Multiple sequence alignment - TraesCS7A01G190600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G190600 chr7A 100.000 4520 0 0 1 4520 148414106 148418625 0.000000e+00 8347.0
1 TraesCS7A01G190600 chr7A 98.824 255 3 0 1 255 70781736 70781482 5.330000e-124 455.0
2 TraesCS7A01G190600 chr7A 98.047 256 4 1 1 255 101281887 101282142 1.150000e-120 444.0
3 TraesCS7A01G190600 chr7A 98.039 255 5 0 1 255 540069966 540070220 1.150000e-120 444.0
4 TraesCS7A01G190600 chr7A 94.030 134 6 2 4389 4520 62177971 62177838 7.670000e-48 202.0
5 TraesCS7A01G190600 chr7A 89.262 149 13 3 2338 2485 681013372 681013226 2.780000e-42 183.0
6 TraesCS7A01G190600 chr7A 97.561 41 1 0 1675 1715 637052827 637052787 2.260000e-08 71.3
7 TraesCS7A01G190600 chr7A 90.196 51 5 0 2008 2058 681013794 681013744 2.920000e-07 67.6
8 TraesCS7A01G190600 chr7D 94.275 3738 125 38 256 3961 146862172 146865852 0.000000e+00 5635.0
9 TraesCS7A01G190600 chr7D 91.232 422 23 3 3990 4397 146865949 146866370 3.050000e-156 562.0
10 TraesCS7A01G190600 chr7D 91.781 146 9 3 4378 4520 152543057 152542912 2.760000e-47 200.0
11 TraesCS7A01G190600 chr7D 89.933 149 12 3 2338 2485 589514278 589514424 5.970000e-44 189.0
12 TraesCS7A01G190600 chr7B 92.882 3793 139 57 256 3981 109701645 109705373 0.000000e+00 5387.0
13 TraesCS7A01G190600 chr7B 91.943 422 19 4 3990 4397 109705462 109705882 1.090000e-160 577.0
14 TraesCS7A01G190600 chr7B 89.933 149 12 3 2338 2485 664108597 664108743 5.970000e-44 189.0
15 TraesCS7A01G190600 chr7B 97.619 42 1 0 2008 2049 664108178 664108219 6.270000e-09 73.1
16 TraesCS7A01G190600 chr6A 88.382 1119 103 12 995 2104 543394799 543395899 0.000000e+00 1321.0
17 TraesCS7A01G190600 chr6A 98.438 256 4 0 1 256 168394787 168394532 6.900000e-123 451.0
18 TraesCS7A01G190600 chr6A 98.814 253 3 0 1 253 384760328 384760580 6.900000e-123 451.0
19 TraesCS7A01G190600 chr6A 98.047 256 4 1 1 255 144224902 144225157 1.150000e-120 444.0
20 TraesCS7A01G190600 chr6A 76.966 725 108 48 2252 2940 543396053 543396754 4.300000e-95 359.0
21 TraesCS7A01G190600 chr6A 97.674 86 2 0 3234 3319 543396943 543397028 1.010000e-31 148.0
22 TraesCS7A01G190600 chr6A 93.243 74 5 0 3449 3522 543397097 543397170 4.780000e-20 110.0
23 TraesCS7A01G190600 chr6D 88.068 1123 102 17 994 2104 397082337 397083439 0.000000e+00 1303.0
24 TraesCS7A01G190600 chr6D 76.913 732 107 39 2252 2940 397083590 397084302 4.300000e-95 359.0
25 TraesCS7A01G190600 chr6D 98.837 86 1 0 3234 3319 397084502 397084587 2.180000e-33 154.0
26 TraesCS7A01G190600 chr6D 93.243 74 5 0 3449 3522 397084665 397084738 4.780000e-20 110.0
27 TraesCS7A01G190600 chr6B 87.555 1133 111 15 982 2104 593711916 593713028 0.000000e+00 1284.0
28 TraesCS7A01G190600 chr6B 77.018 731 109 43 2252 2940 593713179 593713892 9.240000e-97 364.0
29 TraesCS7A01G190600 chr6B 95.349 86 4 0 3234 3319 593714083 593714168 2.190000e-28 137.0
30 TraesCS7A01G190600 chr6B 92.405 79 6 0 3449 3527 593714233 593714311 3.700000e-21 113.0
31 TraesCS7A01G190600 chr6B 97.561 41 1 0 1675 1715 142988907 142988867 2.260000e-08 71.3
32 TraesCS7A01G190600 chr4B 82.294 802 118 17 1001 1784 170927034 170927829 0.000000e+00 673.0
33 TraesCS7A01G190600 chr4D 82.170 802 119 19 1001 1784 109469594 109470389 0.000000e+00 667.0
34 TraesCS7A01G190600 chr4D 96.063 127 4 1 4395 4520 11504356 11504230 5.930000e-49 206.0
35 TraesCS7A01G190600 chr4D 96.063 127 4 1 4395 4520 347514805 347514679 5.930000e-49 206.0
36 TraesCS7A01G190600 chr4A 81.818 803 120 20 1001 1784 466941639 466940844 0.000000e+00 651.0
37 TraesCS7A01G190600 chr4A 96.825 126 3 1 4396 4520 541887014 541887139 4.580000e-50 209.0
38 TraesCS7A01G190600 chr1A 98.047 256 4 1 1 255 573286739 573286994 1.150000e-120 444.0
39 TraesCS7A01G190600 chr1A 95.489 133 5 1 4389 4520 65260215 65260347 1.270000e-50 211.0
40 TraesCS7A01G190600 chr3D 79.658 644 108 18 994 1630 302850186 302849559 4.150000e-120 442.0
41 TraesCS7A01G190600 chr3D 95.420 131 5 1 4391 4520 71518890 71518760 1.650000e-49 207.0
42 TraesCS7A01G190600 chr3D 96.063 127 4 1 4395 4520 523192594 523192468 5.930000e-49 206.0
43 TraesCS7A01G190600 chr5A 96.604 265 9 0 1 265 485920578 485920842 1.490000e-119 440.0
44 TraesCS7A01G190600 chr3A 96.947 262 8 0 1 262 555811780 555812041 1.490000e-119 440.0
45 TraesCS7A01G190600 chr3A 79.795 584 95 19 994 1558 432040436 432041015 1.960000e-108 403.0
46 TraesCS7A01G190600 chr3A 91.667 48 4 0 2008 2055 432041390 432041437 2.920000e-07 67.6
47 TraesCS7A01G190600 chr5D 94.737 133 5 2 4389 4520 241278057 241278188 5.930000e-49 206.0
48 TraesCS7A01G190600 chr3B 90.984 122 11 0 2364 2485 418661396 418661517 1.010000e-36 165.0
49 TraesCS7A01G190600 chr5B 97.561 41 1 0 1675 1715 447194713 447194753 2.260000e-08 71.3
50 TraesCS7A01G190600 chr1B 97.561 41 1 0 1675 1715 269297763 269297723 2.260000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G190600 chr7A 148414106 148418625 4519 False 8347.0 8347 100.00000 1 4520 1 chr7A.!!$F2 4519
1 TraesCS7A01G190600 chr7D 146862172 146866370 4198 False 3098.5 5635 92.75350 256 4397 2 chr7D.!!$F2 4141
2 TraesCS7A01G190600 chr7B 109701645 109705882 4237 False 2982.0 5387 92.41250 256 4397 2 chr7B.!!$F1 4141
3 TraesCS7A01G190600 chr6A 543394799 543397170 2371 False 484.5 1321 89.06625 995 3522 4 chr6A.!!$F3 2527
4 TraesCS7A01G190600 chr6D 397082337 397084738 2401 False 481.5 1303 89.26525 994 3522 4 chr6D.!!$F1 2528
5 TraesCS7A01G190600 chr6B 593711916 593714311 2395 False 474.5 1284 88.08175 982 3527 4 chr6B.!!$F1 2545
6 TraesCS7A01G190600 chr4B 170927034 170927829 795 False 673.0 673 82.29400 1001 1784 1 chr4B.!!$F1 783
7 TraesCS7A01G190600 chr4D 109469594 109470389 795 False 667.0 667 82.17000 1001 1784 1 chr4D.!!$F1 783
8 TraesCS7A01G190600 chr4A 466940844 466941639 795 True 651.0 651 81.81800 1001 1784 1 chr4A.!!$R1 783
9 TraesCS7A01G190600 chr3D 302849559 302850186 627 True 442.0 442 79.65800 994 1630 1 chr3D.!!$R2 636
10 TraesCS7A01G190600 chr3A 432040436 432041437 1001 False 235.3 403 85.73100 994 2055 2 chr3A.!!$F2 1061

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.0 0.00 0.00 0.00 4.69 F
198 199 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
218 219 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.0 15.81 0.00 43.20 4.57 F
411 412 0.463833 GACAACTTCCCGGCCATAGG 60.464 60.0 2.24 0.00 0.00 2.57 F
2202 2303 0.027586 GTTAATTAGTGCCCGCGCTG 59.972 55.0 12.89 0.00 37.92 5.18 F
3020 3217 0.956633 CAGGCTTGCACACTGACAAT 59.043 50.0 5.74 0.00 34.21 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1904 1992 0.884704 CTGCCCGTACTTGCTGTTGT 60.885 55.0 5.28 0.00 0.0 3.32 R
2153 2250 0.824109 TGGCTAGGACAGTCGAATGG 59.176 55.0 18.14 0.00 0.0 3.16 R
