Multiple sequence alignment - TraesCS7A01G190100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G190100 chr7A 100.000 3359 0 0 1 3359 147921065 147917707 0.000000e+00 6204.0
1 TraesCS7A01G190100 chr7A 95.082 61 3 0 543 603 90363064 90363124 2.760000e-16 97.1
2 TraesCS7A01G190100 chr2A 95.575 2576 74 11 600 3164 461392277 461394823 0.000000e+00 4089.0
3 TraesCS7A01G190100 chr2A 91.504 2719 158 30 603 3303 769227586 769230249 0.000000e+00 3674.0
4 TraesCS7A01G190100 chr2A 90.976 2715 173 35 604 3303 115129965 115132622 0.000000e+00 3591.0
5 TraesCS7A01G190100 chr1A 95.157 2581 77 17 604 3164 302911829 302914381 0.000000e+00 4030.0
6 TraesCS7A01G190100 chr1A 93.548 62 4 0 543 604 271624630 271624569 3.570000e-15 93.5
7 TraesCS7A01G190100 chr1A 93.548 62 4 0 543 604 546016971 546017032 3.570000e-15 93.5
8 TraesCS7A01G190100 chr1A 93.548 62 4 0 543 604 585862198 585862137 3.570000e-15 93.5
9 TraesCS7A01G190100 chr1A 93.443 61 4 0 543 603 271624433 271624493 1.280000e-14 91.6
10 TraesCS7A01G190100 chr3A 94.825 2570 96 20 604 3164 37632900 37635441 0.000000e+00 3975.0
11 TraesCS7A01G190100 chr3A 94.316 2586 75 16 602 3164 27908722 27906186 0.000000e+00 3895.0
12 TraesCS7A01G190100 chr3A 92.685 1326 56 16 607 1929 547977186 547975899 0.000000e+00 1873.0
13 TraesCS7A01G190100 chr3A 95.082 61 3 0 543 603 421815272 421815212 2.760000e-16 97.1
14 TraesCS7A01G190100 chr3A 95.000 60 3 0 545 604 63845186 63845245 9.920000e-16 95.3
15 TraesCS7A01G190100 chr3A 93.548 62 4 0 543 604 350220156 350220095 3.570000e-15 93.5
16 TraesCS7A01G190100 chr4A 93.465 2693 116 24 600 3259 521945173 521947838 0.000000e+00 3943.0
17 TraesCS7A01G190100 chr4A 93.651 63 4 0 542 604 311489832 311489770 9.920000e-16 95.3
18 TraesCS7A01G190100 chr5A 91.504 2719 164 35 600 3303 650150475 650153141 0.000000e+00 3679.0
19 TraesCS7A01G190100 chr5A 94.032 620 28 2 2649 3259 647553084 647553703 0.000000e+00 931.0
20 TraesCS7A01G190100 chr5A 93.548 62 4 0 543 604 37637355 37637294 3.570000e-15 93.5
21 TraesCS7A01G190100 chr6A 91.293 2722 164 33 600 3303 162654335 162657001 0.000000e+00 3646.0
22 TraesCS7A01G190100 chr6A 95.807 2027 57 16 602 2615 428285583 428287594 0.000000e+00 3247.0
23 TraesCS7A01G190100 chr6A 96.436 1824 55 3 1348 3164 608061677 608063497 0.000000e+00 3000.0
24 TraesCS7A01G190100 chr6A 92.308 65 5 0 540 604 608056690 608056754 3.570000e-15 93.5
25 TraesCS7A01G190100 chr6A 91.935 62 5 0 543 604 117126538 117126477 1.660000e-13 87.9
26 TraesCS7A01G190100 chr6A 90.769 65 6 0 540 604 551533781 551533845 1.660000e-13 87.9
27 TraesCS7A01G190100 chr6A 91.935 62 5 0 543 604 591128001 591127940 1.660000e-13 87.9
28 TraesCS7A01G190100 chr6A 91.935 62 5 0 543 604 591158943 591158882 1.660000e-13 87.9
29 TraesCS7A01G190100 chr4B 90.889 2700 171 37 604 3262 657805506 657802841 0.000000e+00 3554.0
30 TraesCS7A01G190100 chr3D 91.040 2578 156 43 604 3164 523400411 523402930 0.000000e+00 3411.0
31 TraesCS7A01G190100 chr3D 93.220 59 4 0 546 604 428262601 428262543 1.660000e-13 87.9
32 TraesCS7A01G190100 chr7B 82.599 2655 321 94 604 3164 488250208 488247601 0.000000e+00 2213.0
33 TraesCS7A01G190100 chr7B 85.922 206 25 2 342 543 109036350 109036145 2.030000e-52 217.0
34 TraesCS7A01G190100 chr5B 92.069 1576 78 19 1747 3292 69032176 69033734 0.000000e+00 2174.0
35 TraesCS7A01G190100 chr5B 87.216 970 90 24 604 1558 24144650 24143700 0.000000e+00 1074.0
36 TraesCS7A01G190100 chr5B 86.454 1004 95 24 604 1590 69031151 69032130 0.000000e+00 1062.0
37 TraesCS7A01G190100 chr5B 88.710 62 7 0 543 604 337192978 337193039 3.590000e-10 76.8
38 TraesCS7A01G190100 chr1B 85.741 1073 94 32 604 1664 668657476 668658501 0.000000e+00 1079.0
39 TraesCS7A01G190100 chr1B 93.269 104 6 1 3169 3272 460161660 460161558 5.800000e-33 152.0
40 TraesCS7A01G190100 chr1B 90.476 63 6 0 542 604 423193012 423192950 2.150000e-12 84.2
41 TraesCS7A01G190100 chr3B 86.439 966 83 28 603 1552 470855786 470856719 0.000000e+00 1014.0
42 TraesCS7A01G190100 chr2B 81.818 759 102 26 607 1344 108162335 108161592 3.710000e-169 604.0
43 TraesCS7A01G190100 chr7D 96.957 230 7 0 314 543 146624882 146624653 1.460000e-103 387.0
44 TraesCS7A01G190100 chr7D 94.675 169 7 2 101 267 146625404 146625236 9.240000e-66 261.0
45 TraesCS7A01G190100 chr6B 93.651 63 4 0 542 604 402580110 402580048 9.920000e-16 95.3
46 TraesCS7A01G190100 chr1D 91.379 58 5 0 547 604 96930244 96930301 2.780000e-11 80.5
47 TraesCS7A01G190100 chr1D 94.231 52 3 0 553 604 379420847 379420796 2.780000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G190100 chr7A 147917707 147921065 3358 True 6204 6204 100.0000 1 3359 1 chr7A.!!$R1 3358
1 TraesCS7A01G190100 chr2A 461392277 461394823 2546 False 4089 4089 95.5750 600 3164 1 chr2A.!!$F2 2564
2 TraesCS7A01G190100 chr2A 769227586 769230249 2663 False 3674 3674 91.5040 603 3303 1 chr2A.!!$F3 2700
3 TraesCS7A01G190100 chr2A 115129965 115132622 2657 False 3591 3591 90.9760 604 3303 1 chr2A.!!$F1 2699
4 TraesCS7A01G190100 chr1A 302911829 302914381 2552 False 4030 4030 95.1570 604 3164 1 chr1A.!!$F2 2560
5 TraesCS7A01G190100 chr3A 37632900 37635441 2541 False 3975 3975 94.8250 604 3164 1 chr3A.!!$F1 2560
6 TraesCS7A01G190100 chr3A 27906186 27908722 2536 True 3895 3895 94.3160 602 3164 1 chr3A.!!$R1 2562
7 TraesCS7A01G190100 chr3A 547975899 547977186 1287 True 1873 1873 92.6850 607 1929 1 chr3A.!!$R4 1322
8 TraesCS7A01G190100 chr4A 521945173 521947838 2665 False 3943 3943 93.4650 600 3259 1 chr4A.!!$F1 2659
9 TraesCS7A01G190100 chr5A 650150475 650153141 2666 False 3679 3679 91.5040 600 3303 1 chr5A.!!$F2 2703
10 TraesCS7A01G190100 chr5A 647553084 647553703 619 False 931 931 94.0320 2649 3259 1 chr5A.!!$F1 610
11 TraesCS7A01G190100 chr6A 162654335 162657001 2666 False 3646 3646 91.2930 600 3303 1 chr6A.!!$F1 2703
12 TraesCS7A01G190100 chr6A 428285583 428287594 2011 False 3247 3247 95.8070 602 2615 1 chr6A.!!$F2 2013
13 TraesCS7A01G190100 chr6A 608061677 608063497 1820 False 3000 3000 96.4360 1348 3164 1 chr6A.!!$F5 1816
14 TraesCS7A01G190100 chr4B 657802841 657805506 2665 True 3554 3554 90.8890 604 3262 1 chr4B.!!$R1 2658
15 TraesCS7A01G190100 chr3D 523400411 523402930 2519 False 3411 3411 91.0400 604 3164 1 chr3D.!!$F1 2560
16 TraesCS7A01G190100 chr7B 488247601 488250208 2607 True 2213 2213 82.5990 604 3164 1 chr7B.!!$R2 2560
17 TraesCS7A01G190100 chr5B 69031151 69033734 2583 False 1618 2174 89.2615 604 3292 2 chr5B.!!$F2 2688
