.24 14.46 35.69 4.17
120 122 9.712305 CAAAGGACATATAGGTTCCTATAGTTG 57.288 37.037 19.24 16.23 35.69 3.16
121 123 8.376270 GCAAAGGACATATAGGTTCCTATAGTT 58.624 37.037 19.24 11.22 35.69 2.24
124 126 7.956315 AGAGCAAAGGACATATAGGTTCCTATA 59.044 37.037 17.52 17.52 36.37 1.31
126 128 6.042093 CAGAGCAAAGGACATATAGGTTCCTA 59.958 42.308 8.35 0.80 0.00 2.94
132 134 5.529060 GGAAACAGAGCAAAGGACATATAGG 59.471 44.000 0.00 0.00 0.00 2.57
173 175 0.107654 AGGAAGTCGTAGCATTGCCC 60.108 55.000 4.70 0.00 0.00 5.36
174 176 1.666189 GAAGGAAGTCGTAGCATTGCC 59.334 52.381 4.70 0.00 0.00 4.52
175 177 2.622436 AGAAGGAAGTCGTAGCATTGC 58.378 47.619 0.00 0.00 0.00 3.56
202 204 4.559153 CATTGCCCCAAAGTTACTGAAAG 58.441 43.478 0.00 0.00 42.29 2.62
224 226 2.089349 GCTAGCTATGCGCCGTAGC 61.089 63.158 25.71 25.71 46.01 3.58
225 227 0.803117 TAGCTAGCTATGCGCCGTAG 59.197 55.000 20.67 8.83 40.39 3.51
226 228 0.803117 CTAGCTAGCTATGCGCCGTA 59.197 55.000 24.36 1.22 40.39 4.02
227 229 1.581954 CTAGCTAGCTATGCGCCGT 59.418 57.895 24.36 0.00 40.39 5.68
228 230 1.803519 GCTAGCTAGCTATGCGCCG 60.804 63.158 33.71 12.78 45.62 6.46
229 231 4.177229 GCTAGCTAGCTATGCGCC 57.823 61.111 33.71 6.73 45.62 6.53
242 244 0.738975 TGTGCTACCGTGCTAGCTAG 59.261 55.000 16.84 16.84 40.02 3.42
270 272 9.237846 CGCTTTTTCTAGAAAAATGAGAGTTTT 57.762 29.630 32.87 0.00 45.69 2.43
271 273 7.379797 GCGCTTTTTCTAGAAAAATGAGAGTTT 59.620 33.333 32.87 0.00 45.69 2.66
272 274 6.858478 GCGCTTTTTCTAGAAAAATGAGAGTT 59.142 34.615 32.87 0.00 45.69 3.01
273 275 6.205658 AGCGCTTTTTCTAGAAAAATGAGAGT 59.794 34.615 32.87 18.31 45.69 3.24
275 277 6.560253 AGCGCTTTTTCTAGAAAAATGAGA 57.440 33.333 32.87 17.71 45.69 3.27
276 278 6.467364 GCTAGCGCTTTTTCTAGAAAAATGAG 59.533 38.462 32.87 27.37 45.69 2.90
277 279 6.149474 AGCTAGCGCTTTTTCTAGAAAAATGA 59.851 34.615 32.87 18.31 46.47 2.57
278 280 6.317857 AGCTAGCGCTTTTTCTAGAAAAATG 58.682 36.000 32.87 28.34 46.47 2.32
279 281 6.502136 AGCTAGCGCTTTTTCTAGAAAAAT 57.498 33.333 32.87 23.82 46.47 1.82
294 296 8.120465 TGTGATTTAAGTTAATAAAGCTAGCGC 58.880 33.333 9.55 0.00 33.48 5.92
295 297 9.422196 GTGTGATTTAAGTTAATAAAGCTAGCG 57.578 33.333 9.55 0.00 33.48 4.26
311 313 4.873827 GCGAGGGATGTAAGTGTGATTTAA 59.126 41.667 0.00 0.00 0.00 1.52
335 337 4.002906 ACTTTGATCAGGTAAGCGAACA 57.997 40.909 5.68 0.00 0.00 3.18
336 338 5.049680 TCAAACTTTGATCAGGTAAGCGAAC 60.050 40.000 5.68 0.00 34.08 3.95
