Multiple sequence alignment - TraesCS7A01G188800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G188800 chr7A 100.000 3671 0 0 1 3671 145035088 145031418 0.000000e+00 6780
1 TraesCS7A01G188800 chr7D 93.071 3204 184 15 263 3462 142700994 142697825 0.000000e+00 4652
2 TraesCS7A01G188800 chr1B 89.469 2146 188 24 845 2962 492097667 492099802 0.000000e+00 2676
3 TraesCS7A01G188800 chr1D 89.039 2144 186 27 845 2962 367724913 367727033 0.000000e+00 2612
4 TraesCS7A01G188800 chr7B 92.560 1492 90 12 1649 3135 107337184 107335709 0.000000e+00 2121
5 TraesCS7A01G188800 chr7B 94.444 774 40 3 875 1646 107338001 107337229 0.000000e+00 1188
6 TraesCS7A01G188800 chr7B 91.806 537 37 5 3136 3671 107282808 107282278 0.000000e+00 741
7 TraesCS7A01G188800 chr7B 89.123 285 31 0 6 290 107348909 107348625 4.510000e-94 355
8 TraesCS7A01G188800 chr2D 75.500 1000 187 40 1973 2948 636017681 636018646 1.570000e-118 436
9 TraesCS7A01G188800 chr2D 75.445 281 49 16 2973 3246 636030802 636031069 6.440000e-23 119
10 TraesCS7A01G188800 chr2B 75.000 1004 193 40 1973 2951 794081935 794082905 9.490000e-111 411
11 TraesCS7A01G188800 chr2A 74.777 1011 197 37 1976 2963 761211149 761210174 5.710000e-108 401


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G188800 chr7A 145031418 145035088 3670 True 6780.0 6780 100.000 1 3671 1 chr7A.!!$R1 3670
1 TraesCS7A01G188800 chr7D 142697825 142700994 3169 True 4652.0 4652 93.071 263 3462 1 chr7D.!!$R1 3199
2 TraesCS7A01G188800 chr1B 492097667 492099802 2135 False 2676.0 2676 89.469 845 2962 1 chr1B.!!$F1 2117
3 TraesCS7A01G188800 chr1D 367724913 367727033 2120 False 2612.0 2612 89.039 845 2962 1 chr1D.!!$F1 2117
4 TraesCS7A01G188800 chr7B 107335709 107338001 2292 True 1654.5 2121 93.502 875 3135 2 chr7B.!!$R3 2260
5 TraesCS7A01G188800 chr7B 107282278 107282808 530 True 741.0 741 91.806 3136 3671 1 chr7B.!!$R1 535
6 TraesCS7A01G188800 chr2D 636017681 636018646 965 False 436.0 436 75.500 1973 2948 1 chr2D.!!$F1 975
7 TraesCS7A01G188800 chr2B 794081935 794082905 970 False 411.0 411 75.000 1973 2951 1 chr2B.!!$F1 978
8 TraesCS7A01G188800 chr2A 761210174 761211149 975 True 401.0 401 74.777 1976 2963 1 chr2A.!!$R1 987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.105039 GATAAGAGGCCACGACCCTG 59.895 60.0 5.01 0.0 31.41 4.45 F
110 111 0.106167 CGACCCTGGGTAGAGGATGA 60.106 60.0 20.61 0.0 35.25 2.92 F
177 178 0.109132 GCGGTGGAAGGCAAAAGATG 60.109 55.0 0.00 0.0 0.00 2.90 F
381 382 0.111061 TGGAGTTGAGCCACTGCAAT 59.889 50.0 0.64 0.0 41.69 3.56 F
1505 1530 0.323629 TTGGACCGACAGGGAACATC 59.676 55.0 0.00 0.0 43.47 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1396 0.393537 GCCTTCCTCCATGACTGGTG 60.394 60.000 0.0 0.0 43.61 4.17 R
1399 1424 0.762418 TGTTCCCCACTGACATCGTT 59.238 50.000 0.0 0.0 0.00 3.85 R
1475 1500 2.635915 TGTCGGTCCAATACTTTCTGGT 59.364 45.455 0.0 0.0 34.11 4.00 R
2223 2299 2.039418 CCATAGACACCCAATCCTCGA 58.961 52.381 0.0 0.0 0.00 4.04 R
3103 3200 0.106469 CCACCTCATCCTCCTCTCGA 60.106 60.000 0.0 0.0 0.00 4.04 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.765969 ATTGGTGGAGCAGGGTGG 59.234 61.111 0.00 0.00 0.00 4.61
18 19 2.922704 ATTGGTGGAGCAGGGTGGG 61.923 63.158 0.00 0.00 0.00 4.61
19 20 4.918360 TGGTGGAGCAGGGTGGGT 62.918 66.667 0.00 0.00 0.00 4.51
20 21 4.035102 GGTGGAGCAGGGTGGGTC 62.035 72.222 0.00 0.00 34.62 4.46
21 22 4.394712 GTGGAGCAGGGTGGGTCG 62.395 72.222 0.00 0.00 36.17 4.79
34 35 4.373116 GGTCGCTGCCGAGGTTGA 62.373 66.667 0.00 0.00 45.38 3.18
35 36 3.112709 GTCGCTGCCGAGGTTGAC 61.113 66.667 0.00 0.00 45.38 3.18
36 37 4.717629 TCGCTGCCGAGGTTGACG 62.718 66.667 0.00 0.00 38.82 4.35
43 44 4.891566 CGAGGTTGACGGAGGAAG 57.108 61.111 0.00 0.00 0.00 3.46
44 45 2.264124 CGAGGTTGACGGAGGAAGA 58.736 57.895 0.00 0.00 0.00 2.87
45 46 0.171455 CGAGGTTGACGGAGGAAGAG 59.829 60.000 0.00 0.00 0.00 2.85
46 47 1.546961 GAGGTTGACGGAGGAAGAGA 58.453 55.000 0.00 0.00 0.00 3.10
47 48 1.893801 GAGGTTGACGGAGGAAGAGAA 59.106 52.381 0.00 0.00 0.00 2.87
48 49 2.299297 GAGGTTGACGGAGGAAGAGAAA 59.701 50.000 0.00 0.00 0.00 2.52
49 50 2.300437 AGGTTGACGGAGGAAGAGAAAG 59.700 50.000 0.00 0.00 0.00 2.62
50 51 2.037381 GGTTGACGGAGGAAGAGAAAGT 59.963 50.000 0.00 0.00 0.00 2.66
51 52 3.318886 GTTGACGGAGGAAGAGAAAGTC 58.681 50.000 0.00 0.00 0.00 3.01
52 53 2.877866 TGACGGAGGAAGAGAAAGTCT 58.122 47.619 0.00 0.00 36.94 3.24
53 54 2.820787 TGACGGAGGAAGAGAAAGTCTC 59.179 50.000 0.00 0.00 43.70 3.36
63 64 3.170791 GAGAAAGTCTCGATGCCATCA 57.829 47.619 5.40 0.00 33.35 3.07
64 65 3.726607 GAGAAAGTCTCGATGCCATCAT 58.273 45.455 5.40 0.00 33.35 2.45
65 66 4.876125 GAGAAAGTCTCGATGCCATCATA 58.124 43.478 5.40 0.00 33.35 2.15
66 67 5.477510 GAGAAAGTCTCGATGCCATCATAT 58.522 41.667 5.40 0.00 33.35 1.78
67 68 6.596309 AGAAAGTCTCGATGCCATCATATA 57.404 37.500 5.40 0.00 31.96 0.86
68 69 6.393990 AGAAAGTCTCGATGCCATCATATAC 58.606 40.000 5.40 0.00 31.96 1.47
69 70 4.362932 AGTCTCGATGCCATCATATACG 57.637 45.455 5.40 0.00 31.96 3.06
70 71 4.010349 AGTCTCGATGCCATCATATACGA 58.990 43.478 5.40 0.00 31.96 3.43
71 72 4.095632 AGTCTCGATGCCATCATATACGAG 59.904 45.833 5.40 0.00 41.76 4.18
72 73 4.095036 GTCTCGATGCCATCATATACGAGA 59.905 45.833 9.13 9.13 44.28 4.04
73 74 4.333926 TCTCGATGCCATCATATACGAGAG 59.666 45.833 9.13 3.54 42.97 3.20
74 75 4.010349 TCGATGCCATCATATACGAGAGT 58.990 43.478 5.40 0.00 39.80 3.24
75 76 4.101235 CGATGCCATCATATACGAGAGTG 58.899 47.826 5.40 0.00 37.81 3.51
76 77 4.379918 CGATGCCATCATATACGAGAGTGT 60.380 45.833 5.40 0.00 37.81 3.55
77 78 5.163754 CGATGCCATCATATACGAGAGTGTA 60.164 44.000 5.40 0.00 41.96 2.90
78 79 6.261859 GATGCCATCATATACGAGAGTGTAG 58.738 44.000 0.00 0.00 41.05 2.74
79 80 6.679146 GATGCCATCATATACGAGAGTGTAGG 60.679 46.154 0.00 0.00 41.05 3.18
88 89 3.215975 ACGAGAGTGTAGGATAAGAGGC 58.784 50.000 0.00 0.00 46.97 4.70
89 90 2.554893 CGAGAGTGTAGGATAAGAGGCC 59.445 54.545 0.00 0.00 0.00 5.19
90 91 3.567397 GAGAGTGTAGGATAAGAGGCCA 58.433 50.000 5.01 0.00 0.00 5.36
91 92 3.301274 AGAGTGTAGGATAAGAGGCCAC 58.699 50.000 5.01 0.00 0.00 5.01
92 93 2.032620 AGTGTAGGATAAGAGGCCACG 58.967 52.381 5.01 0.00 0.00 4.94
93 94 2.029623 GTGTAGGATAAGAGGCCACGA 58.970 52.381 5.01 0.00 0.00 4.35
94 95 2.029623 TGTAGGATAAGAGGCCACGAC 58.970 52.381 5.01 0.00 0.00 4.34
95 96 1.340568 GTAGGATAAGAGGCCACGACC 59.659 57.143 5.01 2.67 0.00 4.79