18 TraesCS7A01G190100 chr5B 24143700 24144650 950 True 1074 1074 87.2160 604 1558 1 chr5B.!!$R1 954
19 TraesCS7A01G190100 chr1B 668657476 668658501 1025 False 1079 1079 85.7410 604 1664 1 chr1B.!!$F1 1060
20 TraesCS7A01G190100 chr3B 470855786 470856719 933 False 1014 1014 86.4390 603 1552 1 chr3B.!!$F1 949
21 TraesCS7A01G190100 chr2B 108161592 108162335 743 True 604 604 81.8180 607 1344 1 chr2B.!!$R1 737
22 TraesCS7A01G190100 chr7D 146624653 146625404 751 True 324 387 95.8160 101 543 2 chr7D.!!$R1 442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.034337 TGTTAGCACGGAACACTCCC 59.966 55.0 0.0 0.0 38.71 4.30 F
47 48 0.251653 TAGCACGGAACACTCCCTCT 60.252 55.0 0.0 0.0 38.71 3.69 F
481 791 0.321564 CGGATCAGCCACACAGGAAA 60.322 55.0 0.0 0.0 41.22 3.13 F
1120 1510 0.388294 GGTTAGGTGCTAGTAGGCCG 59.612 60.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1914 0.464554 GCCATCTAACCTGGACTGGC 60.465 60.000 0.0 7.3 42.0 4.85 R
1969 2410 3.125316 TGCAAAGCTTGTCATTTTCAGC 58.875 40.909 0.0 0.0 0.0 4.26 R
2062 2503 2.233271 CTCCACTTGTTTCTGGTGCAT 58.767 47.619 0.0 0.0 0.0 3.96 R
2689 3193 1.203112 TGAGCCACCAAGCCCAATTAA 60.203 47.619 0.0 0.0 0.0 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.664188 GTTGAAAACTTTGTTAGCACGGA 58.336 39.130 0.00 0.00 45.32 4.69
37 38 4.966965 TGAAAACTTTGTTAGCACGGAA 57.033 36.364 0.00 0.00 0.00 4.30
38 39 4.664188 TGAAAACTTTGTTAGCACGGAAC 58.336 39.130 0.00 0.00 0.00 3.62
39 40 4.156190 TGAAAACTTTGTTAGCACGGAACA 59.844 37.500 0.00 0.00 35.03 3.18
40 41 3.685836 AACTTTGTTAGCACGGAACAC 57.314 42.857 0.00 0.00 36.55 3.32
41 42 2.914059 ACTTTGTTAGCACGGAACACT 58.086 42.857 0.00 0.00 36.55 3.55
42 43 2.870411 ACTTTGTTAGCACGGAACACTC 59.130 45.455 0.00 0.00 36.55 3.51
43 44 1.873698 TTGTTAGCACGGAACACTCC 58.126 50.000 0.00 0.00 36.55 3.85
44 45 0.034337 TGTTAGCACGGAACACTCCC 59.966 55.000 0.00 0.00 38.71 4.30
45 46 0.320697 GTTAGCACGGAACACTCCCT 59.679 55.000 0.00 0.00 38.71 4.20
46 47 0.606604 TTAGCACGGAACACTCCCTC 59.393 55.000 0.00 0.00 38.71 4.30
47 48 0.251653 TAGCACGGAACACTCCCTCT 60.252 55.000 0.00 0.00 38.71 3.69
48 49 1.374758 GCACGGAACACTCCCTCTG 60.375 63.158 0.00 0.00 38.71 3.35
49 50 2.050269 CACGGAACACTCCCTCTGT 58.950 57.895 0.00 0.00 38.71 3.41
50 51 1.254026 CACGGAACACTCCCTCTGTA 58.746 55.000 0.00 0.00 38.71 2.74
51 52 1.616865 CACGGAACACTCCCTCTGTAA 59.383 52.381 0.00 0.00 38.71 2.41
52 53 2.036733 CACGGAACACTCCCTCTGTAAA 59.963 50.000 0.00 0.00 38.71 2.01
53 54 2.036862 ACGGAACACTCCCTCTGTAAAC 59.963 50.000 0.00 0.00 38.71 2.01
54 55 2.299297 CGGAACACTCCCTCTGTAAACT 59.701 50.000 0.00 0.00 38.71 2.66
55 56 3.508793 CGGAACACTCCCTCTGTAAACTA 59.491 47.826 0.00 0.00 38.71 2.24
56 57 4.617762 CGGAACACTCCCTCTGTAAACTAC 60.618 50.000 0.00 0.00 38.71 2.73
57 58 4.527427 GGAACACTCCCTCTGTAAACTACT 59.473 45.833 0.00 0.00 35.42 2.57
58 59 5.470047 AACACTCCCTCTGTAAACTACTG 57.530 43.478 0.00 0.00 0.00 2.74
59 60 4.481072 ACACTCCCTCTGTAAACTACTGT 58.519 43.478 0.00 0.00 0.00 3.55
60 61 5.638133 ACACTCCCTCTGTAAACTACTGTA 58.362 41.667 0.00 0.00 0.00 2.74
61 62 6.073314 ACACTCCCTCTGTAAACTACTGTAA 58.927 40.000 0.00 0.00 0.00 2.41
62 63 6.208994 ACACTCCCTCTGTAAACTACTGTAAG 59.791 42.308 0.00 0.00 42.29 2.34
63 64 6.433404 CACTCCCTCTGTAAACTACTGTAAGA 59.567 42.308 0.00 0.00 37.43 2.10
64 65 7.122948 CACTCCCTCTGTAAACTACTGTAAGAT 59.877 40.741 0.00 0.00 37.43 2.40
65 66 7.339976 ACTCCCTCTGTAAACTACTGTAAGATC 59.660 40.741 0.00 0.00 37.43 2.75
66 67 6.318144 TCCCTCTGTAAACTACTGTAAGATCG 59.682 42.308 0.00 0.00 37.43 3.69
67 68 6.095160 CCCTCTGTAAACTACTGTAAGATCGT 59.905 42.308 0.00 0.00 37.43 3.73
68 69 7.362747 CCCTCTGTAAACTACTGTAAGATCGTT 60.363 40.741 0.00 0.00 37.43 3.85
69 70 8.027771 CCTCTGTAAACTACTGTAAGATCGTTT 58.972 37.037 7.14 7.14 37.43 3.60
130 131 3.422417 TCTAAGCACGAGCACTGATAC 57.578 47.619 7.77 0.00 45.49 2.24
236 237 1.026182 TGAGCCATCGTGCAATGGTC 61.026 55.000 16.91 13.33 46.69 4.02
246 247 1.358402 GCAATGGTCGTGTGCACAA 59.642 52.632 23.59 5.74 38.19 3.33
254 255 1.092921 TCGTGTGCACAACAGTTCCC 61.093 55.000 23.59 5.36 40.26 3.97
255 256 1.355210 GTGTGCACAACAGTTCCCG 59.645 57.895 23.59 0.00 40.26 5.14
267 270 2.028930 ACAGTTCCCGTAAGCTCTCTTG 60.029 50.000 0.00 0.00 33.85 3.02
268 271 2.028930 CAGTTCCCGTAAGCTCTCTTGT 60.029 50.000 0.00 0.00 33.85 3.16
269 272 3.192844 CAGTTCCCGTAAGCTCTCTTGTA 59.807 47.826 0.00 0.00 33.85 2.41
270 273 3.830755 AGTTCCCGTAAGCTCTCTTGTAA 59.169 43.478 0.00 0.00 33.85 2.41
271 274 4.282703 AGTTCCCGTAAGCTCTCTTGTAAA 59.717 41.667 0.00 0.00 33.85 2.01
272 275 4.184079 TCCCGTAAGCTCTCTTGTAAAC 57.816 45.455 0.00 0.00 33.85 2.01
273 276 3.575256 TCCCGTAAGCTCTCTTGTAAACA 59.425 43.478 0.00 0.00 33.85 2.83
274 277 3.927142 CCCGTAAGCTCTCTTGTAAACAG 59.073 47.826 0.00 0.00 33.85 3.16
275 278 4.557205 CCGTAAGCTCTCTTGTAAACAGT 58.443 43.478 0.00 0.00 33.85 3.55
276 279 4.621886 CCGTAAGCTCTCTTGTAAACAGTC 59.378 45.833 0.00 0.00 33.85 3.51
277 280 4.321217 CGTAAGCTCTCTTGTAAACAGTCG 59.679 45.833 0.00 0.00 33.85 4.18
278 281 2.678324 AGCTCTCTTGTAAACAGTCGC 58.322 47.619 0.00 0.00 0.00 5.19
279 282 1.387084 GCTCTCTTGTAAACAGTCGCG 59.613 52.381 0.00 0.00 0.00 5.87
280 283 2.662700 CTCTCTTGTAAACAGTCGCGT 58.337 47.619 5.77 0.00 0.00 6.01
281 284 3.050619 CTCTCTTGTAAACAGTCGCGTT 58.949 45.455 5.77 0.00 0.00 4.84
282 285 3.047796 TCTCTTGTAAACAGTCGCGTTC 58.952 45.455 5.77 0.31 0.00 3.95
283 286 2.792674 CTCTTGTAAACAGTCGCGTTCA 59.207 45.455 5.77 0.00 0.00 3.18
284 287 2.536803 TCTTGTAAACAGTCGCGTTCAC 59.463 45.455 5.77 0.00 0.00 3.18
285 288 1.923899 TGTAAACAGTCGCGTTCACA 58.076 45.000 5.77 0.00 0.00 3.58
286 289 2.269172 TGTAAACAGTCGCGTTCACAA 58.731 42.857 5.77 0.00 0.00 3.33
287 290 2.867368 TGTAAACAGTCGCGTTCACAAT 59.133 40.909 5.77 0.00 0.00 2.71
288 291 2.663279 AAACAGTCGCGTTCACAATC 57.337 45.000 5.77 0.00 0.00 2.67
289 292 0.506932 AACAGTCGCGTTCACAATCG 59.493 50.000 5.77 0.00 0.00 3.34
295 298 2.867472 CGTTCACAATCGCACCCC 59.133 61.111 0.00 0.00 0.00 4.95
296 299 2.686816 CGTTCACAATCGCACCCCC 61.687 63.158 0.00 0.00 0.00 5.40
297 300 1.303317 GTTCACAATCGCACCCCCT 60.303 57.895 0.00 0.00 0.00 4.79
298 301 1.002624 TTCACAATCGCACCCCCTC 60.003 57.895 0.00 0.00 0.00 4.30
299 302 1.488705 TTCACAATCGCACCCCCTCT 61.489 55.000 0.00 0.00 0.00 3.69
300 303 1.450312 CACAATCGCACCCCCTCTC 60.450 63.158 0.00 0.00 0.00 3.20
301 304 1.613630 ACAATCGCACCCCCTCTCT 60.614 57.895 0.00 0.00 0.00 3.10
302 305 1.201429 ACAATCGCACCCCCTCTCTT 61.201 55.000 0.00 0.00 0.00 2.85
