Multiple sequence alignment - TraesCS7A01G189300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G189300 chr7A 100.000 2864 0 0 1 2864 146676559 146679422 0.000000e+00 5289
1 TraesCS7A01G189300 chr7A 87.435 191 20 4 97 286 706619565 706619752 1.730000e-52 217
2 TraesCS7A01G189300 chr7A 93.814 97 6 0 1 97 4791912 4791816 2.300000e-31 147
3 TraesCS7A01G189300 chr7D 95.499 1333 27 11 1557 2864 145906820 145908144 0.000000e+00 2098
4 TraesCS7A01G189300 chr7D 91.063 1242 63 10 333 1538 145905605 145906834 0.000000e+00 1635
5 TraesCS7A01G189300 chr7B 90.496 947 70 14 1921 2861 107976035 107976967 0.000000e+00 1232
6 TraesCS7A01G189300 chr7B 92.911 790 45 6 748 1536 107974936 107975715 0.000000e+00 1138
7 TraesCS7A01G189300 chr7B 92.898 352 22 1 1557 1908 107975703 107976051 2.550000e-140 508
8 TraesCS7A01G189300 chr7B 85.504 407 20 5 279 656 107974088 107974484 3.460000e-104 388
9 TraesCS7A01G189300 chr7B 86.957 184 21 3 97 279 135993962 135994143 1.350000e-48 204
10 TraesCS7A01G189300 chr2A 87.978 183 20 2 97 279 1649409 1649589 6.210000e-52 215
11 TraesCS7A01G189300 chr2A 89.697 165 16 1 97 261 444007713 444007876 2.890000e-50 209
12 TraesCS7A01G189300 chr2A 92.929 99 6 1 1 98 11644527 11644625 2.970000e-30 143
13 TraesCS7A01G189300 chr6A 87.097 186 21 3 97 281 578543048 578542865 1.040000e-49 207
14 TraesCS7A01G189300 chr6A 87.363 182 20 2 97 276 579055566 579055386 3.740000e-49 206
15 TraesCS7A01G189300 chr6D 87.709 179 18 4 99 276 110421952 110421777 3.740000e-49 206
16 TraesCS7A01G189300 chr5B 87.293 181 20 3 97 276 373627372 373627194 1.350000e-48 204
17 TraesCS7A01G189300 chr5B 93.878 98 6 0 1 98 571534302 571534399 6.390000e-32 148
18 TraesCS7A01G189300 chr5B 92.929 99 6 1 1 98 373627500 373627402 2.970000e-30 143
19 TraesCS7A01G189300 chr1D 85.492 193 26 2 99 291 474420018 474419828 1.740000e-47 200
20 TraesCS7A01G189300 chr2D 94.898 98 5 0 1 98 81592442 81592539 1.370000e-33 154
21 TraesCS7A01G189300 chr3A 94.845 97 5 0 1 97 170736241 170736145 4.940000e-33 152
22 TraesCS7A01G189300 chr4B 94.792 96 5 0 3 98 507251785 507251690 1.780000e-32 150
23 TraesCS7A01G189300 chr4D 93.878 98 6 0 1 98 450004596 450004499 6.390000e-32 148
24 TraesCS7A01G189300 chr5D 93.684 95 6 0 3 97 193596440 193596346 2.970000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G189300 chr7A 146676559 146679422 2863 False 5289.0 5289 100.00000 1 2864 1 chr7A.!!$F1 2863
1 TraesCS7A01G189300 chr7D 145905605 145908144 2539 False 1866.5 2098 93.28100 333 2864 2 chr7D.!!$F1 2531
2 TraesCS7A01G189300 chr7B 107974088 107976967 2879 False 816.5 1232 90.45225 279 2861 4 chr7B.!!$F2 2582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
771 1167 0.322366 TGAATGGAACGATGCAGCCA 60.322 50.0 0.0 0.0 34.45 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2326 2742 0.737219 GATTGTGTCCATGCTCAGCC 59.263 55.0 0.0 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.789026 AGTCATCAGAACATATCAACATGAGA 58.211 34.615 0.00 0.00 0.00 3.27
26 27 8.430431 AGTCATCAGAACATATCAACATGAGAT 58.570 33.333 0.00 5.16 0.00 2.75
27 28 8.710551 GTCATCAGAACATATCAACATGAGATC 58.289 37.037 0.00 0.00 0.00 2.75
28 29 8.648693 TCATCAGAACATATCAACATGAGATCT 58.351 33.333 0.00 0.00 0.00 2.75
29 30 9.924650 CATCAGAACATATCAACATGAGATCTA 57.075 33.333 0.00 0.00 0.00 1.98
31 32 9.140874 TCAGAACATATCAACATGAGATCTAGT 57.859 33.333 0.00 0.00 0.00 2.57
32 33 9.761504 CAGAACATATCAACATGAGATCTAGTT 57.238 33.333 0.00 8.12 0.00 2.24
35 36 8.809159 ACATATCAACATGAGATCTAGTTTCG 57.191 34.615 0.00 0.00 0.00 3.46
36 37 8.633561 ACATATCAACATGAGATCTAGTTTCGA 58.366 33.333 0.00 0.00 0.00 3.71
37 38 9.468532 CATATCAACATGAGATCTAGTTTCGAA 57.531 33.333 0.00 0.00 0.00 3.71
38 39 9.689976 ATATCAACATGAGATCTAGTTTCGAAG 57.310 33.333 0.00 0.00 0.00 3.79
39 40 7.158099 TCAACATGAGATCTAGTTTCGAAGA 57.842 36.000 0.00 0.00 0.00 2.87
40 41 7.776107 TCAACATGAGATCTAGTTTCGAAGAT 58.224 34.615 0.00 0.00 35.04 2.40
41 42 7.918033 TCAACATGAGATCTAGTTTCGAAGATC 59.082 37.037 14.39 14.39 45.61 2.75
65 66 4.966850 GTCGAGACGATTTCTTTTGTGA 57.033 40.909 0.00 0.00 38.42 3.58
66 67 5.324739 GTCGAGACGATTTCTTTTGTGAA 57.675 39.130 0.00 0.00 38.42 3.18
67 68 5.366752 GTCGAGACGATTTCTTTTGTGAAG 58.633 41.667 0.00 0.00 38.42 3.02
