Multiple sequence alignment - TraesCS7A01G190500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G190500 chr7A 100.000 8384 0 0 1 8384 148391982 148400365 0.000000e+00 15483.0
1 TraesCS7A01G190500 chr7A 95.455 44 2 0 2807 2850 148394727 148394770 4.200000e-08 71.3
2 TraesCS7A01G190500 chr7A 95.455 44 2 0 2746 2789 148394788 148394831 4.200000e-08 71.3
3 TraesCS7A01G190500 chr7A 94.872 39 2 0 579 617 18643279 18643241 2.530000e-05 62.1
4 TraesCS7A01G190500 chr7D 94.897 5173 173 40 2791 7916 146838348 146843476 0.000000e+00 8006.0
5 TraesCS7A01G190500 chr7D 95.700 1279 41 6 1485 2751 146837067 146838343 0.000000e+00 2045.0
6 TraesCS7A01G190500 chr7D 92.413 1239 49 12 203 1424 146835863 146837073 0.000000e+00 1725.0
7 TraesCS7A01G190500 chr7D 88.281 384 28 11 8011 8384 146843674 146844050 2.150000e-120 444.0
8 TraesCS7A01G190500 chr7D 88.415 164 16 3 422 582 317627664 317627501 2.390000e-45 195.0
9 TraesCS7A01G190500 chr7D 91.489 141 12 0 36 176 364127085 364127225 2.390000e-45 195.0
10 TraesCS7A01G190500 chr7D 87.898 157 15 3 424 580 302417836 302417988 1.860000e-41 182.0
11 TraesCS7A01G190500 chr7D 93.636 110 7 0 36 145 169563867 169563758 1.870000e-36 165.0
12 TraesCS7A01G190500 chr7D 100.000 39 0 0 2751 2789 146838369 146838407 1.170000e-08 73.1
13 TraesCS7A01G190500 chr7D 100.000 34 0 0 2 35 146835838 146835871 7.030000e-06 63.9
14 TraesCS7A01G190500 chr7B 97.176 2550 53 10 2791 5332 109668328 109670866 0.000000e+00 4292.0
15 TraesCS7A01G190500 chr7B 93.587 2573 116 34 200 2751 109665779 109668323 0.000000e+00 3792.0
16 TraesCS7A01G190500 chr7B 91.279 2603 145 37 5342 7885 109677596 109680175 0.000000e+00 3474.0
17 TraesCS7A01G190500 chr7B 88.832 394 35 5 7965 8354 109684163 109684551 7.610000e-130 475.0
18 TraesCS7A01G190500 chr7B 88.050 159 12 4 430 583 340149877 340150033 1.860000e-41 182.0
19 TraesCS7A01G190500 chr7B 100.000 39 0 0 2751 2789 109668349 109668387 1.170000e-08 73.1
20 TraesCS7A01G190500 chr2B 89.143 175 16 3 31 204 306803899 306804071 1.830000e-51 215.0
21 TraesCS7A01G190500 chr2B 86.740 181 20 4 41 219 771480028 771479850 1.850000e-46 198.0
22 TraesCS7A01G190500 chr6B 89.744 156 10 5 430 582 407926748 407926900 2.390000e-45 195.0
23 TraesCS7A01G190500 chr4A 88.750 160 15 3 426 584 596730732 596730889 8.590000e-45 193.0
24 TraesCS7A01G190500 chr4D 87.952 166 14 4 424 583 247394410 247394575 3.090000e-44 191.0
25 TraesCS7A01G190500 chr5D 88.050 159 12 4 430 583 48310077 48310233 1.860000e-41 182.0
26 TraesCS7A01G190500 chr1B 72.973 444 72 35 6141 6570 207141150 207140741 2.470000e-20 111.0
27 TraesCS7A01G190500 chr3B 94.118 51 3 0 6915 6965 750360014 750360064 2.510000e-10 78.7
28 TraesCS7A01G190500 chr3A 97.368 38 1 0 5530 5567 254843125 254843162 1.950000e-06 65.8
29 TraesCS7A01G190500 chr3A 89.583 48 3 2 158 204 746302554 746302600 9.090000e-05 60.2
30 TraesCS7A01G190500 chr4B 97.297 37 1 0 5530 5566 642308086 642308050 7.030000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G190500 chr7A 148391982 148400365 8383 False 15483.000000 15483 100.0000 1 8384 1 chr7A.!!$F1 8383
1 TraesCS7A01G190500 chr7D 146835838 146843476 7638 False 2959.975000 8006 95.7525 2 7916 4 chr7D.!!$F5 7914
2 TraesCS7A01G190500 chr7B 109665779 109670866 5087 False 2719.033333 4292 96.9210 200 5332 3 chr7B.!!$F2 5132
3 TraesCS7A01G190500 chr7B 109677596 109684551 6955 False 1974.500000 3474 90.0555 5342 8354 2 chr7B.!!$F3 3012

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.038166 ATGTATTGGGCGGGCCATAG 59.962 55.0 25.00 0.00 37.98 2.23 F
201 202 0.107800 CTGTGCATAGCTCTGCCACT 60.108 55.0 20.14 0.00 41.58 4.00 F
202 203 0.392060 TGTGCATAGCTCTGCCACTG 60.392 55.0 20.14 0.00 41.58 3.66 F
1473 1504 0.681243 GCCCTTGTGAATGGACTCCC 60.681 60.0 0.00 0.00 0.00 4.30 F
2771 2820 0.525761 TTCCGTGCAGCATTTTAGGC 59.474 50.0 0.00 0.00 0.00 3.93 F
2816 2865 0.328258 AGTGCCCCGCATAAAGTTCT 59.672 50.0 0.00 0.00 41.91 3.01 F
4743 4797 0.963355 GAGAGTGAGCTCGGTGAGGT 60.963 60.0 9.64 0.00 46.03 3.85 F
4919 4975 0.245539 CTTTTGGGGTGCAGCATGAG 59.754 55.0 19.06 4.09 39.69 2.90 F
6535 6602 0.178978 TGTGGGCACTACCAATTGCA 60.179 50.0 0.00 0.00 43.34 4.08 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1483 0.036388 GAGTCCATTCACAAGGGCGA 60.036 55.000 0.00 0.0 33.85 5.54 R
1454 1485 0.681243 GGGAGTCCATTCACAAGGGC 60.681 60.000 12.30 0.0 30.92 5.19 R
1756 1798 1.568504 TTCCTGCCTACACTACCAGG 58.431 55.000 0.00 0.0 44.84 4.45 R
2798 2847 0.451783 CAGAACTTTATGCGGGGCAC 59.548 55.000 0.00 0.0 43.04 5.01 R
4718 4772 1.279558 ACCGAGCTCACTCTCTACTCA 59.720 52.381 15.40 0.0 41.09 3.41 R
4767 4821 6.049149 TCATTTCCTACTTCCATCGACAATC 58.951 40.000 0.00 0.0 0.00 2.67 R
6516 6583 0.178978 TGCAATTGGTAGTGCCCACA 60.179 50.000 7.72 0.0 44.40 4.17 R
6825 6900 0.389948 CACTCGCTAACAGACCCACC 60.390 60.000 0.00 0.0 0.00 4.61 R
8051 12098 0.037232 GCCACCTCGTTTCAGCTACT 60.037 55.000 0.00 0.0 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 4.072913 CTACGCACGGTAGCAGTG 57.927 61.111 11.01 11.01 42.02 3.66
40 41 1.516386 CTACGCACGGTAGCAGTGG 60.516 63.158 15.22 9.72 42.02 4.00
41 42 3.636313 TACGCACGGTAGCAGTGGC 62.636 63.158 15.22 8.90 39.80 5.01
58 59 3.741860 CGGAGCTACGGACGGTAT 58.258 61.111 11.59 0.00 0.00 2.73
59 60 1.281960 CGGAGCTACGGACGGTATG 59.718 63.158 11.59 0.00 0.00 2.39
60 61 1.007618 GGAGCTACGGACGGTATGC 60.008 63.158 0.00 1.04 0.00 3.14
61 62 1.453762 GGAGCTACGGACGGTATGCT 61.454 60.000 13.19 13.19 37.90 3.79
62 63 0.317938 GAGCTACGGACGGTATGCTG 60.318 60.000 16.24 0.00 36.43 4.41
63 64 1.299926 GCTACGGACGGTATGCTGG 60.300 63.158 0.00 0.00 0.00 4.85
64 65 1.362717 CTACGGACGGTATGCTGGG 59.637 63.158 0.00 0.00 0.00 4.45
65 66 2.694829 CTACGGACGGTATGCTGGGC 62.695 65.000 0.00 0.00 0.00 5.36
67 68 4.910585 GGACGGTATGCTGGGCGG 62.911 72.222 0.00 0.00 0.00 6.13
68 69 4.910585 GACGGTATGCTGGGCGGG 62.911 72.222 0.00 0.00 0.00 6.13
77 78 3.142838 CTGGGCGGGCCAGATTTG 61.143 66.667 39.15 17.66 37.47 2.32
90 91 4.907879 CCAGATTTGGCTAAGCTAAAGG 57.092 45.455 0.00 0.00 41.80 3.11
91 92 3.633986 CCAGATTTGGCTAAGCTAAAGGG 59.366 47.826 0.00 0.00 41.80 3.95
92 93 4.526970 CAGATTTGGCTAAGCTAAAGGGA 58.473 43.478 0.00 0.00 41.80 4.20
93 94 4.949856 CAGATTTGGCTAAGCTAAAGGGAA 59.050 41.667 0.00 0.00 41.80 3.97
94 95 5.067023 CAGATTTGGCTAAGCTAAAGGGAAG 59.933 44.000 0.00 0.00 41.80 3.46
95 96 2.420058 TGGCTAAGCTAAAGGGAAGC 57.580 50.000 0.00 0.00 40.40 3.86
96 97 1.681538 GGCTAAGCTAAAGGGAAGCC 58.318 55.000 0.00 0.00 42.40 4.35
97 98 1.213182 GGCTAAGCTAAAGGGAAGCCT 59.787 52.381 3.95 0.00 44.85 4.58
98 99 2.566913 GCTAAGCTAAAGGGAAGCCTC 58.433 52.381 0.00 0.00 41.02 4.70
99 100 2.746803 GCTAAGCTAAAGGGAAGCCTCC 60.747 54.545 0.00 0.00 41.02 4.30