2154 2251 2.898729 ATGGCTAGGACAGTCGAATG 57.101 50.0 11.98 11.98 0.0 2.67 R
2227 2329 2.033407 GTCCGCTGTGATTGATTGATCG 60.033 50.0 0.00 0.00 0.0 3.69 R
3445 3660 0.376152 CCGAAGATGACACTGCATGC 59.624 55.0 11.82 11.82 0.0 4.06 R
4417 4755 0.101399 CACGCGGATAGAGAAGCACT 59.899 55.0 12.47 0.00 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.144703 GGAACTCCTCCCCGACGC 62.145 72.222 0.00 0.00 38.44 5.19
18 19 3.069318 GAACTCCTCCCCGACGCT 61.069 66.667 0.00 0.00 0.00 5.07
19 20 2.603776 AACTCCTCCCCGACGCTT 60.604 61.111 0.00 0.00 0.00 4.68
20 21 2.168666 GAACTCCTCCCCGACGCTTT 62.169 60.000 0.00 0.00 0.00 3.51
21 22 2.125512 CTCCTCCCCGACGCTTTG 60.126 66.667 0.00 0.00 0.00 2.77
22 23 4.388499 TCCTCCCCGACGCTTTGC 62.388 66.667 0.00 0.00 0.00 3.68
23 24 4.394712 CCTCCCCGACGCTTTGCT 62.395 66.667 0.00 0.00 0.00 3.91
24 25 3.121030 CTCCCCGACGCTTTGCTG 61.121 66.667 0.00 0.00 0.00 4.41
25 26 4.697756 TCCCCGACGCTTTGCTGG 62.698 66.667 0.00 0.00 0.00 4.85
26 27 4.697756 CCCCGACGCTTTGCTGGA 62.698 66.667 0.00 0.00 0.00 3.86
27 28 2.436646 CCCGACGCTTTGCTGGAT 60.437 61.111 0.00 0.00 0.00 3.41
28 29 2.464459 CCCGACGCTTTGCTGGATC 61.464 63.158 0.00 0.00 0.00 3.36
29 30 2.697425 CGACGCTTTGCTGGATCG 59.303 61.111 0.00 0.00 0.00 3.69
30 31 2.802667 CGACGCTTTGCTGGATCGG 61.803 63.158 0.00 0.00 0.00 4.18
31 32 1.447838 GACGCTTTGCTGGATCGGA 60.448 57.895 0.00 0.00 0.00 4.55
32 33 1.424493 GACGCTTTGCTGGATCGGAG 61.424 60.000 0.00 0.00 0.00 4.63
33 34 2.817423 CGCTTTGCTGGATCGGAGC 61.817 63.158 8.14 8.14 36.95 4.70
34 35 2.476320 GCTTTGCTGGATCGGAGCC 61.476 63.158 5.08 5.08 35.43 4.70
35 36 1.821332 CTTTGCTGGATCGGAGCCC 60.821 63.158 10.23 0.92 35.43 5.19
47 48 3.234730 GAGCCCGGGGATCGTCAT 61.235 66.667 25.28 0.00 37.11 3.06
48 49 3.227792 GAGCCCGGGGATCGTCATC 62.228 68.421 25.28 0.89 37.11 2.92
49 50 4.664677 GCCCGGGGATCGTCATCG 62.665 72.222 25.28 0.00 37.11 3.84
58 59 4.765611 TCGTCATCGAGCTGAACG 57.234 55.556 0.00 0.00 41.35 3.95
59 60 1.873863 TCGTCATCGAGCTGAACGT 59.126 52.632 0.00 0.00 41.35 3.99
60 61 0.454452 TCGTCATCGAGCTGAACGTG 60.454 55.000 0.00 0.00 41.35 4.49
61 62 0.729478 CGTCATCGAGCTGAACGTGT 60.729 55.000 0.00 0.00 39.71 4.49
62 63 0.710567 GTCATCGAGCTGAACGTGTG 59.289 55.000 0.00 0.00 0.00 3.82
63 64 1.008875 TCATCGAGCTGAACGTGTGC 61.009 55.000 0.00 0.00 0.00 4.57
64 65 1.010935 CATCGAGCTGAACGTGTGCT 61.011 55.000 9.46 9.46 40.02 4.40
65 66 0.526211 ATCGAGCTGAACGTGTGCTA 59.474 50.000 9.63 0.00 37.16 3.49
66 67 0.109735 TCGAGCTGAACGTGTGCTAG 60.110 55.000 9.63 9.87 37.16 3.42
67 68 0.109735 CGAGCTGAACGTGTGCTAGA 60.110 55.000 9.63 0.00 37.16 2.43
68 69 1.666023 CGAGCTGAACGTGTGCTAGAA 60.666 52.381 9.63 0.00 37.16 2.10
69 70 1.721926 GAGCTGAACGTGTGCTAGAAC 59.278 52.381 9.63 0.00 37.16 3.01
70 71 1.341531 AGCTGAACGTGTGCTAGAACT 59.658 47.619 1.64 0.00 35.05 3.01
71 72 1.721926 GCTGAACGTGTGCTAGAACTC 59.278 52.381 1.64 0.00 0.00 3.01
72 73 1.979469 CTGAACGTGTGCTAGAACTCG 59.021 52.381 21.00 21.00 41.49 4.18
73 74 1.335597 TGAACGTGTGCTAGAACTCGG 60.336 52.381 24.99 10.58 40.39 4.63
74 75 0.956633 AACGTGTGCTAGAACTCGGA 59.043 50.000 24.99 0.00 40.39 4.55
75 76 0.522180 ACGTGTGCTAGAACTCGGAG 59.478 55.000 24.99 2.83 40.39 4.63
76 77 0.179161 CGTGTGCTAGAACTCGGAGG 60.179 60.000 16.08 0.00 34.36 4.30
77 78 0.889306 GTGTGCTAGAACTCGGAGGT 59.111 55.000 10.23 1.51 0.00 3.85
78 79 0.888619 TGTGCTAGAACTCGGAGGTG 59.111 55.000 10.23 0.00 0.00 4.00
79 80 0.458716 GTGCTAGAACTCGGAGGTGC 60.459 60.000 10.23 3.39 0.00 5.01
80 81 1.142097 GCTAGAACTCGGAGGTGCC 59.858 63.158 10.23 0.00 0.00 5.01
89 90 4.180496 GGAGGTGCCGTAGTTTCG 57.820 61.111 0.00 0.00 0.00 3.46
97 98 3.204505 CCGTAGTTTCGGTGCTTGA 57.795 52.632 0.00 0.00 44.77 3.02
98 99 1.722011 CCGTAGTTTCGGTGCTTGAT 58.278 50.000 0.00 0.00 44.77 2.57
99 100 1.659098 CCGTAGTTTCGGTGCTTGATC 59.341 52.381 0.00 0.00 44.77 2.92
100 101 1.320555 CGTAGTTTCGGTGCTTGATCG 59.679 52.381 0.00 0.00 0.00 3.69
101 102 1.659098 GTAGTTTCGGTGCTTGATCGG 59.341 52.381 0.00 0.00 0.00 4.18
102 103 0.034896 AGTTTCGGTGCTTGATCGGT 59.965 50.000 0.00 0.00 0.00 4.69
103 104 0.442699 GTTTCGGTGCTTGATCGGTC 59.557 55.000 0.00 0.00 0.00 4.79
104 105 1.011968 TTTCGGTGCTTGATCGGTCG 61.012 55.000 0.00 0.00 0.00 4.79
105 106 2.829043 TTCGGTGCTTGATCGGTCGG 62.829 60.000 0.00 0.00 0.00 4.79
106 107 2.511600 GGTGCTTGATCGGTCGGG 60.512 66.667 0.00 0.00 0.00 5.14
107 108 3.195698 GTGCTTGATCGGTCGGGC 61.196 66.667 5.85 5.85 0.00 6.13
108 109 4.467084 TGCTTGATCGGTCGGGCC 62.467 66.667 9.60 0.00 0.00 5.80
119 120 4.720902 TCGGGCCGTGGAGACGTA 62.721 66.667 27.32 0.00 44.54 3.57
120 121 4.487412 CGGGCCGTGGAGACGTAC 62.487 72.222 19.97 0.00 44.54 3.67
121 122 4.487412 GGGCCGTGGAGACGTACG 62.487 72.222 15.01 15.01 44.54 3.67
122 123 3.434319 GGCCGTGGAGACGTACGA 61.434 66.667 24.41 0.00 44.54 3.43
123 124 2.202401 GCCGTGGAGACGTACGAC 60.202 66.667 24.41 16.77 44.54 4.34
124 125 2.684843 GCCGTGGAGACGTACGACT 61.685 63.158 24.41 21.94 44.54 4.18
125 126 1.361668 GCCGTGGAGACGTACGACTA 61.362 60.000 24.41 3.99 44.54 2.59
126 127 0.371645 CCGTGGAGACGTACGACTAC 59.628 60.000 24.41 22.43 44.54 2.73
127 128 1.070821 CGTGGAGACGTACGACTACA 58.929 55.000 25.38 25.38 42.54 2.74
128 129 1.662629 CGTGGAGACGTACGACTACAT 59.337 52.381 30.09 6.44 42.54 2.29
129 130 2.285486 CGTGGAGACGTACGACTACATC 60.285 54.545 30.09 22.29 42.54 3.06
130 131 2.674852 GTGGAGACGTACGACTACATCA 59.325 50.000 30.09 17.91 33.76 3.07
131 132 3.125829 GTGGAGACGTACGACTACATCAA 59.874 47.826 30.09 9.42 33.76 2.57
132 133 3.125829 TGGAGACGTACGACTACATCAAC 59.874 47.826 25.38 9.63 0.00 3.18
133 134 3.486542 GGAGACGTACGACTACATCAACC 60.487 52.174 24.41 12.48 0.00 3.77
134 135 3.076621 AGACGTACGACTACATCAACCA 58.923 45.455 24.41 0.00 0.00 3.67
135 136 3.503363 AGACGTACGACTACATCAACCAA 59.497 43.478 24.41 0.00 0.00 3.67
136 137 4.022935 AGACGTACGACTACATCAACCAAA 60.023 41.667 24.41 0.00 0.00 3.28
137 138 4.813027 ACGTACGACTACATCAACCAAAT 58.187 39.130 24.41 0.00 0.00 2.32
138 139 4.624024 ACGTACGACTACATCAACCAAATG 59.376 41.667 24.41 0.00 0.00 2.32
139 140 4.491924 CGTACGACTACATCAACCAAATGC 60.492 45.833 10.44 0.00 0.00 3.56
140 141 3.674997 ACGACTACATCAACCAAATGCT 58.325 40.909 0.00 0.00 0.00 3.79
141 142 4.072131 ACGACTACATCAACCAAATGCTT 58.928 39.130 0.00 0.00 0.00 3.91
142 143 4.154195 ACGACTACATCAACCAAATGCTTC 59.846 41.667 0.00 0.00 0.00 3.86
143 144 4.437390 CGACTACATCAACCAAATGCTTCC 60.437 45.833 0.00 0.00 0.00 3.46
144 145 3.440173 ACTACATCAACCAAATGCTTCCG 59.560 43.478 0.00 0.00 0.00 4.30
145 146 2.238521 ACATCAACCAAATGCTTCCGT 58.761 42.857 0.00 0.00 0.00 4.69
146 147 2.627699 ACATCAACCAAATGCTTCCGTT 59.372 40.909 0.00 0.00 0.00 4.44
147 148 2.791383 TCAACCAAATGCTTCCGTTG 57.209 45.000 0.00 0.00 36.09 4.10
148 149 2.028130 TCAACCAAATGCTTCCGTTGT 58.972 42.857 0.00 0.00 36.17 3.32