68 69 5.175126 GTCGAGACGATTTCTTTTGTGAAGA 59.825 40.000 0.00 0.00 38.42 2.87
69 70 5.175126 TCGAGACGATTTCTTTTGTGAAGAC 59.825 40.000 0.00 0.00 33.22 3.01
70 71 5.330271 AGACGATTTCTTTTGTGAAGACG 57.670 39.130 0.00 0.00 34.90 4.18
71 72 4.211374 AGACGATTTCTTTTGTGAAGACGG 59.789 41.667 0.00 0.00 33.95 4.79
72 73 3.875134 ACGATTTCTTTTGTGAAGACGGT 59.125 39.130 0.00 0.00 33.95 4.83
73 74 4.334481 ACGATTTCTTTTGTGAAGACGGTT 59.666 37.500 0.00 0.00 33.95 4.44
74 75 5.163693 ACGATTTCTTTTGTGAAGACGGTTT 60.164 36.000 0.00 0.00 33.95 3.27
75 76 5.741982 CGATTTCTTTTGTGAAGACGGTTTT 59.258 36.000 0.00 0.00 0.00 2.43
76 77 6.252655 CGATTTCTTTTGTGAAGACGGTTTTT 59.747 34.615 0.00 0.00 0.00 1.94
77 78 6.937886 TTTCTTTTGTGAAGACGGTTTTTC 57.062 33.333 0.00 0.91 0.00 2.29
78 79 5.630661 TCTTTTGTGAAGACGGTTTTTCA 57.369 34.783 5.30 5.30 0.00 2.69
79 80 6.015027 TCTTTTGTGAAGACGGTTTTTCAA 57.985 33.333 9.61 5.25 35.29 2.69
80 81 6.626302 TCTTTTGTGAAGACGGTTTTTCAAT 58.374 32.000 9.61 0.00 35.29 2.57
81 82 6.750039 TCTTTTGTGAAGACGGTTTTTCAATC 59.250 34.615 9.61 2.13 35.29 2.67
82 83 5.568685 TTGTGAAGACGGTTTTTCAATCA 57.431 34.783 9.61 4.11 35.29 2.57
83 84 5.168526 TGTGAAGACGGTTTTTCAATCAG 57.831 39.130 9.61 0.00 35.29 2.90
84 85 4.878971 TGTGAAGACGGTTTTTCAATCAGA 59.121 37.500 9.61 0.00 35.29 3.27
85 86 5.007626 TGTGAAGACGGTTTTTCAATCAGAG 59.992 40.000 9.61 0.00 35.29 3.35
86 87 4.024048 TGAAGACGGTTTTTCAATCAGAGC 60.024 41.667 6.57 0.00 30.84 4.09
87 88 2.480419 AGACGGTTTTTCAATCAGAGCG 59.520 45.455 0.00 0.00 37.27 5.03
88 89 2.478894 GACGGTTTTTCAATCAGAGCGA 59.521 45.455 0.00 0.00 35.46 4.93
89 90 2.223377 ACGGTTTTTCAATCAGAGCGAC 59.777 45.455 0.00 0.00 35.46 5.19
90 91 2.721797 CGGTTTTTCAATCAGAGCGACG 60.722 50.000 0.00 0.00 33.53 5.12
91 92 2.412847 GGTTTTTCAATCAGAGCGACGG 60.413 50.000 0.00 0.00 0.00 4.79
92 93 2.163818 TTTTCAATCAGAGCGACGGT 57.836 45.000 0.00 0.00 0.00 4.83
93 94 2.163818 TTTCAATCAGAGCGACGGTT 57.836 45.000 0.00 0.00 0.00 4.44
94 95 2.163818 TTCAATCAGAGCGACGGTTT 57.836 45.000 0.00 0.00 0.00 3.27
95 96 1.428448 TCAATCAGAGCGACGGTTTG 58.572 50.000 11.01 11.01 0.00 2.93
96 97 1.000394 TCAATCAGAGCGACGGTTTGA 60.000 47.619 20.51 20.51 32.89 2.69
97 98 1.391485 CAATCAGAGCGACGGTTTGAG 59.609 52.381 22.20 8.91 28.42 3.02
98 99 0.888619 ATCAGAGCGACGGTTTGAGA 59.111 50.000 22.20 9.54 28.42 3.27
99 100 0.671796 TCAGAGCGACGGTTTGAGAA 59.328 50.000 15.34 0.00 0.00 2.87
100 101 1.272490 TCAGAGCGACGGTTTGAGAAT 59.728 47.619 15.34 0.00 0.00 2.40
101 102 1.656095 CAGAGCGACGGTTTGAGAATC 59.344 52.381 11.77 0.00 0.00 2.52
102 103 1.546476 AGAGCGACGGTTTGAGAATCT 59.454 47.619 0.00 0.00 34.92 2.40
103 104 2.753452 AGAGCGACGGTTTGAGAATCTA 59.247 45.455 0.00 0.00 34.92 1.98
104 105 2.853003 GAGCGACGGTTTGAGAATCTAC 59.147 50.000 0.00 0.00 34.92 2.59
105 106 2.230508 AGCGACGGTTTGAGAATCTACA 59.769 45.455 0.00 0.00 34.92 2.74
106 107 2.991190 GCGACGGTTTGAGAATCTACAA 59.009 45.455 0.00 0.00 34.92 2.41
107 108 3.617263 GCGACGGTTTGAGAATCTACAAT 59.383 43.478 0.00 0.00 34.92 2.71
108 109 4.492570 GCGACGGTTTGAGAATCTACAATG 60.493 45.833 0.00 0.00 34.92 2.82
109 110 4.032900 CGACGGTTTGAGAATCTACAATGG 59.967 45.833 0.00 0.00 34.92 3.16
110 111 4.906618 ACGGTTTGAGAATCTACAATGGT 58.093 39.130 0.00 0.00 34.92 3.55
111 112 6.045072 ACGGTTTGAGAATCTACAATGGTA 57.955 37.500 0.00 0.00 34.92 3.25
112 113 6.650120 ACGGTTTGAGAATCTACAATGGTAT 58.350 36.000 0.00 0.00 34.92 2.73
113 114 6.761714 ACGGTTTGAGAATCTACAATGGTATC 59.238 38.462 0.00 0.00 34.92 2.24
114 115 6.761242 CGGTTTGAGAATCTACAATGGTATCA 59.239 38.462 0.00 0.00 34.92 2.15
115 116 7.042456 CGGTTTGAGAATCTACAATGGTATCAG 60.042 40.741 0.00 0.00 34.92 2.90
116 117 7.254932 GGTTTGAGAATCTACAATGGTATCAGC 60.255 40.741 0.00 0.00 34.92 4.26
117 118 6.737720 TGAGAATCTACAATGGTATCAGCT 57.262 37.500 0.00 0.00 34.92 4.24
118 119 7.129457 TGAGAATCTACAATGGTATCAGCTT 57.871 36.000 0.00 0.00 34.92 3.74
119 120 7.568349 TGAGAATCTACAATGGTATCAGCTTT 58.432 34.615 0.00 0.00 34.92 3.51
120 121 8.049117 TGAGAATCTACAATGGTATCAGCTTTT 58.951 33.333 0.00 0.00 34.92 2.27
121 122 8.443953 AGAATCTACAATGGTATCAGCTTTTC 57.556 34.615 0.00 0.00 0.00 2.29
122 123 6.851222 ATCTACAATGGTATCAGCTTTTCG 57.149 37.500 0.00 0.00 0.00 3.46