100 101 1.372501 AAGCTAAAGGGAAGCCTCCA 58.627 50.000 3.19 0.00 44.51 3.86
101 102 1.372501 AGCTAAAGGGAAGCCTCCAA 58.627 50.000 3.19 0.00 44.51 3.53
102 103 1.710809 AGCTAAAGGGAAGCCTCCAAA 59.289 47.619 3.19 0.00 44.51 3.28
103 104 1.819288 GCTAAAGGGAAGCCTCCAAAC 59.181 52.381 3.19 0.00 44.51 2.93
104 105 2.555448 GCTAAAGGGAAGCCTCCAAACT 60.555 50.000 3.19 0.00 44.51 2.66
105 106 2.775490 AAAGGGAAGCCTCCAAACTT 57.225 45.000 3.19 0.00 44.51 2.66
106 107 2.775490 AAGGGAAGCCTCCAAACTTT 57.225 45.000 3.19 0.00 44.51 2.66
107 108 3.895704 AAGGGAAGCCTCCAAACTTTA 57.104 42.857 3.19 0.00 44.51 1.85
108 109 3.156288 AGGGAAGCCTCCAAACTTTAC 57.844 47.619 3.19 0.00 44.51 2.01
109 110 2.168496 GGGAAGCCTCCAAACTTTACC 58.832 52.381 3.19 0.00 44.51 2.85
110 111 2.225041 GGGAAGCCTCCAAACTTTACCT 60.225 50.000 3.19 0.00 44.51 3.08
111 112 3.497332 GGAAGCCTCCAAACTTTACCTT 58.503 45.455 0.00 0.00 41.96 3.50
112 113 3.255888 GGAAGCCTCCAAACTTTACCTTG 59.744 47.826 0.00 0.00 41.96 3.61
113 114 3.595190 AGCCTCCAAACTTTACCTTGT 57.405 42.857 0.00 0.00 0.00 3.16
114 115 3.910989 AGCCTCCAAACTTTACCTTGTT 58.089 40.909 0.00 0.00 0.00 2.83
115 116 4.286707 AGCCTCCAAACTTTACCTTGTTT 58.713 39.130 0.00 0.00 36.91 2.83
126 127 9.884636 AAACTTTACCTTGTTTGAGCTAATTTT 57.115 25.926 0.00 0.00 35.40 1.82
127 128 8.871686 ACTTTACCTTGTTTGAGCTAATTTTG 57.128 30.769 0.00 0.00 0.00 2.44
128 129 7.438160 ACTTTACCTTGTTTGAGCTAATTTTGC 59.562 33.333 0.00 0.00 0.00 3.68
129 130 4.631131 ACCTTGTTTGAGCTAATTTTGCC 58.369 39.130 0.00 0.00 0.00 4.52
130 131 4.100808 ACCTTGTTTGAGCTAATTTTGCCA 59.899 37.500 0.00 0.00 0.00 4.92
131 132 5.221702 ACCTTGTTTGAGCTAATTTTGCCAT 60.222 36.000 0.00 0.00 0.00 4.40
132 133 5.121142 CCTTGTTTGAGCTAATTTTGCCATG 59.879 40.000 0.00 0.00 0.00 3.66
133 134 5.465532 TGTTTGAGCTAATTTTGCCATGA 57.534 34.783 0.00 0.00 0.00 3.07
134 135 5.229423 TGTTTGAGCTAATTTTGCCATGAC 58.771 37.500 0.00 0.00 0.00 3.06
135 136 5.221402 TGTTTGAGCTAATTTTGCCATGACA 60.221 36.000 0.00 0.00 0.00 3.58
136 137 4.439305 TGAGCTAATTTTGCCATGACAC 57.561 40.909 0.00 0.00 0.00 3.67
137 138 3.193267 TGAGCTAATTTTGCCATGACACC 59.807 43.478 0.00 0.00 0.00 4.16
138 139 3.434309 AGCTAATTTTGCCATGACACCT 58.566 40.909 0.00 0.00 0.00 4.00
139 140 4.599041 AGCTAATTTTGCCATGACACCTA 58.401 39.130 0.00 0.00 0.00 3.08
140 141 4.399303 AGCTAATTTTGCCATGACACCTAC 59.601 41.667 0.00 0.00 0.00 3.18
141 142 4.399303 GCTAATTTTGCCATGACACCTACT 59.601 41.667 0.00 0.00 0.00 2.57
142 143 4.789012 AATTTTGCCATGACACCTACTG 57.211 40.909 0.00 0.00 0.00 2.74
143 144 3.500448 TTTTGCCATGACACCTACTGA 57.500 42.857 0.00 0.00 0.00 3.41
144 145 3.719268 TTTGCCATGACACCTACTGAT 57.281 42.857 0.00 0.00 0.00 2.90
145 146 3.719268 TTGCCATGACACCTACTGATT 57.281 42.857 0.00 0.00 0.00 2.57
146 147 3.719268 TGCCATGACACCTACTGATTT 57.281 42.857 0.00 0.00 0.00 2.17
147 148 4.835284 TGCCATGACACCTACTGATTTA 57.165 40.909 0.00 0.00 0.00 1.40
148 149 5.172687 TGCCATGACACCTACTGATTTAA 57.827 39.130 0.00 0.00 0.00 1.52
149 150 4.941263 TGCCATGACACCTACTGATTTAAC 59.059 41.667 0.00 0.00 0.00 2.01
150 151 4.335594 GCCATGACACCTACTGATTTAACC 59.664 45.833 0.00 0.00 0.00 2.85
151 152 5.496556 CCATGACACCTACTGATTTAACCA 58.503 41.667 0.00 0.00 0.00 3.67
152 153 6.122277 CCATGACACCTACTGATTTAACCAT 58.878 40.000 0.00 0.00 0.00 3.55
153 154 6.038603 CCATGACACCTACTGATTTAACCATG 59.961 42.308 0.00 0.00 0.00 3.66
154 155 6.121776 TGACACCTACTGATTTAACCATGT 57.878 37.500 0.00 0.00 0.00 3.21
155 156 7.247456 TGACACCTACTGATTTAACCATGTA 57.753 36.000 0.00 0.00 0.00 2.29
156 157 7.857456 TGACACCTACTGATTTAACCATGTAT 58.143 34.615 0.00 0.00 0.00 2.29
157 158 8.325787 TGACACCTACTGATTTAACCATGTATT 58.674 33.333 0.00 0.00 0.00 1.89
158 159 8.506168 ACACCTACTGATTTAACCATGTATTG 57.494 34.615 0.00 0.00 0.00 1.90
166 167 2.912025 CCATGTATTGGGCGGGCC 60.912 66.667 14.65 14.65 42.33 5.80
167 168 2.123939 CATGTATTGGGCGGGCCA 60.124 61.111 20.63 20.63 37.98 5.36
168 169 1.531365 CATGTATTGGGCGGGCCAT 60.531 57.895 25.00 16.00 37.98 4.40
169 170 0.251121 CATGTATTGGGCGGGCCATA 60.251 55.000 25.00 15.10 37.98 2.74
170 171 0.038166 ATGTATTGGGCGGGCCATAG 59.962 55.000 25.00 0.00 37.98 2.23
171 172 1.971695 GTATTGGGCGGGCCATAGC 60.972 63.158 25.00 12.87 37.98 2.97
172 173 2.456443 TATTGGGCGGGCCATAGCA 61.456 57.895 25.00 9.81 42.56 3.49
173 174 2.690653 TATTGGGCGGGCCATAGCAC 62.691 60.000 25.00 14.51 42.56 4.40
176 177 4.489771 GGCGGGCCATAGCACAGT 62.490 66.667 16.98 0.00 45.52 3.55
177 178 2.438434 GCGGGCCATAGCACAGTT 60.438 61.111 4.39 0.00 45.52 3.16
178 179 2.046285 GCGGGCCATAGCACAGTTT 61.046 57.895 4.39 0.00 45.52 2.66
179 180 1.595093 GCGGGCCATAGCACAGTTTT 61.595 55.000 4.39 0.00 45.52 2.43
180 181 0.171007 CGGGCCATAGCACAGTTTTG 59.829 55.000 4.39 0.00 45.52 2.44
181 182 0.108662 GGGCCATAGCACAGTTTTGC 60.109 55.000 4.39 0.00 44.19 3.68
182 183 0.108662 GGCCATAGCACAGTTTTGCC 60.109 55.000 0.00 0.00 44.14 4.52
183 184 0.890683 GCCATAGCACAGTTTTGCCT 59.109 50.000 0.00 0.00 44.14 4.75
184 185 1.403249 GCCATAGCACAGTTTTGCCTG 60.403 52.381 0.00 0.00 44.14 4.85
185 186 1.888512 CCATAGCACAGTTTTGCCTGT 59.111 47.619 0.00 0.00 46.40 4.00
196 197 4.948257 TGCCTGTGCATAGCTCTG 57.052 55.556 4.68 0.00 44.23 3.35
197 198 1.450848 TGCCTGTGCATAGCTCTGC 60.451 57.895 16.67 16.67 44.23 4.26
198 199 2.185494 GCCTGTGCATAGCTCTGCC 61.185 63.158 20.14 12.36 41.58 4.85
199 200 1.222661 CCTGTGCATAGCTCTGCCA 59.777 57.895 20.14 15.74 41.58 4.92
200 201 1.094073 CCTGTGCATAGCTCTGCCAC 61.094 60.000 20.14 17.19 41.58 5.01
201 202 0.107800 CTGTGCATAGCTCTGCCACT 60.108 55.000 20.14 0.00 41.58 4.00
202 203 0.392060 TGTGCATAGCTCTGCCACTG 60.392 55.000 20.14 0.00 41.58 3.66
203 204 1.450848 TGCATAGCTCTGCCACTGC 60.451 57.895 20.14 6.17 41.58 4.40
205 206 1.712977 GCATAGCTCTGCCACTGCAC 61.713 60.000 12.87 0.00 44.23 4.57
206 207 1.153489 ATAGCTCTGCCACTGCACG 60.153 57.895 0.00 0.00 44.23 5.34
217 218 2.124983 CTGCACGGTAGGCTGCAT 60.125 61.111 4.64 0.00 42.43 3.96
219 220 3.264897 GCACGGTAGGCTGCATCG 61.265 66.667 4.64 2.19 33.31 3.84
342 343 8.970020 TGGAATGATGATTTTGCTATAACAGTT 58.030 29.630 0.00 0.00 0.00 3.16
386 387 3.805422 GTGACCATTATTACGGCAATCGA 59.195 43.478 0.00 0.00 42.43 3.59
428 434 6.485648 GCTCTTTCCCACACTTTTAGAGTAAA 59.514 38.462 0.00 0.00 36.65 2.01
433 439 9.856162 TTTCCCACACTTTTAGAGTAAAACTAT 57.144 29.630 0.00 0.00 36.65 2.12
435 441 8.877195 TCCCACACTTTTAGAGTAAAACTATCT 58.123 33.333 0.00 0.00 36.65 1.98
494 500 8.845227 TCTAACTCAACAAATTTGCTTATGTGA 58.155 29.630 18.12 10.50 0.00 3.58
509 515 8.334263 TGCTTATGTGACAATGAGTTAATGAA 57.666 30.769 0.00 0.00 0.00 2.57
629 646 7.615582 ATGTGTATGTTATTCTTCACTGTGG 57.384 36.000 8.11 0.00 0.00 4.17
630 647 5.411361 TGTGTATGTTATTCTTCACTGTGGC 59.589 40.000 8.11 0.00 0.00 5.01