149 150 2.034053 TCAACCAAATGCTTCCGTTGTC 59.966 45.455 0.00 0.00 36.17 3.18
150 151 0.591170 ACCAAATGCTTCCGTTGTCG 59.409 50.000 0.00 0.00 0.00 4.35
151 152 0.871722 CCAAATGCTTCCGTTGTCGA 59.128 50.000 0.00 0.00 39.71 4.20
152 153 1.468520 CCAAATGCTTCCGTTGTCGAT 59.531 47.619 0.00 0.00 39.71 3.59
153 154 2.476185 CCAAATGCTTCCGTTGTCGATC 60.476 50.000 0.00 0.00 39.71 3.69
154 155 2.386661 AATGCTTCCGTTGTCGATCT 57.613 45.000 0.00 0.00 39.71 2.75
155 156 3.520290 AATGCTTCCGTTGTCGATCTA 57.480 42.857 0.00 0.00 39.71 1.98
156 157 2.273370 TGCTTCCGTTGTCGATCTAC 57.727 50.000 0.00 0.00 39.71 2.59
157 158 1.542472 TGCTTCCGTTGTCGATCTACA 59.458 47.619 0.00 0.00 39.71 2.74
158 159 2.029739 TGCTTCCGTTGTCGATCTACAA 60.030 45.455 8.63 8.63 39.71 2.41
159 160 2.599082 GCTTCCGTTGTCGATCTACAAG 59.401 50.000 12.70 7.56 39.92 3.16
160 161 2.933495 TCCGTTGTCGATCTACAAGG 57.067 50.000 20.13 20.13 39.92 3.61
162 163 2.649331 CGTTGTCGATCTACAAGGGT 57.351 50.000 19.59 0.00 39.92 4.34
163 164 3.770263 CGTTGTCGATCTACAAGGGTA 57.230 47.619 19.59 0.00 39.92 3.69
164 165 3.432782 CGTTGTCGATCTACAAGGGTAC 58.567 50.000 19.59 6.90 39.92 3.34
165 166 3.432782 GTTGTCGATCTACAAGGGTACG 58.567 50.000 12.70 0.00 39.92 3.67
166 167 2.715046 TGTCGATCTACAAGGGTACGT 58.285 47.619 0.00 0.00 0.00 3.57
167 168 3.872696 TGTCGATCTACAAGGGTACGTA 58.127 45.455 0.00 0.00 0.00 3.57
168 169 3.873361 TGTCGATCTACAAGGGTACGTAG 59.127 47.826 0.00 0.00 37.12 3.51
169 170 4.122776 GTCGATCTACAAGGGTACGTAGA 58.877 47.826 9.79 9.79 45.99 2.59
174 175 4.847198 TCTACAAGGGTACGTAGATCACA 58.153 43.478 0.00 0.00 39.28 3.58
175 176 3.863142 ACAAGGGTACGTAGATCACAC 57.137 47.619 0.00 0.00 0.00 3.82
176 177 3.428532 ACAAGGGTACGTAGATCACACT 58.571 45.455 0.00 0.00 0.00 3.55
177 178 3.442977 ACAAGGGTACGTAGATCACACTC 59.557 47.826 0.00 0.00 0.00 3.51
178 179 3.648507 AGGGTACGTAGATCACACTCT 57.351 47.619 0.00 0.00 0.00 3.24
179 180 3.543665 AGGGTACGTAGATCACACTCTC 58.456 50.000 0.00 0.00 0.00 3.20
180 181 2.617774 GGGTACGTAGATCACACTCTCC 59.382 54.545 0.00 0.00 0.00 3.71
181 182 2.617774 GGTACGTAGATCACACTCTCCC 59.382 54.545 0.00 0.00 0.00 4.30
182 183 1.765230 ACGTAGATCACACTCTCCCC 58.235 55.000 0.00 0.00 0.00 4.81
183 184 1.285373 ACGTAGATCACACTCTCCCCT 59.715 52.381 0.00 0.00 0.00 4.79
184 185 1.950909 CGTAGATCACACTCTCCCCTC 59.049 57.143 0.00 0.00 0.00 4.30
185 186 2.422235 CGTAGATCACACTCTCCCCTCT 60.422 54.545 0.00 0.00 0.00 3.69
186 187 2.452600 AGATCACACTCTCCCCTCTC 57.547 55.000 0.00 0.00 0.00 3.20
187 188 1.028905 GATCACACTCTCCCCTCTCG 58.971 60.000 0.00 0.00 0.00 4.04
188 189 0.333312 ATCACACTCTCCCCTCTCGT 59.667 55.000 0.00 0.00 0.00 4.18
189 190 0.112606 TCACACTCTCCCCTCTCGTT 59.887 55.000 0.00 0.00 0.00 3.85
190 191 0.244994 CACACTCTCCCCTCTCGTTG 59.755 60.000 0.00 0.00 0.00 4.10
191 192 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
192 193 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
193 194 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
194 195 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
195 196 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
196 197 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
197 198 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
198 199 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
199 200 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
200 201 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
201 202 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
202 203 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
203 204 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
204 205 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
205 206 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
206 207 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
207 208 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
208 209 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
209 210 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
210 211 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
211 212 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
212 213 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
213 214 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
214 215 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
215 216 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
216 217 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
217 218 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
218 219 0.179181 CACCATGATCTTGCGTGTGC 60.179 55.000 15.81 0.00 43.20 4.57
230 231 2.325509 GCGTGTGCGTAGGAATTTTT 57.674 45.000 0.00 0.00 40.81 1.94
253 254 8.631676 TTTTTGAAATTACTACGAAACCCAAC 57.368 30.769 0.00 0.00 0.00 3.77
254 255 6.939132 TTGAAATTACTACGAAACCCAACA 57.061 33.333 0.00 0.00 0.00 3.33
270 271 6.529084 ACCCAACATCAATAAGATCCCATA 57.471 37.500 0.00 0.00 33.72 2.74
331 332 1.433199 TGTCCTTCTCCTCCTTCTCCA 59.567 52.381 0.00 0.00 0.00 3.86
362 363 5.578336 CAGTTCGTGCTTTAGATCATCTTCA 59.422 40.000 0.00 0.00 0.00 3.02
364 365 6.820656 AGTTCGTGCTTTAGATCATCTTCATT 59.179 34.615 0.00 0.00 0.00 2.57
365 366 6.834959 TCGTGCTTTAGATCATCTTCATTC 57.165 37.500 0.00 0.00 0.00 2.67
366 367 6.340522 TCGTGCTTTAGATCATCTTCATTCA 58.659 36.000 0.00 0.00 0.00 2.57
367 368 6.256539 TCGTGCTTTAGATCATCTTCATTCAC 59.743 38.462 0.00 0.00 0.00 3.18
368 369 6.036408 CGTGCTTTAGATCATCTTCATTCACA 59.964 38.462 0.00 0.00 0.00 3.58
369 370 7.254692 CGTGCTTTAGATCATCTTCATTCACAT 60.255 37.037 0.00 0.00 0.00 3.21
370 371 8.068977 GTGCTTTAGATCATCTTCATTCACATC 58.931 37.037 0.00 0.00 0.00 3.06
411 412 0.463833 GACAACTTCCCGGCCATAGG 60.464 60.000 2.24 0.00 0.00 2.57
426 427 2.361438 CCATAGGTACAACGACTCCCTC 59.639 54.545 0.00 0.00 0.00 4.30
491 492 2.126888 CGCCATCGGTTTGTGCAC 60.127 61.111 10.75 10.75 0.00 4.57
495 496 1.502990 CCATCGGTTTGTGCACGTCA 61.503 55.000 13.13 0.00 0.00 4.35
524 525 2.885266 CGACTAATCCCTCTTCGATCCA 59.115 50.000 0.00 0.00 0.00 3.41
645 656 8.667463 CAATTTGCAGGGGTATAAAAATTTGAG 58.333 33.333 0.00 0.00 0.00 3.02
679 690 4.588951 GGTATTTCCTCAATCCCCATTTCC 59.411 45.833 0.00 0.00 0.00 3.13
683 694 1.142870 CCTCAATCCCCATTTCCGCTA 59.857 52.381 0.00 0.00 0.00 4.26
690 701 0.465642 CCCATTTCCGCTACCCCTTC 60.466 60.000 0.00 0.00 0.00 3.46
832 847 4.873129 CCCCGATCGCCACACTCG 62.873 72.222 10.32 0.00 0.00 4.18
1008 1042 0.745845 GGCACGGCAAGATGATCACT 60.746 55.000 0.00 0.00 0.00 3.41
1395 1450 4.803426 GACGAGTCCGGCAGCCTG 62.803 72.222 10.54 2.40 44.91 4.85
1904 1992 1.608717 AAGGCCGGCAACAACAACAA 61.609 50.000 30.85 0.00 0.00 2.83
1926 2020 0.902531 ACAGCAAGTACGGGCAGTAT 59.097 50.000 13.14 0.00 37.69 2.12
2148 2245 1.861542 CGCGCAAAGGTTCCATTCCA 61.862 55.000 8.75 0.00 0.00 3.53
2149 2246 0.532115 GCGCAAAGGTTCCATTCCAT 59.468 50.000 0.30 0.00 0.00 3.41