123 124 5.730550 TCTACAATGGTATCAGCTTTTCGT 58.269 37.500 0.00 0.00 0.00 3.85
124 125 4.946784 ACAATGGTATCAGCTTTTCGTC 57.053 40.909 0.00 0.00 0.00 4.20
125 126 4.323417 ACAATGGTATCAGCTTTTCGTCA 58.677 39.130 0.00 0.00 0.00 4.35
126 127 4.943705 ACAATGGTATCAGCTTTTCGTCAT 59.056 37.500 0.00 0.00 0.00 3.06
127 128 5.415701 ACAATGGTATCAGCTTTTCGTCATT 59.584 36.000 0.00 0.00 0.00 2.57
128 129 5.741388 ATGGTATCAGCTTTTCGTCATTC 57.259 39.130 0.00 0.00 0.00 2.67
129 130 4.574892 TGGTATCAGCTTTTCGTCATTCA 58.425 39.130 0.00 0.00 0.00 2.57
130 131 4.631377 TGGTATCAGCTTTTCGTCATTCAG 59.369 41.667 0.00 0.00 0.00 3.02
131 132 4.631813 GGTATCAGCTTTTCGTCATTCAGT 59.368 41.667 0.00 0.00 0.00 3.41
132 133 4.675190 ATCAGCTTTTCGTCATTCAGTG 57.325 40.909 0.00 0.00 0.00 3.66
133 134 2.224079 TCAGCTTTTCGTCATTCAGTGC 59.776 45.455 0.00 0.00 0.00 4.40
134 135 2.031769 CAGCTTTTCGTCATTCAGTGCA 60.032 45.455 0.00 0.00 0.00 4.57
135 136 2.816087 AGCTTTTCGTCATTCAGTGCAT 59.184 40.909 0.00 0.00 0.00 3.96
136 137 4.002982 AGCTTTTCGTCATTCAGTGCATA 58.997 39.130 0.00 0.00 0.00 3.14
137 138 4.637534 AGCTTTTCGTCATTCAGTGCATAT 59.362 37.500 0.00 0.00 0.00 1.78
138 139 5.817296 AGCTTTTCGTCATTCAGTGCATATA 59.183 36.000 0.00 0.00 0.00 0.86
139 140 6.484643 AGCTTTTCGTCATTCAGTGCATATAT 59.515 34.615 0.00 0.00 0.00 0.86
140 141 6.576313 GCTTTTCGTCATTCAGTGCATATATG 59.424 38.462 8.45 8.45 0.00 1.78
163 164 6.973843 TGCATGTAATTAGAATGAGGAATGC 58.026 36.000 10.82 0.00 37.72 3.56
164 165 6.546772 TGCATGTAATTAGAATGAGGAATGCA 59.453 34.615 10.82 0.00 43.00 3.96
165 166 6.860023 GCATGTAATTAGAATGAGGAATGCAC 59.140 38.462 10.82 0.00 37.29 4.57
166 167 6.603237 TGTAATTAGAATGAGGAATGCACG 57.397 37.500 0.00 0.00 0.00 5.34
167 168 6.112734 TGTAATTAGAATGAGGAATGCACGT 58.887 36.000 0.00 0.00 0.00 4.49
168 169 5.490139 AATTAGAATGAGGAATGCACGTG 57.510 39.130 12.28 12.28 0.00 4.49
169 170 2.768253 AGAATGAGGAATGCACGTGA 57.232 45.000 22.23 4.80 0.00 4.35
170 171 3.057969 AGAATGAGGAATGCACGTGAA 57.942 42.857 22.23 10.11 0.00 3.18
171 172 3.411446 AGAATGAGGAATGCACGTGAAA 58.589 40.909 22.23 6.81 0.00 2.69
172 173 3.438087 AGAATGAGGAATGCACGTGAAAG 59.562 43.478 22.23 0.00 0.00 2.62
173 174 2.542020 TGAGGAATGCACGTGAAAGA 57.458 45.000 22.23 0.00 0.00 2.52
174 175 2.844946 TGAGGAATGCACGTGAAAGAA 58.155 42.857 22.23 0.00 0.00 2.52
175 176 3.210227 TGAGGAATGCACGTGAAAGAAA 58.790 40.909 22.23 0.00 0.00 2.52
176 177 3.629855 TGAGGAATGCACGTGAAAGAAAA 59.370 39.130 22.23 0.00 0.00 2.29
177 178 4.097135 TGAGGAATGCACGTGAAAGAAAAA 59.903 37.500 22.23 0.00 0.00 1.94
178 179 5.200368 AGGAATGCACGTGAAAGAAAAAT 57.800 34.783 22.23 0.00 0.00 1.82
179 180 5.600696 AGGAATGCACGTGAAAGAAAAATT 58.399 33.333 22.23 0.00 0.00 1.82
180 181 6.744112 AGGAATGCACGTGAAAGAAAAATTA 58.256 32.000 22.23 0.00 0.00 1.40
181 182 7.206687 AGGAATGCACGTGAAAGAAAAATTAA 58.793 30.769 22.23 0.00 0.00 1.40
182 183 7.872483 AGGAATGCACGTGAAAGAAAAATTAAT 59.128 29.630 22.23 0.00 0.00 1.40
183 184 8.495148 GGAATGCACGTGAAAGAAAAATTAATT 58.505 29.630 22.23 0.00 0.00 1.40
234 235 7.009568 AGAATGAAGTAATGATCGTTCTTGC 57.990 36.000 2.72 0.00 35.62 4.01
235 236 5.741388 ATGAAGTAATGATCGTTCTTGCC 57.259 39.130 2.72 0.00 0.00 4.52
236 237 4.832248 TGAAGTAATGATCGTTCTTGCCT 58.168 39.130 2.72 0.00 0.00 4.75
237 238 5.972935 TGAAGTAATGATCGTTCTTGCCTA 58.027 37.500 2.72 0.00 0.00 3.93
238 239 6.582636 TGAAGTAATGATCGTTCTTGCCTAT 58.417 36.000 2.72 0.00 0.00 2.57
239 240 7.047891 TGAAGTAATGATCGTTCTTGCCTATT 58.952 34.615 2.72 0.00 0.00 1.73
240 241 6.851222 AGTAATGATCGTTCTTGCCTATTG 57.149 37.500 2.72 0.00 0.00 1.90
241 242 4.558538 AATGATCGTTCTTGCCTATTGC 57.441 40.909 0.00 0.00 41.77 3.56
242 243 3.266510 TGATCGTTCTTGCCTATTGCT 57.733 42.857 0.00 0.00 42.00 3.91
243 244 4.400529 TGATCGTTCTTGCCTATTGCTA 57.599 40.909 0.00 0.00 42.00 3.49
244 245 4.765273 TGATCGTTCTTGCCTATTGCTAA 58.235 39.130 0.00 0.00 42.00 3.09
245 246 5.182487 TGATCGTTCTTGCCTATTGCTAAA 58.818 37.500 0.00 0.00 42.00 1.85
246 247 5.645929 TGATCGTTCTTGCCTATTGCTAAAA 59.354 36.000 0.00 0.00 42.00 1.52
247 248 6.318648 TGATCGTTCTTGCCTATTGCTAAAAT 59.681 34.615 0.00 0.00 42.00 1.82
248 249 6.119144 TCGTTCTTGCCTATTGCTAAAATC 57.881 37.500 0.00 0.00 42.00 2.17