337 339 5.060506 TCAAACTTTGATCAGGTAAGCGAA 58.939 37.500 5.68 0.00 34.08 4.70
338 340 4.637276 TCAAACTTTGATCAGGTAAGCGA 58.363 39.130 5.68 0.00 34.08 4.93
339 341 5.179368 TCTTCAAACTTTGATCAGGTAAGCG 59.821 40.000 5.03 0.00 39.84 4.68
340 342 6.374578 GTCTTCAAACTTTGATCAGGTAAGC 58.625 40.000 5.03 0.00 39.84 3.09
341 343 6.202954 ACGTCTTCAAACTTTGATCAGGTAAG 59.797 38.462 5.03 4.42 39.84 2.34
342 344 6.018262 CACGTCTTCAAACTTTGATCAGGTAA 60.018 38.462 5.03 0.00 39.84 2.85
343 345 5.465390 CACGTCTTCAAACTTTGATCAGGTA 59.535 40.000 5.03 0.00 39.84 3.08
345 347 4.776743 CACGTCTTCAAACTTTGATCAGG 58.223 43.478 5.03 3.91 39.84 3.86
346 348 4.214437 GCACGTCTTCAAACTTTGATCAG 58.786 43.478 5.03 1.55 39.84 2.90
349 3549 2.612212 ACGCACGTCTTCAAACTTTGAT 59.388 40.909 5.03 0.00 39.84 2.57
371 3571 8.754080 GGTATATCTATCCATAGAGCAAGTGTT 58.246 37.037 2.82 0.00 42.20 3.32
384 3584 6.994421 TGCTTGTTCTGGTATATCTATCCA 57.006 37.500 0.00 0.00 0.00 3.41
388 3588 9.143155 TCTTGTATGCTTGTTCTGGTATATCTA 57.857 33.333 0.00 0.00 0.00 1.98
390 3590 8.662781 TTCTTGTATGCTTGTTCTGGTATATC 57.337 34.615 0.00 0.00 0.00 1.63
392 3592 8.856153 TTTTCTTGTATGCTTGTTCTGGTATA 57.144 30.769 0.00 0.00 0.00 1.47
393 3593 7.665559 TCTTTTCTTGTATGCTTGTTCTGGTAT 59.334 33.333 0.00 0.00 0.00 2.73
394 3594 6.995686 TCTTTTCTTGTATGCTTGTTCTGGTA 59.004 34.615 0.00 0.00 0.00 3.25
395 3595 5.827797 TCTTTTCTTGTATGCTTGTTCTGGT 59.172 36.000 0.00 0.00 0.00 4.00
396 3596 6.145535 GTCTTTTCTTGTATGCTTGTTCTGG 58.854 40.000 0.00 0.00 0.00 3.86
406 3617 3.119849 CCCGGCTTGTCTTTTCTTGTATG 60.120 47.826 0.00 0.00 0.00 2.39
423 3636 3.825611 ATGCATTGCGTTCCCGGC 61.826 61.111 3.84 0.00 33.68 6.13
425 3638 2.102749 CCATGCATTGCGTTCCCG 59.897 61.111 0.00 0.00 37.07 5.14
506 3807 0.948678 TTGTTGGTACGGCTTCTTGC 59.051 50.000 0.00 0.00 41.94 4.01
511 3812 1.589803 GACTGTTGTTGGTACGGCTT 58.410 50.000 0.00 0.00 0.00 4.35
537 3838 1.972872 CGCAGGGCTCCTCAAAATAT 58.027 50.000 0.00 0.00 0.00 1.28
556 3859 4.962122 CCACACACGCAACGCAGC 62.962 66.667 0.00 0.00 0.00 5.25
663 3967 2.315176 CAGGGTCCACATTTTGGTTCA 58.685 47.619 0.00 0.00 46.97 3.18
739 4067 0.842635 AGGGACTGAAGATGATGGGC 59.157 55.000 0.00 0.00 37.18 5.36
767 4106 2.224942 CGAAATTTATACCCCCTCCCCC 60.225 54.545 0.00 0.00 0.00 5.40
939 4279 1.222113 GGGGAGCGGAAAAGGAGAG 59.778 63.158 0.00 0.00 0.00 3.20
971 4311 4.803426 CCACGAGCAGCCGGAGAC 62.803 72.222 5.05 0.00 0.00 3.36
1153 4495 1.307430 GGAAGGAAGGGGAGGAGCT 60.307 63.158 0.00 0.00 0.00 4.09