2150 2247 1.748493 GCGCAAAGGTTCCATTCCATA 59.252 47.619 0.30 0.00 0.00 2.74
2151 2248 2.165437 GCGCAAAGGTTCCATTCCATAA 59.835 45.455 0.30 0.00 0.00 1.90
2152 2249 3.181476 GCGCAAAGGTTCCATTCCATAAT 60.181 43.478 0.30 0.00 0.00 1.28
2153 2250 4.610945 CGCAAAGGTTCCATTCCATAATC 58.389 43.478 0.00 0.00 0.00 1.75
2154 2251 4.499696 CGCAAAGGTTCCATTCCATAATCC 60.500 45.833 0.00 0.00 0.00 3.01
2155 2252 4.405358 GCAAAGGTTCCATTCCATAATCCA 59.595 41.667 0.00 0.00 0.00 3.41
2202 2303 0.027586 GTTAATTAGTGCCCGCGCTG 59.972 55.000 12.89 0.00 37.92 5.18
2227 2329 7.715249 TGATAATCTGCTCTGTTATTGGTAACC 59.285 37.037 0.00 0.00 39.55 2.85
2492 2644 1.480954 TCTGCTTCCGGTAATCACTCC 59.519 52.381 0.00 0.00 0.00 3.85
2511 2676 1.132689 CCCTGCTCCCTCCCTAAGTAT 60.133 57.143 0.00 0.00 0.00 2.12
2514 2679 1.258676 GCTCCCTCCCTAAGTATCCG 58.741 60.000 0.00 0.00 0.00 4.18
2564 2729 4.201589 CGTCAGTTACCGAGCAGTTAATTG 60.202 45.833 0.00 0.00 0.00 2.32
2688 2859 3.768922 GGTGCGCTCCTCTGCTCT 61.769 66.667 20.97 0.00 0.00 4.09
2693 2864 1.153409 CGCTCCTCTGCTCTGCATT 60.153 57.895 0.00 0.00 38.13 3.56
2742 2923 8.623903 GGTTCATTTCATTCATATGCAGTAGAA 58.376 33.333 0.00 0.00 0.00 2.10
2953 3150 1.018226 AGGTACGACCAGAGACGACG 61.018 60.000 6.78 0.00 41.95 5.12
2990 3187 3.406361 CGAGCCGAGCACACACAC 61.406 66.667 0.00 0.00 0.00 3.82
2998 3195 2.287970 CCGAGCACACACACTAGTACAA 60.288 50.000 0.00 0.00 0.00 2.41
3020 3217 0.956633 CAGGCTTGCACACTGACAAT 59.043 50.000 5.74 0.00 34.21 2.71
3205 3402 5.406649 CACAGCTTGGTTCTTGTTTGTTTA 58.593 37.500 0.00 0.00 0.00 2.01
3206 3403 5.288472 CACAGCTTGGTTCTTGTTTGTTTAC 59.712 40.000 0.00 0.00 0.00 2.01
3224 3426 1.797025 ACTAAGCTGCTGGTTCGTTC 58.203 50.000 11.52 0.00 35.36 3.95
3443 3658 3.777925 CCGCCGTTCTCTTGTGCG 61.778 66.667 0.00 0.00 44.47 5.34
3444 3659 3.036084 CGCCGTTCTCTTGTGCGT 61.036 61.111 0.00 0.00 40.33 5.24
3445 3660 2.551270 GCCGTTCTCTTGTGCGTG 59.449 61.111 0.00 0.00 0.00 5.34
3446 3661 2.551270 CCGTTCTCTTGTGCGTGC 59.449 61.111 0.00 0.00 0.00 5.34
3528 3743 4.537433 GGGCTGTGAGCTAGCGGG 62.537 72.222 9.55 0.30 41.99 6.13
3596 3811 1.381872 CGGACAGAGGAGGGGACAT 60.382 63.158 0.00 0.00 0.00 3.06
3597 3812 1.680522 CGGACAGAGGAGGGGACATG 61.681 65.000 0.00 0.00 0.00 3.21
3601 3816 2.774351 GAGGAGGGGACATGGGGG 60.774 72.222 0.00 0.00 0.00 5.40
3645 3860 1.750399 GGGGACATGATGCGTGCTT 60.750 57.895 0.00 0.00 0.00 3.91
3646 3861 1.430632 GGGACATGATGCGTGCTTG 59.569 57.895 0.00 0.00 0.00 4.01
3736 3961 2.884639 TGTTTAGGGCAAGAGTTTCAGC 59.115 45.455 0.00 0.00 0.00 4.26
3797 4034 2.399580 TCAATCCGGTTTGGGGTTTTT 58.600 42.857 22.06 0.00 38.76 1.94
3829 4066 0.695924 TACTCCATGGGTGTGTTGGG 59.304 55.000 13.02 0.00 31.55 4.12
3864 4101 1.695597 CCTGGAGGGAGGATGGCTT 60.696 63.158 0.00 0.00 34.69 4.35
3872 4114 2.943265 AGGATGGCTTGGCTGGGT 60.943 61.111 0.00 0.00 0.00 4.51
3943 4185 7.010339 AGAGCTCTTGTTCACCTTATTACTT 57.990 36.000 11.45 0.00 0.00 2.24
3987 4229 3.923017 ACTTGTACTTGGCATTTCAGC 57.077 42.857 0.00 0.00 0.00 4.26
4011 4335 8.861086 AGCGTCTTTTAGGAGAAGATGATAATA 58.139 33.333 9.56 0.00 40.81 0.98
4120 4458 7.642669 CATCAACATCTTGCTAACCGAAATAT 58.357 34.615 0.00 0.00 0.00 1.28
4221 4559 3.451178 TGTGGCAGAGTACCTAAATCTCC 59.549 47.826 0.00 0.00 0.00 3.71
4241 4579 5.054390 TCCAGCCGCTTAAATGTTTAAAG 57.946 39.130 0.00 0.00 32.73 1.85
4404 4742 7.939784 ATTAGTTGAAAAATGTACTCCCTCC 57.060 36.000 0.00 0.00 0.00 4.30
4405 4743 5.319043 AGTTGAAAAATGTACTCCCTCCA 57.681 39.130 0.00 0.00 0.00 3.86
4406 4744 5.892348 AGTTGAAAAATGTACTCCCTCCAT 58.108 37.500 0.00 0.00 0.00 3.41
4407 4745 6.314917 AGTTGAAAAATGTACTCCCTCCATT 58.685 36.000 0.00 0.00 0.00 3.16
4408 4746 6.434340 AGTTGAAAAATGTACTCCCTCCATTC 59.566 38.462 0.00 0.00 0.00 2.67
4409 4747 5.261216 TGAAAAATGTACTCCCTCCATTCC 58.739 41.667 0.00 0.00 0.00 3.01
4410 4748 4.946160 AAAATGTACTCCCTCCATTCCA 57.054 40.909 0.00 0.00 0.00 3.53
4411 4749 3.933861 AATGTACTCCCTCCATTCCAC 57.066 47.619 0.00 0.00 0.00 4.02
4412 4750 2.335681 TGTACTCCCTCCATTCCACA 57.664 50.000 0.00 0.00 0.00 4.17
4413 4751 2.626785 TGTACTCCCTCCATTCCACAA 58.373 47.619 0.00 0.00 0.00 3.33
4414 4752 3.189606 TGTACTCCCTCCATTCCACAAT 58.810 45.455 0.00 0.00 0.00 2.71
4415 4753 2.814805 ACTCCCTCCATTCCACAATG 57.185 50.000 0.00 0.00 39.45 2.82
4416 4754 1.995542 ACTCCCTCCATTCCACAATGT 59.004 47.619 0.00 0.00 38.22 2.71
4417 4755 3.189606 ACTCCCTCCATTCCACAATGTA 58.810 45.455 0.00 0.00 38.22 2.29
4418 4756 3.200825 ACTCCCTCCATTCCACAATGTAG 59.799 47.826 0.00 0.00 38.22 2.74
4419 4757 3.189606 TCCCTCCATTCCACAATGTAGT 58.810 45.455 0.00 0.00 38.22 2.73
4420 4758 3.054434 TCCCTCCATTCCACAATGTAGTG 60.054 47.826 0.00 0.00 38.22 2.74
4421 4759 2.684881 CCTCCATTCCACAATGTAGTGC 59.315 50.000 0.00 0.00 38.22 4.40
4422 4760 3.614092 CTCCATTCCACAATGTAGTGCT 58.386 45.455 0.00 0.00 38.22 4.40
4423 4761 4.012374 CTCCATTCCACAATGTAGTGCTT 58.988 43.478 0.00 0.00 38.22 3.91
4424 4762 4.009675 TCCATTCCACAATGTAGTGCTTC 58.990 43.478 0.00 0.00 38.22 3.86
4425 4763 4.012374 CCATTCCACAATGTAGTGCTTCT 58.988 43.478 0.00 0.00 38.22 2.85
4426 4764 4.095483 CCATTCCACAATGTAGTGCTTCTC 59.905 45.833 0.00 0.00 38.22 2.87
4427 4765 4.623932 TTCCACAATGTAGTGCTTCTCT 57.376 40.909 0.00 0.00 38.18 3.10
4428 4766 5.738619 TTCCACAATGTAGTGCTTCTCTA 57.261 39.130 0.00 0.00 38.18 2.43
4429 4767 5.939764 TCCACAATGTAGTGCTTCTCTAT 57.060 39.130 0.00 0.00 38.18 1.98
4430 4768 5.907207 TCCACAATGTAGTGCTTCTCTATC 58.093 41.667 0.00 0.00 38.18 2.08
4431 4769 5.053145 CCACAATGTAGTGCTTCTCTATCC 58.947 45.833 0.00 0.00 38.18 2.59
4432 4770 4.742167 CACAATGTAGTGCTTCTCTATCCG 59.258 45.833 0.00 0.00 32.04 4.18
4433 4771 3.651803 ATGTAGTGCTTCTCTATCCGC 57.348 47.619 0.00 0.00 0.00 5.54
4434 4772 1.333931 TGTAGTGCTTCTCTATCCGCG 59.666 52.381 0.00 0.00 0.00 6.46
4435 4773 1.334243 GTAGTGCTTCTCTATCCGCGT 59.666 52.381 4.92 0.00 0.00 6.01
4436 4774 0.101399 AGTGCTTCTCTATCCGCGTG 59.899 55.000 4.92 0.00 0.00 5.34
4437 4775 1.226974 TGCTTCTCTATCCGCGTGC 60.227 57.895 4.92 0.00 0.00 5.34
4438 4776 1.066587 GCTTCTCTATCCGCGTGCT 59.933 57.895 4.92 0.00 0.00 4.40
4439 4777 0.528684 GCTTCTCTATCCGCGTGCTT 60.529 55.000 4.92 0.00 0.00 3.91
4440 4778 1.482278 CTTCTCTATCCGCGTGCTTC 58.518 55.000 4.92 0.00 0.00 3.86
4441 4779 0.815095 TTCTCTATCCGCGTGCTTCA 59.185 50.000 4.92 0.00 0.00 3.02
4442 4780 0.815095 TCTCTATCCGCGTGCTTCAA 59.185 50.000 4.92 0.00 0.00 2.69
4443 4781 0.924090 CTCTATCCGCGTGCTTCAAC 59.076 55.000 4.92 0.00 0.00 3.18
4444 4782 0.530744 TCTATCCGCGTGCTTCAACT 59.469 50.000 4.92 0.00 0.00 3.16
4445 4783 1.067142 TCTATCCGCGTGCTTCAACTT 60.067 47.619 4.92 0.00 0.00 2.66
4446 4784 1.732259 CTATCCGCGTGCTTCAACTTT 59.268 47.619 4.92 0.00 0.00 2.66
4447 4785 0.238289 ATCCGCGTGCTTCAACTTTG 59.762 50.000 4.92 0.00 0.00 2.77