631 648 5.643777 GTGTATGTTATTCTTCACTGTGGCT 59.356 40.000 8.11 0.00 0.00 4.75
632 649 6.816640 GTGTATGTTATTCTTCACTGTGGCTA 59.183 38.462 8.11 0.00 0.00 3.93
633 650 7.010552 GTGTATGTTATTCTTCACTGTGGCTAG 59.989 40.741 8.11 3.84 0.00 3.42
634 651 4.253685 TGTTATTCTTCACTGTGGCTAGC 58.746 43.478 6.04 6.04 0.00 3.42
759 779 1.447140 CGGAGATCGGACGGCAAAA 60.447 57.895 0.00 0.00 34.75 2.44
760 780 1.421410 CGGAGATCGGACGGCAAAAG 61.421 60.000 0.00 0.00 34.75 2.27
922 942 1.290203 CGACAGCACAATCCGCTTAT 58.710 50.000 0.00 0.00 37.72 1.73
1099 1119 0.748367 GCAATTCTTCCGACCCCTCC 60.748 60.000 0.00 0.00 0.00 4.30
1102 1122 3.937372 TTCTTCCGACCCCTCCCCC 62.937 68.421 0.00 0.00 0.00 5.40
1160 1180 1.471676 CCTACTGGATCCACGTGCTTC 60.472 57.143 11.44 8.70 34.57 3.86
1297 1318 1.644786 AAGCGATTGTAGGCGTTGGC 61.645 55.000 0.00 0.00 38.90 4.52
1338 1359 6.775088 TGTAGTTCTTCAAATCATCGAATGC 58.225 36.000 0.00 0.00 0.00 3.56
1395 1426 5.581085 GTGTGAATAAATTGACTCGCTAGGT 59.419 40.000 0.00 0.00 0.00 3.08
1438 1469 3.689161 TCGAATGCCAGTTAGGTTTGATG 59.311 43.478 0.00 0.00 40.61 3.07
1442 1473 2.107378 TGCCAGTTAGGTTTGATGGACA 59.893 45.455 0.00 0.00 40.61 4.02
1451 1482 3.642848 AGGTTTGATGGACACATGCTTTT 59.357 39.130 0.00 0.00 37.47 2.27
1452 1483 4.101430 AGGTTTGATGGACACATGCTTTTT 59.899 37.500 0.00 0.00 37.47 1.94
1454 1485 3.557577 TGATGGACACATGCTTTTTCG 57.442 42.857 0.00 0.00 37.47 3.46
1473 1504 0.681243 GCCCTTGTGAATGGACTCCC 60.681 60.000 0.00 0.00 0.00 4.30
1486 1517 1.077716 ACTCCCCAGGCATAAACGC 60.078 57.895 0.00 0.00 0.00 4.84
1608 1643 0.835276 CTGGCCTGAGACATGGATGA 59.165 55.000 3.32 0.00 0.00 2.92
1620 1655 2.283298 CATGGATGACTGAACCTTCGG 58.717 52.381 0.00 0.00 39.48 4.30
1756 1798 4.445052 TGTATGCGTGTTGTGTACAAGTAC 59.555 41.667 0.00 3.47 38.80 2.73
1837 1882 3.282885 GGAAGACTGGAAATTAGGCTGG 58.717 50.000 0.00 0.00 32.70 4.85
1956 2002 9.440773 GTGATGCTCCAGAAACATATATCATTA 57.559 33.333 0.00 0.00 0.00 1.90
2045 2091 4.040952 GGCCTGTATAGTGATCATTCAGGT 59.959 45.833 19.36 0.45 41.77 4.00
2090 2136 1.894466 TCAAGTGCAATGATTGGGGTG 59.106 47.619 7.35 0.00 0.00 4.61
2351 2399 2.218603 CAACTGTTAGTGGGGTGTCAC 58.781 52.381 0.00 0.00 37.89 3.67
2431 2479 1.022735 GAATAGCTCGTCTCGGTGGA 58.977 55.000 0.00 0.00 0.00 4.02
2499 2547 5.801350 TCTGCATGTTGTAATACAAGAGC 57.199 39.130 6.03 10.91 39.00 4.09
2628 2676 7.445096 CACTGCATACACCCTGAAATATTATCA 59.555 37.037 0.00 0.00 0.00 2.15
2664 2712 4.561735 TTCGTCCCACAAATTTCACTTC 57.438 40.909 0.00 0.00 0.00 3.01
2756 2805 9.561270 CTATGTTCACATACTCATATAGTTCCG 57.439 37.037 0.00 0.00 39.80 4.30
2757 2806 7.342769 TGTTCACATACTCATATAGTTCCGT 57.657 36.000 0.00 0.00 39.80 4.69
2758 2807 7.200455 TGTTCACATACTCATATAGTTCCGTG 58.800 38.462 0.00 0.00 39.80 4.94
2759 2808 5.769367 TCACATACTCATATAGTTCCGTGC 58.231 41.667 0.00 0.00 39.80 5.34
2760 2809 5.300792 TCACATACTCATATAGTTCCGTGCA 59.699 40.000 0.00 0.00 39.80 4.57
2761 2810 5.631096 CACATACTCATATAGTTCCGTGCAG 59.369 44.000 0.00 0.00 39.80 4.41
2762 2811 3.099267 ACTCATATAGTTCCGTGCAGC 57.901 47.619 0.00 0.00 33.35 5.25
2763 2812 2.430694 ACTCATATAGTTCCGTGCAGCA 59.569 45.455 0.00 0.00 33.35 4.41
2764 2813 3.070159 ACTCATATAGTTCCGTGCAGCAT 59.930 43.478 0.00 0.00 33.35 3.79
2765 2814 4.060900 CTCATATAGTTCCGTGCAGCATT 58.939 43.478 0.00 0.00 0.00 3.56
2766 2815 4.450976 TCATATAGTTCCGTGCAGCATTT 58.549 39.130 0.00 0.00 0.00 2.32
2767 2816 4.881273 TCATATAGTTCCGTGCAGCATTTT 59.119 37.500 0.00 0.00 0.00 1.82
2768 2817 6.052360 TCATATAGTTCCGTGCAGCATTTTA 58.948 36.000 0.00 0.00 0.00 1.52
2769 2818 4.882671 ATAGTTCCGTGCAGCATTTTAG 57.117 40.909 0.00 0.00 0.00 1.85
2770 2819 1.812571 AGTTCCGTGCAGCATTTTAGG 59.187 47.619 0.00 0.00 0.00 2.69
2771 2820 0.525761 TTCCGTGCAGCATTTTAGGC 59.474 50.000 0.00 0.00 0.00 3.93
2772 2821 0.607762 TCCGTGCAGCATTTTAGGCA 60.608 50.000 0.00 0.00 0.00 4.75
2776 2825 3.040409 GCAGCATTTTAGGCACTGC 57.960 52.632 0.00 0.00 45.95 4.40
2778 2827 2.953466 CAGCATTTTAGGCACTGCAT 57.047 45.000 2.82 0.00 41.52 3.96
2779 2828 2.536365 CAGCATTTTAGGCACTGCATG 58.464 47.619 2.82 0.00 41.52 4.06
2780 2829 2.164827 CAGCATTTTAGGCACTGCATGA 59.835 45.455 2.82 0.00 41.52 3.07
2781 2830 2.426024 AGCATTTTAGGCACTGCATGAG 59.574 45.455 2.82 0.00 41.52 2.90
2782 2831 2.165030 GCATTTTAGGCACTGCATGAGT 59.835 45.455 2.82 0.00 41.52 3.41
2783 2832 3.378112 GCATTTTAGGCACTGCATGAGTA 59.622 43.478 2.82 0.00 41.52 2.59
2784 2833 4.497006 GCATTTTAGGCACTGCATGAGTAG 60.497 45.833 2.82 0.00 41.52 2.57
2785 2834 4.551702 TTTTAGGCACTGCATGAGTAGA 57.448 40.909 2.82 0.00 41.52 2.59
2786 2835 4.551702 TTTAGGCACTGCATGAGTAGAA 57.448 40.909 2.82 0.00 41.52 2.10
2787 2836 4.551702 TTAGGCACTGCATGAGTAGAAA 57.448 40.909 2.82 0.00 41.52 2.52
2788 2837 2.704572 AGGCACTGCATGAGTAGAAAC 58.295 47.619 2.82 0.00 37.18 2.78
2789 2838 2.304180 AGGCACTGCATGAGTAGAAACT 59.696 45.455 2.82 0.00 37.18 2.66
2816 2865 0.328258 AGTGCCCCGCATAAAGTTCT 59.672 50.000 0.00 0.00 41.91 3.01
3000 3049 3.948473 TCACTTCTACCAAGATCGAGGAG 59.052 47.826 12.65 0.03 0.00 3.69
3534 3584 5.522824 GGAAGGTACGAGAATTACATGGTTC 59.477 44.000 0.00 0.00 0.00 3.62
3918 3968 2.863401 TGATCATGCATCTGCTTTGC 57.137 45.000 0.00 0.02 42.66 3.68
3926 3976 2.199236 GCATCTGCTTTGCAAATAGGC 58.801 47.619 13.23 13.32 38.41 3.93
3948 3998 5.923939 GCAAGTGCAGAGGAGATTTCCTTC 61.924 50.000 6.20 0.36 46.82 3.46
4138 4188 8.434392 AGTAACTTCTGTTGGTAAATGGTAAGA 58.566 33.333 0.00 0.00 37.59 2.10
4221 4271 6.316140 TCGCAGAAGTCATACAGCATTTAAAT 59.684 34.615 0.00 0.00 0.00 1.40
4223 4273 7.485913 CGCAGAAGTCATACAGCATTTAAATTT 59.514 33.333 0.00 0.00 0.00 1.82
4285 4335 4.410555 AGATGGATTTCCCTCTTGTAGTCC 59.589 45.833 0.00 0.00 37.68 3.85
4679 4733 4.553330 TTTCACTCCTTCAGGTATGACC 57.447 45.455 0.00 0.00 38.99 4.02
4718 4772 3.891977 GGAGTTTTCTTTTCCAGCCTCTT 59.108 43.478 0.00 0.00 0.00 2.85
4743 4797 0.963355 GAGAGTGAGCTCGGTGAGGT 60.963 60.000 9.64 0.00 46.03 3.85
4767 4821 9.683069 GGTATACAGAATTTTTCCTGCATATTG 57.317 33.333 5.01 0.00 33.90 1.90
4878 4934 9.371136 TGAAACTATAGAGAAAGTTATGCACAG 57.629 33.333 6.78 0.00 34.91 3.66
4919 4975 0.245539 CTTTTGGGGTGCAGCATGAG 59.754 55.000 19.06 4.09 39.69 2.90
5265 5321 4.346418 AGTCCATATTACTGAAGGCTGAGG 59.654 45.833 0.00 0.00 0.00 3.86
5266 5322 3.071602 TCCATATTACTGAAGGCTGAGGC 59.928 47.826 0.00 0.00 37.82 4.70
5267 5323 2.890808 TATTACTGAAGGCTGAGGCG 57.109 50.000 0.00 0.00 39.81 5.52
5268 5324 0.462759 ATTACTGAAGGCTGAGGCGC 60.463 55.000 0.00 0.00 39.81 6.53
5483 5539 5.600696 AGCCGTGATGTTTTTCTTGAAAAT 58.399 33.333 9.02 0.00 39.29 1.82
5510 5572 5.070685 GTCCTGAGGATTTTAAACAGGTGT 58.929 41.667 16.98 0.00 45.50 4.16
5527 5589 2.288763 GGTGTGGGTGGTTTGCTTTATG 60.289 50.000 0.00 0.00 0.00 1.90
5528 5590 1.342819 TGTGGGTGGTTTGCTTTATGC 59.657 47.619 0.00 0.00 43.25 3.14