96 97 1.049289 AGGATAAGAGGCCACGACCC 61.049 60.000 5.01 0.40 0.00 4.46
97 98 1.049289 GGATAAGAGGCCACGACCCT 61.049 60.000 5.01 0.00 34.77 4.34
98 99 0.105039 GATAAGAGGCCACGACCCTG 59.895 60.000 5.01 0.00 31.41 4.45
99 100 1.338136 ATAAGAGGCCACGACCCTGG 61.338 60.000 5.01 0.00 31.41 4.45
102 103 4.326227 AGGCCACGACCCTGGGTA 62.326 66.667 20.61 0.00 35.25 3.69
103 104 3.782443 GGCCACGACCCTGGGTAG 61.782 72.222 20.61 21.75 35.25 3.18
104 105 2.682494 GCCACGACCCTGGGTAGA 60.682 66.667 29.60 0.00 35.25 2.59
105 106 2.722201 GCCACGACCCTGGGTAGAG 61.722 68.421 29.60 22.03 35.25 2.43
106 107 2.058595 CCACGACCCTGGGTAGAGG 61.059 68.421 29.60 26.41 35.25 3.69
107 108 1.000019 CACGACCCTGGGTAGAGGA 60.000 63.158 29.60 0.00 35.25 3.71
108 109 0.397254 CACGACCCTGGGTAGAGGAT 60.397 60.000 29.60 6.98 35.25 3.24
109 110 0.397254 ACGACCCTGGGTAGAGGATG 60.397 60.000 29.60 11.55 35.25 3.51
110 111 0.106167 CGACCCTGGGTAGAGGATGA 60.106 60.000 20.61 0.00 35.25 2.92
111 112 1.710816 GACCCTGGGTAGAGGATGAG 58.289 60.000 20.61 0.00 35.25 2.90
112 113 1.218196 GACCCTGGGTAGAGGATGAGA 59.782 57.143 20.61 0.00 35.25 3.27
113 114 1.869648 ACCCTGGGTAGAGGATGAGAT 59.130 52.381 18.99 0.00 34.69 2.75
114 115 2.255406 CCCTGGGTAGAGGATGAGATG 58.745 57.143 3.97 0.00 34.69 2.90
115 116 2.255406 CCTGGGTAGAGGATGAGATGG 58.745 57.143 0.00 0.00 34.69 3.51
116 117 2.158249 CCTGGGTAGAGGATGAGATGGA 60.158 54.545 0.00 0.00 34.69 3.41
117 118 2.896685 CTGGGTAGAGGATGAGATGGAC 59.103 54.545 0.00 0.00 0.00 4.02
118 119 1.889829 GGGTAGAGGATGAGATGGACG 59.110 57.143 0.00 0.00 0.00 4.79
119 120 2.489255 GGGTAGAGGATGAGATGGACGA 60.489 54.545 0.00 0.00 0.00 4.20
120 121 2.817258 GGTAGAGGATGAGATGGACGAG 59.183 54.545 0.00 0.00 0.00 4.18
121 122 3.497048 GGTAGAGGATGAGATGGACGAGA 60.497 52.174 0.00 0.00 0.00 4.04
122 123 2.862541 AGAGGATGAGATGGACGAGAG 58.137 52.381 0.00 0.00 0.00 3.20
123 124 1.885887 GAGGATGAGATGGACGAGAGG 59.114 57.143 0.00 0.00 0.00 3.69
124 125 1.496857 AGGATGAGATGGACGAGAGGA 59.503 52.381 0.00 0.00 0.00 3.71
125 126 1.885887 GGATGAGATGGACGAGAGGAG 59.114 57.143 0.00 0.00 0.00 3.69
126 127 1.885887 GATGAGATGGACGAGAGGAGG 59.114 57.143 0.00 0.00 0.00 4.30
127 128 0.919710 TGAGATGGACGAGAGGAGGA 59.080 55.000 0.00 0.00 0.00 3.71
128 129 1.285078 TGAGATGGACGAGAGGAGGAA 59.715 52.381 0.00 0.00 0.00 3.36
129 130 1.953686 GAGATGGACGAGAGGAGGAAG 59.046 57.143 0.00 0.00 0.00 3.46
130 131 1.566703 AGATGGACGAGAGGAGGAAGA 59.433 52.381 0.00 0.00 0.00 2.87
131 132 2.024846 AGATGGACGAGAGGAGGAAGAA 60.025 50.000 0.00 0.00 0.00 2.52
132 133 1.840737 TGGACGAGAGGAGGAAGAAG 58.159 55.000 0.00 0.00 0.00 2.85
133 134 1.354705 TGGACGAGAGGAGGAAGAAGA 59.645 52.381 0.00 0.00 0.00 2.87
134 135 2.225041 TGGACGAGAGGAGGAAGAAGAA 60.225 50.000 0.00 0.00 0.00 2.52
135 136 2.826725 GGACGAGAGGAGGAAGAAGAAA 59.173 50.000 0.00 0.00 0.00 2.52
136 137 3.367600 GGACGAGAGGAGGAAGAAGAAAC 60.368 52.174 0.00 0.00 0.00 2.78
137 138 3.231818 ACGAGAGGAGGAAGAAGAAACA 58.768 45.455 0.00 0.00 0.00 2.83
138 139 3.835395 ACGAGAGGAGGAAGAAGAAACAT 59.165 43.478 0.00 0.00 0.00 2.71
139 140 4.284746 ACGAGAGGAGGAAGAAGAAACATT 59.715 41.667 0.00 0.00 0.00 2.71
140 141 4.867608 CGAGAGGAGGAAGAAGAAACATTC 59.132 45.833 0.00 0.00 0.00 2.67
141 142 5.172687 AGAGGAGGAAGAAGAAACATTCC 57.827 43.478 0.00 0.00 42.37 3.01
142 143 3.935828 GAGGAGGAAGAAGAAACATTCCG 59.064 47.826 0.00 0.00 45.84 4.30
143 144 3.010420 GGAGGAAGAAGAAACATTCCGG 58.990 50.000 0.00 0.00 45.84 5.14
144 145 3.559384 GGAGGAAGAAGAAACATTCCGGT 60.559 47.826 0.00 0.00 45.84 5.28
145 146 3.676093 AGGAAGAAGAAACATTCCGGTC 58.324 45.455 0.00 0.00 45.84 4.79
146 147 2.415512 GGAAGAAGAAACATTCCGGTCG 59.584 50.000 0.00 0.00 33.67 4.79
147 148 2.833631 AGAAGAAACATTCCGGTCGT 57.166 45.000 0.00 0.00 0.00 4.34
148 149 3.947910 AGAAGAAACATTCCGGTCGTA 57.052 42.857 0.00 0.00 0.00 3.43
149 150 4.467198 AGAAGAAACATTCCGGTCGTAT 57.533 40.909 0.00 0.00 0.00 3.06
150 151 4.181578 AGAAGAAACATTCCGGTCGTATG 58.818 43.478 0.00 4.28 0.00 2.39
151 152 2.901249 AGAAACATTCCGGTCGTATGG 58.099 47.619 0.00 0.00 0.00 2.74
152 153 2.498481 AGAAACATTCCGGTCGTATGGA 59.502 45.455 0.00 0.00 0.00 3.41
153 154 2.596904 AACATTCCGGTCGTATGGAG 57.403 50.000 0.00 0.00 35.26 3.86
154 155 1.771565 ACATTCCGGTCGTATGGAGA 58.228 50.000 0.00 0.00 35.26 3.71
155 156 1.681793 ACATTCCGGTCGTATGGAGAG 59.318 52.381 0.00 0.00 35.26 3.20
156 157 1.681793 CATTCCGGTCGTATGGAGAGT 59.318 52.381 0.00 0.00 35.26 3.24
157 158 2.715749 TTCCGGTCGTATGGAGAGTA 57.284 50.000 0.00 0.00 35.26 2.59
158 159 2.251409 TCCGGTCGTATGGAGAGTAG 57.749 55.000 0.00 0.00 0.00 2.57
159 160 0.592148 CCGGTCGTATGGAGAGTAGC 59.408 60.000 0.00 0.00 0.00 3.58
160 161 0.235144 CGGTCGTATGGAGAGTAGCG 59.765 60.000 0.00 0.00 0.00 4.26
161 162 0.592148 GGTCGTATGGAGAGTAGCGG 59.408 60.000 0.00 0.00 0.00 5.52
162 163 1.307097 GTCGTATGGAGAGTAGCGGT 58.693 55.000 0.00 0.00 0.00 5.68
163 164 1.002684 GTCGTATGGAGAGTAGCGGTG 60.003 57.143 0.00 0.00 0.00 4.94
164 165 0.311165 CGTATGGAGAGTAGCGGTGG 59.689 60.000 0.00 0.00 0.00 4.61
165 166 1.688772 GTATGGAGAGTAGCGGTGGA 58.311 55.000 0.00 0.00 0.00 4.02
166 167 2.029623 GTATGGAGAGTAGCGGTGGAA 58.970 52.381 0.00 0.00 0.00 3.53
167 168 1.115467 ATGGAGAGTAGCGGTGGAAG 58.885 55.000 0.00 0.00 0.00 3.46
168 169 0.970937 TGGAGAGTAGCGGTGGAAGG 60.971 60.000 0.00 0.00 0.00 3.46
169 170 1.142097 GAGAGTAGCGGTGGAAGGC 59.858 63.158 0.00 0.00 0.00 4.35
170 171 1.605058 GAGAGTAGCGGTGGAAGGCA 61.605 60.000 0.00 0.00 0.00 4.75
171 172 1.192146 AGAGTAGCGGTGGAAGGCAA 61.192 55.000 0.00 0.00 0.00 4.52
172 173 0.321298 GAGTAGCGGTGGAAGGCAAA 60.321 55.000 0.00 0.00 0.00 3.68
173 174 0.109723 AGTAGCGGTGGAAGGCAAAA 59.890 50.000 0.00 0.00 0.00 2.44
174 175 0.521735 GTAGCGGTGGAAGGCAAAAG 59.478 55.000 0.00 0.00 0.00 2.27
175 176 0.398696 TAGCGGTGGAAGGCAAAAGA 59.601 50.000 0.00 0.00 0.00 2.52
176 177 0.251341 AGCGGTGGAAGGCAAAAGAT 60.251 50.000 0.00 0.00 0.00 2.40
177 178 0.109132 GCGGTGGAAGGCAAAAGATG 60.109 55.000 0.00 0.00 0.00 2.90
178 179 1.533625 CGGTGGAAGGCAAAAGATGA 58.466 50.000 0.00 0.00 0.00 2.92
179 180 1.885887 CGGTGGAAGGCAAAAGATGAA 59.114 47.619 0.00 0.00 0.00 2.57
180 181 2.095059 CGGTGGAAGGCAAAAGATGAAG 60.095 50.000 0.00 0.00 0.00 3.02
181 182 3.157087 GGTGGAAGGCAAAAGATGAAGA 58.843 45.455 0.00 0.00 0.00 2.87