1154 4496 0.916845 AAGGAAGGAAGGGGAGGAGC 60.917 60.000 0.00 0.00 0.00 4.70
1155 4497 1.562008 GAAAGGAAGGAAGGGGAGGAG 59.438 57.143 0.00 0.00 0.00 3.69
1156 4498 1.670059 GAAAGGAAGGAAGGGGAGGA 58.330 55.000 0.00 0.00 0.00 3.71
1158 4500 1.562008 GAGGAAAGGAAGGAAGGGGAG 59.438 57.143 0.00 0.00 0.00 4.30
1159 4501 1.670059 GAGGAAAGGAAGGAAGGGGA 58.330 55.000 0.00 0.00 0.00 4.81
1160 4502 0.626382 GGAGGAAAGGAAGGAAGGGG 59.374 60.000 0.00 0.00 0.00 4.79
1161 4503 1.372501 TGGAGGAAAGGAAGGAAGGG 58.627 55.000 0.00 0.00 0.00 3.95
1162 4504 2.092158 GGATGGAGGAAAGGAAGGAAGG 60.092 54.545 0.00 0.00 0.00 3.46
1163 4505 2.578021 TGGATGGAGGAAAGGAAGGAAG 59.422 50.000 0.00 0.00 0.00 3.46
1164 4506 2.642982 TGGATGGAGGAAAGGAAGGAA 58.357 47.619 0.00 0.00 0.00 3.36
1165 4507 2.359376 TGGATGGAGGAAAGGAAGGA 57.641 50.000 0.00 0.00 0.00 3.36
1176 4518 3.619242 CGGGATGAAGATGATGGATGGAG 60.619 52.174 0.00 0.00 0.00 3.86
1196 4539 2.760159 CCATGGTTTACAGGCGCGG 61.760 63.158 8.83 0.00 0.00 6.46
1231 4579 1.021390 GGAGTGCGTCAGGACATTGG 61.021 60.000 0.00 0.00 41.52 3.16
1235 4587 1.407656 AAAGGGAGTGCGTCAGGACA 61.408 55.000 0.00 0.00 41.52 4.02
1243 4595 1.737793 GTAATCACCAAAGGGAGTGCG 59.262 52.381 0.00 0.00 38.05 5.34
1250 4610 7.337942 AGCAAAGAGATTAGTAATCACCAAAGG 59.662 37.037 22.00 8.48 40.42 3.11
1257 4617 5.907207 AGCGAGCAAAGAGATTAGTAATCA 58.093 37.500 22.00 0.00 40.42 2.57
1262 4622 3.194542 ACAGAGCGAGCAAAGAGATTAGT 59.805 43.478 0.00 0.00 0.00 2.24
1414 4794 0.461961 TGCAAGAAACCAAAACCCCG 59.538 50.000 0.00 0.00 0.00 5.73
1460 4840 2.174349 GCCGCGAAGTTGCAGAAG 59.826 61.111 8.23 0.00 34.15 2.85
1659 5042 7.050970 TGATCTTCGCCATTAACAGTAGTAT 57.949 36.000 0.00 0.00 0.00 2.12
1661 5044 5.339008 TGATCTTCGCCATTAACAGTAGT 57.661 39.130 0.00 0.00 0.00 2.73
1663 5046 5.580691 CAGTTGATCTTCGCCATTAACAGTA 59.419 40.000 0.00 0.00 0.00 2.74
1664 5047 4.393062 CAGTTGATCTTCGCCATTAACAGT 59.607 41.667 0.00 0.00 0.00 3.55
1665 5048 4.201851 CCAGTTGATCTTCGCCATTAACAG 60.202 45.833 0.00 0.00 0.00 3.16
1666 5049 3.689161 CCAGTTGATCTTCGCCATTAACA 59.311 43.478 0.00 0.00 0.00 2.41
1667 5050 3.487544 GCCAGTTGATCTTCGCCATTAAC 60.488 47.826 0.00 0.00 0.00 2.01
1668 5051 2.682856 GCCAGTTGATCTTCGCCATTAA 59.317 45.455 0.00 0.00 0.00 1.40
1669 5052 2.092968 AGCCAGTTGATCTTCGCCATTA 60.093 45.455 0.00 0.00 0.00 1.90
1670 5053 1.098050 GCCAGTTGATCTTCGCCATT 58.902 50.000 0.00 0.00 0.00 3.16