249 250 5.065988 TCGTTCTTGCCTATTGCTAAAATCC 59.934 40.000 0.00 0.00 42.00 3.01
250 251 5.273944 GTTCTTGCCTATTGCTAAAATCCG 58.726 41.667 0.00 0.00 42.00 4.18
251 252 4.776349 TCTTGCCTATTGCTAAAATCCGA 58.224 39.130 0.00 0.00 42.00 4.55
252 253 5.189928 TCTTGCCTATTGCTAAAATCCGAA 58.810 37.500 0.00 0.00 42.00 4.30
253 254 4.893424 TGCCTATTGCTAAAATCCGAAC 57.107 40.909 0.00 0.00 42.00 3.95
254 255 3.311322 TGCCTATTGCTAAAATCCGAACG 59.689 43.478 0.00 0.00 42.00 3.95
255 256 3.303791 GCCTATTGCTAAAATCCGAACGG 60.304 47.826 6.94 6.94 36.87 4.44
256 257 3.875134 CCTATTGCTAAAATCCGAACGGT 59.125 43.478 12.93 0.00 36.47 4.83
257 258 4.334481 CCTATTGCTAAAATCCGAACGGTT 59.666 41.667 12.93 0.00 36.47 4.44
258 259 4.776795 ATTGCTAAAATCCGAACGGTTT 57.223 36.364 12.93 8.30 36.47 3.27
259 260 3.546002 TGCTAAAATCCGAACGGTTTG 57.454 42.857 12.93 0.88 36.47 2.93
260 261 2.226912 TGCTAAAATCCGAACGGTTTGG 59.773 45.455 19.34 19.34 36.47 3.28
262 263 3.668757 GCTAAAATCCGAACGGTTTGGAC 60.669 47.826 27.93 13.23 45.83 4.02
263 264 1.970092 AAATCCGAACGGTTTGGACA 58.030 45.000 27.93 10.96 45.83 4.02
264 265 2.194201 AATCCGAACGGTTTGGACAT 57.806 45.000 27.93 18.48 45.83 3.06
265 266 2.194201 ATCCGAACGGTTTGGACATT 57.806 45.000 27.93 12.94 45.83 2.71
266 267 2.835580 TCCGAACGGTTTGGACATTA 57.164 45.000 23.14 3.79 38.32 1.90
267 268 3.337694 TCCGAACGGTTTGGACATTAT 57.662 42.857 23.14 0.00 38.32 1.28
268 269 3.264104 TCCGAACGGTTTGGACATTATC 58.736 45.455 23.14 0.00 38.32 1.75
269 270 3.004171 CCGAACGGTTTGGACATTATCA 58.996 45.455 20.53 0.00 36.18 2.15
270 271 3.181514 CCGAACGGTTTGGACATTATCAC 60.182 47.826 20.53 0.00 36.18 3.06
271 272 3.433957 CGAACGGTTTGGACATTATCACA 59.566 43.478 0.00 0.00 0.00 3.58
272 273 4.435518 CGAACGGTTTGGACATTATCACAG 60.436 45.833 0.00 0.00 0.00 3.66
273 274 4.015872 ACGGTTTGGACATTATCACAGT 57.984 40.909 0.00 0.00 0.00 3.55
274 275 4.000988 ACGGTTTGGACATTATCACAGTC 58.999 43.478 0.00 0.00 0.00 3.51
294 295 7.709182 CACAGTCCAAAGATTATATGTTACGGA 59.291 37.037 0.00 0.00 0.00 4.69
307 308 2.093869 TGTTACGGATAGGCACTTCCAC 60.094 50.000 0.00 0.00 41.75 4.02
330 331 4.309099 CAATGCTGGTAAACAAGTGCAAT 58.691 39.130 0.00 0.00 34.07 3.56
348 349 6.436532 AGTGCAATGGAATCAAGATCTTCTTT 59.563 34.615 4.57 1.93 33.78 2.52
409 410 7.346751 ACAACAGAAAACAGTCCAAACATAT 57.653 32.000 0.00 0.00 0.00 1.78
436 437 3.745975 TCAAGGAATCGTTTGCTAGTGTG 59.254 43.478 0.33 0.00 31.50 3.82
437 438 2.699954 AGGAATCGTTTGCTAGTGTGG 58.300 47.619 0.00 0.00 30.86 4.17
438 439 2.301870 AGGAATCGTTTGCTAGTGTGGA 59.698 45.455 0.00 0.00 30.86 4.02
439 440 3.071479 GGAATCGTTTGCTAGTGTGGAA 58.929 45.455 0.00 0.00 0.00 3.53
440 441 3.120304 GGAATCGTTTGCTAGTGTGGAAC 60.120 47.826 0.00 0.00 37.35 3.62
441 442 2.902705 TCGTTTGCTAGTGTGGAACT 57.097 45.000 0.00 0.00 43.40 3.01
442 443 2.479837 TCGTTTGCTAGTGTGGAACTG 58.520 47.619 0.00 0.00 40.26 3.16
443 444 2.159014 TCGTTTGCTAGTGTGGAACTGT 60.159 45.455 0.00 0.00 40.26 3.55
480 481 4.153835 CCACAAGTCAGAGAAGCAGAAATC 59.846 45.833 0.00 0.00 0.00 2.17
577 607 7.373441 CGAAATAATACAAATCAACTCGCTTCC 59.627 37.037 0.00 0.00 0.00 3.46
621 651 3.356290 TCCTCTTATGAAAAAGCAGGGC 58.644 45.455 0.00 0.00 30.77 5.19
687 717 2.203983 TGAAGCCTCCCCTGCAGA 60.204 61.111 17.39 0.00 0.00 4.26
698 728 1.679139 CCCTGCAGAAACAAGACACA 58.321 50.000 17.39 0.00 0.00 3.72
726 756 1.077501 ACACAAGCCGATCCCCATG 60.078 57.895 0.00 0.00 0.00 3.66
732 762 0.680921 AGCCGATCCCCATGTTGTTG 60.681 55.000 0.00 0.00 0.00 3.33
771 1167 0.322366 TGAATGGAACGATGCAGCCA 60.322 50.000 0.00 0.00 34.45 4.75
790 1187 2.036992 CCAGTCTCCATGGAGCTATGTC 59.963 54.545 33.39 18.64 40.51 3.06
807 1204 3.449227 CGAGCAGGTACCAGCCGA 61.449 66.667 24.31 0.00 0.00 5.54
878 1276 5.375417 TGCTGTAACATCAAATTGACCTG 57.625 39.130 0.00 0.00 0.00 4.00
976 1374 6.789262 ACAGTTTTGAGTCTTTGATCAGTTG 58.211 36.000 0.00 0.00 0.00 3.16
1071 1469 3.600388 GGTCAGTAAAGGAGTGTCCATG 58.400 50.000 0.00 0.00 39.61 3.66
1105 1503 2.321060 GCGTCATTGCGGTCATCG 59.679 61.111 3.39 0.00 42.76 3.84
1113 1511 4.778143 GCGGTCATCGGCACCCTT 62.778 66.667 0.00 0.00 39.26 3.95
1182 1580 0.871722 CGCCGTTCATCCAGTTCAAA 59.128 50.000 0.00 0.00 0.00 2.69
1185 1583 1.135972 CCGTTCATCCAGTTCAAAGCG 60.136 52.381 0.00 0.00 0.00 4.68