182 183 3.192212 GGTGGAAGGCAAAAGATGAAGAG 59.808 47.826 0.00 0.00 0.00 2.85
183 184 3.192212 GTGGAAGGCAAAAGATGAAGAGG 59.808 47.826 0.00 0.00 0.00 3.69
184 185 2.165234 GGAAGGCAAAAGATGAAGAGGC 59.835 50.000 0.00 0.00 0.00 4.70
185 186 1.844687 AGGCAAAAGATGAAGAGGCC 58.155 50.000 0.00 0.00 40.18 5.19
186 187 1.076024 AGGCAAAAGATGAAGAGGCCA 59.924 47.619 5.01 0.00 42.26 5.36
187 188 2.105766 GGCAAAAGATGAAGAGGCCAT 58.894 47.619 5.01 0.00 39.66 4.40
188 189 2.159142 GGCAAAAGATGAAGAGGCCATG 60.159 50.000 5.01 0.00 39.66 3.66
189 190 2.756760 GCAAAAGATGAAGAGGCCATGA 59.243 45.455 5.01 0.00 0.00 3.07
190 191 3.428589 GCAAAAGATGAAGAGGCCATGAC 60.429 47.826 5.01 0.00 0.00 3.06
191 192 2.322355 AAGATGAAGAGGCCATGACG 57.678 50.000 5.01 0.00 0.00 4.35
192 193 1.489481 AGATGAAGAGGCCATGACGA 58.511 50.000 5.01 0.00 0.00 4.20
193 194 1.833630 AGATGAAGAGGCCATGACGAA 59.166 47.619 5.01 0.00 0.00 3.85
194 195 2.237143 AGATGAAGAGGCCATGACGAAA 59.763 45.455 5.01 0.00 0.00 3.46
195 196 2.559698 TGAAGAGGCCATGACGAAAA 57.440 45.000 5.01 0.00 0.00 2.29
196 197 2.857483 TGAAGAGGCCATGACGAAAAA 58.143 42.857 5.01 0.00 0.00 1.94
197 198 2.813754 TGAAGAGGCCATGACGAAAAAG 59.186 45.455 5.01 0.00 0.00 2.27
198 199 1.168714 AGAGGCCATGACGAAAAAGC 58.831 50.000 5.01 0.00 0.00 3.51
199 200 0.179189 GAGGCCATGACGAAAAAGCG 60.179 55.000 5.01 0.00 37.29 4.68
200 201 0.605319 AGGCCATGACGAAAAAGCGA 60.605 50.000 5.01 0.00 34.83 4.93
201 202 0.451783 GGCCATGACGAAAAAGCGAT 59.548 50.000 0.00 0.00 34.83 4.58
202 203 1.538276 GCCATGACGAAAAAGCGATG 58.462 50.000 0.00 0.00 34.83 3.84
203 204 1.130373 GCCATGACGAAAAAGCGATGA 59.870 47.619 0.00 0.00 34.83 2.92
204 205 2.789092 GCCATGACGAAAAAGCGATGAG 60.789 50.000 0.00 0.00 34.83 2.90
215 216 3.022981 GCGATGAGCTAGATACGGC 57.977 57.895 0.00 0.00 44.04 5.68
216 217 0.794981 GCGATGAGCTAGATACGGCG 60.795 60.000 4.80 4.80 44.04 6.46
217 218 0.179187 CGATGAGCTAGATACGGCGG 60.179 60.000 13.24 0.00 0.00 6.13
218 219 0.882474 GATGAGCTAGATACGGCGGT 59.118 55.000 13.24 1.39 0.00 5.68
219 220 0.598562 ATGAGCTAGATACGGCGGTG 59.401 55.000 13.24 0.00 0.00 4.94
220 221 1.286260 GAGCTAGATACGGCGGTGG 59.714 63.158 13.24 0.00 0.00 4.61
221 222 1.453762 GAGCTAGATACGGCGGTGGT 61.454 60.000 13.24 0.00 0.00 4.16
222 223 1.299926 GCTAGATACGGCGGTGGTG 60.300 63.158 13.24 0.00 0.00 4.17
223 224 1.731433 GCTAGATACGGCGGTGGTGA 61.731 60.000 13.24 0.00 0.00 4.02
224 225 0.742505 CTAGATACGGCGGTGGTGAA 59.257 55.000 13.24 0.00 0.00 3.18
225 226 1.135527 CTAGATACGGCGGTGGTGAAA 59.864 52.381 13.24 0.00 0.00 2.69
226 227 0.322322 AGATACGGCGGTGGTGAAAA 59.678 50.000 13.24 0.00 0.00 2.29
227 228 1.158434 GATACGGCGGTGGTGAAAAA 58.842 50.000 13.24 0.00 0.00 1.94
228 229 1.129811 GATACGGCGGTGGTGAAAAAG 59.870 52.381 13.24 0.00 0.00 2.27
229 230 0.885596 TACGGCGGTGGTGAAAAAGG 60.886 55.000 13.24 0.00 0.00 3.11
230 231 2.190841 CGGCGGTGGTGAAAAAGGT 61.191 57.895 0.00 0.00 0.00 3.50
231 232 1.362355 GGCGGTGGTGAAAAAGGTG 59.638 57.895 0.00 0.00 0.00 4.00
232 233 1.104577 GGCGGTGGTGAAAAAGGTGA 61.105 55.000 0.00 0.00 0.00 4.02
233 234 0.741915 GCGGTGGTGAAAAAGGTGAA 59.258 50.000 0.00 0.00 0.00 3.18
234 235 1.135333 GCGGTGGTGAAAAAGGTGAAA 59.865 47.619 0.00 0.00 0.00 2.69
235 236 2.223947 GCGGTGGTGAAAAAGGTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
236 237 3.739830 GCGGTGGTGAAAAAGGTGAAATT 60.740 43.478 0.00 0.00 0.00 1.82
237 238 4.438148 CGGTGGTGAAAAAGGTGAAATTT 58.562 39.130 0.00 0.00 0.00 1.82
238 239 5.593010 CGGTGGTGAAAAAGGTGAAATTTA 58.407 37.500 0.00 0.00 0.00 1.40
239 240 6.220201 CGGTGGTGAAAAAGGTGAAATTTAT 58.780 36.000 0.00 0.00 0.00 1.40
240 241 7.371936 CGGTGGTGAAAAAGGTGAAATTTATA 58.628 34.615 0.00 0.00 0.00 0.98
241 242 7.540745 CGGTGGTGAAAAAGGTGAAATTTATAG 59.459 37.037 0.00 0.00 0.00 1.31
242 243 7.817478 GGTGGTGAAAAAGGTGAAATTTATAGG 59.183 37.037 0.00 0.00 0.00 2.57
243 244 8.364894 GTGGTGAAAAAGGTGAAATTTATAGGT 58.635 33.333 0.00 0.00 0.00 3.08
244 245 9.589461 TGGTGAAAAAGGTGAAATTTATAGGTA 57.411 29.630 0.00 0.00 0.00 3.08
248 249 9.582431 GAAAAAGGTGAAATTTATAGGTAAGGC 57.418 33.333 0.00 0.00 0.00 4.35
249 250 8.895141 AAAAGGTGAAATTTATAGGTAAGGCT 57.105 30.769 0.00 0.00 0.00 4.58
250 251 8.895141 AAAGGTGAAATTTATAGGTAAGGCTT 57.105 30.769 4.58 4.58 0.00 4.35
251 252 9.984590 AAAGGTGAAATTTATAGGTAAGGCTTA 57.015 29.630 2.04 2.04 0.00 3.09
252 253 9.628500 AAGGTGAAATTTATAGGTAAGGCTTAG 57.372 33.333 7.33 0.00 0.00 2.18
253 254 8.779031 AGGTGAAATTTATAGGTAAGGCTTAGT 58.221 33.333 7.33 0.64 0.00 2.24
254 255 9.053840 GGTGAAATTTATAGGTAAGGCTTAGTC 57.946 37.037 7.33 3.41 0.00 2.59
255 256 8.762426 GTGAAATTTATAGGTAAGGCTTAGTCG 58.238 37.037 7.33 0.00 0.00 4.18
256 257 7.440255 TGAAATTTATAGGTAAGGCTTAGTCGC 59.560 37.037 7.33 0.00 0.00 5.19
277 278 4.020543 GCCTTACCCCATCACATTTAACA 58.979 43.478 0.00 0.00 0.00 2.41
298 299 3.947612 AAGAGATACTACCACGAGGGA 57.052 47.619 3.29 0.00 41.15 4.20
300 301 4.023726 AGAGATACTACCACGAGGGATC 57.976 50.000 3.29 0.99 41.15 3.36
311 312 2.668457 CACGAGGGATCTTTCGTTCTTG 59.332 50.000 18.04 7.47 46.87 3.02
315 316 2.237392 AGGGATCTTTCGTTCTTGGGAG 59.763 50.000 0.00 0.00 0.00 4.30
316 317 2.027100 GGGATCTTTCGTTCTTGGGAGT 60.027 50.000 0.00 0.00 0.00 3.85
336 337 1.202952 TGCGGGACAGTAAAAACCCAT 60.203 47.619 0.00 0.00 42.16 4.00
337 338 1.201414 GCGGGACAGTAAAAACCCATG 59.799 52.381 0.00 0.00 42.16 3.66
338 339 1.201414 CGGGACAGTAAAAACCCATGC 59.799 52.381 0.00 0.00 42.16 4.06
358 359 2.125106 GGGATCGAAAGCGGCACT 60.125 61.111 1.45 0.00 38.28 4.40
381 382 0.111061 TGGAGTTGAGCCACTGCAAT 59.889 50.000 0.64 0.00 41.69 3.56
388 389 0.801251 GAGCCACTGCAATGTCTCAC 59.199 55.000 0.64 0.00 41.13 3.51
394 395 1.354337 CTGCAATGTCTCACGTCCCG 61.354 60.000 0.00 0.00 0.00 5.14
401 402 1.071071 TGTCTCACGTCCCGGAAAAAT 59.929 47.619 0.73 0.00 0.00 1.82
433 434 1.263217 CTTTTCCCACTCGAAACACGG 59.737 52.381 0.00 0.00 42.82 4.94
454 455 2.159282 GCGACAGTAATTTCCGAGGAGA 60.159 50.000 0.00 0.00 0.00 3.71
459 460 4.712337 ACAGTAATTTCCGAGGAGATCACT 59.288 41.667 0.00 0.00 0.00 3.41
464 465 5.878406 ATTTCCGAGGAGATCACTGTTAT 57.122 39.130 0.00 0.00 0.00 1.89
465 466 5.677319 TTTCCGAGGAGATCACTGTTATT 57.323 39.130 0.00 0.00 0.00 1.40
498 499 1.205655 CACCCACATCGTGATCAGAGT 59.794 52.381 0.00 0.00 35.23 3.24
509 510 1.279846 TGATCAGAGTGCATGCCTTCA 59.720 47.619 16.68 9.30 0.00 3.02