4448 4786 0.812014 TCCGCGTGCTTCAACTTTGA 60.812 50.000 4.92 0.00 34.92 2.69
4449 4787 0.657368 CCGCGTGCTTCAACTTTGAC 60.657 55.000 4.92 0.00 36.83 3.18
4450 4788 0.657368 CGCGTGCTTCAACTTTGACC 60.657 55.000 0.00 0.00 36.83 4.02
4451 4789 0.657368 GCGTGCTTCAACTTTGACCG 60.657 55.000 0.00 0.00 36.83 4.79
4452 4790 0.655733 CGTGCTTCAACTTTGACCGT 59.344 50.000 0.00 0.00 36.83 4.83
4453 4791 1.862201 CGTGCTTCAACTTTGACCGTA 59.138 47.619 0.00 0.00 36.83 4.02
4454 4792 2.285756 CGTGCTTCAACTTTGACCGTAA 59.714 45.455 0.00 0.00 36.83 3.18
4455 4793 3.242478 CGTGCTTCAACTTTGACCGTAAA 60.242 43.478 0.00 0.00 36.83 2.01
4456 4794 4.553938 CGTGCTTCAACTTTGACCGTAAAT 60.554 41.667 0.00 0.00 36.83 1.40
4457 4795 5.278604 GTGCTTCAACTTTGACCGTAAATT 58.721 37.500 0.00 0.00 36.83 1.82
4458 4796 5.746721 GTGCTTCAACTTTGACCGTAAATTT 59.253 36.000 0.00 0.00 36.83 1.82
4459 4797 6.913673 GTGCTTCAACTTTGACCGTAAATTTA 59.086 34.615 0.00 0.00 36.83 1.40
4460 4798 7.432838 GTGCTTCAACTTTGACCGTAAATTTAA 59.567 33.333 0.00 0.00 36.83 1.52
4461 4799 7.432838 TGCTTCAACTTTGACCGTAAATTTAAC 59.567 33.333 0.00 0.00 36.83 2.01
4462 4800 7.646526 GCTTCAACTTTGACCGTAAATTTAACT 59.353 33.333 0.00 0.00 36.83 2.24
4471 4809 9.896263 TTGACCGTAAATTTAACTATCAAAACC 57.104 29.630 0.00 0.00 0.00 3.27
4472 4810 8.229137 TGACCGTAAATTTAACTATCAAAACCG 58.771 33.333 0.00 0.00 0.00 4.44
4473 4811 8.321650 ACCGTAAATTTAACTATCAAAACCGA 57.678 30.769 0.00 0.00 0.00 4.69
4474 4812 8.949177 ACCGTAAATTTAACTATCAAAACCGAT 58.051 29.630 0.00 0.00 0.00 4.18
4475 4813 9.777575 CCGTAAATTTAACTATCAAAACCGATT 57.222 29.630 0.00 0.00 0.00 3.34
4478 4816 7.734538 AATTTAACTATCAAAACCGATTGCG 57.265 32.000 0.00 0.00 37.24 4.85
4494 4832 2.673687 CGGCGGGGGCAAAAGTTA 60.674 61.111 0.00 0.00 0.00 2.24
4495 4833 2.049767 CGGCGGGGGCAAAAGTTAT 61.050 57.895 0.00 0.00 0.00 1.89
4496 4834 0.748729 CGGCGGGGGCAAAAGTTATA 60.749 55.000 0.00 0.00 0.00 0.98
4497 4835 1.699730 GGCGGGGGCAAAAGTTATAT 58.300 50.000 0.00 0.00 0.00 0.86
4498 4836 1.611977 GGCGGGGGCAAAAGTTATATC 59.388 52.381 0.00 0.00 0.00 1.63
4499 4837 1.611977 GCGGGGGCAAAAGTTATATCC 59.388 52.381 0.00 0.00 0.00 2.59
4500 4838 1.877443 CGGGGGCAAAAGTTATATCCG 59.123 52.381 0.00 0.00 0.00 4.18
4501 4839 2.747135 CGGGGGCAAAAGTTATATCCGT 60.747 50.000 0.00 0.00 0.00 4.69
4502 4840 2.621526 GGGGGCAAAAGTTATATCCGTG 59.378 50.000 0.00 0.00 0.00 4.94
4503 4841 3.547746 GGGGCAAAAGTTATATCCGTGA 58.452 45.455 0.00 0.00 0.00 4.35
4504 4842 3.949113 GGGGCAAAAGTTATATCCGTGAA 59.051 43.478 0.00 0.00 0.00 3.18
4505 4843 4.583073 GGGGCAAAAGTTATATCCGTGAAT 59.417 41.667 0.00 0.00 0.00 2.57
4506 4844 5.068591 GGGGCAAAAGTTATATCCGTGAATT 59.931 40.000 0.00 0.00 0.00 2.17
4507 4845 6.206498 GGGCAAAAGTTATATCCGTGAATTC 58.794 40.000 0.00 0.00 0.00 2.17
4508 4846 5.907391 GGCAAAAGTTATATCCGTGAATTCG 59.093 40.000 0.04 0.00 0.00 3.34
4509 4847 6.457799 GGCAAAAGTTATATCCGTGAATTCGT 60.458 38.462 0.04 0.00 0.00 3.85
4510 4848 7.254522 GGCAAAAGTTATATCCGTGAATTCGTA 60.255 37.037 0.04 0.00 0.00 3.43
4511 4849 8.280497 GCAAAAGTTATATCCGTGAATTCGTAT 58.720 33.333 0.04 0.00 0.00 3.06
4514 4852 7.792383 AGTTATATCCGTGAATTCGTATTCG 57.208 36.000 9.79 0.45 42.55 3.34
4515 4853 7.587629 AGTTATATCCGTGAATTCGTATTCGA 58.412 34.615 9.79 2.59 42.55 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.144703 GCGTCGGGGAGGAGTTCC 62.145 72.222 0.00 0.00 46.00 3.62
2 3 2.214920 AAAGCGTCGGGGAGGAGTT 61.215 57.895 0.00 0.00 0.00 3.01
4 5 2.125512 CAAAGCGTCGGGGAGGAG 60.126 66.667 0.00 0.00 0.00 3.69
5 6 4.388499 GCAAAGCGTCGGGGAGGA 62.388 66.667 0.00 0.00 0.00 3.71
7 8 3.121030 CAGCAAAGCGTCGGGGAG 61.121 66.667 0.00 0.00 0.00 4.30
8 9 4.697756 CCAGCAAAGCGTCGGGGA 62.698 66.667 0.00 0.00 0.00 4.81
9 10 3.976701 ATCCAGCAAAGCGTCGGGG 62.977 63.158 0.00 0.00 0.00 5.73
11 12 2.802667 CGATCCAGCAAAGCGTCGG 61.803 63.158 0.00 0.00 0.00 4.79
12 13 2.697425 CGATCCAGCAAAGCGTCG 59.303 61.111 0.00 0.00 0.00 5.12
13 14 1.424493 CTCCGATCCAGCAAAGCGTC 61.424 60.000 0.00 0.00 0.00 5.19
14 15 1.448540 CTCCGATCCAGCAAAGCGT 60.449 57.895 0.00 0.00 0.00 5.07
15 16 2.817423 GCTCCGATCCAGCAAAGCG 61.817 63.158 6.46 0.00 36.82 4.68
16 17 2.476320 GGCTCCGATCCAGCAAAGC 61.476 63.158 12.26 1.54 38.77 3.51
17 18 1.821332 GGGCTCCGATCCAGCAAAG 60.821 63.158 12.26 0.00 38.77 2.77
18 19 2.272146 GGGCTCCGATCCAGCAAA 59.728 61.111 12.26 0.00 38.77 3.68
30 31 3.227792 GATGACGATCCCCGGGCTC 62.228 68.421 17.73 13.32 43.93 4.70
31 32 3.234730 GATGACGATCCCCGGGCT 61.235 66.667 17.73 3.63 43.93 5.19
32 33 4.664677 CGATGACGATCCCCGGGC 62.665 72.222 17.73 0.00 43.93 6.13
33 34 2.910479 TCGATGACGATCCCCGGG 60.910 66.667 15.80 15.80 43.81 5.73
41 42 0.454452 CACGTTCAGCTCGATGACGA 60.454 55.000 13.59 0.00 46.56 4.20
42 43 0.729478 ACACGTTCAGCTCGATGACG 60.729 55.000 0.00 4.93 41.26 4.35
43 44 0.710567 CACACGTTCAGCTCGATGAC 59.289 55.000 0.00 0.00 0.00 3.06
44 45 1.008875 GCACACGTTCAGCTCGATGA 61.009 55.000 0.00 0.00 0.00 2.92
45 46 1.010935 AGCACACGTTCAGCTCGATG 61.011 55.000 0.00 0.07 32.05 3.84
46 47 0.526211 TAGCACACGTTCAGCTCGAT 59.474 50.000 9.17 0.00 39.68 3.59
47 48 0.109735 CTAGCACACGTTCAGCTCGA 60.110 55.000 9.17 0.00 39.68 4.04
48 49 0.109735 TCTAGCACACGTTCAGCTCG 60.110 55.000 9.17 4.49 39.68 5.03
49 50 1.721926 GTTCTAGCACACGTTCAGCTC 59.278 52.381 9.17 0.00 39.68 4.09
50 51 1.341531 AGTTCTAGCACACGTTCAGCT 59.658 47.619 10.52 10.52 42.14 4.24
51 52 1.721926 GAGTTCTAGCACACGTTCAGC 59.278 52.381 0.00 0.00 0.00 4.26
52 53 1.979469 CGAGTTCTAGCACACGTTCAG 59.021 52.381 4.36 0.00 0.00 3.02
53 54 1.335597 CCGAGTTCTAGCACACGTTCA 60.336 52.381 10.84 0.00 0.00 3.18
54 55 1.068748 TCCGAGTTCTAGCACACGTTC 60.069 52.381 10.84 0.00 0.00 3.95
55 56 0.956633 TCCGAGTTCTAGCACACGTT 59.043 50.000 10.84 0.00 0.00 3.99
56 57 0.522180 CTCCGAGTTCTAGCACACGT 59.478 55.000 10.84 0.00 0.00 4.49
57 58 0.179161 CCTCCGAGTTCTAGCACACG 60.179 60.000 5.46 5.46 0.00 4.49
58 59 0.889306 ACCTCCGAGTTCTAGCACAC 59.111 55.000 0.00 0.00 0.00 3.82
59 60 0.888619 CACCTCCGAGTTCTAGCACA 59.111 55.000 0.00 0.00 0.00 4.57
60 61 0.458716 GCACCTCCGAGTTCTAGCAC 60.459 60.000 0.00 0.00 0.00 4.40
61 62 1.605058 GGCACCTCCGAGTTCTAGCA 61.605 60.000 0.00 0.00 0.00 3.49
62 63 1.142097 GGCACCTCCGAGTTCTAGC 59.858 63.158 0.00 0.00 0.00 3.42
72 73 1.447314 CCGAAACTACGGCACCTCC 60.447 63.158 0.00 0.00 46.20 4.30
73 74 4.180496 CCGAAACTACGGCACCTC 57.820 61.111 0.00 0.00 46.20 3.85
80 81 1.320555 CGATCAAGCACCGAAACTACG 59.679 52.381 0.00 0.00 0.00 3.51
81 82 1.659098 CCGATCAAGCACCGAAACTAC 59.341 52.381 0.00 0.00 0.00 2.73
82 83 1.274167 ACCGATCAAGCACCGAAACTA 59.726 47.619 0.00 0.00 0.00 2.24
83 84 0.034896 ACCGATCAAGCACCGAAACT 59.965 50.000 0.00 0.00 0.00 2.66
84 85 0.442699 GACCGATCAAGCACCGAAAC 59.557 55.000 0.00 0.00 0.00 2.78