1302 1701 7.814107 TGATGCTCCAACTGTTTGAATTTTATC 59.186 33.333 0.00 0.00 34.24 1.75
1382 1781 0.396435 TCGCTCCCACTGTCAATTGT 59.604 50.000 5.13 0.00 0.00 2.71
1499 1898 6.021596 CAGTGCTGAACCGTTCAATTAATAC 58.978 40.000 14.74 7.84 39.58 1.89
1538 1937 7.801716 TGAAACTATGCATGATTACTAACCC 57.198 36.000 10.16 0.00 0.00 4.11
1539 1938 7.573710 TGAAACTATGCATGATTACTAACCCT 58.426 34.615 10.16 0.00 0.00 4.34
1540 1939 7.715249 TGAAACTATGCATGATTACTAACCCTC 59.285 37.037 10.16 0.00 0.00 4.30
1541 1940 5.784177 ACTATGCATGATTACTAACCCTCG 58.216 41.667 10.16 0.00 0.00 4.63
1542 1941 4.689612 ATGCATGATTACTAACCCTCGT 57.310 40.909 0.00 0.00 0.00 4.18
1544 1943 4.839121 TGCATGATTACTAACCCTCGTTT 58.161 39.130 0.00 0.00 33.17 3.60
1545 1944 4.873827 TGCATGATTACTAACCCTCGTTTC 59.126 41.667 0.00 0.00 33.17 2.78
1546 1945 4.873827 GCATGATTACTAACCCTCGTTTCA 59.126 41.667 0.00 0.00 33.17 2.69
1547 1946 5.353123 GCATGATTACTAACCCTCGTTTCAA 59.647 40.000 0.00 0.00 33.17 2.69
1548 1947 6.128117 GCATGATTACTAACCCTCGTTTCAAA 60.128 38.462 0.00 0.00 33.17 2.69
1549 1948 7.574217 GCATGATTACTAACCCTCGTTTCAAAA 60.574 37.037 0.00 0.00 33.17 2.44
1550 1949 7.804843 TGATTACTAACCCTCGTTTCAAAAA 57.195 32.000 0.00 0.00 33.17 1.94
1842 2244 3.364549 ACTGCTCATCTTACTCTCAGCT 58.635 45.455 0.00 0.00 0.00 4.24
1915 2317 6.747414 AGTATAAGTGTGATATCCCAGCAA 57.253 37.500 0.00 0.00 0.00 3.91
2025 2439 1.569493 CCTTGACGGTGTTGCTTCG 59.431 57.895 0.00 0.00 0.00 3.79
2180 2596 1.270571 GGAAGCTCCATACCTGCTAGC 60.271 57.143 8.10 8.10 36.28 3.42
2246 2662 8.347004 TGGCTGTTTTGAATATGATTTACTCA 57.653 30.769 0.00 0.00 38.53 3.41
2326 2742 2.016318 TGGCCGAGCATAAAATGACAG 58.984 47.619 0.00 0.00 0.00 3.51
2740 3166 3.803778 GCAACTGTAGTGCTTTGCATTTT 59.196 39.130 11.40 0.00 43.16 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.789026 TCTCATGTTGATATGTTCTGATGACT 58.211 34.615 0.00 0.00 0.00 3.41
1 2 8.604640 ATCTCATGTTGATATGTTCTGATGAC 57.395 34.615 0.00 0.00 0.00 3.06
2 3 8.648693 AGATCTCATGTTGATATGTTCTGATGA 58.351 33.333 0.00 0.00 0.00 2.92
3 4 8.834749 AGATCTCATGTTGATATGTTCTGATG 57.165 34.615 0.00 0.00 0.00 3.07
5 6 9.140874 ACTAGATCTCATGTTGATATGTTCTGA 57.859 33.333 0.00 0.00 0.00 3.27
6 7 9.761504 AACTAGATCTCATGTTGATATGTTCTG 57.238 33.333 0.00 0.00 0.00 3.02
9 10 9.254133 CGAAACTAGATCTCATGTTGATATGTT 57.746 33.333 0.00 8.42 0.00 2.71
10 11 8.633561 TCGAAACTAGATCTCATGTTGATATGT 58.366 33.333 0.00 4.46 0.00 2.29
11 12 9.468532 TTCGAAACTAGATCTCATGTTGATATG 57.531 33.333 0.00 0.00 0.00 1.78
12 13 9.689976 CTTCGAAACTAGATCTCATGTTGATAT 57.310 33.333 0.00 0.00 0.00 1.63
13 14 8.903820 TCTTCGAAACTAGATCTCATGTTGATA 58.096 33.333 0.00 0.00 0.00 2.15
14 15 7.776107 TCTTCGAAACTAGATCTCATGTTGAT 58.224 34.615 0.00 0.00 0.00 2.57
15 16 7.158099 TCTTCGAAACTAGATCTCATGTTGA 57.842 36.000 0.00 0.00 0.00 3.18
16 17 8.060020 GATCTTCGAAACTAGATCTCATGTTG 57.940 38.462 14.79 0.00 42.17 3.33
44 45 4.966850 TCACAAAAGAAATCGTCTCGAC 57.033 40.909 0.00 0.00 39.18 4.20
45 46 5.175126 GTCTTCACAAAAGAAATCGTCTCGA 59.825 40.000 0.00 0.00 41.13 4.04
46 47 5.366752 GTCTTCACAAAAGAAATCGTCTCG 58.633 41.667 0.00 0.00 34.56 4.04
47 48 5.366752 CGTCTTCACAAAAGAAATCGTCTC 58.633 41.667 0.00 0.00 34.56 3.36
48 49 4.211374 CCGTCTTCACAAAAGAAATCGTCT 59.789 41.667 0.00 0.00 38.69 4.18
49 50 4.025145 ACCGTCTTCACAAAAGAAATCGTC 60.025 41.667 0.00 0.00 0.00 4.20
50 51 3.875134 ACCGTCTTCACAAAAGAAATCGT 59.125 39.130 0.00 0.00 0.00 3.73
51 52 4.468095 ACCGTCTTCACAAAAGAAATCG 57.532 40.909 0.00 0.00 0.00 3.34
52 53 7.274686 TGAAAAACCGTCTTCACAAAAGAAATC 59.725 33.333 0.00 0.00 0.00 2.17
53 54 7.093992 TGAAAAACCGTCTTCACAAAAGAAAT 58.906 30.769 0.00 0.00 0.00 2.17
54 55 6.448006 TGAAAAACCGTCTTCACAAAAGAAA 58.552 32.000 0.00 0.00 0.00 2.52
55 56 6.015027 TGAAAAACCGTCTTCACAAAAGAA 57.985 33.333 0.00 0.00 0.00 2.52
56 57 5.630661 TGAAAAACCGTCTTCACAAAAGA 57.369 34.783 0.00 0.00 0.00 2.52
57 58 6.529829 TGATTGAAAAACCGTCTTCACAAAAG 59.470 34.615 0.00 0.00 31.41 2.27
58 59 6.390721 TGATTGAAAAACCGTCTTCACAAAA 58.609 32.000 0.00 0.00 31.41 2.44
59 60 5.955488 TGATTGAAAAACCGTCTTCACAAA 58.045 33.333 0.00 0.00 31.41 2.83
60 61 5.355630 TCTGATTGAAAAACCGTCTTCACAA 59.644 36.000 0.00 0.00 31.41 3.33
61 62 4.878971 TCTGATTGAAAAACCGTCTTCACA 59.121 37.500 0.00 0.00 31.41 3.58