510 511 2.290450 TGATCAGAGTGCATGCCTTCAA 60.290 45.455 16.68 5.76 0.00 2.69
523 524 3.096092 TGCCTTCAACTTTGACCACTTT 58.904 40.909 0.00 0.00 36.83 2.66
524 525 3.119173 TGCCTTCAACTTTGACCACTTTG 60.119 43.478 0.00 0.00 36.83 2.77
534 535 5.125578 ACTTTGACCACTTTGAAAGAACTCC 59.874 40.000 12.53 0.00 31.24 3.85
535 536 3.202906 TGACCACTTTGAAAGAACTCCG 58.797 45.455 12.53 0.00 0.00 4.63
536 537 1.947456 ACCACTTTGAAAGAACTCCGC 59.053 47.619 12.53 0.00 0.00 5.54
540 541 1.512156 TTTGAAAGAACTCCGCGGGC 61.512 55.000 27.83 12.63 0.00 6.13
541 542 2.047179 GAAAGAACTCCGCGGGCT 60.047 61.111 27.83 14.83 0.00 5.19
542 543 1.217244 GAAAGAACTCCGCGGGCTA 59.783 57.895 27.83 4.76 0.00 3.93
545 546 3.839432 GAACTCCGCGGGCTAGCT 61.839 66.667 27.83 6.63 34.40 3.32
546 547 3.776659 GAACTCCGCGGGCTAGCTC 62.777 68.421 27.83 12.69 34.40 4.09
547 548 4.824515 ACTCCGCGGGCTAGCTCT 62.825 66.667 27.83 0.00 34.40 4.09
557 558 2.566570 GCTAGCTCTCGGGGGCTAC 61.567 68.421 14.43 6.91 39.65 3.58
580 581 2.922740 TGGAACATTAGATACCGGGC 57.077 50.000 6.32 0.00 0.00 6.13
581 582 2.120312 TGGAACATTAGATACCGGGCA 58.880 47.619 6.32 0.00 0.00 5.36
582 583 2.708861 TGGAACATTAGATACCGGGCAT 59.291 45.455 6.32 0.00 0.00 4.40
583 584 3.904965 TGGAACATTAGATACCGGGCATA 59.095 43.478 6.32 0.00 0.00 3.14
584 585 4.251268 GGAACATTAGATACCGGGCATAC 58.749 47.826 6.32 0.00 0.00 2.39
585 586 4.262721 GGAACATTAGATACCGGGCATACA 60.263 45.833 6.32 0.00 0.00 2.29
586 587 5.488341 GAACATTAGATACCGGGCATACAT 58.512 41.667 6.32 0.00 0.00 2.29
602 605 7.201401 CGGGCATACATAAAGTTTAAGTTTTGC 60.201 37.037 19.71 19.71 0.00 3.68
603 606 7.600752 GGGCATACATAAAGTTTAAGTTTTGCA 59.399 33.333 24.39 6.81 0.00 4.08
611 614 4.532834 AGTTTAAGTTTTGCACCCTCTCA 58.467 39.130 0.00 0.00 0.00 3.27
618 621 4.287067 AGTTTTGCACCCTCTCAGAGATAA 59.713 41.667 2.09 0.00 0.00 1.75
629 632 4.033009 TCTCAGAGATAAGTTGGCATGGA 58.967 43.478 0.00 0.00 0.00 3.41
640 643 6.859420 AAGTTGGCATGGAAAAATACAAAC 57.141 33.333 0.00 0.00 0.00 2.93
650 653 4.441744 GGAAAAATACAAACGAAACACCGG 59.558 41.667 0.00 0.00 0.00 5.28
652 655 4.477302 AAATACAAACGAAACACCGGAG 57.523 40.909 9.46 1.26 0.00 4.63
671 674 4.559153 GGAGTGCACTACGGTAAAAAGTA 58.441 43.478 21.73 0.00 0.00 2.24
715 718 6.182627 TGCAGGATCTATGAAGAACAAACAT 58.817 36.000 3.08 0.00 34.73 2.71
719 722 5.817816 GGATCTATGAAGAACAAACATCCGT 59.182 40.000 0.00 0.00 34.73 4.69
721 724 7.494625 GGATCTATGAAGAACAAACATCCGTAA 59.505 37.037 0.00 0.00 34.73 3.18
764 767 3.190849 CCAGCCATGACGCACTCG 61.191 66.667 0.00 0.00 42.43 4.18
778 781 2.770048 CTCGGGGGCTGAATCCCT 60.770 66.667 0.00 0.00 45.80 4.20
779 782 1.459539 CTCGGGGGCTGAATCCCTA 60.460 63.158 0.00 0.00 45.80 3.53
782 785 1.151679 GGGGGCTGAATCCCTAAGC 59.848 63.158 0.00 0.00 45.80 3.09
789 792 1.482593 CTGAATCCCTAAGCAGACGGT 59.517 52.381 0.00 0.00 0.00 4.83
807 810 1.301423 GTACACGTGTTGGCCAGAAA 58.699 50.000 28.55 1.54 0.00 2.52
821 824 1.321474 CAGAAAGGCTGGTCTTGCAA 58.679 50.000 0.00 0.00 41.07 4.08
943 947 3.460857 AGATCAGATACGACAAAGCCC 57.539 47.619 0.00 0.00 0.00 5.19
947 951 1.927174 CAGATACGACAAAGCCCGAAG 59.073 52.381 0.00 0.00 0.00 3.79
1000 1004 2.019984 GTTGGATTCCATCACTGCTCC 58.980 52.381 6.15 0.00 31.53 4.70
1031 1054 6.014584 TCGCCCTCACATACATACATTTAGAT 60.015 38.462 0.00 0.00 0.00 1.98
1157 1181 1.033202 TGACCGTAGCTGCGATGGTA 61.033 55.000 26.43 11.50 36.29 3.25
1185 1209 0.793250 GACAAGAACGAGAAGCCTGC 59.207 55.000 0.00 0.00 0.00 4.85
1192 1216 0.685097 ACGAGAAGCCTGCCAGTTTA 59.315 50.000 0.00 0.00 0.00 2.01
1279 1303 3.947868 AGTGGATATGCCTATGATGCAC 58.052 45.455 0.00 0.00 42.38 4.57
1474 1499 2.894765 TCAACCAGTGATCGTACCAAGA 59.105 45.455 0.00 0.00 0.00 3.02
1475 1500 3.322541 TCAACCAGTGATCGTACCAAGAA 59.677 43.478 0.00 0.00 0.00 2.52
1505 1530 0.323629 TTGGACCGACAGGGAACATC 59.676 55.000 0.00 0.00 43.47 3.06
1556 1582 9.708222 CATTTATCTTTCAAATTCCTACACTCG 57.292 33.333 0.00 0.00 0.00 4.18
1664 1732 6.071391 AGTGCTTTAGTTTCACATTTATGGGG 60.071 38.462 0.00 0.00 33.44 4.96
1934 2006 4.623167 CAGTGCTTACTCATGTACACTCAC 59.377 45.833 0.00 0.00 35.29 3.51
1942 2014 5.853936 ACTCATGTACACTCACTTGCTTTA 58.146 37.500 0.00 0.00 0.00 1.85
2046 2119 9.912634 AAAATATTTGTATGTTTCACACCTCAG 57.087 29.630 0.39 0.00 0.00 3.35
2223 2299 3.766545 TGGTTATGCAAGGCTCTTTCTT 58.233 40.909 0.00 0.00 0.00 2.52
2376 2452 0.734889 GGCAACGCTACAGCATCAAT 59.265 50.000 1.61 0.00 42.21 2.57
2531 2607 5.213891 TCAGCCTGAATAATATCGCTCAA 57.786 39.130 0.00 0.00 0.00 3.02
2616 2692 8.642432 CATGTCTCAGTTACTATATTGGGAGAA 58.358 37.037 0.00 0.00 32.56 2.87
2725 2804 9.999660 TGTTTTTACTATAACACATGTCCACTA 57.000 29.630 0.00 0.00 29.82 2.74
2807 2899 3.996150 AAATGACACAAGTGGCTTCAG 57.004 42.857 7.67 0.00 39.96 3.02
3018 3114 2.092375 CCCCTCTTGTATCTGTTTCCCC 60.092 54.545 0.00 0.00 0.00 4.81
3051 3147 1.210722 CCTCTAGAACCTTTCCAGCCC 59.789 57.143 0.00 0.00 0.00 5.19
3059 3155 1.289244 CCTTTCCAGCCCCATACCCT 61.289 60.000 0.00 0.00 0.00 4.34
3086 3183 3.099905 GGCTTTTCTCCTTGCCCTTTAT 58.900 45.455 0.00 0.00 39.49 1.40
3103 3200 3.652057 TTATTGGCAGCTCTAAAGGCT 57.348 42.857 0.00 0.00 41.07 4.58
3131 3228 1.651770 AGGATGAGGTGGAGGAAGGTA 59.348 52.381 0.00 0.00 0.00 3.08
3176 3273 9.823647 ACATTGTCATGTATTTTAAACAAACCA 57.176 25.926 0.00 0.00 42.24 3.67
3250 3347 1.067495 GGTTGGGAGAGAAGTCACTCG 60.067 57.143 0.54 0.00 41.25 4.18
3302 3399 8.409371 TCTTTGCAATACATTGTTCTGTGTTTA 58.591 29.630 0.00 0.00 39.88 2.01
3353 3450 5.047519 CCAATTTCATCCTCTCACTTGCTTT 60.048 40.000 0.00 0.00 0.00 3.51
3354 3451 5.640189 ATTTCATCCTCTCACTTGCTTTG 57.360 39.130 0.00 0.00 0.00 2.77
3382 3479 3.150458 TGAGAGAGAAACCGGTGACTA 57.850 47.619 8.52 0.00 0.00 2.59
3426 3524 9.461312 TTCTACAAACCAAAGCATGTCTTATAT 57.539 29.630 0.00 0.00 33.88 0.86
3473 3571 4.716784 AGGTTGTAGTCAATAGGATGCTCA 59.283 41.667 0.00 0.00 35.92 4.26
3492 3590 3.812262 TCACATCCACATATGCCTTCTG 58.188 45.455 1.58 0.00 0.00 3.02
3493 3591 2.882761 CACATCCACATATGCCTTCTGG 59.117 50.000 1.58 2.68 0.00 3.86
3509 3607 5.643348 GCCTTCTGGTAAAAATGGAAAATGG 59.357 40.000 0.00 0.00 35.27 3.16
3531 3629 5.186797 TGGATCAAGTTTGTTTTGGTCAACT 59.813 36.000 0.00 0.00 37.39 3.16
3541 3639 4.991687 TGTTTTGGTCAACTGGTTTCAAAC 59.008 37.500 0.00 0.00 0.00 2.93
3578 3676 2.201708 CGGCCATTGCATGCCCATA 61.202 57.895 16.68 0.00 45.07 2.74
3605 3703 6.006275 ACTACTAATAGGTCTGGTTACCGA 57.994 41.667 0.00 0.00 44.77 4.69