303 306 0.745845 CAATCGCACCCCCTCTCTTG 60.746 60.000 0.00 0.00 0.00 3.02
304 307 1.201429 AATCGCACCCCCTCTCTTGT 61.201 55.000 0.00 0.00 0.00 3.16
305 308 0.325296 ATCGCACCCCCTCTCTTGTA 60.325 55.000 0.00 0.00 0.00 2.41
306 309 0.543410 TCGCACCCCCTCTCTTGTAA 60.543 55.000 0.00 0.00 0.00 2.41
307 310 0.391263 CGCACCCCCTCTCTTGTAAC 60.391 60.000 0.00 0.00 0.00 2.50
308 311 0.984995 GCACCCCCTCTCTTGTAACT 59.015 55.000 0.00 0.00 0.00 2.24
309 312 1.339151 GCACCCCCTCTCTTGTAACTG 60.339 57.143 0.00 0.00 0.00 3.16
310 313 1.978580 CACCCCCTCTCTTGTAACTGT 59.021 52.381 0.00 0.00 0.00 3.55
311 314 2.028020 CACCCCCTCTCTTGTAACTGTC 60.028 54.545 0.00 0.00 0.00 3.51
312 315 1.204941 CCCCCTCTCTTGTAACTGTCG 59.795 57.143 0.00 0.00 0.00 4.35
341 651 9.520515 CCTTCAGGGCATATTAAATATGTAACT 57.479 33.333 0.00 0.00 43.52 2.24
343 653 9.860650 TTCAGGGCATATTAAATATGTAACTGT 57.139 29.630 5.93 0.00 43.52 3.55
360 670 8.257830 TGTAACTGTAATCAACGAATAATGCA 57.742 30.769 0.00 0.00 0.00 3.96
361 671 8.172484 TGTAACTGTAATCAACGAATAATGCAC 58.828 33.333 0.00 0.00 0.00 4.57
362 672 6.735678 ACTGTAATCAACGAATAATGCACA 57.264 33.333 0.00 0.00 0.00 4.57
363 673 6.542852 ACTGTAATCAACGAATAATGCACAC 58.457 36.000 0.00 0.00 0.00 3.82
364 674 6.148645 ACTGTAATCAACGAATAATGCACACA 59.851 34.615 0.00 0.00 0.00 3.72
365 675 6.903419 TGTAATCAACGAATAATGCACACAA 58.097 32.000 0.00 0.00 0.00 3.33
366 676 7.534282 TGTAATCAACGAATAATGCACACAAT 58.466 30.769 0.00 0.00 0.00 2.71
367 677 7.696035 TGTAATCAACGAATAATGCACACAATC 59.304 33.333 0.00 0.00 0.00 2.67
368 678 5.878332 TCAACGAATAATGCACACAATCT 57.122 34.783 0.00 0.00 0.00 2.40
369 679 6.252967 TCAACGAATAATGCACACAATCTT 57.747 33.333 0.00 0.00 0.00 2.40
370 680 7.371126 TCAACGAATAATGCACACAATCTTA 57.629 32.000 0.00 0.00 0.00 2.10
371 681 7.240674 TCAACGAATAATGCACACAATCTTAC 58.759 34.615 0.00 0.00 0.00 2.34
372 682 6.985188 ACGAATAATGCACACAATCTTACT 57.015 33.333 0.00 0.00 0.00 2.24
373 683 6.775088 ACGAATAATGCACACAATCTTACTG 58.225 36.000 0.00 0.00 0.00 2.74
374 684 5.678483 CGAATAATGCACACAATCTTACTGC 59.322 40.000 0.00 0.00 0.00 4.40
375 685 6.457392 CGAATAATGCACACAATCTTACTGCT 60.457 38.462 0.00 0.00 0.00 4.24
376 686 4.691860 AATGCACACAATCTTACTGCTC 57.308 40.909 0.00 0.00 0.00 4.26
377 687 3.124578 TGCACACAATCTTACTGCTCA 57.875 42.857 0.00 0.00 0.00 4.26
378 688 3.678289 TGCACACAATCTTACTGCTCAT 58.322 40.909 0.00 0.00 0.00 2.90
379 689 3.686241 TGCACACAATCTTACTGCTCATC 59.314 43.478 0.00 0.00 0.00 2.92
380 690 3.242220 GCACACAATCTTACTGCTCATCG 60.242 47.826 0.00 0.00 0.00 3.84
381 691 3.928992 CACACAATCTTACTGCTCATCGT 59.071 43.478 0.00 0.00 0.00 3.73
382 692 4.032217 CACACAATCTTACTGCTCATCGTC 59.968 45.833 0.00 0.00 0.00 4.20
383 693 4.081972 ACACAATCTTACTGCTCATCGTCT 60.082 41.667 0.00 0.00 0.00 4.18
384 694 4.502282 CACAATCTTACTGCTCATCGTCTC 59.498 45.833 0.00 0.00 0.00 3.36
385 695 4.400884 ACAATCTTACTGCTCATCGTCTCT 59.599 41.667 0.00 0.00 0.00 3.10
386 696 5.105554 ACAATCTTACTGCTCATCGTCTCTT 60.106 40.000 0.00 0.00 0.00 2.85
387 697 4.624336 TCTTACTGCTCATCGTCTCTTC 57.376 45.455 0.00 0.00 0.00 2.87
388 698 4.010349 TCTTACTGCTCATCGTCTCTTCA 58.990 43.478 0.00 0.00 0.00 3.02
389 699 4.642437 TCTTACTGCTCATCGTCTCTTCAT 59.358 41.667 0.00 0.00 0.00 2.57
390 700 3.883830 ACTGCTCATCGTCTCTTCATT 57.116 42.857 0.00 0.00 0.00 2.57
391 701 4.199432 ACTGCTCATCGTCTCTTCATTT 57.801 40.909 0.00 0.00 0.00 2.32
392 702 4.573900 ACTGCTCATCGTCTCTTCATTTT 58.426 39.130 0.00 0.00 0.00 1.82
393 703 4.999950 ACTGCTCATCGTCTCTTCATTTTT 59.000 37.500 0.00 0.00 0.00 1.94
394 704 6.166279 ACTGCTCATCGTCTCTTCATTTTTA 58.834 36.000 0.00 0.00 0.00 1.52
395 705 6.091441 ACTGCTCATCGTCTCTTCATTTTTAC 59.909 38.462 0.00 0.00 0.00 2.01
396 706 5.931724 TGCTCATCGTCTCTTCATTTTTACA 59.068 36.000 0.00 0.00 0.00 2.41
397 707 6.091305 TGCTCATCGTCTCTTCATTTTTACAG 59.909 38.462 0.00 0.00 0.00 2.74
398 708 6.408858 TCATCGTCTCTTCATTTTTACAGC 57.591 37.500 0.00 0.00 0.00 4.40
399 709 5.931724 TCATCGTCTCTTCATTTTTACAGCA 59.068 36.000 0.00 0.00 0.00 4.41
400 710 6.426633 TCATCGTCTCTTCATTTTTACAGCAA 59.573 34.615 0.00 0.00 0.00 3.91
401 711 5.985781 TCGTCTCTTCATTTTTACAGCAAC 58.014 37.500 0.00 0.00 0.00 4.17
402 712 5.049680 TCGTCTCTTCATTTTTACAGCAACC 60.050 40.000 0.00 0.00 0.00 3.77
403 713 5.049405 CGTCTCTTCATTTTTACAGCAACCT 60.049 40.000 0.00 0.00 0.00 3.50
404 714 6.513393 CGTCTCTTCATTTTTACAGCAACCTT 60.513 38.462 0.00 0.00 0.00 3.50
405 715 6.638468 GTCTCTTCATTTTTACAGCAACCTTG 59.362 38.462 0.00 0.00 0.00 3.61
406 716 6.545666 TCTCTTCATTTTTACAGCAACCTTGA 59.454 34.615 0.00 0.00 0.00 3.02
407 717 6.503524 TCTTCATTTTTACAGCAACCTTGAC 58.496 36.000 0.00 0.00 0.00 3.18
408 718 5.843673 TCATTTTTACAGCAACCTTGACA 57.156 34.783 0.00 0.00 0.00 3.58
409 719 6.214191 TCATTTTTACAGCAACCTTGACAA 57.786 33.333 0.00 0.00 0.00 3.18
410 720 6.815089 TCATTTTTACAGCAACCTTGACAAT 58.185 32.000 0.00 0.00 0.00 2.71
411 721 6.700960 TCATTTTTACAGCAACCTTGACAATG 59.299 34.615 0.00 0.00 0.00 2.82
412 722 4.582701 TTTACAGCAACCTTGACAATGG 57.417 40.909 0.00 0.00 0.00 3.16
413 723 2.363306 ACAGCAACCTTGACAATGGA 57.637 45.000 9.74 0.00 0.00 3.41
414 724 1.956477 ACAGCAACCTTGACAATGGAC 59.044 47.619 9.74 1.56 0.00 4.02
415 725 1.270550 CAGCAACCTTGACAATGGACC 59.729 52.381 9.74 0.00 0.00 4.46
416 726 1.133513 AGCAACCTTGACAATGGACCA 60.134 47.619 0.00 0.00 0.00 4.02
417 727 1.000274 GCAACCTTGACAATGGACCAC 60.000 52.381 0.00 0.00 0.00 4.16
418 728 2.586425 CAACCTTGACAATGGACCACT 58.414 47.619 0.00 0.00 0.00 4.00
419 729 2.958355 CAACCTTGACAATGGACCACTT 59.042 45.455 0.00 0.00 0.00 3.16
420 730 2.586425 ACCTTGACAATGGACCACTTG 58.414 47.619 0.00 5.75 0.00 3.16
421 731 2.174639 ACCTTGACAATGGACCACTTGA 59.825 45.455 18.03 0.98 0.00 3.02
422 732 3.221771 CCTTGACAATGGACCACTTGAA 58.778 45.455 18.03 7.62 0.00 2.69
423 733 3.636300 CCTTGACAATGGACCACTTGAAA 59.364 43.478 18.03 12.44 0.00 2.69
424 734 4.499696 CCTTGACAATGGACCACTTGAAAC 60.500 45.833 18.03 11.49 0.00 2.78
425 735 3.625853 TGACAATGGACCACTTGAAACA 58.374 40.909 18.03 13.07 0.00 2.83
426 736 3.631686 TGACAATGGACCACTTGAAACAG 59.368 43.478 18.03 0.00 0.00 3.16
427 737 2.362077 ACAATGGACCACTTGAAACAGC 59.638 45.455 18.03 0.00 0.00 4.40
428 738 1.620822 ATGGACCACTTGAAACAGCC 58.379 50.000 0.00 0.00 0.00 4.85
429 739 0.550914 TGGACCACTTGAAACAGCCT 59.449 50.000 0.00 0.00 0.00 4.58
430 740 1.239347 GGACCACTTGAAACAGCCTC 58.761 55.000 0.00 0.00 0.00 4.70
431 741 1.476833 GGACCACTTGAAACAGCCTCA 60.477 52.381 0.00 0.00 0.00 3.86
432 742 2.508526 GACCACTTGAAACAGCCTCAT 58.491 47.619 0.00 0.00 0.00 2.90