5529 5591 0.972883 TGGGTGGTTTGCTTTATGCC 59.027 50.000 0.00 0.00 42.00 4.40
5530 5592 1.266178 GGGTGGTTTGCTTTATGCCT 58.734 50.000 0.00 0.00 42.00 4.75
5531 5593 1.623311 GGGTGGTTTGCTTTATGCCTT 59.377 47.619 0.00 0.00 42.00 4.35
5532 5594 2.038426 GGGTGGTTTGCTTTATGCCTTT 59.962 45.455 0.00 0.00 42.00 3.11
5533 5595 3.259625 GGGTGGTTTGCTTTATGCCTTTA 59.740 43.478 0.00 0.00 42.00 1.85
5534 5596 4.081142 GGGTGGTTTGCTTTATGCCTTTAT 60.081 41.667 0.00 0.00 42.00 1.40
5713 5775 1.663379 ATCACGGTCCGCGATTCAGA 61.663 55.000 12.28 0.00 0.00 3.27
5731 5796 2.609459 CAGAGTCACAACACAAGTGGAC 59.391 50.000 5.08 2.65 37.58 4.02
5803 5869 3.444916 GACATCTTAAGCGGACGAATGA 58.555 45.455 0.00 0.00 0.00 2.57
6067 6133 5.824624 TCTGTATCAAATTCTCTGGAATGGC 59.175 40.000 0.00 0.00 40.86 4.40
6231 6297 8.991275 TCCCTTCATTTCAAAATATAAGGCATT 58.009 29.630 16.30 0.00 38.33 3.56
6277 6343 0.852777 CACGACCTGACAGACGTTTG 59.147 55.000 19.36 4.25 36.86 2.93
6453 6520 5.803967 GCTTGATCAAAAACAGCTTATGGAG 59.196 40.000 9.88 0.00 0.00 3.86
6458 6525 5.324409 TCAAAAACAGCTTATGGAGTGGAT 58.676 37.500 0.00 0.00 0.00 3.41
6516 6583 7.522542 TGTAAGTATTTGGGCCATATGTATGT 58.477 34.615 18.36 3.47 31.82 2.29
6535 6602 0.178978 TGTGGGCACTACCAATTGCA 60.179 50.000 0.00 0.00 43.34 4.08
6536 6603 0.243636 GTGGGCACTACCAATTGCAC 59.756 55.000 0.00 0.00 43.34 4.57
6629 6696 2.685106 TTGGTAAGGCCCAAACATCA 57.315 45.000 0.00 0.00 41.47 3.07
6740 6809 1.133976 GCATTGTCTGGGCATAGTCCT 60.134 52.381 0.00 0.00 0.00 3.85
6762 6831 3.240302 ACTAGTGTATGGGCATAGTCCC 58.760 50.000 0.00 0.00 46.73 4.46
6783 6852 2.497675 CACTAGTGTCTGGCCAGTGTAT 59.502 50.000 31.58 18.46 33.53 2.29
6799 6868 1.001120 TATGTCCAGGTCGAGCCCA 59.999 57.895 11.73 3.71 38.26 5.36
6824 6899 3.121676 TGCGTGCGTGTGTGTGTT 61.122 55.556 0.00 0.00 0.00 3.32
6825 6900 2.647481 GCGTGCGTGTGTGTGTTG 60.647 61.111 0.00 0.00 0.00 3.33
6843 6947 0.830444 TGGTGGGTCTGTTAGCGAGT 60.830 55.000 0.00 0.00 0.00 4.18
6881 6985 2.357034 TTGCCCAGTCGAGTTCGC 60.357 61.111 0.00 0.00 39.60 4.70
6885 6989 2.483745 CCAGTCGAGTTCGCGCTA 59.516 61.111 5.56 0.00 39.60 4.26
6970 7081 1.132527 TCTCCCTCCTTCCTTGGTTCA 60.133 52.381 0.00 0.00 0.00 3.18
7015 7126 2.119655 GGCGAGGGCGACTAGAGAA 61.120 63.158 0.00 0.00 43.91 2.87
7086 7197 3.727673 CGTGGAAATATTCAGTTGGCACG 60.728 47.826 0.00 0.00 33.83 5.34
7115 7226 7.445402 ACATGTATCACAGCCCAAAATATACTC 59.555 37.037 0.00 0.00 0.00 2.59
7119 7230 5.815581 TCACAGCCCAAAATATACTCAAGT 58.184 37.500 0.00 0.00 0.00 3.16
7120 7231 5.647658 TCACAGCCCAAAATATACTCAAGTG 59.352 40.000 0.00 0.00 0.00 3.16
7123 7234 6.891908 ACAGCCCAAAATATACTCAAGTGAAT 59.108 34.615 0.00 0.00 0.00 2.57
7137 7252 6.698766 ACTCAAGTGAATTTGCATTTCTTGTC 59.301 34.615 10.27 1.56 36.74 3.18
7172 7287 5.822584 CTTTTCAAGCCCACGTATTTTTC 57.177 39.130 0.00 0.00 0.00 2.29
7188 7303 6.183359 CGTATTTTTCTTGTCTGCAATTTCGG 60.183 38.462 0.00 0.00 33.65 4.30
7191 7306 2.161855 TCTTGTCTGCAATTTCGGCAT 58.838 42.857 0.00 0.00 41.06 4.40
7288 7404 1.021390 AGCCCTGAAGTTCGCGAATG 61.021 55.000 26.23 12.37 0.00 2.67
7451 7567 2.509336 CTAGCGTTGGCCTGTCGG 60.509 66.667 3.32 0.00 41.24 4.79
7580 7700 0.800012 GCGAGTTGCGGTCCAATTTA 59.200 50.000 0.00 0.00 41.29 1.40
7585 7705 4.473199 GAGTTGCGGTCCAATTTAACTTC 58.527 43.478 0.00 0.00 35.55 3.01
7589 7709 3.751175 TGCGGTCCAATTTAACTTCTGAG 59.249 43.478 0.00 0.00 0.00 3.35
7594 7714 7.148306 GCGGTCCAATTTAACTTCTGAGATTTA 60.148 37.037 0.00 0.00 0.00 1.40
7615 7735 1.552337 TGTTTGGAGCCTCAGAGCTAG 59.448 52.381 0.00 0.00 45.15 3.42
7618 7738 2.828661 TGGAGCCTCAGAGCTAGTAA 57.171 50.000 0.00 0.00 45.15 2.24
7631 7751 8.007405 TCAGAGCTAGTAATTGCTGTGTAATA 57.993 34.615 19.52 2.14 46.39 0.98
7666 7789 2.472909 GCGGTTATCTGCTGGTGCC 61.473 63.158 0.00 0.00 42.20 5.01
7698 7822 3.016736 ACATTCGGGCTAACCATGAAAG 58.983 45.455 0.00 0.00 40.22 2.62
7721 7846 7.603180 AGGAGAAATTGGCTAGAAAAAGTTT 57.397 32.000 0.00 0.00 0.00 2.66
7730 7855 8.865590 TTGGCTAGAAAAAGTTTTATTGTGTC 57.134 30.769 0.24 0.00 0.00 3.67
7731 7856 8.001881 TGGCTAGAAAAAGTTTTATTGTGTCA 57.998 30.769 0.24 0.00 0.00 3.58
7732 7857 7.918562 TGGCTAGAAAAAGTTTTATTGTGTCAC 59.081 33.333 0.24 0.00 0.00 3.67
7733 7858 8.135529 GGCTAGAAAAAGTTTTATTGTGTCACT 58.864 33.333 0.24 0.00 0.00 3.41
7737 7862 8.739972 AGAAAAAGTTTTATTGTGTCACTCAGT 58.260 29.630 0.24 0.00 0.00 3.41
7738 7863 9.353999 GAAAAAGTTTTATTGTGTCACTCAGTT 57.646 29.630 0.24 0.00 0.00 3.16
7769 7895 7.854557 TTCAGTGAGAAATATGAATGAGGTG 57.145 36.000 0.00 0.00 32.05 4.00
7773 7899 6.989169 AGTGAGAAATATGAATGAGGTGCTAC 59.011 38.462 0.00 0.00 0.00 3.58
7828 7963 8.903820 GGACAAAACCTATATGCTGTCTAATTT 58.096 33.333 0.00 0.00 34.85 1.82
7836 7971 7.605691 CCTATATGCTGTCTAATTTTCTGGGAG 59.394 40.741 0.00 0.00 0.00 4.30
7838 7973 5.755409 TGCTGTCTAATTTTCTGGGAGTA 57.245 39.130 0.00 0.00 0.00 2.59
7842 7977 6.049955 TGTCTAATTTTCTGGGAGTACCTG 57.950 41.667 0.00 0.00 41.11 4.00
7843 7978 5.045869 TGTCTAATTTTCTGGGAGTACCTGG 60.046 44.000 0.00 0.00 41.11 4.45
7845 7980 5.970640 TCTAATTTTCTGGGAGTACCTGGAT 59.029 40.000 0.00 0.00 41.11 3.41
7881 8016 6.202188 CCTAACCATATTTTAGTAGCACGGTG 59.798 42.308 3.15 3.15 0.00 4.94
7885 8020 6.183361 ACCATATTTTAGTAGCACGGTGGTAT 60.183 38.462 21.39 13.29 34.71 2.73
7890 8025 5.762825 TTAGTAGCACGGTGGTATCTAAG 57.237 43.478 21.39 0.00 32.57 2.18
7895 8030 1.687123 CACGGTGGTATCTAAGGAGGG 59.313 57.143 0.00 0.00 0.00 4.30
7898 8033 0.033642 GTGGTATCTAAGGAGGGCGC 59.966 60.000 0.00 0.00 0.00 6.53
7916 11887 3.455619 CGCAGCACTAAAACTACCTTG 57.544 47.619 0.00 0.00 0.00 3.61
7917 11888 3.064207 CGCAGCACTAAAACTACCTTGA 58.936 45.455 0.00 0.00 0.00 3.02
7918 11889 3.684788 CGCAGCACTAAAACTACCTTGAT 59.315 43.478 0.00 0.00 0.00 2.57
7919 11890 4.436050 CGCAGCACTAAAACTACCTTGATG 60.436 45.833 0.00 0.00 0.00 3.07
7920 11891 4.455877 GCAGCACTAAAACTACCTTGATGT 59.544 41.667 0.00 0.00 0.00 3.06
7921 11892 5.617751 GCAGCACTAAAACTACCTTGATGTG 60.618 44.000 0.00 0.00 0.00 3.21
7922 11893 4.455877 AGCACTAAAACTACCTTGATGTGC 59.544 41.667 0.00 0.00 45.62 4.57
7923 11894 4.669197 GCACTAAAACTACCTTGATGTGCG 60.669 45.833 0.00 0.00 38.73 5.34
7924 11895 2.989422 AAAACTACCTTGATGTGCGC 57.011 45.000 0.00 0.00 0.00 6.09
7925 11896 1.165270 AAACTACCTTGATGTGCGCC 58.835 50.000 4.18 0.00 0.00 6.53
7940 11923 1.579429 CGCCGGAAGAAAACCCTTG 59.421 57.895 5.05 0.00 0.00 3.61
7941 11924 1.289066 GCCGGAAGAAAACCCTTGC 59.711 57.895 5.05 0.00 0.00 4.01
7943 11926 1.884928 GCCGGAAGAAAACCCTTGCTA 60.885 52.381 5.05 0.00 33.12 3.49
7944 11927 2.510613 CCGGAAGAAAACCCTTGCTAA 58.489 47.619 0.00 0.00 33.12 3.09
7945 11928 2.888414 CCGGAAGAAAACCCTTGCTAAA 59.112 45.455 0.00 0.00 33.12 1.85
7946 11929 3.319689 CCGGAAGAAAACCCTTGCTAAAA 59.680 43.478 0.00 0.00 33.12 1.52