3607 3705 3.635836 ACTAATAGGTCTGGTTACCGAGC 59.364 47.826 14.23 14.23 44.77 5.03
3609 3707 2.154567 TAGGTCTGGTTACCGAGCAT 57.845 50.000 20.58 11.99 44.77 3.79
3610 3708 0.537188 AGGTCTGGTTACCGAGCATG 59.463 55.000 20.58 0.00 44.77 4.06
3621 3719 0.886490 CCGAGCATGATTAGGCACCC 60.886 60.000 0.00 0.00 35.71 4.61
3625 3723 0.877071 GCATGATTAGGCACCCATCG 59.123 55.000 0.00 0.00 32.92 3.84
3643 3741 9.319143 CACCCATCGATCCTATTATAATTCTTC 57.681 37.037 2.68 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.765969 CCACCCTGCTCCACCAAT 59.234 61.111 0.00 0.00 0.00 3.16
1 2 3.579302 CCCACCCTGCTCCACCAA 61.579 66.667 0.00 0.00 0.00 3.67
2 3 4.918360 ACCCACCCTGCTCCACCA 62.918 66.667 0.00 0.00 0.00 4.17
3 4 4.035102 GACCCACCCTGCTCCACC 62.035 72.222 0.00 0.00 0.00 4.61
4 5 4.394712 CGACCCACCCTGCTCCAC 62.395 72.222 0.00 0.00 0.00 4.02
7 8 4.767255 CAGCGACCCACCCTGCTC 62.767 72.222 0.00 0.00 34.99 4.26
17 18 4.373116 TCAACCTCGGCAGCGACC 62.373 66.667 0.00 0.00 0.00 4.79
18 19 3.112709 GTCAACCTCGGCAGCGAC 61.113 66.667 0.00 0.00 0.00 5.19
19 20 4.717629 CGTCAACCTCGGCAGCGA 62.718 66.667 0.00 0.00 0.00 4.93
21 22 4.373116 TCCGTCAACCTCGGCAGC 62.373 66.667 0.00 0.00 46.49 5.25
22 23 2.125912 CTCCGTCAACCTCGGCAG 60.126 66.667 0.00 0.00 46.49 4.85
23 24 3.691342 CCTCCGTCAACCTCGGCA 61.691 66.667 0.00 0.00 46.49 5.69
24 25 2.837371 CTTCCTCCGTCAACCTCGGC 62.837 65.000 0.00 0.00 46.49 5.54
26 27 0.171455 CTCTTCCTCCGTCAACCTCG 59.829 60.000 0.00 0.00 0.00 4.63
27 28 1.546961 TCTCTTCCTCCGTCAACCTC 58.453 55.000 0.00 0.00 0.00 3.85
28 29 2.011122 TTCTCTTCCTCCGTCAACCT 57.989 50.000 0.00 0.00 0.00 3.50
29 30 2.037381 ACTTTCTCTTCCTCCGTCAACC 59.963 50.000 0.00 0.00 0.00 3.77
30 31 3.006003 AGACTTTCTCTTCCTCCGTCAAC 59.994 47.826 0.00 0.00 0.00 3.18
31 32 3.231818 AGACTTTCTCTTCCTCCGTCAA 58.768 45.455 0.00 0.00 0.00 3.18
32 33 2.820787 GAGACTTTCTCTTCCTCCGTCA 59.179 50.000 0.00 0.00 40.30 4.35
33 34 2.159490 CGAGACTTTCTCTTCCTCCGTC 60.159 54.545 1.88 0.00 41.26 4.79
34 35 1.813786 CGAGACTTTCTCTTCCTCCGT 59.186 52.381 1.88 0.00 41.26 4.69
35 36 2.085320 TCGAGACTTTCTCTTCCTCCG 58.915 52.381 1.88 0.00 41.26 4.63
36 37 3.736740 GCATCGAGACTTTCTCTTCCTCC 60.737 52.174 1.88 0.00 41.26 4.30
37 38 3.443976 GCATCGAGACTTTCTCTTCCTC 58.556 50.000 1.88 0.00 41.26 3.71
38 39 2.167487 GGCATCGAGACTTTCTCTTCCT 59.833 50.000 1.88 0.00 41.26 3.36
39 40 2.093973 TGGCATCGAGACTTTCTCTTCC 60.094 50.000 1.88 0.00 41.26 3.46
40 41 3.238108 TGGCATCGAGACTTTCTCTTC 57.762 47.619 1.88 0.00 41.26 2.87
41 42 3.196469 TGATGGCATCGAGACTTTCTCTT 59.804 43.478 21.65 0.00 41.26 2.85
42 43 2.762887 TGATGGCATCGAGACTTTCTCT 59.237 45.455 21.65 0.00 41.26 3.10
43 44 3.170791 TGATGGCATCGAGACTTTCTC 57.829 47.619 21.65 0.00 40.06 2.87
44 45 3.834489 ATGATGGCATCGAGACTTTCT 57.166 42.857 21.65 0.00 0.00 2.52
45 46 5.287274 CGTATATGATGGCATCGAGACTTTC 59.713 44.000 21.65 7.16 35.94 2.62
46 47 5.048013 TCGTATATGATGGCATCGAGACTTT 60.048 40.000 21.65 5.73 35.94 2.66
47 48 4.459337 TCGTATATGATGGCATCGAGACTT 59.541 41.667 21.65 6.69 35.94 3.01
48 49 4.010349 TCGTATATGATGGCATCGAGACT 58.990 43.478 21.65 7.82 35.94 3.24
49 50 4.095036 TCTCGTATATGATGGCATCGAGAC 59.905 45.833 24.16 19.13 43.97 3.36
50 51 4.261801 TCTCGTATATGATGGCATCGAGA 58.738 43.478 24.16 24.16 45.31 4.04
51 52 4.095632 ACTCTCGTATATGATGGCATCGAG 59.904 45.833 21.65 21.42 42.78 4.04
52 53 4.010349 ACTCTCGTATATGATGGCATCGA 58.990 43.478 21.65 13.69 35.94 3.59
53 54 4.101235 CACTCTCGTATATGATGGCATCG 58.899 47.826 21.65 10.07 35.94 3.84
54 55 5.065704 ACACTCTCGTATATGATGGCATC 57.934 43.478 20.52 20.52 35.94 3.91
55 56 5.126222 CCTACACTCTCGTATATGATGGCAT 59.874 44.000 0.00 0.00 38.54 4.40
56 57 4.459337 CCTACACTCTCGTATATGATGGCA 59.541 45.833 0.00 0.00 0.00 4.92
57 58 4.700692 TCCTACACTCTCGTATATGATGGC 59.299 45.833 0.00 0.00 0.00 4.40
58 59 8.507524 TTATCCTACACTCTCGTATATGATGG 57.492 38.462 0.00 0.00 0.00 3.51
59 60 9.384764 TCTTATCCTACACTCTCGTATATGATG 57.615 37.037 0.00 0.00 0.00 3.07
60 61 9.607988 CTCTTATCCTACACTCTCGTATATGAT 57.392 37.037 0.00 0.00 0.00 2.45
61 62 8.041919 CCTCTTATCCTACACTCTCGTATATGA 58.958 40.741 0.00 0.00 0.00 2.15
62 63 7.201661 GCCTCTTATCCTACACTCTCGTATATG 60.202 44.444 0.00 0.00 0.00 1.78
63 64 6.824704 GCCTCTTATCCTACACTCTCGTATAT 59.175 42.308 0.00 0.00 0.00 0.86
64 65 6.171921 GCCTCTTATCCTACACTCTCGTATA 58.828 44.000 0.00 0.00 0.00 1.47
65 66 5.005094 GCCTCTTATCCTACACTCTCGTAT 58.995 45.833 0.00 0.00 0.00 3.06
66 67 4.387598 GCCTCTTATCCTACACTCTCGTA 58.612 47.826 0.00 0.00 0.00 3.43
67 68 3.215975 GCCTCTTATCCTACACTCTCGT 58.784 50.000 0.00 0.00 0.00 4.18
68 69 2.554893 GGCCTCTTATCCTACACTCTCG 59.445 54.545 0.00 0.00 0.00 4.04
69 70 3.319689 GTGGCCTCTTATCCTACACTCTC 59.680 52.174 3.32 0.00 0.00 3.20
70 71 3.301274 GTGGCCTCTTATCCTACACTCT 58.699 50.000 3.32 0.00 0.00 3.24
71 72 2.034812 CGTGGCCTCTTATCCTACACTC 59.965 54.545 3.32 0.00 0.00 3.51
72 73 2.032620 CGTGGCCTCTTATCCTACACT 58.967 52.381 3.32 0.00 0.00 3.55
73 74 2.029623 TCGTGGCCTCTTATCCTACAC 58.970 52.381 3.32 0.00 0.00 2.90
74 75 2.029623 GTCGTGGCCTCTTATCCTACA 58.970 52.381 3.32 0.00 0.00 2.74
75 76 1.340568 GGTCGTGGCCTCTTATCCTAC 59.659 57.143 3.32 0.00 0.00 3.18
76 77 1.700955 GGTCGTGGCCTCTTATCCTA 58.299 55.000 3.32 0.00 0.00 2.94
77 78 1.049289 GGGTCGTGGCCTCTTATCCT 61.049 60.000 3.32 0.00 0.00 3.24
78 79 1.049289 AGGGTCGTGGCCTCTTATCC 61.049 60.000 3.32 0.86 0.00 2.59
79 80 0.105039 CAGGGTCGTGGCCTCTTATC 59.895 60.000 3.32 0.00 0.00 1.75
80 81 1.338136 CCAGGGTCGTGGCCTCTTAT 61.338 60.000 3.32 0.00 0.00 1.73
81 82 1.987855 CCAGGGTCGTGGCCTCTTA 60.988 63.158 3.32 0.00 0.00 2.10
82 83 3.322466 CCAGGGTCGTGGCCTCTT 61.322 66.667 3.32 0.00 0.00 2.85
85 86 4.326227 TACCCAGGGTCGTGGCCT 62.326 66.667 17.08 0.00 37.09 5.19
86 87 3.782443 CTACCCAGGGTCGTGGCC 61.782 72.222 17.08 0.00 37.09 5.36
87 88 2.682494 TCTACCCAGGGTCGTGGC 60.682 66.667 17.08 0.00 37.09 5.01
88 89 2.058595 CCTCTACCCAGGGTCGTGG 61.059 68.421 17.08 15.91 37.09 4.94
89 90 0.397254 ATCCTCTACCCAGGGTCGTG 60.397 60.000 17.08 10.04 37.09 4.35
90 91 0.397254 CATCCTCTACCCAGGGTCGT 60.397 60.000 17.08 0.00 37.09 4.34
91 92 0.106167 TCATCCTCTACCCAGGGTCG 60.106 60.000 17.08 9.64 37.09 4.79
92 93 1.218196 TCTCATCCTCTACCCAGGGTC 59.782 57.143 17.08 0.00 37.09 4.46
93 94 1.319947 TCTCATCCTCTACCCAGGGT 58.680 55.000 17.82 17.82 40.16 4.34