1671 5054 0.254178 AGCCAGTTGATCTTCGCCAT 59.746 50.000 0.00 0.00 0.00 4.40
1672 5055 0.036732 AAGCCAGTTGATCTTCGCCA 59.963 50.000 0.00 0.00 0.00 5.69
1673 5056 2.024176 TAAGCCAGTTGATCTTCGCC 57.976 50.000 0.00 0.00 0.00 5.54
1674 5057 2.289002 CCATAAGCCAGTTGATCTTCGC 59.711 50.000 0.00 0.00 0.00 4.70
1675 5058 3.535561 ACCATAAGCCAGTTGATCTTCG 58.464 45.455 0.00 0.00 0.00 3.79
1676 5059 4.517285 TGACCATAAGCCAGTTGATCTTC 58.483 43.478 0.00 0.00 0.00 2.87
1682 5065 4.818546 CCTAATCTGACCATAAGCCAGTTG 59.181 45.833 0.00 0.00 0.00 3.16
1695 5078 3.129871 CTGCTTAGCTGCCTAATCTGAC 58.870 50.000 5.60 0.00 33.31 3.51
1706 5089 1.953138 CCGATCGCCTGCTTAGCTG 60.953 63.158 10.32 4.76 0.00 4.24
1734 5124 1.028330 AACCATCATCCAGCAGCACG 61.028 55.000 0.00 0.00 0.00 5.34
1760 5150 0.611714 CAGCCGGGTTAGTGGTTACT 59.388 55.000 1.64 0.00 40.99 2.24
1761 5151 1.022982 GCAGCCGGGTTAGTGGTTAC 61.023 60.000 1.64 0.00 0.00 2.50
1762 5152 1.196104 AGCAGCCGGGTTAGTGGTTA 61.196 55.000 1.64 0.00 0.00 2.85
1763 5153 2.033602 GCAGCCGGGTTAGTGGTT 59.966 61.111 1.64 0.00 0.00 3.67
1764 5154 2.465055 GAAGCAGCCGGGTTAGTGGT 62.465 60.000 1.64 0.00 37.33 4.16
1765 5155 1.745489 GAAGCAGCCGGGTTAGTGG 60.745 63.158 1.64 0.00 37.33 4.00
1766 5156 0.741221 GAGAAGCAGCCGGGTTAGTG 60.741 60.000 1.64 0.00 37.33 2.74
1774 5164 0.795085 CAAGAACAGAGAAGCAGCCG 59.205 55.000 0.00 0.00 0.00 5.52
1866 5260 1.363443 GAGGCTGATCTCCTGCTCG 59.637 63.158 11.10 0.00 39.38 5.03
1948 5343 4.683400 GCATTAGCAAGGTAGTAAGCTGGA 60.683 45.833 0.00 0.00 41.58 3.86
1998 5405 2.622942 CACGGGGTCAATAATTCCATGG 59.377 50.000 4.97 4.97 0.00 3.66
1999 5406 2.034558 GCACGGGGTCAATAATTCCATG 59.965 50.000 0.00 0.00 0.00 3.66
2000 5407 2.306847 GCACGGGGTCAATAATTCCAT 58.693 47.619 0.00 0.00 0.00 3.41
2001 5408 1.004862 TGCACGGGGTCAATAATTCCA 59.995 47.619 0.00 0.00 0.00 3.53
2002 5409 1.676006 CTGCACGGGGTCAATAATTCC 59.324 52.381 0.00 0.00 0.00 3.01
2003 5410 1.065551 GCTGCACGGGGTCAATAATTC 59.934 52.381 0.00 0.00 0.00 2.17
2016 5423 3.414700 GTCCTCGGTTGCTGCACG 61.415 66.667 0.00 3.73 0.00 5.34
2124 5532 2.619941 GATGATGGAGCAGGCAGGCA 62.620 60.000 0.00 0.00 35.83 4.75
2125 5533 1.897615 GATGATGGAGCAGGCAGGC 60.898 63.158 0.00 0.00 0.00 4.85
2126 5534 1.228184 GGATGATGGAGCAGGCAGG 60.228 63.158 0.00 0.00 0.00 4.85
2127 5535 0.250381 GAGGATGATGGAGCAGGCAG 60.250 60.000 0.00 0.00 0.00 4.85
2154 5562 2.178890 GGCAGCAGAGAAGGCATCG 61.179 63.158 0.00 0.00 0.00 3.84