7972 12015 7.658525 ATTGCCCAAGAATACATGAAACATA 57.341 32.000 0.00 0.00 0.00 2.29
7975 12018 8.759481 TGCCCAAGAATACATGAAACATATAA 57.241 30.769 0.00 0.00 0.00 0.98
7990 12033 8.404765 TGAAACATATAACATGTTGCGAATCAT 58.595 29.630 21.42 7.13 39.78 2.45
7992 12035 9.585099 AAACATATAACATGTTGCGAATCATTT 57.415 25.926 21.42 8.29 40.94 2.32
7997 12040 6.932901 AACATGTTGCGAATCATTTACAAG 57.067 33.333 11.07 0.00 0.00 3.16
7998 12041 6.012658 ACATGTTGCGAATCATTTACAAGT 57.987 33.333 0.00 0.00 0.00 3.16
8000 12043 6.363088 ACATGTTGCGAATCATTTACAAGTTG 59.637 34.615 0.00 0.00 0.00 3.16
8003 12046 6.416455 TGTTGCGAATCATTTACAAGTTGAAC 59.584 34.615 10.54 0.00 0.00 3.18
8004 12047 6.312399 TGCGAATCATTTACAAGTTGAACT 57.688 33.333 10.54 0.00 0.00 3.01
8006 12049 6.204688 TGCGAATCATTTACAAGTTGAACTCT 59.795 34.615 10.54 0.00 0.00 3.24
8007 12050 7.078228 GCGAATCATTTACAAGTTGAACTCTT 58.922 34.615 10.54 0.00 0.00 2.85
8008 12051 8.227791 GCGAATCATTTACAAGTTGAACTCTTA 58.772 33.333 10.54 0.00 0.00 2.10
8009 12052 9.746711 CGAATCATTTACAAGTTGAACTCTTAG 57.253 33.333 10.54 0.00 0.00 2.18
8073 12120 2.617274 GCTGAAACGAGGTGGCACC 61.617 63.158 29.32 29.32 38.99 5.01
8098 12145 1.153901 GCGCTGTTACGGCTACAGA 60.154 57.895 14.59 0.00 44.52 3.41
8104 12151 2.860735 CTGTTACGGCTACAGATCAAGC 59.139 50.000 7.76 0.52 44.52 4.01
8126 12173 3.931907 TGCAAGCAGGATAAGGTGTAT 57.068 42.857 0.00 0.00 0.00 2.29
8153 12200 5.704354 TCATCCCCCTAGTTTATACGTACA 58.296 41.667 0.00 0.00 0.00 2.90
8154 12201 5.536161 TCATCCCCCTAGTTTATACGTACAC 59.464 44.000 0.00 0.00 0.00 2.90
8164 12211 7.693969 AGTTTATACGTACACTACCTTGTCT 57.306 36.000 0.00 0.00 0.00 3.41
8201 12248 2.672874 TGCATTCGAAAGGACTGAATCG 59.327 45.455 0.00 0.00 36.67 3.34
8202 12249 2.930040 GCATTCGAAAGGACTGAATCGA 59.070 45.455 0.00 0.00 42.01 3.59
8293 12340 2.877360 TAGACGTGAATCCGCCGTGC 62.877 60.000 0.00 0.00 34.51 5.34
8317 12364 0.181350 AGGAATGTTGGCCGAGATCC 59.819 55.000 2.43 6.80 0.00 3.36
8320 12367 3.757248 ATGTTGGCCGAGATCCCGC 62.757 63.158 0.00 0.00 0.00 6.13
8354 12401 2.641277 GCCTAGCCTAGCCTAGCCG 61.641 68.421 2.10 0.00 34.74 5.52
8355 12402 1.979693 CCTAGCCTAGCCTAGCCGG 60.980 68.421 2.10 0.00 34.74 6.13
8356 12403 1.228613 CTAGCCTAGCCTAGCCGGT 60.229 63.158 1.90 0.00 34.25 5.28
8357 12404 0.037877 CTAGCCTAGCCTAGCCGGTA 59.962 60.000 1.90 0.00 34.25 4.02
8358 12405 0.037877 TAGCCTAGCCTAGCCGGTAG 59.962 60.000 1.90 3.63 34.25 3.18
8359 12406 1.228490 GCCTAGCCTAGCCGGTAGA 60.228 63.158 1.90 0.00 34.25 2.59
8360 12407 1.245376 GCCTAGCCTAGCCGGTAGAG 61.245 65.000 1.90 0.00 34.25 2.43
8361 12408 1.245376 CCTAGCCTAGCCGGTAGAGC 61.245 65.000 1.90 9.30 34.25 4.09
8362 12409 1.228490 TAGCCTAGCCGGTAGAGCC 60.228 63.158 1.90 0.00 34.25 4.70
8363 12410 2.710237 TAGCCTAGCCGGTAGAGCCC 62.710 65.000 1.90 0.00 34.25 5.19
8365 12412 3.979739 CTAGCCGGTAGAGCCCGC 61.980 72.222 1.90 0.00 46.71 6.13
8369 12416 4.832608 CCGGTAGAGCCCGCCAAC 62.833 72.222 0.00 0.00 46.71 3.77
8375 12422 4.547367 GAGCCCGCCAACGCCTAT 62.547 66.667 0.00 0.00 38.22 2.57
8376 12423 4.856801 AGCCCGCCAACGCCTATG 62.857 66.667 0.00 0.00 38.22 2.23
8379 12426 4.856801 CCGCCAACGCCTATGCCT 62.857 66.667 0.00 0.00 38.22 4.75
8380 12427 2.824041 CGCCAACGCCTATGCCTT 60.824 61.111 0.00 0.00 0.00 4.35
8381 12428 2.823829 CGCCAACGCCTATGCCTTC 61.824 63.158 0.00 0.00 0.00 3.46
8382 12429 1.452108 GCCAACGCCTATGCCTTCT 60.452 57.895 0.00 0.00 0.00 2.85
8383 12430 1.440145 GCCAACGCCTATGCCTTCTC 61.440 60.000 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.539022 CGTAGTCTTTCACATGCCTATGTATAG 59.461 40.741 0.00 0.00 45.53 1.31
35 36 3.449227 TCCGTAGCTCCGCCACTG 61.449 66.667 0.00 0.00 0.00 3.66
36 37 3.450115 GTCCGTAGCTCCGCCACT 61.450 66.667 0.00 0.00 0.00 4.00
37 38 4.849329 CGTCCGTAGCTCCGCCAC 62.849 72.222 0.00 0.00 0.00 5.01
40 41 2.550101 ATACCGTCCGTAGCTCCGC 61.550 63.158 0.00 0.00 0.00 5.54
41 42 1.281960 CATACCGTCCGTAGCTCCG 59.718 63.158 0.00 0.00 0.00 4.63
42 43 1.007618 GCATACCGTCCGTAGCTCC 60.008 63.158 0.00 0.00 0.00 4.70
43 44 0.317938 CAGCATACCGTCCGTAGCTC 60.318 60.000 0.00 0.00 32.48 4.09
44 45 1.734137 CAGCATACCGTCCGTAGCT 59.266 57.895 0.00 0.00 34.03 3.32
45 46 1.299926 CCAGCATACCGTCCGTAGC 60.300 63.158 0.00 0.00 0.00 3.58
46 47 1.362717 CCCAGCATACCGTCCGTAG 59.637 63.158 0.00 0.00 0.00 3.51
47 48 2.788640 GCCCAGCATACCGTCCGTA 61.789 63.158 0.00 0.00 0.00 4.02
48 49 4.157120 GCCCAGCATACCGTCCGT 62.157 66.667 0.00 0.00 0.00 4.69
50 51 4.910585 CCGCCCAGCATACCGTCC 62.911 72.222 0.00 0.00 0.00 4.79
51 52 4.910585 CCCGCCCAGCATACCGTC 62.911 72.222 0.00 0.00 0.00 4.79
61 62 4.757355 CCAAATCTGGCCCGCCCA 62.757 66.667 0.00 0.00 42.79 5.36
69 70 3.633986 CCCTTTAGCTTAGCCAAATCTGG 59.366 47.826 0.00 0.00 46.65 3.86
70 71 4.526970 TCCCTTTAGCTTAGCCAAATCTG 58.473 43.478 0.00 0.00 0.00 2.90
71 72 4.862641 TCCCTTTAGCTTAGCCAAATCT 57.137 40.909 0.00 0.00 0.00 2.40
72 73 4.202060 GCTTCCCTTTAGCTTAGCCAAATC 60.202 45.833 0.00 0.00 35.74 2.17
73 74 3.701542 GCTTCCCTTTAGCTTAGCCAAAT 59.298 43.478 0.00 0.00 35.74 2.32
74 75 3.089284 GCTTCCCTTTAGCTTAGCCAAA 58.911 45.455 0.00 0.00 35.74 3.28
75 76 2.620627 GGCTTCCCTTTAGCTTAGCCAA 60.621 50.000 0.00 0.00 45.73 4.52
76 77 1.064685 GGCTTCCCTTTAGCTTAGCCA 60.065 52.381 0.00 0.00 45.73 4.75
77 78 1.213182 AGGCTTCCCTTTAGCTTAGCC 59.787 52.381 0.00 0.00 46.57 3.93
78 79 2.566913 GAGGCTTCCCTTTAGCTTAGC 58.433 52.381 0.00 0.00 43.12 3.09
79 80 2.505819 TGGAGGCTTCCCTTTAGCTTAG 59.494 50.000 13.07 0.00 43.12 2.18
80 81 2.557869 TGGAGGCTTCCCTTTAGCTTA 58.442 47.619 13.07 0.00 43.12 3.09
81 82 1.372501 TGGAGGCTTCCCTTTAGCTT 58.627 50.000 13.07 0.00 43.12 3.74
82 83 1.372501 TTGGAGGCTTCCCTTTAGCT 58.627 50.000 13.07 0.00 43.12 3.32
83 84 1.819288 GTTTGGAGGCTTCCCTTTAGC 59.181 52.381 13.07 0.00 43.12 3.09
84 85 3.441500 AGTTTGGAGGCTTCCCTTTAG 57.558 47.619 13.07 0.00 43.12 1.85
85 86 3.895704 AAGTTTGGAGGCTTCCCTTTA 57.104 42.857 13.07 0.00 43.12 1.85
86 87 2.775490 AAGTTTGGAGGCTTCCCTTT 57.225 45.000 13.07 0.00 43.12 3.11
87 88 2.775490 AAAGTTTGGAGGCTTCCCTT 57.225 45.000 13.07 5.73 43.12 3.95
88 89 2.225041 GGTAAAGTTTGGAGGCTTCCCT 60.225 50.000 13.07 0.00 46.74 4.20
89 90 2.168496 GGTAAAGTTTGGAGGCTTCCC 58.832 52.381 13.07 0.00 43.33 3.97
90 91 3.156288 AGGTAAAGTTTGGAGGCTTCC 57.844 47.619 8.18 8.18 44.31 3.46
91 92 3.889538 ACAAGGTAAAGTTTGGAGGCTTC 59.110 43.478 0.00 0.00 0.00 3.86
92 93 3.910989 ACAAGGTAAAGTTTGGAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
93 94 3.595190 ACAAGGTAAAGTTTGGAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
94 95 4.368315 CAAACAAGGTAAAGTTTGGAGGC 58.632 43.478 9.49 0.00 46.57 4.70
100 101 9.884636 AAAATTAGCTCAAACAAGGTAAAGTTT 57.115 25.926 0.00 0.00 41.19 2.66