433 743 2.485814 GACCACTTGAAACAGCCTCATC 59.514 50.000 0.00 0.00 0.00 2.92
434 744 1.466167 CCACTTGAAACAGCCTCATCG 59.534 52.381 0.00 0.00 0.00 3.84
435 745 2.146342 CACTTGAAACAGCCTCATCGT 58.854 47.619 0.00 0.00 0.00 3.73
436 746 2.158449 CACTTGAAACAGCCTCATCGTC 59.842 50.000 0.00 0.00 0.00 4.20
437 747 2.037772 ACTTGAAACAGCCTCATCGTCT 59.962 45.455 0.00 0.00 0.00 4.18
438 748 2.839486 TGAAACAGCCTCATCGTCTT 57.161 45.000 0.00 0.00 0.00 3.01
439 749 3.126001 TGAAACAGCCTCATCGTCTTT 57.874 42.857 0.00 0.00 0.00 2.52
440 750 2.807967 TGAAACAGCCTCATCGTCTTTG 59.192 45.455 0.00 0.00 0.00 2.77
441 751 2.550830 AACAGCCTCATCGTCTTTGT 57.449 45.000 0.00 0.00 0.00 2.83
442 752 1.800805 ACAGCCTCATCGTCTTTGTG 58.199 50.000 0.00 0.00 0.00 3.33
443 753 1.344438 ACAGCCTCATCGTCTTTGTGA 59.656 47.619 0.00 0.00 0.00 3.58
444 754 2.027745 ACAGCCTCATCGTCTTTGTGAT 60.028 45.455 0.00 0.00 0.00 3.06
445 755 2.350804 CAGCCTCATCGTCTTTGTGATG 59.649 50.000 0.00 0.00 42.61 3.07
446 756 1.667724 GCCTCATCGTCTTTGTGATGG 59.332 52.381 2.72 0.00 41.78 3.51
447 757 1.667724 CCTCATCGTCTTTGTGATGGC 59.332 52.381 2.72 0.00 41.78 4.40
448 758 2.349590 CTCATCGTCTTTGTGATGGCA 58.650 47.619 0.00 0.00 41.78 4.92
449 759 2.743664 CTCATCGTCTTTGTGATGGCAA 59.256 45.455 0.00 0.00 41.78 4.52
450 760 2.483877 TCATCGTCTTTGTGATGGCAAC 59.516 45.455 0.00 0.00 41.78 4.17
451 761 2.254546 TCGTCTTTGTGATGGCAACT 57.745 45.000 0.00 0.00 37.61 3.16
452 762 1.872952 TCGTCTTTGTGATGGCAACTG 59.127 47.619 0.00 0.00 37.61 3.16
453 763 1.603802 CGTCTTTGTGATGGCAACTGT 59.396 47.619 0.00 0.00 37.61 3.55
454 764 2.602933 CGTCTTTGTGATGGCAACTGTG 60.603 50.000 0.00 0.00 37.61 3.66
467 777 3.867055 CAACTGTGCACATATCGGATC 57.133 47.619 22.00 0.00 0.00 3.36
468 778 3.197265 CAACTGTGCACATATCGGATCA 58.803 45.455 22.00 0.00 0.00 2.92
469 779 3.103447 ACTGTGCACATATCGGATCAG 57.897 47.619 22.00 6.93 0.00 2.90
470 780 1.797046 CTGTGCACATATCGGATCAGC 59.203 52.381 22.00 0.00 0.00 4.26
471 781 1.151668 GTGCACATATCGGATCAGCC 58.848 55.000 13.17 0.00 0.00 4.85
472 782 0.758123 TGCACATATCGGATCAGCCA 59.242 50.000 0.00 0.00 35.94 4.75
473 783 1.151668 GCACATATCGGATCAGCCAC 58.848 55.000 0.00 0.00 35.94 5.01
474 784 1.541015 GCACATATCGGATCAGCCACA 60.541 52.381 0.00 0.00 35.94 4.17
475 785 2.138320 CACATATCGGATCAGCCACAC 58.862 52.381 0.00 0.00 35.94 3.82
476 786 1.762370 ACATATCGGATCAGCCACACA 59.238 47.619 0.00 0.00 35.94 3.72
477 787 2.224137 ACATATCGGATCAGCCACACAG 60.224 50.000 0.00 0.00 35.94 3.66
478 788 0.752658 TATCGGATCAGCCACACAGG 59.247 55.000 0.00 0.00 41.84 4.00
479 789 0.977627 ATCGGATCAGCCACACAGGA 60.978 55.000 0.00 0.00 41.22 3.86
480 790 1.191489 TCGGATCAGCCACACAGGAA 61.191 55.000 0.00 0.00 41.22 3.36
481 791 0.321564 CGGATCAGCCACACAGGAAA 60.322 55.000 0.00 0.00 41.22 3.13
482 792 1.881925 CGGATCAGCCACACAGGAAAA 60.882 52.381 0.00 0.00 41.22 2.29
483 793 2.450476 GGATCAGCCACACAGGAAAAT 58.550 47.619 0.00 0.00 41.22 1.82
484 794 2.165030 GGATCAGCCACACAGGAAAATG 59.835 50.000 0.00 0.00 41.22 2.32
485 795 2.363306 TCAGCCACACAGGAAAATGT 57.637 45.000 0.00 0.00 41.22 2.71
486 796 2.665165 TCAGCCACACAGGAAAATGTT 58.335 42.857 0.00 0.00 41.22 2.71
487 797 3.826524 TCAGCCACACAGGAAAATGTTA 58.173 40.909 0.00 0.00 41.22 2.41
488 798 4.406456 TCAGCCACACAGGAAAATGTTAT 58.594 39.130 0.00 0.00 41.22 1.89
489 799 4.218200 TCAGCCACACAGGAAAATGTTATG 59.782 41.667 0.00 0.00 41.22 1.90
490 800 3.511146 AGCCACACAGGAAAATGTTATGG 59.489 43.478 3.55 3.55 41.22 2.74
491 801 3.509575 GCCACACAGGAAAATGTTATGGA 59.490 43.478 9.90 0.00 41.22 3.41
492 802 4.618227 GCCACACAGGAAAATGTTATGGAC 60.618 45.833 9.90 0.89 41.22 4.02
493 803 4.082245 CCACACAGGAAAATGTTATGGACC 60.082 45.833 2.15 0.00 41.22 4.46
494 804 4.522405 CACACAGGAAAATGTTATGGACCA 59.478 41.667 0.00 0.00 0.00 4.02
495 805 4.522789 ACACAGGAAAATGTTATGGACCAC 59.477 41.667 0.00 0.00 0.00 4.16
496 806 4.082245 CACAGGAAAATGTTATGGACCACC 60.082 45.833 0.00 0.00 0.00 4.61
507 817 2.214376 TGGACCACCAATAGGCAAAG 57.786 50.000 0.00 0.00 43.91 2.77
508 818 0.817654 GGACCACCAATAGGCAAAGC 59.182 55.000 0.00 0.00 39.06 3.51
509 819 1.544724 GACCACCAATAGGCAAAGCA 58.455 50.000 0.00 0.00 39.06 3.91
510 820 1.474077 GACCACCAATAGGCAAAGCAG 59.526 52.381 0.00 0.00 39.06 4.24
511 821 1.203050 ACCACCAATAGGCAAAGCAGT 60.203 47.619 0.00 0.00 39.06 4.40
512 822 1.474077 CCACCAATAGGCAAAGCAGTC 59.526 52.381 0.00 0.00 39.06 3.51
513 823 1.131126 CACCAATAGGCAAAGCAGTCG 59.869 52.381 0.00 0.00 39.06 4.18
514 824 1.003118 ACCAATAGGCAAAGCAGTCGA 59.997 47.619 0.00 0.00 39.06 4.20
515 825 2.083774 CCAATAGGCAAAGCAGTCGAA 58.916 47.619 0.00 0.00 0.00 3.71
516 826 2.487762 CCAATAGGCAAAGCAGTCGAAA 59.512 45.455 0.00 0.00 0.00 3.46
517 827 3.057596 CCAATAGGCAAAGCAGTCGAAAA 60.058 43.478 0.00 0.00 0.00 2.29
518 828 3.831715 ATAGGCAAAGCAGTCGAAAAC 57.168 42.857 0.00 0.00 0.00 2.43
519 829 1.388547 AGGCAAAGCAGTCGAAAACA 58.611 45.000 0.00 0.00 0.00 2.83
520 830 1.748493 AGGCAAAGCAGTCGAAAACAA 59.252 42.857 0.00 0.00 0.00 2.83
521 831 2.362077 AGGCAAAGCAGTCGAAAACAAT 59.638 40.909 0.00 0.00 0.00 2.71
522 832 3.568007 AGGCAAAGCAGTCGAAAACAATA 59.432 39.130 0.00 0.00 0.00 1.90
523 833 3.914364 GGCAAAGCAGTCGAAAACAATAG 59.086 43.478 0.00 0.00 0.00 1.73
524 834 4.537015 GCAAAGCAGTCGAAAACAATAGT 58.463 39.130 0.00 0.00 0.00 2.12
525 835 4.379793 GCAAAGCAGTCGAAAACAATAGTG 59.620 41.667 0.00 0.00 0.00 2.74
526 836 3.813529 AGCAGTCGAAAACAATAGTGC 57.186 42.857 0.00 0.00 38.33 4.40
527 837 2.484264 AGCAGTCGAAAACAATAGTGCC 59.516 45.455 0.00 0.00 38.74 5.01
528 838 2.484264 GCAGTCGAAAACAATAGTGCCT 59.516 45.455 0.00 0.00 33.18 4.75
529 839 3.682858 GCAGTCGAAAACAATAGTGCCTA 59.317 43.478 0.00 0.00 33.18 3.93
530 840 4.201724 GCAGTCGAAAACAATAGTGCCTAG 60.202 45.833 0.00 0.00 33.18 3.02
531 841 3.933332 AGTCGAAAACAATAGTGCCTAGC 59.067 43.478 0.00 0.00 0.00 3.42
532 842 3.933332 GTCGAAAACAATAGTGCCTAGCT 59.067 43.478 0.00 0.00 0.00 3.32
533 843 5.105473 AGTCGAAAACAATAGTGCCTAGCTA 60.105 40.000 0.00 0.00 0.00 3.32
534 844 5.232414 GTCGAAAACAATAGTGCCTAGCTAG 59.768 44.000 14.20 14.20 0.00 3.42
535 845 4.508124 CGAAAACAATAGTGCCTAGCTAGG 59.492 45.833 32.12 32.12 46.42 3.02
544 854 1.832912 CCTAGCTAGGCTGTTGGGG 59.167 63.158 26.62 0.88 40.10 4.96
545 855 1.147153 CTAGCTAGGCTGTTGGGGC 59.853 63.158 13.32 0.00 40.10 5.80
553 863 3.723772 GCTGTTGGGGCCAATTTTT 57.276 47.368 4.39 0.00 38.28 1.94
594 904 3.093172 CCCCCTCCCCAGCTTCTC 61.093 72.222 0.00 0.00 0.00 2.87
595 905 3.093172 CCCCTCCCCAGCTTCTCC 61.093 72.222 0.00 0.00 0.00 3.71