62 63 5.418310 TCTGATTGAAAAACCGTCTTCAC 57.582 39.130 0.00 0.00 31.41 3.18
63 64 4.024048 GCTCTGATTGAAAAACCGTCTTCA 60.024 41.667 0.00 0.00 0.00 3.02
64 65 4.467735 GCTCTGATTGAAAAACCGTCTTC 58.532 43.478 0.00 0.00 0.00 2.87
65 66 3.058914 CGCTCTGATTGAAAAACCGTCTT 60.059 43.478 0.00 0.00 0.00 3.01
66 67 2.480419 CGCTCTGATTGAAAAACCGTCT 59.520 45.455 0.00 0.00 0.00 4.18
67 68 2.478894 TCGCTCTGATTGAAAAACCGTC 59.521 45.455 0.00 0.00 0.00 4.79
68 69 2.223377 GTCGCTCTGATTGAAAAACCGT 59.777 45.455 0.00 0.00 0.00 4.83
69 70 2.721797 CGTCGCTCTGATTGAAAAACCG 60.722 50.000 0.00 0.00 0.00 4.44
70 71 2.412847 CCGTCGCTCTGATTGAAAAACC 60.413 50.000 0.00 0.00 0.00 3.27
71 72 2.223377 ACCGTCGCTCTGATTGAAAAAC 59.777 45.455 0.00 0.00 0.00 2.43
72 73 2.489971 ACCGTCGCTCTGATTGAAAAA 58.510 42.857 0.00 0.00 0.00 1.94
73 74 2.163818 ACCGTCGCTCTGATTGAAAA 57.836 45.000 0.00 0.00 0.00 2.29
74 75 2.163818 AACCGTCGCTCTGATTGAAA 57.836 45.000 0.00 0.00 0.00 2.69
75 76 1.798223 CAAACCGTCGCTCTGATTGAA 59.202 47.619 0.00 0.00 0.00 2.69
76 77 1.000394 TCAAACCGTCGCTCTGATTGA 60.000 47.619 0.00 0.00 0.00 2.57
77 78 1.391485 CTCAAACCGTCGCTCTGATTG 59.609 52.381 0.00 0.00 0.00 2.67
78 79 1.272490 TCTCAAACCGTCGCTCTGATT 59.728 47.619 0.00 0.00 0.00 2.57
79 80 0.888619 TCTCAAACCGTCGCTCTGAT 59.111 50.000 0.00 0.00 0.00 2.90
80 81 0.671796 TTCTCAAACCGTCGCTCTGA 59.328 50.000 0.00 0.00 0.00 3.27
81 82 1.656095 GATTCTCAAACCGTCGCTCTG 59.344 52.381 0.00 0.00 0.00 3.35
82 83 1.546476 AGATTCTCAAACCGTCGCTCT 59.454 47.619 0.00 0.00 0.00 4.09
83 84 1.997669 AGATTCTCAAACCGTCGCTC 58.002 50.000 0.00 0.00 0.00 5.03
84 85 2.230508 TGTAGATTCTCAAACCGTCGCT 59.769 45.455 0.00 0.00 0.00 4.93
85 86 2.602878 TGTAGATTCTCAAACCGTCGC 58.397 47.619 0.00 0.00 0.00 5.19
86 87 4.032900 CCATTGTAGATTCTCAAACCGTCG 59.967 45.833 0.00 0.00 0.00 5.12
87 88 4.935808 ACCATTGTAGATTCTCAAACCGTC 59.064 41.667 0.00 0.00 0.00 4.79
88 89 4.906618 ACCATTGTAGATTCTCAAACCGT 58.093 39.130 0.00 0.00 0.00 4.83
89 90 6.761242 TGATACCATTGTAGATTCTCAAACCG 59.239 38.462 0.00 0.00 0.00 4.44
90 91 7.254932 GCTGATACCATTGTAGATTCTCAAACC 60.255 40.741 0.00 0.00 0.00 3.27
91 92 7.497249 AGCTGATACCATTGTAGATTCTCAAAC 59.503 37.037 0.00 0.00 0.00 2.93
92 93 7.568349 AGCTGATACCATTGTAGATTCTCAAA 58.432 34.615 0.00 0.00 0.00 2.69
93 94 7.129457 AGCTGATACCATTGTAGATTCTCAA 57.871 36.000 0.00 0.00 0.00 3.02
94 95 6.737720 AGCTGATACCATTGTAGATTCTCA 57.262 37.500 0.00 0.00 0.00 3.27
95 96 8.443953 AAAAGCTGATACCATTGTAGATTCTC 57.556 34.615 0.00 0.00 0.00 2.87
96 97 7.225538 CGAAAAGCTGATACCATTGTAGATTCT 59.774 37.037 0.00 0.00 0.00 2.40
97 98 7.011482 ACGAAAAGCTGATACCATTGTAGATTC 59.989 37.037 0.00 0.00 0.00 2.52
98 99 6.823689 ACGAAAAGCTGATACCATTGTAGATT 59.176 34.615 0.00 0.00 0.00 2.40
99 100 6.349300 ACGAAAAGCTGATACCATTGTAGAT 58.651 36.000 0.00 0.00 0.00 1.98
100 101 5.730550 ACGAAAAGCTGATACCATTGTAGA 58.269 37.500 0.00 0.00 0.00 2.59
101 102 5.580691 TGACGAAAAGCTGATACCATTGTAG 59.419 40.000 0.00 0.00 0.00 2.74
102 103 5.483811 TGACGAAAAGCTGATACCATTGTA 58.516 37.500 0.00 0.00 0.00 2.41
103 104 4.323417 TGACGAAAAGCTGATACCATTGT 58.677 39.130 0.00 0.00 0.00 2.71
104 105 4.944962 TGACGAAAAGCTGATACCATTG 57.055 40.909 0.00 0.00 0.00 2.82
105 106 5.647658 TGAATGACGAAAAGCTGATACCATT 59.352 36.000 0.00 0.00 0.00 3.16
106 107 5.185454 TGAATGACGAAAAGCTGATACCAT 58.815 37.500 0.00 0.00 0.00 3.55
107 108 4.574892 TGAATGACGAAAAGCTGATACCA 58.425 39.130 0.00 0.00 0.00 3.25
108 109 4.631813 ACTGAATGACGAAAAGCTGATACC 59.368 41.667 0.00 0.00 0.00 2.73
109 110 5.554636 CACTGAATGACGAAAAGCTGATAC 58.445 41.667 0.00 0.00 0.00 2.24
110 111 4.093408 GCACTGAATGACGAAAAGCTGATA 59.907 41.667 0.00 0.00 0.00 2.15
111 112 3.120060 GCACTGAATGACGAAAAGCTGAT 60.120 43.478 0.00 0.00 0.00 2.90
112 113 2.224079 GCACTGAATGACGAAAAGCTGA 59.776 45.455 0.00 0.00 0.00 4.26
113 114 2.031769 TGCACTGAATGACGAAAAGCTG 60.032 45.455 0.00 0.00 0.00 4.24
114 115 2.221169 TGCACTGAATGACGAAAAGCT 58.779 42.857 0.00 0.00 0.00 3.74
115 116 2.686558 TGCACTGAATGACGAAAAGC 57.313 45.000 0.00 0.00 0.00 3.51
137 138 8.733458 GCATTCCTCATTCTAATTACATGCATA 58.267 33.333 0.00 0.00 34.68 3.14
138 139 7.231925 TGCATTCCTCATTCTAATTACATGCAT 59.768 33.333 0.00 0.00 38.62 3.96