101 102 9.313118 CAAAATTAGCTCAAACAAGGTAAAGTT 57.687 29.630 0.00 0.00 41.19 2.66
102 103 7.438160 GCAAAATTAGCTCAAACAAGGTAAAGT 59.562 33.333 0.00 0.00 41.19 2.66
103 104 7.095649 GGCAAAATTAGCTCAAACAAGGTAAAG 60.096 37.037 0.00 0.00 41.19 1.85
104 105 6.704050 GGCAAAATTAGCTCAAACAAGGTAAA 59.296 34.615 0.00 0.00 41.19 2.01
105 106 6.183360 TGGCAAAATTAGCTCAAACAAGGTAA 60.183 34.615 0.00 0.00 41.83 2.85
106 107 5.303078 TGGCAAAATTAGCTCAAACAAGGTA 59.697 36.000 0.00 0.00 0.00 3.08
107 108 4.100808 TGGCAAAATTAGCTCAAACAAGGT 59.899 37.500 0.00 0.00 0.00 3.50
108 109 4.630111 TGGCAAAATTAGCTCAAACAAGG 58.370 39.130 0.00 0.00 0.00 3.61
109 110 5.927689 TCATGGCAAAATTAGCTCAAACAAG 59.072 36.000 0.00 0.00 0.00 3.16
110 111 5.695816 GTCATGGCAAAATTAGCTCAAACAA 59.304 36.000 0.00 0.00 0.00 2.83
111 112 5.221402 TGTCATGGCAAAATTAGCTCAAACA 60.221 36.000 0.00 6.06 0.00 2.83
112 113 5.119125 GTGTCATGGCAAAATTAGCTCAAAC 59.881 40.000 0.00 4.26 0.00 2.93
113 114 5.229423 GTGTCATGGCAAAATTAGCTCAAA 58.771 37.500 0.00 0.00 0.00 2.69
114 115 4.321899 GGTGTCATGGCAAAATTAGCTCAA 60.322 41.667 0.00 0.00 0.00 3.02
115 116 3.193267 GGTGTCATGGCAAAATTAGCTCA 59.807 43.478 0.00 0.00 0.00 4.26
116 117 3.445096 AGGTGTCATGGCAAAATTAGCTC 59.555 43.478 0.00 0.00 0.00 4.09
117 118 3.434309 AGGTGTCATGGCAAAATTAGCT 58.566 40.909 0.00 0.00 0.00 3.32
118 119 3.874392 AGGTGTCATGGCAAAATTAGC 57.126 42.857 0.00 0.00 0.00 3.09
119 120 5.647658 TCAGTAGGTGTCATGGCAAAATTAG 59.352 40.000 0.00 0.00 0.00 1.73
120 121 5.565509 TCAGTAGGTGTCATGGCAAAATTA 58.434 37.500 0.00 0.00 0.00 1.40
121 122 4.406456 TCAGTAGGTGTCATGGCAAAATT 58.594 39.130 0.00 0.00 0.00 1.82
122 123 4.032960 TCAGTAGGTGTCATGGCAAAAT 57.967 40.909 0.00 0.00 0.00 1.82
123 124 3.500448 TCAGTAGGTGTCATGGCAAAA 57.500 42.857 0.00 0.00 0.00 2.44
124 125 3.719268 ATCAGTAGGTGTCATGGCAAA 57.281 42.857 0.00 0.00 0.00 3.68
125 126 3.719268 AATCAGTAGGTGTCATGGCAA 57.281 42.857 0.00 0.00 0.00 4.52
126 127 3.719268 AAATCAGTAGGTGTCATGGCA 57.281 42.857 0.00 0.00 0.00 4.92
127 128 4.335594 GGTTAAATCAGTAGGTGTCATGGC 59.664 45.833 0.00 0.00 0.00 4.40
128 129 5.496556 TGGTTAAATCAGTAGGTGTCATGG 58.503 41.667 0.00 0.00 0.00 3.66
129 130 6.599244 ACATGGTTAAATCAGTAGGTGTCATG 59.401 38.462 0.00 0.00 34.91 3.07
130 131 6.721318 ACATGGTTAAATCAGTAGGTGTCAT 58.279 36.000 0.00 0.00 0.00 3.06
131 132 6.121776 ACATGGTTAAATCAGTAGGTGTCA 57.878 37.500 0.00 0.00 0.00 3.58
132 133 8.612619 CAATACATGGTTAAATCAGTAGGTGTC 58.387 37.037 0.00 0.00 0.00 3.67
133 134 7.556275 CCAATACATGGTTAAATCAGTAGGTGT 59.444 37.037 0.00 0.00 44.85 4.16
134 135 7.930217 CCAATACATGGTTAAATCAGTAGGTG 58.070 38.462 0.00 0.00 44.85 4.00
150 151 2.123939 TGGCCCGCCCAATACATG 60.124 61.111 0.00 0.00 41.82 3.21
159 160 3.995506 AACTGTGCTATGGCCCGCC 62.996 63.158 0.00 0.00 37.74 6.13
160 161 1.595093 AAAACTGTGCTATGGCCCGC 61.595 55.000 0.00 0.09 37.74 6.13
161 162 0.171007 CAAAACTGTGCTATGGCCCG 59.829 55.000 0.00 0.00 37.74 6.13
162 163 0.108662 GCAAAACTGTGCTATGGCCC 60.109 55.000 0.00 0.00 41.51 5.80
163 164 0.108662 GGCAAAACTGTGCTATGGCC 60.109 55.000 0.00 0.00 44.31 5.36
164 165 0.890683 AGGCAAAACTGTGCTATGGC 59.109 50.000 0.00 0.00 44.31 4.40
165 166 2.642139 CAGGCAAAACTGTGCTATGG 57.358 50.000 0.00 0.00 44.31 2.74
180 181 3.418714 GCAGAGCTATGCACAGGC 58.581 61.111 27.68 0.00 45.77 4.85
186 187 3.418714 GCAGTGGCAGAGCTATGC 58.581 61.111 24.98 24.98 45.74 3.14
196 197 4.394712 AGCCTACCGTGCAGTGGC 62.395 66.667 4.82 7.84 43.52 5.01
197 198 2.434884 CAGCCTACCGTGCAGTGG 60.435 66.667 3.36 3.36 0.00 4.00
198 199 3.121030 GCAGCCTACCGTGCAGTG 61.121 66.667 0.00 0.00 39.62 3.66
199 200 3.625897 TGCAGCCTACCGTGCAGT 61.626 61.111 0.00 0.00 44.70 4.40
202 203 3.264897 CGATGCAGCCTACCGTGC 61.265 66.667 0.00 0.00 40.29 5.34
203 204 2.586079 CCGATGCAGCCTACCGTG 60.586 66.667 0.00 0.00 0.00 4.94
204 205 4.530857 GCCGATGCAGCCTACCGT 62.531 66.667 0.00 0.00 37.47 4.83
205 206 4.529219 TGCCGATGCAGCCTACCG 62.529 66.667 0.00 0.00 44.23 4.02
225 226 0.677731 ACGTCCCTGACCATGCATTG 60.678 55.000 0.00 0.00 0.00 2.82
357 358 7.718272 TGCCGTAATAATGGTCACTATAAAC 57.282 36.000 0.00 0.00 33.88 2.01
358 359 8.911918 ATTGCCGTAATAATGGTCACTATAAA 57.088 30.769 0.00 0.00 33.88 1.40
364 365 3.805422 TCGATTGCCGTAATAATGGTCAC 59.195 43.478 0.00 0.00 39.75 3.67
386 387 0.905337 AGCAACTCTAGGGGAGCGTT 60.905 55.000 0.00 0.00 45.48 4.84
428 434 8.375493 TGAAGTTACTCCCATTGTAGATAGTT 57.625 34.615 0.00 0.00 0.00 2.24
433 439 4.530553 TGCTGAAGTTACTCCCATTGTAGA 59.469 41.667 0.00 0.00 0.00 2.59
435 441 4.286032 ACTGCTGAAGTTACTCCCATTGTA 59.714 41.667 0.00 0.00 34.57 2.41
439 445 4.286032 TGTTACTGCTGAAGTTACTCCCAT 59.714 41.667 6.50 0.00 38.87 4.00
477 483 7.436118 ACTCATTGTCACATAAGCAAATTTGT 58.564 30.769 19.03 3.40 0.00 2.83
609 626 6.018669 GCTAGCCACAGTGAAGAATAACATAC 60.019 42.308 2.29 0.00 0.00 2.39
617 634 1.352083 AGGCTAGCCACAGTGAAGAA 58.648 50.000 34.70 0.00 38.92 2.52
621 638 2.231716 TCTTAGGCTAGCCACAGTGA 57.768 50.000 34.70 20.68 38.92 3.41
622 639 3.201290 CATTCTTAGGCTAGCCACAGTG 58.799 50.000 34.70 20.11 38.92 3.66
623 640 2.840651 ACATTCTTAGGCTAGCCACAGT 59.159 45.455 34.70 17.23 38.92 3.55
624 641 3.550437 ACATTCTTAGGCTAGCCACAG 57.450 47.619 34.70 27.22 38.92 3.66
625 642 3.263170 TCAACATTCTTAGGCTAGCCACA 59.737 43.478 34.70 19.67 38.92 4.17
626 643 3.873910 TCAACATTCTTAGGCTAGCCAC 58.126 45.455 34.70 9.86 38.92 5.01
627 644 4.568072 TTCAACATTCTTAGGCTAGCCA 57.432 40.909 34.70 18.26 38.92 4.75
628 645 4.700213 TGTTTCAACATTCTTAGGCTAGCC 59.300 41.667 27.19 27.19 33.17 3.93
629 646 5.880054 TGTTTCAACATTCTTAGGCTAGC 57.120 39.130 6.04 6.04 33.17 3.42
759 779 2.422235 CGTGAGACTAGGGAGGATGTCT 60.422 54.545 0.00 0.00 41.76 3.41
760 780 1.950909 CGTGAGACTAGGGAGGATGTC 59.049 57.143 0.00 0.00 0.00 3.06
1083 1103 1.693103 GGGGAGGGGTCGGAAGAAT 60.693 63.158 0.00 0.00 45.01 2.40
1160 1180 3.926527 TGCACTCGTAACTGAAAGCATAG 59.073 43.478 0.00 0.00 37.60 2.23
1297 1318 2.202797 ATGGTAGTGAGCAGCGCG 60.203 61.111 0.00 0.00 36.28 6.86
1300 1321 2.969628 ACTACATGGTAGTGAGCAGC 57.030 50.000 8.16 0.00 36.28 5.25
1338 1359 2.025418 GCGTCCACCACACCTAACG 61.025 63.158 0.00 0.00 0.00 3.18
1438 1469 0.388520 GGGCGAAAAAGCATGTGTCC 60.389 55.000 0.00 0.00 39.27 4.02
1442 1473 1.039856 ACAAGGGCGAAAAAGCATGT 58.960 45.000 0.00 0.00 39.27 3.21
1451 1482 0.400213 AGTCCATTCACAAGGGCGAA 59.600 50.000 0.00 0.00 33.85 4.70
1452 1483 0.036388 GAGTCCATTCACAAGGGCGA 60.036 55.000 0.00 0.00 33.85 5.54
1454 1485 0.681243 GGGAGTCCATTCACAAGGGC 60.681 60.000 12.30 0.00 30.92 5.19
1473 1504 4.715983 GCATGCGTTTATGCCTGG 57.284 55.556 0.00 0.00 45.93 4.45
1486 1517 5.107760 CCAAAAGAACTGTTCAAATCGCATG 60.108 40.000 21.50 8.93 0.00 4.06
1620 1655 7.339466 ACCAACTTCCAAATATATGACAGGAAC 59.661 37.037 0.00 0.00 32.24 3.62