94 95 2.255406 CATCTCATCCTCTACCCAGGG 58.745 57.143 2.85 2.85 33.81 4.45
95 96 2.158249 TCCATCTCATCCTCTACCCAGG 60.158 54.545 0.00 0.00 34.40 4.45
96 97 2.896685 GTCCATCTCATCCTCTACCCAG 59.103 54.545 0.00 0.00 0.00 4.45
97 98 2.753168 CGTCCATCTCATCCTCTACCCA 60.753 54.545 0.00 0.00 0.00 4.51
98 99 1.889829 CGTCCATCTCATCCTCTACCC 59.110 57.143 0.00 0.00 0.00 3.69
99 100 2.817258 CTCGTCCATCTCATCCTCTACC 59.183 54.545 0.00 0.00 0.00 3.18
100 101 3.745799 TCTCGTCCATCTCATCCTCTAC 58.254 50.000 0.00 0.00 0.00 2.59
101 102 3.244735 CCTCTCGTCCATCTCATCCTCTA 60.245 52.174 0.00 0.00 0.00 2.43
102 103 2.488891 CCTCTCGTCCATCTCATCCTCT 60.489 54.545 0.00 0.00 0.00 3.69
103 104 1.885887 CCTCTCGTCCATCTCATCCTC 59.114 57.143 0.00 0.00 0.00 3.71
104 105 1.496857 TCCTCTCGTCCATCTCATCCT 59.503 52.381 0.00 0.00 0.00 3.24
105 106 1.885887 CTCCTCTCGTCCATCTCATCC 59.114 57.143 0.00 0.00 0.00 3.51
106 107 1.885887 CCTCCTCTCGTCCATCTCATC 59.114 57.143 0.00 0.00 0.00 2.92
107 108 1.496857 TCCTCCTCTCGTCCATCTCAT 59.503 52.381 0.00 0.00 0.00 2.90
108 109 0.919710 TCCTCCTCTCGTCCATCTCA 59.080 55.000 0.00 0.00 0.00 3.27
109 110 1.953686 CTTCCTCCTCTCGTCCATCTC 59.046 57.143 0.00 0.00 0.00 2.75
110 111 1.566703 TCTTCCTCCTCTCGTCCATCT 59.433 52.381 0.00 0.00 0.00 2.90
111 112 2.060050 TCTTCCTCCTCTCGTCCATC 57.940 55.000 0.00 0.00 0.00 3.51
112 113 2.024846 TCTTCTTCCTCCTCTCGTCCAT 60.025 50.000 0.00 0.00 0.00 3.41
113 114 1.354705 TCTTCTTCCTCCTCTCGTCCA 59.645 52.381 0.00 0.00 0.00 4.02
114 115 2.131776 TCTTCTTCCTCCTCTCGTCC 57.868 55.000 0.00 0.00 0.00 4.79
115 116 3.256136 TGTTTCTTCTTCCTCCTCTCGTC 59.744 47.826 0.00 0.00 0.00 4.20
116 117 3.231818 TGTTTCTTCTTCCTCCTCTCGT 58.768 45.455 0.00 0.00 0.00 4.18
117 118 3.944055 TGTTTCTTCTTCCTCCTCTCG 57.056 47.619 0.00 0.00 0.00 4.04
118 119 5.182487 GGAATGTTTCTTCTTCCTCCTCTC 58.818 45.833 0.00 0.00 36.36 3.20
119 120 4.323104 CGGAATGTTTCTTCTTCCTCCTCT 60.323 45.833 0.00 0.00 36.99 3.69
120 121 3.935828 CGGAATGTTTCTTCTTCCTCCTC 59.064 47.826 0.00 0.00 36.99 3.71
121 122 3.307762 CCGGAATGTTTCTTCTTCCTCCT 60.308 47.826 0.00 0.00 36.99 3.69
122 123 3.010420 CCGGAATGTTTCTTCTTCCTCC 58.990 50.000 0.00 0.00 36.99 4.30
123 124 3.676093 ACCGGAATGTTTCTTCTTCCTC 58.324 45.455 9.46 0.00 36.99 3.71
124 125 3.676093 GACCGGAATGTTTCTTCTTCCT 58.324 45.455 9.46 0.00 36.99 3.36
125 126 2.415512 CGACCGGAATGTTTCTTCTTCC 59.584 50.000 9.46 0.00 36.01 3.46
126 127 3.064931 ACGACCGGAATGTTTCTTCTTC 58.935 45.455 9.46 0.00 0.00 2.87
127 128 3.121738 ACGACCGGAATGTTTCTTCTT 57.878 42.857 9.46 0.00 0.00 2.52
128 129 2.833631 ACGACCGGAATGTTTCTTCT 57.166 45.000 9.46 0.00 0.00 2.85
129 130 3.308866 CCATACGACCGGAATGTTTCTTC 59.691 47.826 9.46 0.00 0.00 2.87
130 131 3.055675 TCCATACGACCGGAATGTTTCTT 60.056 43.478 9.46 0.00 0.00 2.52
131 132 2.498481 TCCATACGACCGGAATGTTTCT 59.502 45.455 9.46 0.00 0.00 2.52
132 133 2.864343 CTCCATACGACCGGAATGTTTC 59.136 50.000 9.46 0.00 0.00 2.78
133 134 2.498481 TCTCCATACGACCGGAATGTTT 59.502 45.455 9.46 0.00 0.00 2.83
134 135 2.100916 CTCTCCATACGACCGGAATGTT 59.899 50.000 9.46 0.00 0.00 2.71
135 136 1.681793 CTCTCCATACGACCGGAATGT 59.318 52.381 9.46 5.76 0.00 2.71
136 137 1.681793 ACTCTCCATACGACCGGAATG 59.318 52.381 9.46 6.16 0.00 2.67
137 138 2.068834 ACTCTCCATACGACCGGAAT 57.931 50.000 9.46 0.00 0.00 3.01
138 139 2.569059 CTACTCTCCATACGACCGGAA 58.431 52.381 9.46 0.00 0.00 4.30
139 140 1.813092 GCTACTCTCCATACGACCGGA 60.813 57.143 9.46 0.00 0.00 5.14
140 141 0.592148 GCTACTCTCCATACGACCGG 59.408 60.000 0.00 0.00 0.00 5.28
141 142 0.235144 CGCTACTCTCCATACGACCG 59.765 60.000 0.00 0.00 0.00 4.79
142 143 0.592148 CCGCTACTCTCCATACGACC 59.408 60.000 0.00 0.00 0.00 4.79
143 144 1.002684 CACCGCTACTCTCCATACGAC 60.003 57.143 0.00 0.00 0.00 4.34
144 145 1.306148 CACCGCTACTCTCCATACGA 58.694 55.000 0.00 0.00 0.00 3.43
145 146 0.311165 CCACCGCTACTCTCCATACG 59.689 60.000 0.00 0.00 0.00 3.06
146 147 1.688772 TCCACCGCTACTCTCCATAC 58.311 55.000 0.00 0.00 0.00 2.39
147 148 2.307768 CTTCCACCGCTACTCTCCATA 58.692 52.381 0.00 0.00 0.00 2.74
148 149 1.115467 CTTCCACCGCTACTCTCCAT 58.885 55.000 0.00 0.00 0.00 3.41
149 150 0.970937 CCTTCCACCGCTACTCTCCA 60.971 60.000 0.00 0.00 0.00 3.86
150 151 1.817209 CCTTCCACCGCTACTCTCC 59.183 63.158 0.00 0.00 0.00 3.71
151 152 1.142097 GCCTTCCACCGCTACTCTC 59.858 63.158 0.00 0.00 0.00 3.20
152 153 1.192146 TTGCCTTCCACCGCTACTCT 61.192 55.000 0.00 0.00 0.00 3.24
153 154 0.321298 TTTGCCTTCCACCGCTACTC 60.321 55.000 0.00 0.00 0.00 2.59
154 155 0.109723 TTTTGCCTTCCACCGCTACT 59.890 50.000 0.00 0.00 0.00 2.57
155 156 0.521735 CTTTTGCCTTCCACCGCTAC 59.478 55.000 0.00 0.00 0.00 3.58
156 157 0.398696 TCTTTTGCCTTCCACCGCTA 59.601 50.000 0.00 0.00 0.00 4.26
157 158 0.251341 ATCTTTTGCCTTCCACCGCT 60.251 50.000 0.00 0.00 0.00 5.52
158 159 0.109132 CATCTTTTGCCTTCCACCGC 60.109 55.000 0.00 0.00 0.00 5.68
159 160 1.533625 TCATCTTTTGCCTTCCACCG 58.466 50.000 0.00 0.00 0.00 4.94
160 161 3.157087 TCTTCATCTTTTGCCTTCCACC 58.843 45.455 0.00 0.00 0.00 4.61
161 162 3.192212 CCTCTTCATCTTTTGCCTTCCAC 59.808 47.826 0.00 0.00 0.00 4.02
162 163 3.424703 CCTCTTCATCTTTTGCCTTCCA 58.575 45.455 0.00 0.00 0.00 3.53
163 164 2.165234 GCCTCTTCATCTTTTGCCTTCC 59.835 50.000 0.00 0.00 0.00 3.46
164 165 2.165234 GGCCTCTTCATCTTTTGCCTTC 59.835 50.000 0.00 0.00 34.61 3.46
165 166 2.174360 GGCCTCTTCATCTTTTGCCTT 58.826 47.619 0.00 0.00 34.61 4.35
166 167 1.076024 TGGCCTCTTCATCTTTTGCCT 59.924 47.619 3.32 0.00 38.23 4.75
167 168 1.549203 TGGCCTCTTCATCTTTTGCC 58.451 50.000 3.32 0.00 37.90 4.52
168 169 2.756760 TCATGGCCTCTTCATCTTTTGC 59.243 45.455 3.32 0.00 0.00 3.68
169 170 3.181503 CGTCATGGCCTCTTCATCTTTTG 60.182 47.826 3.32 0.00 0.00 2.44
170 171 3.012518 CGTCATGGCCTCTTCATCTTTT 58.987 45.455 3.32 0.00 0.00 2.27
171 172 2.237143 TCGTCATGGCCTCTTCATCTTT 59.763 45.455 3.32 0.00 0.00 2.52
172 173 1.833630 TCGTCATGGCCTCTTCATCTT 59.166 47.619 3.32 0.00 0.00 2.40
173 174 1.489481 TCGTCATGGCCTCTTCATCT 58.511 50.000 3.32 0.00 0.00 2.90
174 175 2.315925 TTCGTCATGGCCTCTTCATC 57.684 50.000 3.32 0.00 0.00 2.92
175 176 2.787473 TTTCGTCATGGCCTCTTCAT 57.213 45.000 3.32 0.00 0.00 2.57
176 177 2.559698 TTTTCGTCATGGCCTCTTCA 57.440 45.000 3.32 0.00 0.00 3.02
177 178 2.414691 GCTTTTTCGTCATGGCCTCTTC 60.415 50.000 3.32 0.00 0.00 2.87