139 140 6.546772 TGCATTCCTCATTCTAATTACATGCA 59.453 34.615 0.00 0.00 40.63 3.96
140 141 6.860023 GTGCATTCCTCATTCTAATTACATGC 59.140 38.462 0.00 0.00 35.04 4.06
141 142 7.073883 CGTGCATTCCTCATTCTAATTACATG 58.926 38.462 0.00 0.00 0.00 3.21
142 143 6.767902 ACGTGCATTCCTCATTCTAATTACAT 59.232 34.615 0.00 0.00 0.00 2.29
143 144 6.037062 CACGTGCATTCCTCATTCTAATTACA 59.963 38.462 0.82 0.00 0.00 2.41
144 145 6.257849 TCACGTGCATTCCTCATTCTAATTAC 59.742 38.462 11.67 0.00 0.00 1.89
145 146 6.345298 TCACGTGCATTCCTCATTCTAATTA 58.655 36.000 11.67 0.00 0.00 1.40
146 147 5.185454 TCACGTGCATTCCTCATTCTAATT 58.815 37.500 11.67 0.00 0.00 1.40
147 148 4.769688 TCACGTGCATTCCTCATTCTAAT 58.230 39.130 11.67 0.00 0.00 1.73
148 149 4.200838 TCACGTGCATTCCTCATTCTAA 57.799 40.909 11.67 0.00 0.00 2.10
149 150 3.885724 TCACGTGCATTCCTCATTCTA 57.114 42.857 11.67 0.00 0.00 2.10
150 151 2.768253 TCACGTGCATTCCTCATTCT 57.232 45.000 11.67 0.00 0.00 2.40
151 152 3.436704 TCTTTCACGTGCATTCCTCATTC 59.563 43.478 11.67 0.00 0.00 2.67
152 153 3.411446 TCTTTCACGTGCATTCCTCATT 58.589 40.909 11.67 0.00 0.00 2.57
153 154 3.057969 TCTTTCACGTGCATTCCTCAT 57.942 42.857 11.67 0.00 0.00 2.90
154 155 2.542020 TCTTTCACGTGCATTCCTCA 57.458 45.000 11.67 0.00 0.00 3.86
155 156 3.896648 TTTCTTTCACGTGCATTCCTC 57.103 42.857 11.67 0.00 0.00 3.71
156 157 4.647424 TTTTTCTTTCACGTGCATTCCT 57.353 36.364 11.67 0.00 0.00 3.36
157 158 5.905480 AATTTTTCTTTCACGTGCATTCC 57.095 34.783 11.67 0.00 0.00 3.01
208 209 8.604035 GCAAGAACGATCATTACTTCATTCTAA 58.396 33.333 0.00 0.00 0.00 2.10
209 210 7.224753 GGCAAGAACGATCATTACTTCATTCTA 59.775 37.037 0.00 0.00 0.00 2.10
210 211 6.037610 GGCAAGAACGATCATTACTTCATTCT 59.962 38.462 0.00 0.00 0.00 2.40
211 212 6.037610 AGGCAAGAACGATCATTACTTCATTC 59.962 38.462 0.00 0.00 0.00 2.67
212 213 5.882557 AGGCAAGAACGATCATTACTTCATT 59.117 36.000 0.00 0.00 0.00 2.57
213 214 5.431765 AGGCAAGAACGATCATTACTTCAT 58.568 37.500 0.00 0.00 0.00 2.57
214 215 4.832248 AGGCAAGAACGATCATTACTTCA 58.168 39.130 0.00 0.00 0.00 3.02
215 216 7.348201 CAATAGGCAAGAACGATCATTACTTC 58.652 38.462 0.00 0.00 0.00 3.01
216 217 6.238484 GCAATAGGCAAGAACGATCATTACTT 60.238 38.462 0.00 0.00 43.97 2.24
217 218 5.237344 GCAATAGGCAAGAACGATCATTACT 59.763 40.000 0.00 0.00 43.97 2.24
218 219 5.444122 GCAATAGGCAAGAACGATCATTAC 58.556 41.667 0.00 0.00 43.97 1.89
219 220 5.673337 GCAATAGGCAAGAACGATCATTA 57.327 39.130 0.00 0.00 43.97 1.90
220 221 4.558538 GCAATAGGCAAGAACGATCATT 57.441 40.909 0.00 0.00 43.97 2.57
233 234 3.303791 CCGTTCGGATTTTAGCAATAGGC 60.304 47.826 5.19 0.00 45.30 3.93
234 235 3.875134 ACCGTTCGGATTTTAGCAATAGG 59.125 43.478 18.28 0.00 0.00 2.57
235 236 5.479716 AACCGTTCGGATTTTAGCAATAG 57.520 39.130 18.28 0.00 0.00 1.73
236 237 5.392165 CCAAACCGTTCGGATTTTAGCAATA 60.392 40.000 18.28 0.00 0.00 1.90
237 238 4.481463 CAAACCGTTCGGATTTTAGCAAT 58.519 39.130 18.28 0.00 0.00 3.56
238 239 3.304794 CCAAACCGTTCGGATTTTAGCAA 60.305 43.478 18.28 0.00 0.00 3.91
239 240 2.226912 CCAAACCGTTCGGATTTTAGCA 59.773 45.455 18.28 0.00 0.00 3.49
240 241 2.485038 TCCAAACCGTTCGGATTTTAGC 59.515 45.455 18.28 0.00 0.00 3.09
241 242 3.499157 TGTCCAAACCGTTCGGATTTTAG 59.501 43.478 18.28 2.84 0.00 1.85
242 243 3.474600 TGTCCAAACCGTTCGGATTTTA 58.525 40.909 18.28 0.33 0.00 1.52
243 244 2.299521 TGTCCAAACCGTTCGGATTTT 58.700 42.857 18.28 6.17 0.00 1.82
244 245 1.970092 TGTCCAAACCGTTCGGATTT 58.030 45.000 18.28 11.10 0.00 2.17
245 246 2.194201 ATGTCCAAACCGTTCGGATT 57.806 45.000 18.28 9.55 0.00 3.01
246 247 2.194201 AATGTCCAAACCGTTCGGAT 57.806 45.000 18.28 2.91 0.00 4.18
247 248 2.835580 TAATGTCCAAACCGTTCGGA 57.164 45.000 18.28 0.00 0.00 4.55
248 249 3.004171 TGATAATGTCCAAACCGTTCGG 58.996 45.455 9.81 9.81 0.00 4.30
249 250 3.433957 TGTGATAATGTCCAAACCGTTCG 59.566 43.478 0.00 0.00 0.00 3.95
250 251 4.454504 ACTGTGATAATGTCCAAACCGTTC 59.545 41.667 0.00 0.00 0.00 3.95
251 252 4.394729 ACTGTGATAATGTCCAAACCGTT 58.605 39.130 0.00 0.00 0.00 4.44
252 253 4.000988 GACTGTGATAATGTCCAAACCGT 58.999 43.478 0.00 0.00 0.00 4.83
253 254 3.374058 GGACTGTGATAATGTCCAAACCG 59.626 47.826 6.52 0.00 46.79 4.44
254 255 4.965119 GGACTGTGATAATGTCCAAACC 57.035 45.455 6.52 0.00 46.79 3.27