596 906 3.093172 CCCTCCCCAGCTTCTCCC 61.093 72.222 0.00 0.00 0.00 4.30
597 907 2.285668 CCTCCCCAGCTTCTCCCA 60.286 66.667 0.00 0.00 0.00 4.37
598 908 2.373707 CCTCCCCAGCTTCTCCCAG 61.374 68.421 0.00 0.00 0.00 4.45
599 909 1.306482 CTCCCCAGCTTCTCCCAGA 60.306 63.158 0.00 0.00 0.00 3.86
600 910 0.911525 CTCCCCAGCTTCTCCCAGAA 60.912 60.000 0.00 0.00 32.50 3.02
644 954 7.244558 ACTACTAGTTTACAGGTTAGGGTTCT 58.755 38.462 0.00 0.00 0.00 3.01
906 1257 3.368190 CTGCTCGCTCACTCCCCTG 62.368 68.421 0.00 0.00 0.00 4.45
907 1258 4.828925 GCTCGCTCACTCCCCTGC 62.829 72.222 0.00 0.00 0.00 4.85
908 1259 3.073735 CTCGCTCACTCCCCTGCT 61.074 66.667 0.00 0.00 0.00 4.24
909 1260 3.071206 TCGCTCACTCCCCTGCTC 61.071 66.667 0.00 0.00 0.00 4.26
1118 1508 1.790818 AGGGTTAGGTGCTAGTAGGC 58.209 55.000 0.00 0.00 0.00 3.93
1119 1509 0.757512 GGGTTAGGTGCTAGTAGGCC 59.242 60.000 0.00 0.00 0.00 5.19
1120 1510 0.388294 GGTTAGGTGCTAGTAGGCCG 59.612 60.000 0.00 0.00 0.00 6.13
1121 1511 1.396653 GTTAGGTGCTAGTAGGCCGA 58.603 55.000 0.00 0.00 0.00 5.54
1122 1512 1.337387 GTTAGGTGCTAGTAGGCCGAG 59.663 57.143 0.00 0.00 0.00 4.63
1123 1513 0.549950 TAGGTGCTAGTAGGCCGAGT 59.450 55.000 0.00 0.00 0.00 4.18
1124 1514 0.549950 AGGTGCTAGTAGGCCGAGTA 59.450 55.000 0.00 0.00 0.00 2.59
1125 1515 0.953003 GGTGCTAGTAGGCCGAGTAG 59.047 60.000 20.29 20.29 0.00 2.57
1126 1516 0.953003 GTGCTAGTAGGCCGAGTAGG 59.047 60.000 24.23 10.17 44.97 3.18
1399 1808 1.351017 CACTGTGGAGCCCCTTTTCTA 59.649 52.381 0.00 0.00 0.00 2.10
1505 1914 1.017387 GAAGGCGTTTCTATGGCTGG 58.983 55.000 0.00 0.00 44.69 4.85
1866 2307 4.199310 GTTTGTGCAAGCTATGGGAGATA 58.801 43.478 0.00 0.00 0.00 1.98
1969 2410 0.681243 GGAGTTGGCCAAGCTTAGGG 60.681 60.000 21.21 7.60 0.00 3.53
2062 2503 2.409064 TGGTAGGGTGGACAAGAAGA 57.591 50.000 0.00 0.00 0.00 2.87
2192 2648 3.900446 GCATTTTGCAGAGCCAAGT 57.100 47.368 0.00 0.00 44.26 3.16
2326 2782 1.020437 GTATGGCAGCAAGGAGAAGC 58.980 55.000 0.00 0.00 0.00 3.86
2701 3205 4.599047 TTTCTGTGGTTAATTGGGCTTG 57.401 40.909 0.00 0.00 0.00 4.01
2707 3211 1.266178 GTTAATTGGGCTTGGTGGCT 58.734 50.000 0.00 0.00 41.48 4.75
2750 3254 1.367141 ACCCTAGGCCTACTAAACCCA 59.633 52.381 8.91 0.00 0.00 4.51
2992 3524 2.049433 AGTTCAACCGCCGACTCG 60.049 61.111 0.00 0.00 0.00 4.18
3009 3541 0.981183 TCGCCAACAAGGTACTGGAT 59.019 50.000 2.39 0.00 40.86 3.41
3075 3607 5.250082 CAGGGGAAGATCATTCATGGAGATA 59.750 44.000 0.00 0.00 0.00 1.98
3230 3802 9.366216 GAGTTTTGGTAGTTTTTGTGAGATTTT 57.634 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 8.088365 GCTAACAAAGTTTTCAACATATCCCTT 58.912 33.333 0.00 0.00 0.00 3.95
6 7 7.232534 TGCTAACAAAGTTTTCAACATATCCCT 59.767 33.333 0.00 0.00 0.00 4.20
7 8 7.328493 GTGCTAACAAAGTTTTCAACATATCCC 59.672 37.037 0.00 0.00 0.00 3.85
8 9 7.060633 CGTGCTAACAAAGTTTTCAACATATCC 59.939 37.037 0.00 0.00 0.00 2.59
9 10 7.060633 CCGTGCTAACAAAGTTTTCAACATATC 59.939 37.037 0.00 0.00 0.00 1.63
10 11 6.861055 CCGTGCTAACAAAGTTTTCAACATAT 59.139 34.615 0.00 0.00 0.00 1.78
11 12 6.038382 TCCGTGCTAACAAAGTTTTCAACATA 59.962 34.615 0.00 0.00 0.00 2.29
12 13 5.040635 CCGTGCTAACAAAGTTTTCAACAT 58.959 37.500 0.00 0.00 0.00 2.71
13 14 4.156190 TCCGTGCTAACAAAGTTTTCAACA 59.844 37.500 0.00 0.00 0.00 3.33
14 15 4.664188 TCCGTGCTAACAAAGTTTTCAAC 58.336 39.130 0.00 0.00 0.00 3.18
15 16 4.966965 TCCGTGCTAACAAAGTTTTCAA 57.033 36.364 0.00 0.00 0.00 2.69
16 17 4.156190 TGTTCCGTGCTAACAAAGTTTTCA 59.844 37.500 0.00 0.00 34.04 2.69
17 18 4.497966 GTGTTCCGTGCTAACAAAGTTTTC 59.502 41.667 0.00 0.00 38.50 2.29
18 19 4.157105 AGTGTTCCGTGCTAACAAAGTTTT 59.843 37.500 0.00 0.00 38.50 2.43
19 20 3.692593 AGTGTTCCGTGCTAACAAAGTTT 59.307 39.130 0.00 0.00 38.50 2.66
20 21 3.275999 AGTGTTCCGTGCTAACAAAGTT 58.724 40.909 0.00 0.00 38.50 2.66
21 22 2.870411 GAGTGTTCCGTGCTAACAAAGT 59.130 45.455 0.00 0.00 38.50 2.66
22 23 2.223377 GGAGTGTTCCGTGCTAACAAAG 59.777 50.000 0.00 0.00 38.50 2.77
23 24 2.215196 GGAGTGTTCCGTGCTAACAAA 58.785 47.619 0.00 0.00 38.50 2.83
24 25 1.541670 GGGAGTGTTCCGTGCTAACAA 60.542 52.381 0.00 0.00 45.04 2.83
25 26 0.034337 GGGAGTGTTCCGTGCTAACA 59.966 55.000 0.00 0.00 45.04 2.41
26 27 0.320697 AGGGAGTGTTCCGTGCTAAC 59.679 55.000 0.00 0.00 45.04 2.34
27 28 0.606604 GAGGGAGTGTTCCGTGCTAA 59.393 55.000 0.00 0.00 45.04 3.09
28 29 0.251653 AGAGGGAGTGTTCCGTGCTA 60.252 55.000 0.00 0.00 45.04 3.49
29 30 1.534235 AGAGGGAGTGTTCCGTGCT 60.534 57.895 0.00 0.00 45.04 4.40
30 31 1.374758 CAGAGGGAGTGTTCCGTGC 60.375 63.158 0.00 0.00 45.04 5.34
31 32 1.254026 TACAGAGGGAGTGTTCCGTG 58.746 55.000 0.00 0.00 45.04 4.94
32 33 2.005370 TTACAGAGGGAGTGTTCCGT 57.995 50.000 0.00 0.00 45.04 4.69
33 34 2.299297 AGTTTACAGAGGGAGTGTTCCG 59.701 50.000 0.00 0.00 45.04 4.30
34 35 4.527427 AGTAGTTTACAGAGGGAGTGTTCC 59.473 45.833 0.00 0.00 43.23 3.62
35 36 5.010820 ACAGTAGTTTACAGAGGGAGTGTTC 59.989 44.000 0.00 0.00 0.00 3.18
36 37 4.900054 ACAGTAGTTTACAGAGGGAGTGTT 59.100 41.667 0.00 0.00 0.00 3.32
37 38 4.481072 ACAGTAGTTTACAGAGGGAGTGT 58.519 43.478 0.00 0.00 0.00 3.55
38 39 6.433404 TCTTACAGTAGTTTACAGAGGGAGTG 59.567 42.308 0.00 0.00 0.00 3.51
39 40 6.550163 TCTTACAGTAGTTTACAGAGGGAGT 58.450 40.000 0.00 0.00 0.00 3.85
40 41 7.467539 CGATCTTACAGTAGTTTACAGAGGGAG 60.468 44.444 0.00 0.00 0.00 4.30
41 42 6.318144 CGATCTTACAGTAGTTTACAGAGGGA 59.682 42.308 0.00 0.00 0.00 4.20
42 43 6.095160 ACGATCTTACAGTAGTTTACAGAGGG 59.905 42.308 0.00 0.00 0.00 4.30
43 44 7.086230 ACGATCTTACAGTAGTTTACAGAGG 57.914 40.000 0.00 0.00 0.00 3.69
44 45 8.967552 AAACGATCTTACAGTAGTTTACAGAG 57.032 34.615 0.00 0.00 31.14 3.35
77 78 7.331089 AGAATTCCCCTTAACAAGTACTCTT 57.669 36.000 0.65 0.00 0.00 2.85
78 79 6.954352 AGAATTCCCCTTAACAAGTACTCT 57.046 37.500 0.65 0.00 0.00 3.24
79 80 7.612668 GAAGAATTCCCCTTAACAAGTACTC 57.387 40.000 0.65 0.00 39.83 2.59
95 96 5.007136 CGTGCTTAGAATGAGGGAAGAATTC 59.993 44.000 0.00 0.00 46.67 2.17
96 97 4.878397 CGTGCTTAGAATGAGGGAAGAATT 59.122 41.667 0.00 0.00 0.00 2.17
97 98 4.162320 TCGTGCTTAGAATGAGGGAAGAAT 59.838 41.667 0.00 0.00 0.00 2.40
98 99 3.513912 TCGTGCTTAGAATGAGGGAAGAA 59.486 43.478 0.00 0.00 0.00 2.52
99 100 3.096852 TCGTGCTTAGAATGAGGGAAGA 58.903 45.455 0.00 0.00 0.00 2.87
130 131 1.509787 GTGCATAGTGTTGTGCGCG 60.510 57.895 0.00 0.00 43.62 6.86
236 237 1.355210 GGGAACTGTTGTGCACACG 59.645 57.895 21.56 13.47 0.00 4.49
254 255 4.321217 CGACTGTTTACAAGAGAGCTTACG 59.679 45.833 0.00 0.00 31.81 3.18
255 256 4.090210 GCGACTGTTTACAAGAGAGCTTAC 59.910 45.833 0.00 0.00 31.81 2.34