178 179 1.541588 GCTTTTTCGTCATGGCCTCTT 59.458 47.619 3.32 0.00 0.00 2.85
179 180 1.168714 GCTTTTTCGTCATGGCCTCT 58.831 50.000 3.32 0.00 0.00 3.69
180 181 0.179189 CGCTTTTTCGTCATGGCCTC 60.179 55.000 3.32 0.00 0.00 4.70
181 182 0.605319 TCGCTTTTTCGTCATGGCCT 60.605 50.000 3.32 0.00 0.00 5.19
182 183 0.451783 ATCGCTTTTTCGTCATGGCC 59.548 50.000 0.00 0.00 0.00 5.36
183 184 1.130373 TCATCGCTTTTTCGTCATGGC 59.870 47.619 0.00 0.00 0.00 4.40
184 185 2.789092 GCTCATCGCTTTTTCGTCATGG 60.789 50.000 0.00 0.00 35.14 3.66
185 186 2.434761 GCTCATCGCTTTTTCGTCATG 58.565 47.619 0.00 0.00 35.14 3.07
186 187 2.813779 GCTCATCGCTTTTTCGTCAT 57.186 45.000 0.00 0.00 35.14 3.06
197 198 0.794981 CGCCGTATCTAGCTCATCGC 60.795 60.000 0.00 0.00 39.57 4.58
198 199 0.179187 CCGCCGTATCTAGCTCATCG 60.179 60.000 0.00 0.00 0.00 3.84
199 200 0.882474 ACCGCCGTATCTAGCTCATC 59.118 55.000 0.00 0.00 0.00 2.92
200 201 0.598562 CACCGCCGTATCTAGCTCAT 59.401 55.000 0.00 0.00 0.00 2.90
201 202 1.452953 CCACCGCCGTATCTAGCTCA 61.453 60.000 0.00 0.00 0.00 4.26
202 203 1.286260 CCACCGCCGTATCTAGCTC 59.714 63.158 0.00 0.00 0.00 4.09
203 204 1.455217 ACCACCGCCGTATCTAGCT 60.455 57.895 0.00 0.00 0.00 3.32
204 205 1.299926 CACCACCGCCGTATCTAGC 60.300 63.158 0.00 0.00 0.00 3.42
205 206 0.742505 TTCACCACCGCCGTATCTAG 59.257 55.000 0.00 0.00 0.00 2.43
206 207 1.184431 TTTCACCACCGCCGTATCTA 58.816 50.000 0.00 0.00 0.00 1.98
207 208 0.322322 TTTTCACCACCGCCGTATCT 59.678 50.000 0.00 0.00 0.00 1.98
208 209 1.129811 CTTTTTCACCACCGCCGTATC 59.870 52.381 0.00 0.00 0.00 2.24
209 210 1.161843 CTTTTTCACCACCGCCGTAT 58.838 50.000 0.00 0.00 0.00 3.06
210 211 0.885596 CCTTTTTCACCACCGCCGTA 60.886 55.000 0.00 0.00 0.00 4.02
211 212 2.190841 CCTTTTTCACCACCGCCGT 61.191 57.895 0.00 0.00 0.00 5.68
212 213 2.190841 ACCTTTTTCACCACCGCCG 61.191 57.895 0.00 0.00 0.00 6.46
213 214 1.104577 TCACCTTTTTCACCACCGCC 61.105 55.000 0.00 0.00 0.00 6.13
214 215 0.741915 TTCACCTTTTTCACCACCGC 59.258 50.000 0.00 0.00 0.00 5.68
215 216 3.726291 ATTTCACCTTTTTCACCACCG 57.274 42.857 0.00 0.00 0.00 4.94
216 217 7.817478 CCTATAAATTTCACCTTTTTCACCACC 59.183 37.037 0.00 0.00 0.00 4.61
217 218 8.364894 ACCTATAAATTTCACCTTTTTCACCAC 58.635 33.333 0.00 0.00 0.00 4.16
218 219 8.485578 ACCTATAAATTTCACCTTTTTCACCA 57.514 30.769 0.00 0.00 0.00 4.17
222 223 9.582431 GCCTTACCTATAAATTTCACCTTTTTC 57.418 33.333 0.00 0.00 0.00 2.29
223 224 9.321532 AGCCTTACCTATAAATTTCACCTTTTT 57.678 29.630 0.00 0.00 0.00 1.94
224 225 8.895141 AGCCTTACCTATAAATTTCACCTTTT 57.105 30.769 0.00 0.00 0.00 2.27
225 226 8.895141 AAGCCTTACCTATAAATTTCACCTTT 57.105 30.769 0.00 0.00 0.00 3.11
226 227 9.628500 CTAAGCCTTACCTATAAATTTCACCTT 57.372 33.333 0.00 0.00 0.00 3.50
227 228 8.779031 ACTAAGCCTTACCTATAAATTTCACCT 58.221 33.333 0.00 0.00 0.00 4.00
228 229 8.975663 ACTAAGCCTTACCTATAAATTTCACC 57.024 34.615 0.00 0.00 0.00 4.02
229 230 8.762426 CGACTAAGCCTTACCTATAAATTTCAC 58.238 37.037 0.00 0.00 0.00 3.18
230 231 7.440255 GCGACTAAGCCTTACCTATAAATTTCA 59.560 37.037 0.00 0.00 0.00 2.69
231 232 7.794880 GCGACTAAGCCTTACCTATAAATTTC 58.205 38.462 0.00 0.00 0.00 2.17
232 233 7.725818 GCGACTAAGCCTTACCTATAAATTT 57.274 36.000 0.00 0.00 0.00 1.82
247 248 0.468648 ATGGGGTAAGGCGACTAAGC 59.531 55.000 0.00 0.00 42.68 3.09
248 249 1.760613 TGATGGGGTAAGGCGACTAAG 59.239 52.381 0.00 0.00 42.68 2.18
249 250 1.483415 GTGATGGGGTAAGGCGACTAA 59.517 52.381 0.00 0.00 42.68 2.24
250 251 1.117150 GTGATGGGGTAAGGCGACTA 58.883 55.000 0.00 0.00 42.68 2.59
252 253 0.180406 ATGTGATGGGGTAAGGCGAC 59.820 55.000 0.00 0.00 0.00 5.19
253 254 0.916086 AATGTGATGGGGTAAGGCGA 59.084 50.000 0.00 0.00 0.00 5.54
254 255 1.762708 AAATGTGATGGGGTAAGGCG 58.237 50.000 0.00 0.00 0.00 5.52
255 256 4.020543 TGTTAAATGTGATGGGGTAAGGC 58.979 43.478 0.00 0.00 0.00 4.35
256 257 6.435904 TCTTTGTTAAATGTGATGGGGTAAGG 59.564 38.462 0.00 0.00 0.00 2.69
257 258 7.393234 TCTCTTTGTTAAATGTGATGGGGTAAG 59.607 37.037 0.00 0.00 0.00 2.34
258 259 7.235079 TCTCTTTGTTAAATGTGATGGGGTAA 58.765 34.615 0.00 0.00 0.00 2.85
259 260 6.785076 TCTCTTTGTTAAATGTGATGGGGTA 58.215 36.000 0.00 0.00 0.00 3.69
260 261 5.640147 TCTCTTTGTTAAATGTGATGGGGT 58.360 37.500 0.00 0.00 0.00 4.95
261 262 6.780457 ATCTCTTTGTTAAATGTGATGGGG 57.220 37.500 0.00 0.00 0.00 4.96
277 278 4.246712 TCCCTCGTGGTAGTATCTCTTT 57.753 45.455 2.33 0.00 34.77 2.52
298 299 2.427506 GCACTCCCAAGAACGAAAGAT 58.572 47.619 0.00 0.00 0.00 2.40
300 301 0.512952 CGCACTCCCAAGAACGAAAG 59.487 55.000 0.00 0.00 0.00 2.62
311 312 0.035739 TTTTACTGTCCCGCACTCCC 59.964 55.000 0.00 0.00 0.00 4.30
315 316 0.594602 GGGTTTTTACTGTCCCGCAC 59.405 55.000 0.00 0.00 0.00 5.34
316 317 0.183014 TGGGTTTTTACTGTCCCGCA 59.817 50.000 0.00 0.00 42.54 5.69
336 337 1.819208 CCGCTTTCGATCCCATGCA 60.819 57.895 0.00 0.00 38.10 3.96
337 338 3.025619 CCGCTTTCGATCCCATGC 58.974 61.111 0.00 0.00 38.10 4.06
338 339 1.819208 TGCCGCTTTCGATCCCATG 60.819 57.895 0.00 0.00 38.10 3.66
358 359 1.208052 GCAGTGGCTCAACTCCATAGA 59.792 52.381 0.00 0.00 35.81 1.98
394 395 7.227910 GGGAAAAGGAAGTGGTTTTATTTTTCC 59.772 37.037 14.01 14.01 35.46 3.13
401 402 4.874199 AGTGGGAAAAGGAAGTGGTTTTA 58.126 39.130 0.00 0.00 0.00 1.52
433 434 2.159282 TCTCCTCGGAAATTACTGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
465 466 3.885976 TGTGGGTGGACCTATCAAAAA 57.114 42.857 0.00 0.00 41.11 1.94
471 472 0.830648 CACGATGTGGGTGGACCTAT 59.169 55.000 0.00 0.00 41.11 2.57
476 477 0.536724 CTGATCACGATGTGGGTGGA 59.463 55.000 0.00 0.00 36.09 4.02
498 499 1.340889 GGTCAAAGTTGAAGGCATGCA 59.659 47.619 21.36 0.00 39.21 3.96
509 510 6.350194 GGAGTTCTTTCAAAGTGGTCAAAGTT 60.350 38.462 0.00 0.00 0.00 2.66
510 511 5.125578 GGAGTTCTTTCAAAGTGGTCAAAGT 59.874 40.000 0.00 0.00 0.00 2.66
523 524 1.537814 TAGCCCGCGGAGTTCTTTCA 61.538 55.000 30.73 0.11 0.00 2.69
524 525 0.806492 CTAGCCCGCGGAGTTCTTTC 60.806 60.000 30.73 4.65 0.00 2.62
540 541 1.151908 AGTAGCCCCCGAGAGCTAG 59.848 63.158 0.00 0.00 42.05 3.42
541 542 1.152735 CAGTAGCCCCCGAGAGCTA 60.153 63.158 0.00 0.00 40.56 3.32
542 543 2.305314 ATCAGTAGCCCCCGAGAGCT 62.305 60.000 0.00 0.00 43.20 4.09
545 546 1.457643 CCATCAGTAGCCCCCGAGA 60.458 63.158 0.00 0.00 0.00 4.04
546 547 1.048724 TTCCATCAGTAGCCCCCGAG 61.049 60.000 0.00 0.00 0.00 4.63
547 548 1.002403 TTCCATCAGTAGCCCCCGA 59.998 57.895 0.00 0.00 0.00 5.14
557 558 4.569943 CCCGGTATCTAATGTTCCATCAG 58.430 47.826 0.00 0.00 0.00 2.90