2221 5643 4.537015 AGAAAAGAAAGAAAACGATGGCG 58.463 39.130 0.00 0.00 44.79 5.69
2236 5658 9.664332 CATGAGAGAAAGAAATAGGAGAAAAGA 57.336 33.333 0.00 0.00 0.00 2.52
2237 5659 8.397148 GCATGAGAGAAAGAAATAGGAGAAAAG 58.603 37.037 0.00 0.00 0.00 2.27
2239 5661 7.397221 TGCATGAGAGAAAGAAATAGGAGAAA 58.603 34.615 0.00 0.00 0.00 2.52
2242 5682 7.716123 AGAATGCATGAGAGAAAGAAATAGGAG 59.284 37.037 0.00 0.00 0.00 3.69
2262 5702 2.467826 GCGCCACAGAGGAGAATGC 61.468 63.158 0.00 0.00 40.01 3.56
2264 5704 2.185350 CGCGCCACAGAGGAGAAT 59.815 61.111 0.00 0.00 40.01 2.40
2266 5706 4.056125 CACGCGCCACAGAGGAGA 62.056 66.667 5.73 0.00 40.01 3.71
2374 5820 1.641677 GCAGCGGGCTATAAACACG 59.358 57.895 0.00 0.00 40.25 4.49
2394 5840 0.309922 TAGAATAAGACCGGCGAGCG 59.690 55.000 9.30 0.00 0.00 5.03
2518 5964 0.999406 CTCGTGCGACCAAATACCAG 59.001 55.000 0.00 0.00 0.00 4.00
2577 6023 1.608590 ACCGATCAAACCAGCAACAAG 59.391 47.619 0.00 0.00 0.00 3.16
2578 6024 1.606668 GACCGATCAAACCAGCAACAA 59.393 47.619 0.00 0.00 0.00 2.83
2579 6025 1.234821 GACCGATCAAACCAGCAACA 58.765 50.000 0.00 0.00 0.00 3.33
2580 6026 0.165944 CGACCGATCAAACCAGCAAC 59.834 55.000 0.00 0.00 0.00 4.17
2600 6047 3.626680 CTGCACGACCACGATCGGT 62.627 63.158 20.98 8.52 46.56 4.69
2601 6048 2.880879 CTGCACGACCACGATCGG 60.881 66.667 20.98 8.32 46.56 4.18
3048 6498 1.327690 TAGGACGACATGGGAGTGGC 61.328 60.000 0.00 0.00 0.00 5.01
3154 6604 1.126846 GAAGCCATCAACACGAGAACG 59.873 52.381 0.00 0.00 45.75 3.95
3160 6610 2.015736 AGCTAGAAGCCATCAACACG 57.984 50.000 0.00 0.00 43.77 4.49
3161 6611 3.868077 CACTAGCTAGAAGCCATCAACAC 59.132 47.826 27.45 0.00 43.77 3.32
3162 6612 3.515502 ACACTAGCTAGAAGCCATCAACA 59.484 43.478 27.45 0.00 43.77 3.33
3163 6613 4.130286 ACACTAGCTAGAAGCCATCAAC 57.870 45.455 27.45 0.00 43.77 3.18
3164 6614 5.932619 TTACACTAGCTAGAAGCCATCAA 57.067 39.130 27.45 6.49 43.77 2.57
3165 6615 5.932619 TTTACACTAGCTAGAAGCCATCA 57.067 39.130 27.45 0.64 43.77 3.07
3166 6616 6.986817 TGATTTTACACTAGCTAGAAGCCATC 59.013 38.462 27.45 18.19 43.77 3.51
3167 6617 6.889198 TGATTTTACACTAGCTAGAAGCCAT 58.111 36.000 27.45 11.03 43.77 4.40
3168 6618 6.294361 TGATTTTACACTAGCTAGAAGCCA 57.706 37.500 27.45 9.60 43.77 4.75
3169 6619 7.793927 ATTGATTTTACACTAGCTAGAAGCC 57.206 36.000 27.45 7.38 43.77 4.35
3234 6684 2.092323 GGGTTAAGCAGTCCATGGTTC 58.908 52.381 12.58 6.61 46.55 3.62