267 270 3.466836 GATTGTGAACGCGACTGTTTAC 58.533 45.455 15.93 3.89 38.44 2.01
268 271 2.154198 CGATTGTGAACGCGACTGTTTA 59.846 45.455 15.93 0.00 30.75 2.01
269 272 1.070843 CGATTGTGAACGCGACTGTTT 60.071 47.619 15.93 0.00 30.75 2.83
270 273 0.506932 CGATTGTGAACGCGACTGTT 59.493 50.000 15.93 0.00 34.02 3.16
271 274 1.886861 GCGATTGTGAACGCGACTGT 61.887 55.000 15.93 0.00 44.91 3.55
272 275 1.225475 GCGATTGTGAACGCGACTG 60.225 57.895 15.93 0.00 44.91 3.51
273 276 3.156334 GCGATTGTGAACGCGACT 58.844 55.556 15.93 0.00 44.91 4.18
278 281 2.686816 GGGGGTGCGATTGTGAACG 61.687 63.158 0.00 0.00 0.00 3.95
279 282 1.303317 AGGGGGTGCGATTGTGAAC 60.303 57.895 0.00 0.00 0.00 3.18
280 283 1.002624 GAGGGGGTGCGATTGTGAA 60.003 57.895 0.00 0.00 0.00 3.18
281 284 1.899437 GAGAGGGGGTGCGATTGTGA 61.899 60.000 0.00 0.00 0.00 3.58
282 285 1.450312 GAGAGGGGGTGCGATTGTG 60.450 63.158 0.00 0.00 0.00 3.33
283 286 1.201429 AAGAGAGGGGGTGCGATTGT 61.201 55.000 0.00 0.00 0.00 2.71
284 287 0.745845 CAAGAGAGGGGGTGCGATTG 60.746 60.000 0.00 0.00 0.00 2.67
285 288 1.201429 ACAAGAGAGGGGGTGCGATT 61.201 55.000 0.00 0.00 0.00 3.34
286 289 0.325296 TACAAGAGAGGGGGTGCGAT 60.325 55.000 0.00 0.00 0.00 4.58
287 290 0.543410 TTACAAGAGAGGGGGTGCGA 60.543 55.000 0.00 0.00 0.00 5.10
288 291 0.391263 GTTACAAGAGAGGGGGTGCG 60.391 60.000 0.00 0.00 0.00 5.34
289 292 0.984995 AGTTACAAGAGAGGGGGTGC 59.015 55.000 0.00 0.00 0.00 5.01
290 293 1.978580 ACAGTTACAAGAGAGGGGGTG 59.021 52.381 0.00 0.00 0.00 4.61
291 294 2.258109 GACAGTTACAAGAGAGGGGGT 58.742 52.381 0.00 0.00 0.00 4.95
292 295 1.204941 CGACAGTTACAAGAGAGGGGG 59.795 57.143 0.00 0.00 0.00 5.40
293 296 1.404315 GCGACAGTTACAAGAGAGGGG 60.404 57.143 0.00 0.00 0.00 4.79
294 297 1.404315 GGCGACAGTTACAAGAGAGGG 60.404 57.143 0.00 0.00 0.00 4.30
295 298 1.404315 GGGCGACAGTTACAAGAGAGG 60.404 57.143 0.00 0.00 0.00 3.69
296 299 1.404315 GGGGCGACAGTTACAAGAGAG 60.404 57.143 0.00 0.00 0.00 3.20
297 300 0.606604 GGGGCGACAGTTACAAGAGA 59.393 55.000 0.00 0.00 0.00 3.10
298 301 0.608640 AGGGGCGACAGTTACAAGAG 59.391 55.000 0.00 0.00 0.00 2.85
299 302 1.001633 GAAGGGGCGACAGTTACAAGA 59.998 52.381 0.00 0.00 0.00 3.02
300 303 1.270625 TGAAGGGGCGACAGTTACAAG 60.271 52.381 0.00 0.00 0.00 3.16
301 304 0.759959 TGAAGGGGCGACAGTTACAA 59.240 50.000 0.00 0.00 0.00 2.41
302 305 0.320374 CTGAAGGGGCGACAGTTACA 59.680 55.000 0.00 0.00 0.00 2.41
303 306 0.391263 CCTGAAGGGGCGACAGTTAC 60.391 60.000 0.00 0.00 0.00 2.50
304 307 1.980052 CCTGAAGGGGCGACAGTTA 59.020 57.895 0.00 0.00 0.00 2.24
305 308 2.750350 CCTGAAGGGGCGACAGTT 59.250 61.111 0.00 0.00 0.00 3.16
334 644 8.888716 TGCATTATTCGTTGATTACAGTTACAT 58.111 29.630 0.00 0.00 0.00 2.29
335 645 8.172484 GTGCATTATTCGTTGATTACAGTTACA 58.828 33.333 0.00 0.00 0.00 2.41
336 646 8.172484 TGTGCATTATTCGTTGATTACAGTTAC 58.828 33.333 0.00 0.00 0.00 2.50
337 647 8.172484 GTGTGCATTATTCGTTGATTACAGTTA 58.828 33.333 0.00 0.00 0.00 2.24
338 648 7.021196 GTGTGCATTATTCGTTGATTACAGTT 58.979 34.615 0.00 0.00 0.00 3.16
339 649 6.148645 TGTGTGCATTATTCGTTGATTACAGT 59.851 34.615 0.00 0.00 0.00 3.55
340 650 6.541969 TGTGTGCATTATTCGTTGATTACAG 58.458 36.000 0.00 0.00 0.00 2.74
341 651 6.487689 TGTGTGCATTATTCGTTGATTACA 57.512 33.333 0.00 0.00 0.00 2.41
342 652 7.910162 AGATTGTGTGCATTATTCGTTGATTAC 59.090 33.333 0.00 0.00 0.00 1.89
343 653 7.984391 AGATTGTGTGCATTATTCGTTGATTA 58.016 30.769 0.00 0.00 0.00 1.75
344 654 6.855836 AGATTGTGTGCATTATTCGTTGATT 58.144 32.000 0.00 0.00 0.00 2.57
345 655 6.441093 AGATTGTGTGCATTATTCGTTGAT 57.559 33.333 0.00 0.00 0.00 2.57
346 656 5.878332 AGATTGTGTGCATTATTCGTTGA 57.122 34.783 0.00 0.00 0.00 3.18
347 657 7.216881 CAGTAAGATTGTGTGCATTATTCGTTG 59.783 37.037 0.00 0.00 0.00 4.10
348 658 7.243487 CAGTAAGATTGTGTGCATTATTCGTT 58.757 34.615 0.00 0.00 0.00 3.85
349 659 6.675486 GCAGTAAGATTGTGTGCATTATTCGT 60.675 38.462 0.00 0.00 34.18 3.85
350 660 5.678483 GCAGTAAGATTGTGTGCATTATTCG 59.322 40.000 0.00 0.00 34.18 3.34
351 661 6.789262 AGCAGTAAGATTGTGTGCATTATTC 58.211 36.000 0.00 0.00 36.57 1.75
352 662 6.375174 TGAGCAGTAAGATTGTGTGCATTATT 59.625 34.615 0.00 0.00 36.57 1.40
353 663 5.882000 TGAGCAGTAAGATTGTGTGCATTAT 59.118 36.000 0.00 0.00 36.57 1.28
354 664 5.244755 TGAGCAGTAAGATTGTGTGCATTA 58.755 37.500 0.00 0.00 36.57 1.90
355 665 4.074259 TGAGCAGTAAGATTGTGTGCATT 58.926 39.130 0.00 0.00 36.57 3.56
356 666 3.678289 TGAGCAGTAAGATTGTGTGCAT 58.322 40.909 0.00 0.00 36.57 3.96
357 667 3.124578 TGAGCAGTAAGATTGTGTGCA 57.875 42.857 0.00 0.00 36.57 4.57
358 668 3.242220 CGATGAGCAGTAAGATTGTGTGC 60.242 47.826 0.00 0.00 0.00 4.57
359 669 3.928992 ACGATGAGCAGTAAGATTGTGTG 59.071 43.478 0.00 0.00 0.00 3.82
360 670 4.081972 AGACGATGAGCAGTAAGATTGTGT 60.082 41.667 0.00 0.00 0.00 3.72
361 671 4.428209 AGACGATGAGCAGTAAGATTGTG 58.572 43.478 0.00 0.00 0.00 3.33
362 672 4.400884 AGAGACGATGAGCAGTAAGATTGT 59.599 41.667 0.00 0.00 0.00 2.71
363 673 4.930963 AGAGACGATGAGCAGTAAGATTG 58.069 43.478 0.00 0.00 0.00 2.67
364 674 5.126222 TGAAGAGACGATGAGCAGTAAGATT 59.874 40.000 0.00 0.00 0.00 2.40
365 675 4.642437 TGAAGAGACGATGAGCAGTAAGAT 59.358 41.667 0.00 0.00 0.00 2.40
366 676 4.010349 TGAAGAGACGATGAGCAGTAAGA 58.990 43.478 0.00 0.00 0.00 2.10
367 677 4.362932 TGAAGAGACGATGAGCAGTAAG 57.637 45.455 0.00 0.00 0.00 2.34
368 678 4.991153 ATGAAGAGACGATGAGCAGTAA 57.009 40.909 0.00 0.00 0.00 2.24
369 679 4.991153 AATGAAGAGACGATGAGCAGTA 57.009 40.909 0.00 0.00 0.00 2.74
370 680 3.883830 AATGAAGAGACGATGAGCAGT 57.116 42.857 0.00 0.00 0.00 4.40
371 681 5.542616 AAAAATGAAGAGACGATGAGCAG 57.457 39.130 0.00 0.00 0.00 4.24
372 682 5.931724 TGTAAAAATGAAGAGACGATGAGCA 59.068 36.000 0.00 0.00 0.00 4.26
373 683 6.408858 TGTAAAAATGAAGAGACGATGAGC 57.591 37.500 0.00 0.00 0.00 4.26
374 684 6.091305 TGCTGTAAAAATGAAGAGACGATGAG 59.909 38.462 0.00 0.00 0.00 2.90
375 685 5.931724 TGCTGTAAAAATGAAGAGACGATGA 59.068 36.000 0.00 0.00 0.00 2.92
376 686 6.169419 TGCTGTAAAAATGAAGAGACGATG 57.831 37.500 0.00 0.00 0.00 3.84
377 687 6.348540 GGTTGCTGTAAAAATGAAGAGACGAT 60.349 38.462 0.00 0.00 0.00 3.73
378 688 5.049680 GGTTGCTGTAAAAATGAAGAGACGA 60.050 40.000 0.00 0.00 0.00 4.20
379 689 5.049405 AGGTTGCTGTAAAAATGAAGAGACG 60.049 40.000 0.00 0.00 0.00 4.18
380 690 6.319141 AGGTTGCTGTAAAAATGAAGAGAC 57.681 37.500 0.00 0.00 0.00 3.36
381 691 6.545666 TCAAGGTTGCTGTAAAAATGAAGAGA 59.454 34.615 0.00 0.00 0.00 3.10
382 692 6.638468 GTCAAGGTTGCTGTAAAAATGAAGAG 59.362 38.462 0.00 0.00 0.00 2.85
383 693 6.096141 TGTCAAGGTTGCTGTAAAAATGAAGA 59.904 34.615 0.00 0.00 0.00 2.87