580 581 8.921670 GGGTGCAAAACTTAAACTTTATGTATG 58.078 33.333 0.00 5.33 0.00 2.39
581 582 8.866093 AGGGTGCAAAACTTAAACTTTATGTAT 58.134 29.630 0.00 0.00 0.00 2.29
582 583 8.240267 AGGGTGCAAAACTTAAACTTTATGTA 57.760 30.769 0.00 0.00 0.00 2.29
583 584 7.069455 AGAGGGTGCAAAACTTAAACTTTATGT 59.931 33.333 0.00 0.00 0.00 2.29
584 585 7.433680 AGAGGGTGCAAAACTTAAACTTTATG 58.566 34.615 0.00 0.00 0.00 1.90
585 586 7.286775 TGAGAGGGTGCAAAACTTAAACTTTAT 59.713 33.333 0.00 0.00 0.00 1.40
586 587 6.603997 TGAGAGGGTGCAAAACTTAAACTTTA 59.396 34.615 0.00 0.00 0.00 1.85
602 605 3.431486 GCCAACTTATCTCTGAGAGGGTG 60.431 52.174 13.50 13.14 0.00 4.61
603 606 2.769095 GCCAACTTATCTCTGAGAGGGT 59.231 50.000 13.50 8.49 0.00 4.34
611 614 7.615365 TGTATTTTTCCATGCCAACTTATCTCT 59.385 33.333 0.00 0.00 0.00 3.10
618 621 4.987912 CGTTTGTATTTTTCCATGCCAACT 59.012 37.500 0.00 0.00 0.00 3.16
629 632 5.163632 ACTCCGGTGTTTCGTTTGTATTTTT 60.164 36.000 2.61 0.00 0.00 1.94
640 643 0.319211 TAGTGCACTCCGGTGTTTCG 60.319 55.000 25.56 0.00 44.65 3.46
650 653 5.063060 CCATACTTTTTACCGTAGTGCACTC 59.937 44.000 25.56 14.02 0.00 3.51
652 655 4.692155 ACCATACTTTTTACCGTAGTGCAC 59.308 41.667 9.40 9.40 0.00 4.57
671 674 9.420118 TCCTGCATTTTGTATCTTTTATACCAT 57.580 29.630 0.00 0.00 0.00 3.55
715 718 1.117150 CCTCGGGGATCTTTTACGGA 58.883 55.000 0.00 0.00 33.58 4.69
719 722 1.129058 GCCTCCTCGGGGATCTTTTA 58.871 55.000 3.31 0.00 41.36 1.52
721 724 2.073101 GGCCTCCTCGGGGATCTTT 61.073 63.158 3.31 0.00 41.36 2.52
772 775 2.167900 GTGTACCGTCTGCTTAGGGATT 59.832 50.000 4.87 0.00 0.00 3.01
789 792 1.588674 CTTTCTGGCCAACACGTGTA 58.411 50.000 23.69 4.57 0.00 2.90
807 810 2.980233 GCGTTGCAAGACCAGCCT 60.980 61.111 0.00 0.00 0.00 4.58
821 824 2.341101 CCTAGTCGGTGGAGTGCGT 61.341 63.158 0.00 0.00 0.00 5.24
1031 1054 5.534654 CCATAACAGAAGGGAAAGTGTGAAA 59.465 40.000 0.00 0.00 0.00 2.69
1126 1150 4.072131 AGCTACGGTCATTGTTGTTGAAT 58.928 39.130 0.00 0.00 0.00 2.57
1157 1181 5.064452 GCTTCTCGTTCTTGTCATGATTGAT 59.936 40.000 0.00 0.00 33.56 2.57
1213 1237 1.208052 ACCTGTTGCATAGTCTCGCAT 59.792 47.619 0.00 0.00 38.10 4.73
1216 1240 4.433615 ACATTACCTGTTGCATAGTCTCG 58.566 43.478 0.00 0.00 32.90 4.04
1279 1303 6.317391 GGACCATTCAATTCCTCTCTTAACAG 59.683 42.308 0.00 0.00 0.00 3.16
1312 1336 1.691196 TGGCAAGTTTTGACCTCCTG 58.309 50.000 0.00 0.00 38.13 3.86
1371 1396 0.393537 GCCTTCCTCCATGACTGGTG 60.394 60.000 0.00 0.00 43.61 4.17
1374 1399 1.747709 CTTGCCTTCCTCCATGACTG 58.252 55.000 0.00 0.00 0.00 3.51
1399 1424 0.762418 TGTTCCCCACTGACATCGTT 59.238 50.000 0.00 0.00 0.00 3.85
1474 1499 3.071892 TGTCGGTCCAATACTTTCTGGTT 59.928 43.478 0.00 0.00 34.11 3.67
1475 1500 2.635915 TGTCGGTCCAATACTTTCTGGT 59.364 45.455 0.00 0.00 34.11 4.00
1538 1564 4.385825 AGTGCGAGTGTAGGAATTTGAAA 58.614 39.130 0.00 0.00 0.00 2.69
1539 1565 4.002906 AGTGCGAGTGTAGGAATTTGAA 57.997 40.909 0.00 0.00 0.00 2.69
1553 1579 8.607459 AGACAATTCTTCATAAATTAGTGCGAG 58.393 33.333 0.00 0.00 0.00 5.03
1631 1657 9.630098 AATGTGAAACTAAAGCACTGAATTATG 57.370 29.630 0.00 0.00 38.04 1.90
1640 1666 6.071616 TCCCCATAAATGTGAAACTAAAGCAC 60.072 38.462 0.00 0.00 38.04 4.40
1913 1985 4.810790 AGTGAGTGTACATGAGTAAGCAC 58.189 43.478 0.00 1.09 31.08 4.40
2113 2187 6.374333 AGCTTGTACCTAATAAACATGGTGTG 59.626 38.462 0.00 0.00 34.33 3.82
2115 2189 7.012044 GGTAGCTTGTACCTAATAAACATGGTG 59.988 40.741 0.00 0.00 34.82 4.17
2223 2299 2.039418 CCATAGACACCCAATCCTCGA 58.961 52.381 0.00 0.00 0.00 4.04
2412 2488 5.027460 TGGTAGGCACTAGAGTTATTTCCA 58.973 41.667 0.00 0.00 44.14 3.53
2531 2607 9.753674 TTTGTCCTTGAGAATGGTAAATAGAAT 57.246 29.630 0.00 0.00 0.00 2.40
2616 2692 8.958119 AAATAGTAACACACAATATGGTCGAT 57.042 30.769 0.00 0.00 0.00 3.59
2677 2756 7.189693 ACACGCATATTTGTATTGATACCAG 57.810 36.000 0.00 0.00 32.33 4.00
2725 2804 9.884636 TCAATGCATGTAGTAAGTAGTTAACAT 57.115 29.630 8.61 2.92 0.00 2.71
2807 2899 7.662604 AGGATGCTTCAAATGTGAAAAATTC 57.337 32.000 0.00 0.00 43.18 2.17
3018 3114 3.893753 TCTAGAGGAGGGGAAGATGAG 57.106 52.381 0.00 0.00 0.00 2.90
3059 3155 3.356290 GGCAAGGAGAAAAGCCATAGAA 58.644 45.455 0.00 0.00 46.26 2.10
3086 3183 0.391661 CGAGCCTTTAGAGCTGCCAA 60.392 55.000 0.00 0.00 41.75 4.52
3103 3200 0.106469 CCACCTCATCCTCCTCTCGA 60.106 60.000 0.00 0.00 0.00 4.04
3167 3264 7.289310 AGATTGGAATTGGATTTGGTTTGTTT 58.711 30.769 0.00 0.00 0.00 2.83
3175 3272 5.664294 TGTGGAGATTGGAATTGGATTTG 57.336 39.130 0.00 0.00 0.00 2.32
3176 3273 6.126968 GGAATGTGGAGATTGGAATTGGATTT 60.127 38.462 0.00 0.00 0.00 2.17
3177 3274 5.364735 GGAATGTGGAGATTGGAATTGGATT 59.635 40.000 0.00 0.00 0.00 3.01
3178 3275 4.897670 GGAATGTGGAGATTGGAATTGGAT 59.102 41.667 0.00 0.00 0.00 3.41
3179 3276 4.017222 AGGAATGTGGAGATTGGAATTGGA 60.017 41.667 0.00 0.00 0.00 3.53
3180 3277 4.284178 AGGAATGTGGAGATTGGAATTGG 58.716 43.478 0.00 0.00 0.00 3.16
3250 3347 4.712122 TCAAAACCAAGTTCCACTTCAC 57.288 40.909 0.00 0.00 36.03 3.18
3269 3366 8.579006 AGAACAATGTATTGCAAAGAGAAATCA 58.421 29.630 1.71 0.00 41.38 2.57
3353 3450 3.005472 CGGTTTCTCTCTCAACTACCACA 59.995 47.826 0.00 0.00 0.00 4.17
3354 3451 3.576648 CGGTTTCTCTCTCAACTACCAC 58.423 50.000 0.00 0.00 0.00 4.16
3382 3479 3.426917 GTGGATCCACCCCCATGT 58.573 61.111 31.37 0.00 40.79 3.21
3426 3524 9.177608 CCTTCTATTGTGTTGGAGATATTTTCA 57.822 33.333 0.00 0.00 0.00 2.69
3445 3543 7.291182 AGCATCCTATTGACTACAACCTTCTAT 59.709 37.037 0.00 0.00 38.90 1.98
3473 3571 2.511218 ACCAGAAGGCATATGTGGATGT 59.489 45.455 14.46 0.00 39.06 3.06
3492 3590 8.846943 AACTTGATCCATTTTCCATTTTTACC 57.153 30.769 0.00 0.00 0.00 2.85
3509 3607 5.519927 CCAGTTGACCAAAACAAACTTGATC 59.480 40.000 0.00 0.00 32.21 2.92
3541 3639 4.082787 GGCCGATAATGTGTTTATGATGGG 60.083 45.833 0.00 0.00 30.44 4.00
3547 3645 4.340666 TGCAATGGCCGATAATGTGTTTAT 59.659 37.500 0.00 0.00 40.13 1.40
3548 3646 3.696548 TGCAATGGCCGATAATGTGTTTA 59.303 39.130 0.00 0.00 40.13 2.01
3578 3676 8.037166 CGGTAACCAGACCTATTAGTAGTTTTT 58.963 37.037 0.00 0.00 37.34 1.94
3605 3703 1.544093 CGATGGGTGCCTAATCATGCT 60.544 52.381 0.00 0.00 0.00 3.79
3607 3705 2.549064 TCGATGGGTGCCTAATCATG 57.451 50.000 0.00 0.00 0.00 3.07
3609 3707 1.347707 GGATCGATGGGTGCCTAATCA 59.652 52.381 0.54 0.00 0.00 2.57
3610 3708 1.625818 AGGATCGATGGGTGCCTAATC 59.374 52.381 0.54 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.