85 86 1.011968 CGACCGATCAAGCACCGAAA 61.012 55.000 0.00 0.00 0.00 3.46
86 87 1.445410 CGACCGATCAAGCACCGAA 60.445 57.895 0.00 0.00 0.00 4.30
87 88 2.180769 CGACCGATCAAGCACCGA 59.819 61.111 0.00 0.00 0.00 4.69
88 89 2.885644 CCGACCGATCAAGCACCG 60.886 66.667 0.00 0.00 0.00 4.94
89 90 2.511600 CCCGACCGATCAAGCACC 60.512 66.667 0.00 0.00 0.00 5.01
90 91 3.195698 GCCCGACCGATCAAGCAC 61.196 66.667 0.00 0.00 0.00 4.40
91 92 4.467084 GGCCCGACCGATCAAGCA 62.467 66.667 0.00 0.00 0.00 3.91
109 110 2.674852 TGATGTAGTCGTACGTCTCCAC 59.325 50.000 18.09 12.42 43.23 4.02
110 111 2.976589 TGATGTAGTCGTACGTCTCCA 58.023 47.619 18.09 13.77 43.23 3.86
111 112 3.486542 GGTTGATGTAGTCGTACGTCTCC 60.487 52.174 18.09 8.18 43.23 3.71
112 113 3.125829 TGGTTGATGTAGTCGTACGTCTC 59.874 47.826 18.09 10.69 43.23 3.36
113 114 3.076621 TGGTTGATGTAGTCGTACGTCT 58.923 45.455 18.54 18.54 43.23 4.18
114 115 3.476295 TGGTTGATGTAGTCGTACGTC 57.524 47.619 16.05 10.06 43.16 4.34
115 116 3.921119 TTGGTTGATGTAGTCGTACGT 57.079 42.857 16.05 0.00 30.95 3.57
116 117 4.491924 GCATTTGGTTGATGTAGTCGTACG 60.492 45.833 9.53 9.53 30.95 3.67
117 118 4.630069 AGCATTTGGTTGATGTAGTCGTAC 59.370 41.667 0.00 0.00 0.00 3.67
118 119 4.827692 AGCATTTGGTTGATGTAGTCGTA 58.172 39.130 0.00 0.00 0.00 3.43
119 120 3.674997 AGCATTTGGTTGATGTAGTCGT 58.325 40.909 0.00 0.00 0.00 4.34
120 121 4.437390 GGAAGCATTTGGTTGATGTAGTCG 60.437 45.833 0.00 0.00 35.69 4.18
121 122 4.437390 CGGAAGCATTTGGTTGATGTAGTC 60.437 45.833 0.00 0.00 35.69 2.59
122 123 3.440173 CGGAAGCATTTGGTTGATGTAGT 59.560 43.478 0.00 0.00 35.69 2.73
123 124 3.440173 ACGGAAGCATTTGGTTGATGTAG 59.560 43.478 0.00 0.00 35.69 2.74
124 125 3.417101 ACGGAAGCATTTGGTTGATGTA 58.583 40.909 0.00 0.00 35.69 2.29
125 126 2.238521 ACGGAAGCATTTGGTTGATGT 58.761 42.857 0.00 0.00 35.69 3.06
126 127 2.988493 CAACGGAAGCATTTGGTTGATG 59.012 45.455 0.00 0.00 41.22 3.07
127 128 2.627699 ACAACGGAAGCATTTGGTTGAT 59.372 40.909 8.96 0.00 41.22 2.57
128 129 2.028130 ACAACGGAAGCATTTGGTTGA 58.972 42.857 8.96 0.00 41.22 3.18
129 130 2.393764 GACAACGGAAGCATTTGGTTG 58.606 47.619 0.00 1.08 43.02 3.77
130 131 1.001815 CGACAACGGAAGCATTTGGTT 60.002 47.619 0.00 0.00 38.61 3.67
131 132 0.591170 CGACAACGGAAGCATTTGGT 59.409 50.000 0.00 0.00 35.72 3.67
132 133 0.871722 TCGACAACGGAAGCATTTGG 59.128 50.000 0.00 0.00 40.21 3.28
133 134 2.416547 AGATCGACAACGGAAGCATTTG 59.583 45.455 0.00 0.00 40.21 2.32
134 135 2.699954 AGATCGACAACGGAAGCATTT 58.300 42.857 0.00 0.00 40.21 2.32
135 136 2.386661 AGATCGACAACGGAAGCATT 57.613 45.000 0.00 0.00 40.21 3.56
136 137 2.165641 TGTAGATCGACAACGGAAGCAT 59.834 45.455 6.15 0.00 40.21 3.79
137 138 1.542472 TGTAGATCGACAACGGAAGCA 59.458 47.619 6.15 0.00 40.21 3.91
138 139 2.273370 TGTAGATCGACAACGGAAGC 57.727 50.000 6.15 0.00 40.21 3.86
139 140 3.179830 CCTTGTAGATCGACAACGGAAG 58.820 50.000 21.52 12.05 40.21 3.46
140 141 2.094390 CCCTTGTAGATCGACAACGGAA 60.094 50.000 23.12 4.49 37.56 4.30
141 142 1.475280 CCCTTGTAGATCGACAACGGA 59.525 52.381 23.12 4.81 37.56 4.69
142 143 1.203994 ACCCTTGTAGATCGACAACGG 59.796 52.381 24.67 24.67 39.81 4.44
143 144 2.649331 ACCCTTGTAGATCGACAACG 57.351 50.000 16.32 12.60 34.40 4.10
144 145 3.119708 ACGTACCCTTGTAGATCGACAAC 60.120 47.826 16.32 7.35 34.40 3.32
145 146 3.084039 ACGTACCCTTGTAGATCGACAA 58.916 45.455 18.68 18.68 36.98 3.18
146 147 2.715046 ACGTACCCTTGTAGATCGACA 58.285 47.619 4.35 4.35 0.00 4.35
147 148 4.122776 TCTACGTACCCTTGTAGATCGAC 58.877 47.826 0.00 0.00 41.47 4.20
148 149 4.406648 TCTACGTACCCTTGTAGATCGA 57.593 45.455 4.74 0.00 41.47 3.59
153 154 4.639310 AGTGTGATCTACGTACCCTTGTAG 59.361 45.833 0.00 0.62 39.50 2.74
154 155 4.592942 AGTGTGATCTACGTACCCTTGTA 58.407 43.478 0.00 0.00 0.00 2.41
155 156 3.428532 AGTGTGATCTACGTACCCTTGT 58.571 45.455 0.00 0.00 0.00 3.16
156 157 3.695060 AGAGTGTGATCTACGTACCCTTG 59.305 47.826 0.00 0.00 0.00 3.61
157 158 3.946558 GAGAGTGTGATCTACGTACCCTT 59.053 47.826 0.00 0.00 0.00 3.95
158 159 3.543665 GAGAGTGTGATCTACGTACCCT 58.456 50.000 0.00 0.00 0.00 4.34
159 160 2.617774 GGAGAGTGTGATCTACGTACCC 59.382 54.545 0.00 0.00 0.00 3.69
160 161 2.617774 GGGAGAGTGTGATCTACGTACC 59.382 54.545 0.00 0.62 30.07 3.34
161 162 2.617774 GGGGAGAGTGTGATCTACGTAC 59.382 54.545 0.00 0.00 30.07 3.67
162 163 2.508716 AGGGGAGAGTGTGATCTACGTA 59.491 50.000 0.00 0.00 30.07 3.57
163 164 1.285373 AGGGGAGAGTGTGATCTACGT 59.715 52.381 0.00 0.00 30.07 3.57
164 165 1.950909 GAGGGGAGAGTGTGATCTACG 59.049 57.143 0.00 0.00 30.07 3.51
165 166 3.219281 GAGAGGGGAGAGTGTGATCTAC 58.781 54.545 0.00 0.00 0.00 2.59
166 167 2.158740 CGAGAGGGGAGAGTGTGATCTA 60.159 54.545 0.00 0.00 0.00 1.98
167 168 1.409521 CGAGAGGGGAGAGTGTGATCT 60.410 57.143 0.00 0.00 0.00 2.75
168 169 1.028905 CGAGAGGGGAGAGTGTGATC 58.971 60.000 0.00 0.00 0.00 2.92
169 170 0.333312 ACGAGAGGGGAGAGTGTGAT 59.667 55.000 0.00 0.00 0.00 3.06
170 171 0.112606 AACGAGAGGGGAGAGTGTGA 59.887 55.000 0.00 0.00 0.00 3.58
171 172 0.244994 CAACGAGAGGGGAGAGTGTG 59.755 60.000 0.00 0.00 0.00 3.82
172 173 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
173 174 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
174 175 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
175 176 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
176 177 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
177 178 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
178 179 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
179 180 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
180 181 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
181 182 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
182 183 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
183 184 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
184 185 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
185 186 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
186 187 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
187 188 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
188 189 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
189 190 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
190 191 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
191 192 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
192 193 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
193 194 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
194 195 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
195 196 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
196 197 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
197 198 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
198 199 1.441738 CACACGCAAGATCATGGTGA 58.558 50.000 19.56 0.00 43.62 4.02
199 200 0.179181 GCACACGCAAGATCATGGTG 60.179 55.000 14.17 14.17 43.62 4.17