3240 6693 2.109128 TGATTTGGGGTTAAGCAGTCCA 59.891 45.455 7.03 2.02 0.00 4.02
3283 6736 2.263077 GATATAATCAGCGGCGTGAGG 58.737 52.381 9.37 0.00 0.00 3.86
3285 6738 1.268625 ACGATATAATCAGCGGCGTGA 59.731 47.619 9.37 11.62 0.00 4.35
3286 6739 1.698165 ACGATATAATCAGCGGCGTG 58.302 50.000 9.37 5.92 0.00 5.34
3287 6740 2.058798 CAACGATATAATCAGCGGCGT 58.941 47.619 9.37 0.00 0.00 5.68
3288 6741 1.390123 CCAACGATATAATCAGCGGCG 59.610 52.381 0.51 0.51 0.00 6.46
3289 6742 2.412089 GTCCAACGATATAATCAGCGGC 59.588 50.000 0.00 0.00 0.00 6.53
3290 6743 3.914312 AGTCCAACGATATAATCAGCGG 58.086 45.455 0.00 0.00 0.00 5.52
3292 6745 6.870965 AGATCAAGTCCAACGATATAATCAGC 59.129 38.462 0.00 0.00 0.00 4.26
3293 6746 7.330454 CCAGATCAAGTCCAACGATATAATCAG 59.670 40.741 0.00 0.00 0.00 2.90
3294 6747 7.154656 CCAGATCAAGTCCAACGATATAATCA 58.845 38.462 0.00 0.00 0.00 2.57
3295 6748 6.091441 GCCAGATCAAGTCCAACGATATAATC 59.909 42.308 0.00 0.00 0.00 1.75
3296 6749 5.934625 GCCAGATCAAGTCCAACGATATAAT 59.065 40.000 0.00 0.00 0.00 1.28
3297 6750 5.297547 GCCAGATCAAGTCCAACGATATAA 58.702 41.667 0.00 0.00 0.00 0.98
3298 6751 4.262463 GGCCAGATCAAGTCCAACGATATA 60.262 45.833 0.00 0.00 0.00 0.86
3299 6752 3.495100 GGCCAGATCAAGTCCAACGATAT 60.495 47.826 0.00 0.00 0.00 1.63
3300 6753 2.158957 GGCCAGATCAAGTCCAACGATA 60.159 50.000 0.00 0.00 0.00 2.92
3301 6754 1.407437 GGCCAGATCAAGTCCAACGAT 60.407 52.381 0.00 0.00 0.00 3.73
3302 6755 0.036388 GGCCAGATCAAGTCCAACGA 60.036 55.000 0.00 0.00 0.00 3.85
3306 6759 0.535335 GTACGGCCAGATCAAGTCCA 59.465 55.000 2.24 0.00 0.00 4.02
3330 6785 7.058023 TGGTAACTGTTACTCACATTGTACT 57.942 36.000 25.04 0.00 36.39 2.73
3338 6794 4.620184 CGCTACTTGGTAACTGTTACTCAC 59.380 45.833 25.04 12.74 36.39 3.51
3339 6795 4.321452 CCGCTACTTGGTAACTGTTACTCA 60.321 45.833 25.04 19.13 36.39 3.41
3340 6796 4.171754 CCGCTACTTGGTAACTGTTACTC 58.828 47.826 25.04 17.24 36.39 2.59
3341 6797 3.575687 ACCGCTACTTGGTAACTGTTACT 59.424 43.478 25.04 11.68 38.15 2.24
3349 6805 0.393448 TGCACACCGCTACTTGGTAA 59.607 50.000 0.00 0.00 43.06 2.85
3353 6809 1.135315 GCATGCACACCGCTACTTG 59.865 57.895 14.21 0.00 43.06 3.16
3399 6855 1.069432 CGCATCTCATAACAGGCATGC 60.069 52.381 9.90 9.90 34.54 4.06
3418 6874 1.568606 CTCAGGTGTCATGCATCTCG 58.431 55.000 0.00 0.00 36.14 4.04
3440 6896 2.176546 CATTGCCGTGTCCTTGCG 59.823 61.111 0.00 0.00 0.00 4.85
3603 7059 1.452145 CCTAGCTGAGGTCGAGGAGC 61.452 65.000 0.00 0.00 40.98 4.70