266 267 9.261180 CGTAACATATAATCTTTGGACTGTGAT 57.739 33.333 0.00 0.00 0.00 3.06
267 268 7.709182 CCGTAACATATAATCTTTGGACTGTGA 59.291 37.037 0.00 0.00 0.00 3.58
268 269 7.709182 TCCGTAACATATAATCTTTGGACTGTG 59.291 37.037 0.00 0.00 0.00 3.66
269 270 7.788026 TCCGTAACATATAATCTTTGGACTGT 58.212 34.615 0.00 0.00 0.00 3.55
270 271 8.833231 ATCCGTAACATATAATCTTTGGACTG 57.167 34.615 0.00 0.00 0.00 3.51
272 273 9.367444 CCTATCCGTAACATATAATCTTTGGAC 57.633 37.037 0.00 0.00 0.00 4.02
273 274 8.038944 GCCTATCCGTAACATATAATCTTTGGA 58.961 37.037 0.00 0.00 0.00 3.53
274 275 7.822334 TGCCTATCCGTAACATATAATCTTTGG 59.178 37.037 0.00 0.00 0.00 3.28
275 276 8.656849 GTGCCTATCCGTAACATATAATCTTTG 58.343 37.037 0.00 0.00 0.00 2.77
276 277 8.594550 AGTGCCTATCCGTAACATATAATCTTT 58.405 33.333 0.00 0.00 0.00 2.52
277 278 8.135382 AGTGCCTATCCGTAACATATAATCTT 57.865 34.615 0.00 0.00 0.00 2.40
291 292 0.251916 TTGGTGGAAGTGCCTATCCG 59.748 55.000 0.00 0.00 38.63 4.18
294 295 1.285962 AGCATTGGTGGAAGTGCCTAT 59.714 47.619 0.00 0.00 38.31 2.57
317 318 6.647334 TCTTGATTCCATTGCACTTGTTTA 57.353 33.333 0.00 0.00 0.00 2.01
330 331 4.927049 AGGCAAAGAAGATCTTGATTCCA 58.073 39.130 14.00 0.00 36.71 3.53
409 410 3.420893 AGCAAACGATTCCTTGAATCCA 58.579 40.909 10.37 0.00 43.70 3.41
436 437 2.859165 TGAAGTCCATCCACAGTTCC 57.141 50.000 0.00 0.00 0.00 3.62
480 481 0.720027 CTGAGTTGACTCGCTGCATG 59.280 55.000 0.00 0.00 45.72 4.06
556 583 5.712217 CGGAAGCGAGTTGATTTGTATTA 57.288 39.130 0.00 0.00 0.00 0.98
594 624 4.202673 TGCTTTTTCATAAGAGGAAGGGGT 60.203 41.667 0.00 0.00 0.00 4.95
658 688 1.301716 GGCTTCAGCTGGACGTTCA 60.302 57.895 15.13 0.00 41.70 3.18
687 717 3.375299 GTCACTTGCTCTGTGTCTTGTTT 59.625 43.478 0.00 0.00 36.83 2.83
698 728 0.882042 CGGCTTGTGTCACTTGCTCT 60.882 55.000 16.23 0.00 0.00 4.09
726 756 1.832167 TTGCTGGGCCTCCAACAAC 60.832 57.895 4.53 0.00 42.33 3.32
732 762 1.973812 GTTCTGTTGCTGGGCCTCC 60.974 63.158 4.53 0.00 0.00 4.30
771 1167 1.959985 CGACATAGCTCCATGGAGACT 59.040 52.381 40.29 33.98 44.53 3.24
790 1187 2.501223 TTTCGGCTGGTACCTGCTCG 62.501 60.000 34.20 32.18 40.14 5.03
807 1204 3.064324 GTGCTCCCAGGCGCATTT 61.064 61.111 10.83 0.00 41.71 2.32
878 1276 2.512515 GCGGACTGCCTGTGGATC 60.513 66.667 0.00 0.00 37.76 3.36
902 1300 7.875041 CCATGCTCCCTGCTTATATATATACAC 59.125 40.741 1.73 0.00 43.37 2.90
976 1374 6.743575 TCTGGTATTTTTCTTAAGCTGCTC 57.256 37.500 1.00 0.00 0.00 4.26
1071 1469 0.872021 CGCGAAGTATGAGGTCCAGC 60.872 60.000 0.00 0.00 0.00 4.85
1185 1583 1.442857 CGGGAGATCGCTGTATCGC 60.443 63.158 0.00 0.00 0.00 4.58
1302 1701 3.246226 CGAAGAACCTGTCAAGTGTCAAG 59.754 47.826 0.00 0.00 0.00 3.02
1382 1781 1.202758 CCCCGCTCCTAATTATGTGCA 60.203 52.381 13.01 0.00 0.00 4.57
1567 1966 9.825109 GCTTCTCTTTCTTCAGTATAATAGGTT 57.175 33.333 0.00 0.00 0.00 3.50
1568 1967 8.982723 TGCTTCTCTTTCTTCAGTATAATAGGT 58.017 33.333 0.00 0.00 0.00 3.08
1569 1968 9.995003 ATGCTTCTCTTTCTTCAGTATAATAGG 57.005 33.333 0.00 0.00 0.00 2.57
1571 1970 9.265901 GCATGCTTCTCTTTCTTCAGTATAATA 57.734 33.333 11.37 0.00 0.00 0.98
1572 1971 7.772292 TGCATGCTTCTCTTTCTTCAGTATAAT 59.228 33.333 20.33 0.00 0.00 1.28
1573 1972 7.065085 GTGCATGCTTCTCTTTCTTCAGTATAA 59.935 37.037 20.33 0.00 0.00 0.98
1926 2328 4.263905 ACAAGAACCACCCATATCACACAT 60.264 41.667 0.00 0.00 0.00 3.21
1931 2333 5.496556 CAAGTACAAGAACCACCCATATCA 58.503 41.667 0.00 0.00 0.00 2.15
1932 2334 4.335594 GCAAGTACAAGAACCACCCATATC 59.664 45.833 0.00 0.00 0.00 1.63
1933 2335 4.018415 AGCAAGTACAAGAACCACCCATAT 60.018 41.667 0.00 0.00 0.00 1.78
1934 2336 3.329520 AGCAAGTACAAGAACCACCCATA 59.670 43.478 0.00 0.00 0.00 2.74
1935 2337 2.108250 AGCAAGTACAAGAACCACCCAT 59.892 45.455 0.00 0.00 0.00 4.00
1936 2338 1.493022 AGCAAGTACAAGAACCACCCA 59.507 47.619 0.00 0.00 0.00 4.51
2020 2434 1.084289 AAGGCCGATACAAACGAAGC 58.916 50.000 0.00 0.00 0.00 3.86
2025 2439 4.694037 AGAAGTACAAAGGCCGATACAAAC 59.306 41.667 0.00 0.00 0.00 2.93
2246 2662 1.490574 CACTAGCAAGGAGGCCTAGT 58.509 55.000 4.42 0.00 31.13 2.57
2308 2724 1.268743 GCCTGTCATTTTATGCTCGGC 60.269 52.381 0.00 0.00 0.00 5.54
2326 2742 0.737219 GATTGTGTCCATGCTCAGCC 59.263 55.000 0.00 0.00 0.00 4.85
2740 3166 2.447443 AGACAGGTACAAGATCGAGCA 58.553 47.619 2.38 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.