384 694 6.272318 TGTCAAGGTTGCTGTAAAAATGAAG 58.728 36.000 0.00 0.00 0.00 3.02
385 695 6.214191 TGTCAAGGTTGCTGTAAAAATGAA 57.786 33.333 0.00 0.00 0.00 2.57
386 696 5.843673 TGTCAAGGTTGCTGTAAAAATGA 57.156 34.783 0.00 0.00 0.00 2.57
387 697 6.073657 CCATTGTCAAGGTTGCTGTAAAAATG 60.074 38.462 0.00 0.00 0.00 2.32
388 698 5.990996 CCATTGTCAAGGTTGCTGTAAAAAT 59.009 36.000 0.00 0.00 0.00 1.82
389 699 5.127845 TCCATTGTCAAGGTTGCTGTAAAAA 59.872 36.000 0.00 0.00 0.00 1.94
390 700 4.646945 TCCATTGTCAAGGTTGCTGTAAAA 59.353 37.500 0.00 0.00 0.00 1.52
391 701 4.037446 GTCCATTGTCAAGGTTGCTGTAAA 59.963 41.667 0.00 0.00 0.00 2.01
392 702 3.568007 GTCCATTGTCAAGGTTGCTGTAA 59.432 43.478 0.00 0.00 0.00 2.41
393 703 3.146066 GTCCATTGTCAAGGTTGCTGTA 58.854 45.455 0.00 0.00 0.00 2.74
394 704 1.956477 GTCCATTGTCAAGGTTGCTGT 59.044 47.619 0.00 0.00 0.00 4.40
395 705 1.270550 GGTCCATTGTCAAGGTTGCTG 59.729 52.381 0.00 0.00 0.00 4.41
396 706 1.133513 TGGTCCATTGTCAAGGTTGCT 60.134 47.619 0.00 0.00 0.00 3.91
397 707 1.000274 GTGGTCCATTGTCAAGGTTGC 60.000 52.381 0.00 0.00 0.00 4.17
398 708 2.586425 AGTGGTCCATTGTCAAGGTTG 58.414 47.619 0.00 0.00 0.00 3.77
399 709 2.958355 CAAGTGGTCCATTGTCAAGGTT 59.042 45.455 0.00 0.00 0.00 3.50
400 710 2.174639 TCAAGTGGTCCATTGTCAAGGT 59.825 45.455 0.00 0.00 0.00 3.50
401 711 2.862541 TCAAGTGGTCCATTGTCAAGG 58.137 47.619 0.00 0.00 0.00 3.61
402 712 4.097741 TGTTTCAAGTGGTCCATTGTCAAG 59.902 41.667 0.00 0.00 0.00 3.02
403 713 4.019858 TGTTTCAAGTGGTCCATTGTCAA 58.980 39.130 0.00 0.00 0.00 3.18
404 714 3.625853 TGTTTCAAGTGGTCCATTGTCA 58.374 40.909 0.00 1.49 0.00 3.58
405 715 3.550842 GCTGTTTCAAGTGGTCCATTGTC 60.551 47.826 0.00 0.00 0.00 3.18
406 716 2.362077 GCTGTTTCAAGTGGTCCATTGT 59.638 45.455 0.00 0.00 0.00 2.71
407 717 2.288395 GGCTGTTTCAAGTGGTCCATTG 60.288 50.000 0.00 1.38 0.00 2.82
408 718 1.963515 GGCTGTTTCAAGTGGTCCATT 59.036 47.619 0.00 0.00 0.00 3.16
409 719 1.145738 AGGCTGTTTCAAGTGGTCCAT 59.854 47.619 0.00 0.00 0.00 3.41
410 720 0.550914 AGGCTGTTTCAAGTGGTCCA 59.449 50.000 0.00 0.00 0.00 4.02
411 721 1.239347 GAGGCTGTTTCAAGTGGTCC 58.761 55.000 0.00 0.00 0.00 4.46
412 722 1.967319 TGAGGCTGTTTCAAGTGGTC 58.033 50.000 0.00 0.00 0.00 4.02
413 723 2.508526 GATGAGGCTGTTTCAAGTGGT 58.491 47.619 0.00 0.00 0.00 4.16
414 724 1.466167 CGATGAGGCTGTTTCAAGTGG 59.534 52.381 0.00 0.00 0.00 4.00
415 725 2.146342 ACGATGAGGCTGTTTCAAGTG 58.854 47.619 0.00 0.00 0.00 3.16
416 726 2.037772 AGACGATGAGGCTGTTTCAAGT 59.962 45.455 0.00 0.00 36.36 3.16
417 727 2.693069 AGACGATGAGGCTGTTTCAAG 58.307 47.619 0.00 0.00 36.36 3.02
418 728 2.839486 AGACGATGAGGCTGTTTCAA 57.161 45.000 0.00 0.00 36.36 2.69
419 729 2.807967 CAAAGACGATGAGGCTGTTTCA 59.192 45.455 0.00 0.00 37.06 2.69
420 730 2.808543 ACAAAGACGATGAGGCTGTTTC 59.191 45.455 0.00 0.00 37.06 2.78
421 731 2.549754 CACAAAGACGATGAGGCTGTTT 59.450 45.455 0.00 0.00 37.06 2.83
422 732 2.146342 CACAAAGACGATGAGGCTGTT 58.854 47.619 0.00 0.00 37.06 3.16
423 733 1.344438 TCACAAAGACGATGAGGCTGT 59.656 47.619 0.00 0.00 37.06 4.40
424 734 2.084610 TCACAAAGACGATGAGGCTG 57.915 50.000 0.00 0.00 37.06 4.85
425 735 2.625737 CATCACAAAGACGATGAGGCT 58.374 47.619 0.00 0.00 42.73 4.58
426 736 1.667724 CCATCACAAAGACGATGAGGC 59.332 52.381 0.00 0.00 41.28 4.70
427 737 1.667724 GCCATCACAAAGACGATGAGG 59.332 52.381 0.00 0.00 41.28 3.86
428 738 2.349590 TGCCATCACAAAGACGATGAG 58.650 47.619 0.00 0.00 41.28 2.90
429 739 2.470983 TGCCATCACAAAGACGATGA 57.529 45.000 0.00 0.00 41.28 2.92
430 740 2.485426 AGTTGCCATCACAAAGACGATG 59.515 45.455 0.00 0.00 39.00 3.84
431 741 2.485426 CAGTTGCCATCACAAAGACGAT 59.515 45.455 0.00 0.00 0.00 3.73
432 742 1.872952 CAGTTGCCATCACAAAGACGA 59.127 47.619 0.00 0.00 0.00 4.20
433 743 1.603802 ACAGTTGCCATCACAAAGACG 59.396 47.619 0.00 0.00 0.00 4.18
434 744 2.859806 GCACAGTTGCCATCACAAAGAC 60.860 50.000 0.00 0.00 43.66 3.01
435 745 1.337703 GCACAGTTGCCATCACAAAGA 59.662 47.619 0.00 0.00 43.66 2.52
436 746 1.774639 GCACAGTTGCCATCACAAAG 58.225 50.000 0.00 0.00 43.66 2.77
437 747 3.963676 GCACAGTTGCCATCACAAA 57.036 47.368 0.00 0.00 43.66 2.83
447 757 3.197265 TGATCCGATATGTGCACAGTTG 58.803 45.455 25.84 18.39 0.00 3.16
448 758 3.461061 CTGATCCGATATGTGCACAGTT 58.539 45.455 25.84 14.72 0.00 3.16
449 759 2.804572 GCTGATCCGATATGTGCACAGT 60.805 50.000 25.84 16.20 0.00 3.55
450 760 1.797046 GCTGATCCGATATGTGCACAG 59.203 52.381 25.84 11.20 0.00 3.66
451 761 1.541015 GGCTGATCCGATATGTGCACA 60.541 52.381 24.08 24.08 0.00 4.57
452 762 1.151668 GGCTGATCCGATATGTGCAC 58.848 55.000 10.75 10.75 0.00 4.57
453 763 0.758123 TGGCTGATCCGATATGTGCA 59.242 50.000 0.00 0.00 37.80 4.57
454 764 1.151668 GTGGCTGATCCGATATGTGC 58.848 55.000 0.00 0.00 37.80 4.57
455 765 2.138320 GTGTGGCTGATCCGATATGTG 58.862 52.381 0.00 0.00 37.80 3.21
456 766 1.762370 TGTGTGGCTGATCCGATATGT 59.238 47.619 0.00 0.00 37.80 2.29
457 767 2.410939 CTGTGTGGCTGATCCGATATG 58.589 52.381 0.00 0.00 37.80 1.78
458 768 1.345741 CCTGTGTGGCTGATCCGATAT 59.654 52.381 0.00 0.00 37.80 1.63
459 769 0.752658 CCTGTGTGGCTGATCCGATA 59.247 55.000 0.00 0.00 37.80 2.92
460 770 0.977627 TCCTGTGTGGCTGATCCGAT 60.978 55.000 0.00 0.00 37.80 4.18
461 771 1.191489 TTCCTGTGTGGCTGATCCGA 61.191 55.000 0.00 0.00 37.80 4.55
462 772 0.321564 TTTCCTGTGTGGCTGATCCG 60.322 55.000 0.00 0.00 37.80 4.18
463 773 1.909700 TTTTCCTGTGTGGCTGATCC 58.090 50.000 0.00 0.00 35.26 3.36
464 774 2.821969 ACATTTTCCTGTGTGGCTGATC 59.178 45.455 0.00 0.00 35.26 2.92
465 775 2.880443 ACATTTTCCTGTGTGGCTGAT 58.120 42.857 0.00 0.00 35.26 2.90
466 776 2.363306 ACATTTTCCTGTGTGGCTGA 57.637 45.000 0.00 0.00 35.26 4.26
467 777 4.487948 CATAACATTTTCCTGTGTGGCTG 58.512 43.478 0.00 0.00 35.26 4.85
468 778 3.511146 CCATAACATTTTCCTGTGTGGCT 59.489 43.478 0.00 0.00 32.42 4.75
469 779 3.509575 TCCATAACATTTTCCTGTGTGGC 59.490 43.478 0.00 0.00 36.45 5.01
470 780 4.082245 GGTCCATAACATTTTCCTGTGTGG 60.082 45.833 0.00 0.00 37.20 4.17
471 781 4.522405 TGGTCCATAACATTTTCCTGTGTG 59.478 41.667 0.00 0.00 0.00 3.82
472 782 4.522789 GTGGTCCATAACATTTTCCTGTGT 59.477 41.667 0.00 0.00 0.00 3.72
473 783 4.082245 GGTGGTCCATAACATTTTCCTGTG 60.082 45.833 0.00 0.00 0.00 3.66
474 784 4.086457 GGTGGTCCATAACATTTTCCTGT 58.914 43.478 0.00 0.00 0.00 4.00
475 785 4.085733 TGGTGGTCCATAACATTTTCCTG 58.914 43.478 0.00 0.00 39.03 3.86
476 786 4.396357 TGGTGGTCCATAACATTTTCCT 57.604 40.909 0.00 0.00 39.03 3.36
477 787 5.675684 ATTGGTGGTCCATAACATTTTCC 57.324 39.130 0.00 0.00 43.91 3.13
478 788 6.682861 GCCTATTGGTGGTCCATAACATTTTC 60.683 42.308 0.00 0.00 43.91 2.29