1756 1798 1.568504 TTCCTGCCTACACTACCAGG 58.431 55.000 0.00 0.00 44.84 4.45
1873 1919 3.806625 ACAGAATATGCATGCCAAACC 57.193 42.857 16.68 1.66 0.00 3.27
2045 2091 2.690497 TCATTTCGGTCCACAAAAAGCA 59.310 40.909 0.00 0.00 0.00 3.91
2499 2547 9.490663 GTATTTACACATCCTTGAAATTTCTCG 57.509 33.333 18.64 9.48 0.00 4.04
2628 2676 4.339814 TGGGACGAAAAGTGCAATTTAGTT 59.660 37.500 13.16 0.00 43.57 2.24
2664 2712 2.256117 ACTTTTTCTGAGACCCACCG 57.744 50.000 0.00 0.00 0.00 4.94
2751 2800 1.732405 GCCTAAAATGCTGCACGGAAC 60.732 52.381 3.57 0.00 0.00 3.62
2752 2801 0.525761 GCCTAAAATGCTGCACGGAA 59.474 50.000 3.57 0.00 0.00 4.30
2753 2802 0.607762 TGCCTAAAATGCTGCACGGA 60.608 50.000 3.57 0.00 0.00 4.69
2754 2803 0.456653 GTGCCTAAAATGCTGCACGG 60.457 55.000 3.57 1.93 43.83 4.94
2755 2804 3.020102 GTGCCTAAAATGCTGCACG 57.980 52.632 3.57 0.00 43.83 5.34
2758 2807 3.040409 GCAGTGCCTAAAATGCTGC 57.960 52.632 2.85 0.00 44.24 5.25
2759 2808 2.164827 TCATGCAGTGCCTAAAATGCTG 59.835 45.455 13.72 0.00 39.42 4.41
2760 2809 2.426024 CTCATGCAGTGCCTAAAATGCT 59.574 45.455 13.72 0.00 39.42 3.79
2761 2810 2.165030 ACTCATGCAGTGCCTAAAATGC 59.835 45.455 13.72 0.00 39.14 3.56
2762 2811 4.877823 TCTACTCATGCAGTGCCTAAAATG 59.122 41.667 13.72 9.31 36.43 2.32
2763 2812 5.102953 TCTACTCATGCAGTGCCTAAAAT 57.897 39.130 13.72 0.00 36.43 1.82
2764 2813 4.551702 TCTACTCATGCAGTGCCTAAAA 57.448 40.909 13.72 0.00 36.43 1.52
2765 2814 4.551702 TTCTACTCATGCAGTGCCTAAA 57.448 40.909 13.72 0.00 36.43 1.85
2766 2815 4.020218 AGTTTCTACTCATGCAGTGCCTAA 60.020 41.667 13.72 0.00 36.43 2.69
2767 2816 3.515502 AGTTTCTACTCATGCAGTGCCTA 59.484 43.478 13.72 0.00 36.43 3.93
2768 2817 2.304180 AGTTTCTACTCATGCAGTGCCT 59.696 45.455 13.72 0.00 36.43 4.75
2769 2818 2.417933 CAGTTTCTACTCATGCAGTGCC 59.582 50.000 13.72 0.00 36.43 5.01
2770 2819 2.159599 GCAGTTTCTACTCATGCAGTGC 60.160 50.000 8.58 8.58 36.43 4.40
2771 2820 3.069289 TGCAGTTTCTACTCATGCAGTG 58.931 45.455 0.00 0.00 36.43 3.66
2772 2821 3.407424 TGCAGTTTCTACTCATGCAGT 57.593 42.857 0.00 0.00 39.41 4.40
2773 2822 4.201891 GGAATGCAGTTTCTACTCATGCAG 60.202 45.833 4.40 0.00 35.21 4.41
2774 2823 3.691118 GGAATGCAGTTTCTACTCATGCA 59.309 43.478 0.16 0.16 35.90 3.96
2775 2824 3.691118 TGGAATGCAGTTTCTACTCATGC 59.309 43.478 0.00 0.00 30.26 4.06
2776 2825 4.940046 ACTGGAATGCAGTTTCTACTCATG 59.060 41.667 0.28 0.00 30.26 3.07
2777 2826 4.940046 CACTGGAATGCAGTTTCTACTCAT 59.060 41.667 4.20 0.00 30.26 2.90
2778 2827 4.318332 CACTGGAATGCAGTTTCTACTCA 58.682 43.478 4.20 0.00 30.26 3.41
2779 2828 3.126000 GCACTGGAATGCAGTTTCTACTC 59.874 47.826 4.20 0.00 45.39 2.59
2780 2829 3.077359 GCACTGGAATGCAGTTTCTACT 58.923 45.455 4.20 0.00 45.39 2.57
2781 2830 3.477899 GCACTGGAATGCAGTTTCTAC 57.522 47.619 4.20 0.00 45.39 2.59
2798 2847 0.451783 CAGAACTTTATGCGGGGCAC 59.548 55.000 0.00 0.00 43.04 5.01
2801 2850 0.451783 GCACAGAACTTTATGCGGGG 59.548 55.000 0.00 0.00 0.00 5.73
3000 3049 0.687354 TCTTGGCTCTGGTTCCACTC 59.313 55.000 0.00 0.00 30.97 3.51
3544 3594 7.117523 GTGGTAGAGAAGCATAGATATTGCAAG 59.882 40.741 4.94 0.00 42.62 4.01
3918 3968 2.681848 CTCCTCTGCACTTGCCTATTTG 59.318 50.000 0.00 0.00 41.18 2.32
3948 3998 2.025037 TGGATCCTCCCCATTTGTCAAG 60.025 50.000 14.23 0.00 35.03 3.02
4285 4335 2.555757 CTCTGGTTTTCCTCCTGCTTTG 59.444 50.000 0.00 0.00 41.38 2.77
4343 4393 2.959421 AAGAGAGGTCTCCCAAGGAT 57.041 50.000 3.26 0.00 43.88 3.24
4344 4394 2.541466 GAAAGAGAGGTCTCCCAAGGA 58.459 52.381 3.26 0.00 43.88 3.36
4679 4733 4.679373 ACTCCATATTCTGGCAGTACTG 57.321 45.455 18.93 18.93 45.52 2.74
4718 4772 1.279558 ACCGAGCTCACTCTCTACTCA 59.720 52.381 15.40 0.00 41.09 3.41
4767 4821 6.049149 TCATTTCCTACTTCCATCGACAATC 58.951 40.000 0.00 0.00 0.00 2.67
4878 4934 3.387397 GAGCCCAAAATATTCAGCATGC 58.613 45.455 10.51 10.51 34.76 4.06
4919 4975 3.349006 CAGCACCAGTCGCACACC 61.349 66.667 0.00 0.00 0.00 4.16
5265 5321 3.360340 ACTTCAGCTGCTTGGCGC 61.360 61.111 9.47 0.00 37.29 6.53
5266 5322 2.559840 CACTTCAGCTGCTTGGCG 59.440 61.111 9.47 0.00 37.29 5.69
5267 5323 2.257676 GCACTTCAGCTGCTTGGC 59.742 61.111 9.47 6.67 0.00 4.52
5268 5324 4.076244 AGCACTTCAGCTGCTTGG 57.924 55.556 9.47 0.00 42.54 3.61
5357 5413 3.117776 AGCACATTCATGGCTTCAGGATA 60.118 43.478 0.00 0.00 32.79 2.59
5449 5505 3.407698 ACATCACGGCTAACATTGAACA 58.592 40.909 0.00 0.00 0.00 3.18
5458 5514 5.759506 TTCAAGAAAAACATCACGGCTAA 57.240 34.783 0.00 0.00 0.00 3.09
5463 5519 9.198065 GACAAAATTTTCAAGAAAAACATCACG 57.802 29.630 11.53 1.55 42.71 4.35
5483 5539 6.609616 ACCTGTTTAAAATCCTCAGGACAAAA 59.390 34.615 22.14 0.00 45.76 2.44
5530 5592 7.074494 AGGCTTCCACCCCACTTTATATATAAA 59.926 37.037 15.47 15.47 0.00 1.40
5531 5593 6.564927 AGGCTTCCACCCCACTTTATATATAA 59.435 38.462 0.81 0.81 0.00 0.98
5532 5594 6.095680 AGGCTTCCACCCCACTTTATATATA 58.904 40.000 0.00 0.00 0.00 0.86
5533 5595 4.920129 AGGCTTCCACCCCACTTTATATAT 59.080 41.667 0.00 0.00 0.00 0.86
5534 5596 4.312487 AGGCTTCCACCCCACTTTATATA 58.688 43.478 0.00 0.00 0.00 0.86
5561 5623 0.393820 GACCGGACCTGTTGTTACCA 59.606 55.000 9.46 0.00 0.00 3.25
5575 5637 4.008330 TCTGTACAGTTTCTCTAGACCGG 58.992 47.826 21.99 0.00 0.00 5.28
5713 5775 1.651987 CGTCCACTTGTGTTGTGACT 58.348 50.000 0.00 0.00 37.60 3.41
5731 5796 1.732259 GTGATAACTGTGTCCCAAGCG 59.268 52.381 0.00 0.00 0.00 4.68
5803 5869 3.498397 CACAAAGCCGAGTATGAAAGTGT 59.502 43.478 0.00 0.00 0.00 3.55
5914 5980 1.422531 AAATTTCTGCAGCAACCCCA 58.577 45.000 9.47 0.00 0.00 4.96
6037 6103 9.573166 TTCCAGAGAATTTGATACAGAAAAGAA 57.427 29.630 0.00 0.00 0.00 2.52
6038 6104 9.745018 ATTCCAGAGAATTTGATACAGAAAAGA 57.255 29.630 0.00 0.00 39.83 2.52
6039 6105 9.784680 CATTCCAGAGAATTTGATACAGAAAAG 57.215 33.333 0.00 0.00 40.89 2.27
6040 6106 8.742777 CCATTCCAGAGAATTTGATACAGAAAA 58.257 33.333 0.00 0.00 40.89 2.29
6041 6107 7.148018 GCCATTCCAGAGAATTTGATACAGAAA 60.148 37.037 0.00 0.00 40.89 2.52
6059 6125 1.204467 GCAAAAGATTCCGCCATTCCA 59.796 47.619 0.00 0.00 0.00 3.53
6067 6133 8.450964 TCTTTTTATGAGTAGCAAAAGATTCCG 58.549 33.333 2.53 0.00 39.30 4.30
6277 6343 6.936900 TGATATAAATGCAGGGAAGTAAGAGC 59.063 38.462 0.00 0.00 0.00 4.09
6453 6520 5.944007 ACAAAATAACTAGGTGTCCATCCAC 59.056 40.000 0.00 0.00 34.52 4.02
6458 6525 8.595421 TGTGTATACAAAATAACTAGGTGTCCA 58.405 33.333 7.25 0.00 32.88 4.02
6516 6583 0.178978 TGCAATTGGTAGTGCCCACA 60.179 50.000 7.72 0.00 44.40 4.17
6535 6602 8.472413 AGCTTCATTTATCAAATTAGCATGTGT 58.528 29.630 13.62 0.00 37.94 3.72
6536 6603 8.867112 AGCTTCATTTATCAAATTAGCATGTG 57.133 30.769 13.62 0.00 37.94 3.21
6629 6696 4.558496 CGCCAACATAACACTTTCATGGTT 60.558 41.667 0.00 0.00 0.00 3.67
6762 6831 0.681733 ACACTGGCCAGACACTAGTG 59.318 55.000 39.19 26.09 43.20 2.74
6783 6852 2.284625 ATGGGCTCGACCTGGACA 60.285 61.111 0.00 0.00 39.10 4.02