200 201 1.638388 CGCACACGCAAGATCATGGT 61.638 55.000 0.00 0.00 43.62 3.55
201 202 1.061411 CGCACACGCAAGATCATGG 59.939 57.895 0.00 0.00 43.62 3.66
202 203 0.998669 TACGCACACGCAAGATCATG 59.001 50.000 0.00 0.00 45.53 3.07
203 204 1.280982 CTACGCACACGCAAGATCAT 58.719 50.000 0.00 0.00 45.53 2.45
204 205 0.735978 CCTACGCACACGCAAGATCA 60.736 55.000 0.00 0.00 45.53 2.92
205 206 0.457853 TCCTACGCACACGCAAGATC 60.458 55.000 0.00 0.00 45.53 2.75
206 207 0.037697 TTCCTACGCACACGCAAGAT 60.038 50.000 0.00 0.00 45.53 2.40
207 208 0.037697 ATTCCTACGCACACGCAAGA 60.038 50.000 0.00 0.00 45.53 3.02
208 209 0.796312 AATTCCTACGCACACGCAAG 59.204 50.000 0.00 0.00 45.53 4.01
209 210 1.231221 AAATTCCTACGCACACGCAA 58.769 45.000 0.00 0.00 45.53 4.85
210 211 1.231221 AAAATTCCTACGCACACGCA 58.769 45.000 0.00 0.00 45.53 5.24
211 212 2.325509 AAAAATTCCTACGCACACGC 57.674 45.000 0.00 0.00 45.53 5.34
228 229 8.248945 TGTTGGGTTTCGTAGTAATTTCAAAAA 58.751 29.630 0.00 0.00 0.00 1.94
229 230 7.769220 TGTTGGGTTTCGTAGTAATTTCAAAA 58.231 30.769 0.00 0.00 0.00 2.44
230 231 7.330900 TGTTGGGTTTCGTAGTAATTTCAAA 57.669 32.000 0.00 0.00 0.00 2.69
231 232 6.939132 TGTTGGGTTTCGTAGTAATTTCAA 57.061 33.333 0.00 0.00 0.00 2.69
232 233 6.711194 TGATGTTGGGTTTCGTAGTAATTTCA 59.289 34.615 0.00 0.00 0.00 2.69
233 234 7.136289 TGATGTTGGGTTTCGTAGTAATTTC 57.864 36.000 0.00 0.00 0.00 2.17
234 235 7.513371 TTGATGTTGGGTTTCGTAGTAATTT 57.487 32.000 0.00 0.00 0.00 1.82
235 236 7.696992 ATTGATGTTGGGTTTCGTAGTAATT 57.303 32.000 0.00 0.00 0.00 1.40
236 237 8.795842 TTATTGATGTTGGGTTTCGTAGTAAT 57.204 30.769 0.00 0.00 0.00 1.89
237 238 8.095792 TCTTATTGATGTTGGGTTTCGTAGTAA 58.904 33.333 0.00 0.00 0.00 2.24
238 239 7.613585 TCTTATTGATGTTGGGTTTCGTAGTA 58.386 34.615 0.00 0.00 0.00 1.82
239 240 6.469410 TCTTATTGATGTTGGGTTTCGTAGT 58.531 36.000 0.00 0.00 0.00 2.73
240 241 6.978343 TCTTATTGATGTTGGGTTTCGTAG 57.022 37.500 0.00 0.00 0.00 3.51
241 242 6.540914 GGATCTTATTGATGTTGGGTTTCGTA 59.459 38.462 0.00 0.00 35.14 3.43
242 243 5.357032 GGATCTTATTGATGTTGGGTTTCGT 59.643 40.000 0.00 0.00 35.14 3.85
243 244 5.221048 GGGATCTTATTGATGTTGGGTTTCG 60.221 44.000 0.00 0.00 35.14 3.46
244 245 5.656416 TGGGATCTTATTGATGTTGGGTTTC 59.344 40.000 0.00 0.00 35.14 2.78
245 246 5.588845 TGGGATCTTATTGATGTTGGGTTT 58.411 37.500 0.00 0.00 35.14 3.27
246 247 5.205517 TGGGATCTTATTGATGTTGGGTT 57.794 39.130 0.00 0.00 35.14 4.11
247 248 4.879295 TGGGATCTTATTGATGTTGGGT 57.121 40.909 0.00 0.00 35.14 4.51
248 249 6.072508 CGTTATGGGATCTTATTGATGTTGGG 60.073 42.308 0.00 0.00 35.14 4.12
249 250 6.710295 TCGTTATGGGATCTTATTGATGTTGG 59.290 38.462 0.00 0.00 35.14 3.77
250 251 7.728847 TCGTTATGGGATCTTATTGATGTTG 57.271 36.000 0.00 0.00 35.14 3.33
251 252 7.939039 ACATCGTTATGGGATCTTATTGATGTT 59.061 33.333 0.00 0.00 39.53 2.71
252 253 7.453393 ACATCGTTATGGGATCTTATTGATGT 58.547 34.615 0.00 0.00 38.21 3.06
253 254 7.912056 ACATCGTTATGGGATCTTATTGATG 57.088 36.000 0.00 0.00 37.43 3.07
254 255 8.924511 AAACATCGTTATGGGATCTTATTGAT 57.075 30.769 0.00 0.00 37.43 2.57
362 363 5.816258 GTGACATGAGATGTGAGATGTGAAT 59.184 40.000 0.00 0.00 45.03 2.57
364 365 4.382362 GGTGACATGAGATGTGAGATGTGA 60.382 45.833 0.00 0.00 45.03 3.58
365 366 3.869832 GGTGACATGAGATGTGAGATGTG 59.130 47.826 0.00 0.00 45.03 3.21
366 367 3.429960 CGGTGACATGAGATGTGAGATGT 60.430 47.826 0.00 0.00 45.03 3.06
367 368 3.121544 CGGTGACATGAGATGTGAGATG 58.878 50.000 0.00 0.00 45.03 2.90
368 369 2.762887 ACGGTGACATGAGATGTGAGAT 59.237 45.455 0.00 0.00 45.03 2.75
369 370 2.164422 GACGGTGACATGAGATGTGAGA 59.836 50.000 0.00 0.00 45.03 3.27
370 371 2.534298 GACGGTGACATGAGATGTGAG 58.466 52.381 0.00 0.00 45.03 3.51
411 412 1.336609 GGTGTGAGGGAGTCGTTGTAC 60.337 57.143 0.00 0.00 0.00 2.90
456 457 1.736645 GCACCGCGAGTTTAGCTCA 60.737 57.895 8.23 0.00 44.33 4.26
491 492 3.304123 GGGATTAGTCGATGTCTCTGACG 60.304 52.174 0.00 0.00 37.69 4.35
495 496 4.447138 AGAGGGATTAGTCGATGTCTCT 57.553 45.455 0.00 0.00 0.00 3.10
539 541 6.166279 TGAGCCTTACAAGAACATACTTCAG 58.834 40.000 0.00 0.00 0.00 3.02
541 543 7.435068 TTTGAGCCTTACAAGAACATACTTC 57.565 36.000 0.00 0.00 0.00 3.01
545 550 7.598493 GCAATTTTTGAGCCTTACAAGAACATA 59.402 33.333 0.00 0.00 0.00 2.29
630 641 9.877137 CAAAAAGCAACCTCAAATTTTTATACC 57.123 29.630 0.00 0.00 32.80 2.73
636 647 8.518430 AATACCAAAAAGCAACCTCAAATTTT 57.482 26.923 0.00 0.00 0.00 1.82
637 648 8.518430 AAATACCAAAAAGCAACCTCAAATTT 57.482 26.923 0.00 0.00 0.00 1.82
645 656 5.208463 TGAGGAAATACCAAAAAGCAACC 57.792 39.130 0.00 0.00 42.04 3.77
679 690 1.110518 GGAGAGAGGAAGGGGTAGCG 61.111 65.000 0.00 0.00 0.00 4.26
683 694 0.043485 GGAAGGAGAGAGGAAGGGGT 59.957 60.000 0.00 0.00 0.00 4.95
690 701 1.305381 ACACCGGGAAGGAGAGAGG 60.305 63.158 6.32 0.00 45.00 3.69
1008 1042 1.669440 GTGGTAGAAGTCCGTGCCA 59.331 57.895 0.00 0.00 0.00 4.92
1395 1450 1.709147 GCACCACGATCTGCACCATC 61.709 60.000 0.00 0.00 33.31 3.51
1752 1819 2.927856 TTGAAGCTGGAGCCCCGA 60.928 61.111 0.00 0.00 43.38 5.14
1904 1992 0.884704 CTGCCCGTACTTGCTGTTGT 60.885 55.000 5.28 0.00 0.00 3.32
1998 2095 2.120718 AGGTCCTTGCCGTCCTCT 59.879 61.111 0.00 0.00 0.00 3.69
2148 2245 4.021016 GGCTAGGACAGTCGAATGGATTAT 60.021 45.833 18.14 0.00 0.00 1.28
2149 2246 3.321111 GGCTAGGACAGTCGAATGGATTA 59.679 47.826 18.14 5.22 0.00 1.75
2150 2247 2.103263 GGCTAGGACAGTCGAATGGATT 59.897 50.000 18.14 4.28 0.00 3.01
2151 2248 1.689273 GGCTAGGACAGTCGAATGGAT 59.311 52.381 18.14 4.96 0.00 3.41
2152 2249 1.112113 GGCTAGGACAGTCGAATGGA 58.888 55.000 18.14 0.00 0.00 3.41
2153 2250 0.824109 TGGCTAGGACAGTCGAATGG 59.176 55.000 18.14 0.00 0.00 3.16
2154 2251 2.898729 ATGGCTAGGACAGTCGAATG 57.101 50.000 11.98 11.98 0.00 2.67
2155 2252 3.034635 AGAATGGCTAGGACAGTCGAAT 58.965 45.455 0.00 0.00 40.89 3.34
2202 2303 7.095607 CGGTTACCAATAACAGAGCAGATTATC 60.096 40.741 1.13 0.00 42.26 1.75
2227 2329 2.033407 GTCCGCTGTGATTGATTGATCG 60.033 50.000 0.00 0.00 0.00 3.69
2492 2644 2.252714 GATACTTAGGGAGGGAGCAGG 58.747 57.143 0.00 0.00 0.00 4.85
2564 2729 1.351707 CATGCATGCGTAACGGGTC 59.648 57.895 14.93 0.00 0.00 4.46
2711 2882 6.098552 TGCATATGAATGAAATGAACCATGGT 59.901 34.615 13.00 13.00 34.84 3.55
2716 2887 8.158169 TCTACTGCATATGAATGAAATGAACC 57.842 34.615 6.97 0.00 34.84 3.62
2720 2891 8.573885 ACCATTCTACTGCATATGAATGAAATG 58.426 33.333 24.56 15.77 44.83 2.32
2721 2892 8.573885 CACCATTCTACTGCATATGAATGAAAT 58.426 33.333 24.56 13.87 44.83 2.17
2742 2923 1.897133 ACATGCAAATGTCAGCACCAT 59.103 42.857 0.00 0.00 44.49 3.55
2953 3150 2.128507 TTGGTTTGGTTGGTCGGGC 61.129 57.895 0.00 0.00 0.00 6.13
2990 3187 2.480419 GTGCAAGCCTGTGTTGTACTAG 59.520 50.000 0.00 0.00 37.49 2.57
2998 3195 1.097547 GTCAGTGTGCAAGCCTGTGT 61.098 55.000 8.01 0.00 0.00 3.72
3205 3402 1.344763 AGAACGAACCAGCAGCTTAGT 59.655 47.619 0.00 0.00 0.00 2.24