479 789 5.128663 GCCTATTGGTGGTCCATAACATTTT 59.871 40.000 0.00 0.00 43.91 1.82
480 790 4.649218 GCCTATTGGTGGTCCATAACATTT 59.351 41.667 0.00 0.00 43.91 2.32
481 791 4.215109 GCCTATTGGTGGTCCATAACATT 58.785 43.478 0.00 0.00 43.91 2.71
482 792 3.204158 TGCCTATTGGTGGTCCATAACAT 59.796 43.478 0.00 0.00 43.91 2.71
483 793 2.578480 TGCCTATTGGTGGTCCATAACA 59.422 45.455 0.00 0.00 43.91 2.41
484 794 3.290948 TGCCTATTGGTGGTCCATAAC 57.709 47.619 0.00 0.00 43.91 1.89
485 795 4.277476 CTTTGCCTATTGGTGGTCCATAA 58.723 43.478 0.00 0.00 43.91 1.90
486 796 3.897239 CTTTGCCTATTGGTGGTCCATA 58.103 45.455 0.00 0.00 43.91 2.74
487 797 2.738743 CTTTGCCTATTGGTGGTCCAT 58.261 47.619 0.00 0.00 43.91 3.41
488 798 1.890573 GCTTTGCCTATTGGTGGTCCA 60.891 52.381 0.00 0.00 42.66 4.02
489 799 0.817654 GCTTTGCCTATTGGTGGTCC 59.182 55.000 0.00 0.00 35.27 4.46
490 800 1.474077 CTGCTTTGCCTATTGGTGGTC 59.526 52.381 0.00 0.00 35.27 4.02
491 801 1.203050 ACTGCTTTGCCTATTGGTGGT 60.203 47.619 0.00 0.00 35.27 4.16
492 802 1.474077 GACTGCTTTGCCTATTGGTGG 59.526 52.381 0.00 0.00 35.27 4.61
493 803 1.131126 CGACTGCTTTGCCTATTGGTG 59.869 52.381 0.00 0.00 35.27 4.17
494 804 1.003118 TCGACTGCTTTGCCTATTGGT 59.997 47.619 0.00 0.00 35.27 3.67
495 805 1.737838 TCGACTGCTTTGCCTATTGG 58.262 50.000 0.00 0.00 0.00 3.16
496 806 3.829886 TTTCGACTGCTTTGCCTATTG 57.170 42.857 0.00 0.00 0.00 1.90
497 807 3.568007 TGTTTTCGACTGCTTTGCCTATT 59.432 39.130 0.00 0.00 0.00 1.73
498 808 3.146066 TGTTTTCGACTGCTTTGCCTAT 58.854 40.909 0.00 0.00 0.00 2.57
499 809 2.566913 TGTTTTCGACTGCTTTGCCTA 58.433 42.857 0.00 0.00 0.00 3.93
500 810 1.388547 TGTTTTCGACTGCTTTGCCT 58.611 45.000 0.00 0.00 0.00 4.75
501 811 2.202295 TTGTTTTCGACTGCTTTGCC 57.798 45.000 0.00 0.00 0.00 4.52
502 812 4.379793 CACTATTGTTTTCGACTGCTTTGC 59.620 41.667 0.00 0.00 0.00 3.68
503 813 4.379793 GCACTATTGTTTTCGACTGCTTTG 59.620 41.667 0.00 0.00 0.00 2.77
504 814 4.537015 GCACTATTGTTTTCGACTGCTTT 58.463 39.130 0.00 0.00 0.00 3.51
505 815 3.058224 GGCACTATTGTTTTCGACTGCTT 60.058 43.478 0.00 0.00 0.00 3.91
506 816 2.484264 GGCACTATTGTTTTCGACTGCT 59.516 45.455 0.00 0.00 0.00 4.24
507 817 2.484264 AGGCACTATTGTTTTCGACTGC 59.516 45.455 0.00 0.00 36.02 4.40
508 818 4.201724 GCTAGGCACTATTGTTTTCGACTG 60.202 45.833 0.00 0.00 41.70 3.51
509 819 3.933332 GCTAGGCACTATTGTTTTCGACT 59.067 43.478 0.00 0.00 41.70 4.18
510 820 3.933332 AGCTAGGCACTATTGTTTTCGAC 59.067 43.478 0.00 0.00 41.70 4.20
511 821 4.202245 AGCTAGGCACTATTGTTTTCGA 57.798 40.909 0.00 0.00 41.70 3.71
512 822 4.508124 CCTAGCTAGGCACTATTGTTTTCG 59.492 45.833 26.62 0.00 41.70 3.46
513 823 5.993106 CCTAGCTAGGCACTATTGTTTTC 57.007 43.478 26.62 0.00 41.70 2.29
526 836 1.832912 CCCCAACAGCCTAGCTAGG 59.167 63.158 32.12 32.12 46.42 3.02
527 837 1.147153 GCCCCAACAGCCTAGCTAG 59.853 63.158 14.20 14.20 36.40 3.42
528 838 3.320359 GCCCCAACAGCCTAGCTA 58.680 61.111 0.00 0.00 36.40 3.32
535 845 3.723772 AAAAATTGGCCCCAACAGC 57.276 47.368 0.00 0.00 38.88 4.40
577 887 3.093172 GAGAAGCTGGGGAGGGGG 61.093 72.222 0.00 0.00 0.00 5.40
578 888 3.093172 GGAGAAGCTGGGGAGGGG 61.093 72.222 0.00 0.00 0.00 4.79
579 889 3.093172 GGGAGAAGCTGGGGAGGG 61.093 72.222 0.00 0.00 0.00 4.30
580 890 2.285668 TGGGAGAAGCTGGGGAGG 60.286 66.667 0.00 0.00 0.00 4.30
581 891 0.911525 TTCTGGGAGAAGCTGGGGAG 60.912 60.000 0.00 0.00 29.50 4.30
582 892 0.253347 ATTCTGGGAGAAGCTGGGGA 60.253 55.000 0.00 0.00 37.69 4.81
583 893 0.182299 GATTCTGGGAGAAGCTGGGG 59.818 60.000 0.00 0.00 37.62 4.96
584 894 0.179062 CGATTCTGGGAGAAGCTGGG 60.179 60.000 0.00 0.00 38.40 4.45
585 895 0.826715 TCGATTCTGGGAGAAGCTGG 59.173 55.000 0.00 0.00 38.40 4.85
586 896 1.480137 ACTCGATTCTGGGAGAAGCTG 59.520 52.381 0.00 0.00 38.40 4.24
587 897 1.859302 ACTCGATTCTGGGAGAAGCT 58.141 50.000 0.00 0.00 38.40 3.74
588 898 3.802948 TTACTCGATTCTGGGAGAAGC 57.197 47.619 0.00 0.00 37.69 3.86
589 899 5.923684 GCTATTTACTCGATTCTGGGAGAAG 59.076 44.000 0.00 0.00 37.69 2.85
590 900 5.362717 TGCTATTTACTCGATTCTGGGAGAA 59.637 40.000 0.00 0.00 38.78 2.87
591 901 4.893524 TGCTATTTACTCGATTCTGGGAGA 59.106 41.667 0.00 0.00 34.40 3.71
592 902 5.201713 TGCTATTTACTCGATTCTGGGAG 57.798 43.478 0.00 0.00 36.36 4.30
593 903 5.808366 ATGCTATTTACTCGATTCTGGGA 57.192 39.130 0.00 0.00 0.00 4.37
594 904 7.962964 TTTATGCTATTTACTCGATTCTGGG 57.037 36.000 0.00 0.00 0.00 4.45
595 905 9.046296 AGTTTTATGCTATTTACTCGATTCTGG 57.954 33.333 0.00 0.00 0.00 3.86
906 1257 1.675720 GAGAGCAGGGGAGTGAGAGC 61.676 65.000 0.00 0.00 0.00 4.09
907 1258 0.324183 TGAGAGCAGGGGAGTGAGAG 60.324 60.000 0.00 0.00 0.00 3.20
908 1259 0.613292 GTGAGAGCAGGGGAGTGAGA 60.613 60.000 0.00 0.00 0.00 3.27
909 1260 0.614415 AGTGAGAGCAGGGGAGTGAG 60.614 60.000 0.00 0.00 0.00 3.51
1118 1508 0.894642 GGTAGCCTAGGCCTACTCGG 60.895 65.000 30.42 10.43 43.17 4.63
1119 1509 1.235948 CGGTAGCCTAGGCCTACTCG 61.236 65.000 30.42 25.40 43.17 4.18
1120 1510 1.525718 GCGGTAGCCTAGGCCTACTC 61.526 65.000 30.42 20.01 43.17 2.59
1121 1511 1.531128 GCGGTAGCCTAGGCCTACT 60.531 63.158 30.42 14.41 43.17 2.57
1122 1512 3.049470 GCGGTAGCCTAGGCCTAC 58.951 66.667 30.42 26.55 43.17 3.18
1399 1808 0.541296 AGCAAGCTCAAGTTGGCCAT 60.541 50.000 6.09 0.00 0.00 4.40
1505 1914 0.464554 GCCATCTAACCTGGACTGGC 60.465 60.000 0.00 7.30 42.00 4.85
1866 2307 5.244626 CCTTCCAAAGTTCTGTTCATGGAAT 59.755 40.000 5.59 0.00 43.71 3.01
1875 2316 3.181443 CCTGTACCCTTCCAAAGTTCTGT 60.181 47.826 0.00 0.00 0.00 3.41
1969 2410 3.125316 TGCAAAGCTTGTCATTTTCAGC 58.875 40.909 0.00 0.00 0.00 4.26
2062 2503 2.233271 CTCCACTTGTTTCTGGTGCAT 58.767 47.619 0.00 0.00 0.00 3.96
2192 2648 6.312141 TCCTGGTGTTCTTGATGATATCAA 57.688 37.500 9.99 4.39 46.30 2.57
2326 2782 2.883386 GGATGGCCTTGATTTGCTCTAG 59.117 50.000 3.32 0.00 0.00 2.43
2352 2808 6.294675 CCAACATATCAAAGCCACTTCAAGAA 60.295 38.462 0.00 0.00 0.00 2.52
2511 3000 9.376075 CACTTAATAGCATAGGTGATCCATTAG 57.624 37.037 0.00 0.00 35.53 1.73
2689 3193 1.203112 TGAGCCACCAAGCCCAATTAA 60.203 47.619 0.00 0.00 0.00 1.40
2701 3205 2.159028 GGTCAGAGAATAGTGAGCCACC 60.159 54.545 2.18 0.00 35.57 4.61
2707 3211 5.164620 TGCATTTGGTCAGAGAATAGTGA 57.835 39.130 0.00 0.00 0.00 3.41
2750 3254 6.529084 TTATATTGACAGATGGATGGGGTT 57.471 37.500 0.00 0.00 0.00 4.11
2992 3524 3.689649 CACTTATCCAGTACCTTGTTGGC 59.310 47.826 0.00 0.00 33.96 4.52
3009 3541 6.536582 GCTCTAGTTCTTCATCATTGCACTTA 59.463 38.462 0.00 0.00 0.00 2.24
3075 3607 3.117131 CCCTAATCCTTGCCCACCTAATT 60.117 47.826 0.00 0.00 0.00 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.