6824 6899 0.830444 ACTCGCTAACAGACCCACCA 60.830 55.000 0.00 0.00 0.00 4.17
6825 6900 0.389948 CACTCGCTAACAGACCCACC 60.390 60.000 0.00 0.00 0.00 4.61
6843 6947 2.845752 GATTACACAGGGCCGCGTCA 62.846 60.000 4.92 0.00 0.00 4.35
6881 6985 1.369625 ACGGCAATTTTCCTCTAGCG 58.630 50.000 0.00 0.00 0.00 4.26
6885 6989 1.535462 CACGAACGGCAATTTTCCTCT 59.465 47.619 0.00 0.00 0.00 3.69
6917 7021 1.002624 GGGAGATTTCCGGCACACA 60.003 57.895 0.00 0.00 45.04 3.72
6921 7025 1.299648 CACAGGGAGATTTCCGGCA 59.700 57.895 0.00 0.00 45.04 5.69
6970 7081 1.963338 GTTGCACGCTCTCTGGCTT 60.963 57.895 0.00 0.00 0.00 4.35
7086 7197 2.401583 TGGGCTGTGATACATGTGTC 57.598 50.000 15.13 15.13 0.00 3.67
7115 7226 6.831727 TGACAAGAAATGCAAATTCACTTG 57.168 33.333 15.48 14.35 39.02 3.16
7119 7230 5.758784 TGCAATGACAAGAAATGCAAATTCA 59.241 32.000 15.48 2.19 43.39 2.57
7120 7231 6.230849 TGCAATGACAAGAAATGCAAATTC 57.769 33.333 7.36 7.36 43.39 2.17
7172 7287 2.642139 ATGCCGAAATTGCAGACAAG 57.358 45.000 0.00 0.00 42.92 3.16
7188 7303 1.065126 ACCCCTGCTTCAGACTAATGC 60.065 52.381 0.00 0.00 32.44 3.56
7191 7306 3.876309 AAAACCCCTGCTTCAGACTAA 57.124 42.857 0.00 0.00 32.44 2.24
7288 7404 2.202544 CGTGAGAGCTCCGCAGAC 60.203 66.667 10.93 0.00 0.00 3.51
7305 7421 2.428544 TAGCTCCTCTCTCTGTCACC 57.571 55.000 0.00 0.00 0.00 4.02
7451 7567 5.581085 AGAACTATTCTAACAACACGATGCC 59.419 40.000 0.00 0.00 38.49 4.40
7580 7700 6.151817 GGCTCCAAACATAAATCTCAGAAGTT 59.848 38.462 0.00 0.00 0.00 2.66
7585 7705 5.188434 TGAGGCTCCAAACATAAATCTCAG 58.812 41.667 12.86 0.00 0.00 3.35
7589 7709 4.036144 GCTCTGAGGCTCCAAACATAAATC 59.964 45.833 12.86 0.00 0.00 2.17
7594 7714 0.990374 AGCTCTGAGGCTCCAAACAT 59.010 50.000 12.86 0.00 38.24 2.71
7631 7751 9.059260 AGATAACCGCGGTAAAAATATACAAAT 57.941 29.630 34.44 13.23 0.00 2.32
7666 7789 1.922570 CCCGAATGTACTTCCTCACG 58.077 55.000 0.00 0.00 0.00 4.35
7698 7822 9.929180 ATAAAACTTTTTCTAGCCAATTTCTCC 57.071 29.630 0.00 0.00 0.00 3.71
7750 7876 7.129457 AGTAGCACCTCATTCATATTTCTCA 57.871 36.000 0.00 0.00 0.00 3.27
7788 7914 6.706295 AGGTTTTGTCCACAAATCAAGAAAA 58.294 32.000 5.72 0.00 44.30 2.29
7798 7933 5.321102 ACAGCATATAGGTTTTGTCCACAA 58.679 37.500 0.00 0.00 0.00 3.33
7807 7942 9.125026 CCAGAAAATTAGACAGCATATAGGTTT 57.875 33.333 0.00 0.00 0.00 3.27
7810 7945 7.453393 TCCCAGAAAATTAGACAGCATATAGG 58.547 38.462 0.00 0.00 0.00 2.57
7813 7948 6.904626 ACTCCCAGAAAATTAGACAGCATAT 58.095 36.000 0.00 0.00 0.00 1.78
7854 7989 5.989777 CGTGCTACTAAAATATGGTTAGGCT 59.010 40.000 9.93 0.00 33.62 4.58
7856 7991 6.202188 CACCGTGCTACTAAAATATGGTTAGG 59.798 42.308 9.93 0.00 33.62 2.69
7881 8016 0.318762 CTGCGCCCTCCTTAGATACC 59.681 60.000 4.18 0.00 0.00 2.73
7885 8020 2.683572 TGCTGCGCCCTCCTTAGA 60.684 61.111 4.18 0.00 0.00 2.10
7890 8025 1.674322 TTTTAGTGCTGCGCCCTCC 60.674 57.895 9.97 0.00 0.00 4.30
7895 8030 1.439679 AGGTAGTTTTAGTGCTGCGC 58.560 50.000 4.76 4.76 0.00 6.09
7898 8033 5.617751 GCACATCAAGGTAGTTTTAGTGCTG 60.618 44.000 0.00 0.00 44.49 4.41
7906 11877 1.165270 GGCGCACATCAAGGTAGTTT 58.835 50.000 10.83 0.00 0.00 2.66
7909 11880 2.173669 CCGGCGCACATCAAGGTAG 61.174 63.158 10.83 0.00 0.00 3.18
7910 11881 2.125310 CCGGCGCACATCAAGGTA 60.125 61.111 10.83 0.00 0.00 3.08
7911 11882 3.545124 TTCCGGCGCACATCAAGGT 62.545 57.895 10.83 0.00 0.00 3.50
7912 11883 2.745884 TTCCGGCGCACATCAAGG 60.746 61.111 10.83 0.14 0.00 3.61
7914 11885 0.886938 TTTCTTCCGGCGCACATCAA 60.887 50.000 10.83 0.00 0.00 2.57
7916 11887 0.454452 GTTTTCTTCCGGCGCACATC 60.454 55.000 10.83 0.00 0.00 3.06
7917 11888 1.579429 GTTTTCTTCCGGCGCACAT 59.421 52.632 10.83 0.00 0.00 3.21
7918 11889 2.548295 GGTTTTCTTCCGGCGCACA 61.548 57.895 10.83 0.00 0.00 4.57
7919 11890 2.254350 GGTTTTCTTCCGGCGCAC 59.746 61.111 10.83 0.00 0.00 5.34
7920 11891 2.969300 AAGGGTTTTCTTCCGGCGCA 62.969 55.000 10.83 0.00 0.00 6.09
7921 11892 2.265904 AAGGGTTTTCTTCCGGCGC 61.266 57.895 0.00 0.00 0.00 6.53
7922 11893 1.579429 CAAGGGTTTTCTTCCGGCG 59.421 57.895 0.00 0.00 0.00 6.46
7923 11894 1.179174 AGCAAGGGTTTTCTTCCGGC 61.179 55.000 0.00 0.00 0.00 6.13
7924 11895 2.194201 TAGCAAGGGTTTTCTTCCGG 57.806 50.000 0.00 0.00 0.00 5.14
7925 11896 4.577834 TTTTAGCAAGGGTTTTCTTCCG 57.422 40.909 0.00 0.00 0.00 4.30
7944 11927 7.718753 TGTTTCATGTATTCTTGGGCAATTTTT 59.281 29.630 0.00 0.00 0.00 1.94
7945 11928 7.222872 TGTTTCATGTATTCTTGGGCAATTTT 58.777 30.769 0.00 0.00 0.00 1.82
7946 11929 6.767456 TGTTTCATGTATTCTTGGGCAATTT 58.233 32.000 0.00 0.00 0.00 1.82
7949 11932 5.999205 ATGTTTCATGTATTCTTGGGCAA 57.001 34.783 0.00 0.00 0.00 4.52
7951 11934 8.629158 TGTTATATGTTTCATGTATTCTTGGGC 58.371 33.333 0.00 0.00 0.00 5.36
7963 11946 8.404765 TGATTCGCAACATGTTATATGTTTCAT 58.595 29.630 11.53 0.00 39.94 2.57
7972 12015 8.243426 ACTTGTAAATGATTCGCAACATGTTAT 58.757 29.630 11.53 0.43 0.00 1.89
7975 12018 6.012658 ACTTGTAAATGATTCGCAACATGT 57.987 33.333 0.00 0.00 0.00 3.21
8043 12090 6.978659 CACCTCGTTTCAGCTACTATTAATCA 59.021 38.462 0.00 0.00 0.00 2.57
8044 12091 6.421202 CCACCTCGTTTCAGCTACTATTAATC 59.579 42.308 0.00 0.00 0.00 1.75
8046 12093 5.657474 CCACCTCGTTTCAGCTACTATTAA 58.343 41.667 0.00 0.00 0.00 1.40
8050 12097 1.203994 GCCACCTCGTTTCAGCTACTA 59.796 52.381 0.00 0.00 0.00 1.82
8051 12098 0.037232 GCCACCTCGTTTCAGCTACT 60.037 55.000 0.00 0.00 0.00 2.57
8052 12099 0.320421 TGCCACCTCGTTTCAGCTAC 60.320 55.000 0.00 0.00 0.00 3.58
8053 12100 0.320421 GTGCCACCTCGTTTCAGCTA 60.320 55.000 0.00 0.00 0.00 3.32
8076 12123 2.171079 TAGCCGTAACAGCGCATGC 61.171 57.895 11.47 7.91 43.24 4.06
8084 12131 2.496070 AGCTTGATCTGTAGCCGTAACA 59.504 45.455 10.20 0.00 38.14 2.41
8104 12151 2.440409 ACACCTTATCCTGCTTGCAAG 58.560 47.619 22.44 22.44 0.00 4.01
8123 12170 7.980099 CGTATAAACTAGGGGGATGATTCATAC 59.020 40.741 0.00 0.00 0.00 2.39
8126 12173 5.842328 ACGTATAAACTAGGGGGATGATTCA 59.158 40.000 0.00 0.00 0.00 2.57
8153 12200 0.109412 GCGCGTACAGACAAGGTAGT 60.109 55.000 8.43 0.00 0.00 2.73
8154 12201 1.132199 CGCGCGTACAGACAAGGTAG 61.132 60.000 24.19 0.00 0.00 3.18
8164 12211 3.185365 CATGCTTCCGCGCGTACA 61.185 61.111 29.95 20.19 39.65 2.90
8179 12226 3.310774 CGATTCAGTCCTTTCGAATGCAT 59.689 43.478 0.00 0.00 36.50 3.96
8293 12340 3.508840 GGCCAACATTCCTCGGCG 61.509 66.667 0.00 0.00 45.85 6.46
8317 12364 2.413437 CTAGGCAGACAGGATCGCGG 62.413 65.000 6.13 0.00 0.00 6.46
8320 12367 1.112315 AGGCTAGGCAGACAGGATCG 61.112 60.000 19.70 0.00 28.86 3.69
8358 12405 4.547367 ATAGGCGTTGGCGGGCTC 62.547 66.667 2.38 0.00 41.05 4.70
8359 12406 4.856801 CATAGGCGTTGGCGGGCT 62.857 66.667 2.38 4.64 43.38 5.19
8362 12409 4.856801 AGGCATAGGCGTTGGCGG 62.857 66.667 9.83 0.00 43.84 6.13
8363 12410 2.824041 AAGGCATAGGCGTTGGCG 60.824 61.111 6.50 0.00 45.61 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.