3206 3403 1.996191 GAGAACGAACCAGCAGCTTAG 59.004 52.381 0.00 0.00 0.00 2.18
3338 3540 7.989416 TTTCATGGTTTTAACTAGTGGTAGG 57.011 36.000 0.00 0.00 0.00 3.18
3411 3626 2.962569 CGGGTGAGACAAGAGCGA 59.037 61.111 0.00 0.00 0.00 4.93
3443 3658 1.201998 CGAAGATGACACTGCATGCAC 60.202 52.381 18.46 7.77 0.00 4.57
3444 3659 1.081094 CGAAGATGACACTGCATGCA 58.919 50.000 21.29 21.29 0.00 3.96
3445 3660 0.376152 CCGAAGATGACACTGCATGC 59.624 55.000 11.82 11.82 0.00 4.06
3446 3661 0.376152 GCCGAAGATGACACTGCATG 59.624 55.000 0.00 0.00 0.00 4.06
3654 3876 5.986501 AGAATCCTAGTAATTAGCCTCCG 57.013 43.478 0.00 0.00 0.00 4.63
3736 3961 7.122055 TGGCAGTCCTTTATAATTTACCAACAG 59.878 37.037 0.00 0.00 0.00 3.16
3797 4034 6.267699 CACCCATGGAGTACATACATCTTCTA 59.732 42.308 15.22 0.00 37.84 2.10
3846 4083 1.695597 AAGCCATCCTCCCTCCAGG 60.696 63.158 0.00 0.00 34.40 4.45
3847 4084 1.530771 CAAGCCATCCTCCCTCCAG 59.469 63.158 0.00 0.00 0.00 3.86
3848 4085 2.002977 CCAAGCCATCCTCCCTCCA 61.003 63.158 0.00 0.00 0.00 3.86
3860 4097 4.621087 ACCCAACCCAGCCAAGCC 62.621 66.667 0.00 0.00 0.00 4.35
3864 4101 4.932105 GCCAACCCAACCCAGCCA 62.932 66.667 0.00 0.00 0.00 4.75
3872 4114 2.370189 CCATTTTACAAGGCCAACCCAA 59.630 45.455 5.01 0.00 36.11 4.12
3981 4223 5.209818 TCTTCTCCTAAAAGACGCTGAAA 57.790 39.130 0.00 0.00 0.00 2.69
3982 4224 4.866508 TCTTCTCCTAAAAGACGCTGAA 57.133 40.909 0.00 0.00 0.00 3.02
3983 4225 4.462834 TCATCTTCTCCTAAAAGACGCTGA 59.537 41.667 0.00 0.00 35.68 4.26
3984 4226 4.748892 TCATCTTCTCCTAAAAGACGCTG 58.251 43.478 0.00 0.00 35.68 5.18
3985 4227 5.606348 ATCATCTTCTCCTAAAAGACGCT 57.394 39.130 0.00 0.00 35.68 5.07
3986 4228 7.954788 ATTATCATCTTCTCCTAAAAGACGC 57.045 36.000 0.00 0.00 35.68 5.19
3987 4229 9.967346 TGTATTATCATCTTCTCCTAAAAGACG 57.033 33.333 0.00 0.00 35.68 4.18
4011 4335 3.928005 AGGATGTTCTGCTCATGATGT 57.072 42.857 0.00 0.00 0.00 3.06
4120 4458 9.720667 CAATGAACTTAATTATTGAGCGATTGA 57.279 29.630 8.77 0.00 33.50 2.57
4221 4559 4.173256 CCCTTTAAACATTTAAGCGGCTG 58.827 43.478 1.81 0.00 34.45 4.85
4263 4601 7.060421 ACACCTCCTTATTACAATAATGTGGG 58.940 38.462 15.99 12.12 40.84 4.61
4397 4735 2.814805 ACATTGTGGAATGGAGGGAG 57.185 50.000 0.00 0.00 43.00 4.30
4398 4736 3.931907 CTACATTGTGGAATGGAGGGA 57.068 47.619 0.00 0.00 44.23 4.20
4402 4740 3.719268 AGCACTACATTGTGGAATGGA 57.281 42.857 7.20 0.00 43.00 3.41
4403 4741 4.012374 AGAAGCACTACATTGTGGAATGG 58.988 43.478 7.20 0.00 43.00 3.16
4404 4742 4.940046 AGAGAAGCACTACATTGTGGAATG 59.060 41.667 7.20 0.00 44.11 2.67
4405 4743 5.171339 AGAGAAGCACTACATTGTGGAAT 57.829 39.130 7.20 0.00 38.31 3.01
4406 4744 4.623932 AGAGAAGCACTACATTGTGGAA 57.376 40.909 7.20 0.00 38.31 3.53
4407 4745 5.163405 GGATAGAGAAGCACTACATTGTGGA 60.163 44.000 7.20 0.00 38.31 4.02
4408 4746 5.053145 GGATAGAGAAGCACTACATTGTGG 58.947 45.833 0.00 0.00 38.31 4.17
4409 4747 4.742167 CGGATAGAGAAGCACTACATTGTG 59.258 45.833 0.00 0.00 40.62 3.33
4410 4748 4.737946 GCGGATAGAGAAGCACTACATTGT 60.738 45.833 0.00 0.00 0.00 2.71
4411 4749 3.738282 GCGGATAGAGAAGCACTACATTG 59.262 47.826 0.00 0.00 0.00 2.82
4412 4750 3.551046 CGCGGATAGAGAAGCACTACATT 60.551 47.826 0.00 0.00 0.00 2.71
4413 4751 2.030717 CGCGGATAGAGAAGCACTACAT 60.031 50.000 0.00 0.00 0.00 2.29
4414 4752 1.333931 CGCGGATAGAGAAGCACTACA 59.666 52.381 0.00 0.00 0.00 2.74
4415 4753 1.334243 ACGCGGATAGAGAAGCACTAC 59.666 52.381 12.47 0.00 0.00 2.73
4416 4754 1.333931 CACGCGGATAGAGAAGCACTA 59.666 52.381 12.47 0.00 0.00 2.74
4417 4755 0.101399 CACGCGGATAGAGAAGCACT 59.899 55.000 12.47 0.00 0.00 4.40
4418 4756 1.483424 GCACGCGGATAGAGAAGCAC 61.483 60.000 12.47 0.00 0.00 4.40
4419 4757 1.226974 GCACGCGGATAGAGAAGCA 60.227 57.895 12.47 0.00 0.00 3.91
4420 4758 0.528684 AAGCACGCGGATAGAGAAGC 60.529 55.000 12.47 0.00 0.00 3.86
4421 4759 1.202302 TGAAGCACGCGGATAGAGAAG 60.202 52.381 12.47 0.00 0.00 2.85
4422 4760 0.815095 TGAAGCACGCGGATAGAGAA 59.185 50.000 12.47 0.00 0.00 2.87
4423 4761 0.815095 TTGAAGCACGCGGATAGAGA 59.185 50.000 12.47 0.00 0.00 3.10
4424 4762 0.924090 GTTGAAGCACGCGGATAGAG 59.076 55.000 12.47 0.00 0.00 2.43
4425 4763 0.530744 AGTTGAAGCACGCGGATAGA 59.469 50.000 12.47 0.00 0.00 1.98
4426 4764 1.359848 AAGTTGAAGCACGCGGATAG 58.640 50.000 12.47 0.00 0.00 2.08
4427 4765 1.463056 CAAAGTTGAAGCACGCGGATA 59.537 47.619 12.47 0.00 0.00 2.59
4428 4766 0.238289 CAAAGTTGAAGCACGCGGAT 59.762 50.000 12.47 0.00 0.00 4.18
4429 4767 0.812014 TCAAAGTTGAAGCACGCGGA 60.812 50.000 12.47 0.00 33.55 5.54
4430 4768 0.657368 GTCAAAGTTGAAGCACGCGG 60.657 55.000 12.47 0.00 39.21 6.46
4431 4769 0.657368 GGTCAAAGTTGAAGCACGCG 60.657 55.000 3.53 3.53 39.21 6.01
4432 4770 0.657368 CGGTCAAAGTTGAAGCACGC 60.657 55.000 0.00 0.00 39.21 5.34
4433 4771 0.655733 ACGGTCAAAGTTGAAGCACG 59.344 50.000 0.00 2.00 39.21 5.34
4434 4772 3.955771 TTACGGTCAAAGTTGAAGCAC 57.044 42.857 0.00 0.00 39.21 4.40
4435 4773 5.508200 AATTTACGGTCAAAGTTGAAGCA 57.492 34.783 0.00 0.00 39.21 3.91
4436 4774 7.646526 AGTTAAATTTACGGTCAAAGTTGAAGC 59.353 33.333 0.00 0.00 39.21 3.86
4445 4783 9.896263 GGTTTTGATAGTTAAATTTACGGTCAA 57.104 29.630 0.00 4.35 0.00 3.18
4446 4784 8.229137 CGGTTTTGATAGTTAAATTTACGGTCA 58.771 33.333 0.00 0.00 0.00 4.02
4447 4785 8.442384 TCGGTTTTGATAGTTAAATTTACGGTC 58.558 33.333 0.00 0.00 0.00 4.79
4448 4786 8.321650 TCGGTTTTGATAGTTAAATTTACGGT 57.678 30.769 0.00 0.00 0.00 4.83
4449 4787 9.777575 AATCGGTTTTGATAGTTAAATTTACGG 57.222 29.630 0.00 0.00 0.00 4.02
4452 4790 9.279904 CGCAATCGGTTTTGATAGTTAAATTTA 57.720 29.630 0.00 0.00 0.00 1.40
4453 4791 8.168681 CGCAATCGGTTTTGATAGTTAAATTT 57.831 30.769 0.00 0.00 0.00 1.82
4454 4792 7.734538 CGCAATCGGTTTTGATAGTTAAATT 57.265 32.000 0.00 0.00 0.00 1.82
4477 4815 0.748729 TATAACTTTTGCCCCCGCCG 60.749 55.000 0.00 0.00 0.00 6.46
4478 4816 1.611977 GATATAACTTTTGCCCCCGCC 59.388 52.381 0.00 0.00 0.00 6.13
4479 4817 1.611977 GGATATAACTTTTGCCCCCGC 59.388 52.381 0.00 0.00 0.00 6.13
4480 4818 1.877443 CGGATATAACTTTTGCCCCCG 59.123 52.381 0.00 0.00 0.00 5.73
4481 4819 2.621526 CACGGATATAACTTTTGCCCCC 59.378 50.000 0.00 0.00 0.00 5.40
4482 4820 3.547746 TCACGGATATAACTTTTGCCCC 58.452 45.455 0.00 0.00 0.00 5.80
4483 4821 5.767816 ATTCACGGATATAACTTTTGCCC 57.232 39.130 0.00 0.00 0.00 5.36
4484 4822 5.907391 CGAATTCACGGATATAACTTTTGCC 59.093 40.000 6.22 0.00 0.00 4.52
4485 4823 6.483687 ACGAATTCACGGATATAACTTTTGC 58.516 36.000 6.22 0.00 37.61 3.68
4488 4826 8.697067 CGAATACGAATTCACGGATATAACTTT 58.303 33.333 6.22 0.00 41.44 2.66
4489 4827 8.077991 TCGAATACGAATTCACGGATATAACTT 58.922 33.333 6.22 0.00 45.74 2.66
4490 4828 7.587629 TCGAATACGAATTCACGGATATAACT 58.412 34.615 6.22 0.00 45.74 2.24
4491 4829 7.786305 TCGAATACGAATTCACGGATATAAC 57.214 36.000 6.22 0.00 45.74 1.89


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.