3625 7081 4.755629 TCAAAGATAGTACTCGAGGATCCG 59.244 45.833 18.41 0.00 0.00 4.18
3626 7082 6.827586 ATCAAAGATAGTACTCGAGGATCC 57.172 41.667 18.41 2.48 0.00 3.36
3627 7083 8.106247 AGAATCAAAGATAGTACTCGAGGATC 57.894 38.462 18.41 13.06 0.00 3.36
3628 7084 8.356657 CAAGAATCAAAGATAGTACTCGAGGAT 58.643 37.037 18.41 4.23 0.00 3.24
3629 7085 7.339721 ACAAGAATCAAAGATAGTACTCGAGGA 59.660 37.037 18.41 4.89 0.00 3.71
3630 7086 7.433719 CACAAGAATCAAAGATAGTACTCGAGG 59.566 40.741 18.41 0.00 0.00 4.63
3631 7087 7.971168 ACACAAGAATCAAAGATAGTACTCGAG 59.029 37.037 11.84 11.84 0.00 4.04
3660 7127 3.682292 ATTTCACCCGAGCCCGAGC 62.682 63.158 0.00 0.00 38.22 5.03
3667 7134 3.500680 TCTTCGGAAAAATTTCACCCGAG 59.499 43.478 20.27 16.28 38.92 4.63
3699 7166 2.658593 CTTATGACCGCGCCTCCG 60.659 66.667 0.00 0.00 37.57 4.63
3797 7276 0.465460 TGCAGGAACCCACAACAGTC 60.465 55.000 0.00 0.00 0.00 3.51
3801 7280 0.179018 ACTCTGCAGGAACCCACAAC 60.179 55.000 15.13 0.00 0.00 3.32
3895 7382 3.136123 TACGTCCTCTTCCCGCCG 61.136 66.667 0.00 0.00 0.00 6.46
3896 7383 2.493501 GTACGTCCTCTTCCCGCC 59.506 66.667 0.00 0.00 0.00 6.13
3949 7442 1.010350 GCATGCATTTCCTCGCTCG 60.010 57.895 14.21 0.00 0.00 5.03
4011 7504 1.523938 GATCCGTTAGTGGCAGGGC 60.524 63.158 0.00 0.00 0.00 5.19
4078 7571 0.737715 CTACAGTCTCGGCAACAGCC 60.738 60.000 0.00 0.00 45.19 4.85
4079 7572 0.243907 TCTACAGTCTCGGCAACAGC 59.756 55.000 0.00 0.00 0.00 4.40
4080 7573 1.135257 CCTCTACAGTCTCGGCAACAG 60.135 57.143 0.00 0.00 0.00 3.16
4081 7574 0.888619 CCTCTACAGTCTCGGCAACA 59.111 55.000 0.00 0.00 0.00 3.33
4082 7575 0.173708 CCCTCTACAGTCTCGGCAAC 59.826 60.000 0.00 0.00 0.00 4.17
4083 7576 1.605058 GCCCTCTACAGTCTCGGCAA 61.605 60.000 0.00 0.00 36.38 4.52
4084 7577 2.052690 GCCCTCTACAGTCTCGGCA 61.053 63.158 0.00 0.00 36.38 5.69
4085 7578 1.730451 GAGCCCTCTACAGTCTCGGC 61.730 65.000 0.00 0.00 36.62 5.54
4086 7579 0.394488 TGAGCCCTCTACAGTCTCGG 60.394 60.000 0.00 0.00 0.00 4.63
4087 7580 1.021202 CTGAGCCCTCTACAGTCTCG 58.979 60.000 0.00 0.00 0.00 4.04
4088 7581 2.297701 CTCTGAGCCCTCTACAGTCTC 58.702 57.143 0.00 0.00 33.93 3.36
4089 7582 1.064017 CCTCTGAGCCCTCTACAGTCT 60.064 57.143 0.00 0.00 33.93 3.24
4090 7583 1.398692 CCTCTGAGCCCTCTACAGTC 58.601 60.000 0.00 0.00 33.93 3.51
4091 7584 0.032615 CCCTCTGAGCCCTCTACAGT 60.033 60.000 0.00 0.00 33.93 3.55
4092 7585 2.819477 CCCTCTGAGCCCTCTACAG 58.181 63.158 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.