Multiple sequence alignment - TraesCS7A01G188200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G188200 chr7A 100.000 3975 0 0 1 3975 144173194 144169220 0.000000e+00 7341.0
1 TraesCS7A01G188200 chr7A 84.812 902 109 16 2086 2976 152833545 152834429 0.000000e+00 881.0
2 TraesCS7A01G188200 chr7A 81.695 814 100 29 1227 2029 152832548 152833323 2.020000e-177 632.0
3 TraesCS7A01G188200 chr7D 91.382 1404 79 19 2051 3417 141561876 141563274 0.000000e+00 1884.0
4 TraesCS7A01G188200 chr7D 93.808 856 29 8 1198 2036 141560976 141561824 0.000000e+00 1266.0
5 TraesCS7A01G188200 chr7D 84.751 905 112 15 2086 2976 152219358 152220250 0.000000e+00 883.0
6 TraesCS7A01G188200 chr7D 82.090 804 93 26 1235 2029 152218437 152219198 1.200000e-179 640.0
7 TraesCS7A01G188200 chr7D 91.247 377 14 5 793 1156 141560600 141560970 2.760000e-136 496.0
8 TraesCS7A01G188200 chr7D 88.973 263 13 9 541 802 141560203 141560450 1.070000e-80 311.0
9 TraesCS7A01G188200 chr7D 84.694 196 22 5 2997 3187 141571987 141572179 5.240000e-44 189.0
10 TraesCS7A01G188200 chr7B 90.108 1395 68 36 697 2036 106860738 106859359 0.000000e+00 1748.0
11 TraesCS7A01G188200 chr7B 94.266 1151 43 12 2049 3193 106859316 106858183 0.000000e+00 1738.0
12 TraesCS7A01G188200 chr7B 84.292 904 117 16 2086 2976 114394810 114395701 0.000000e+00 859.0
13 TraesCS7A01G188200 chr7B 81.327 814 102 31 1227 2029 114393891 114394665 2.030000e-172 616.0
14 TraesCS7A01G188200 chr7B 83.005 659 101 8 2322 2970 498086225 498085568 1.590000e-163 586.0
15 TraesCS7A01G188200 chr7B 92.308 143 11 0 539 681 106860866 106860724 1.870000e-48 204.0
16 TraesCS7A01G188200 chr7B 98.000 50 1 0 1351 1400 90105482 90105531 1.970000e-13 87.9
17 TraesCS7A01G188200 chr2A 97.273 550 14 1 3426 3975 541796624 541797172 0.000000e+00 931.0
18 TraesCS7A01G188200 chr2A 89.433 653 63 4 2328 2977 713016598 713017247 0.000000e+00 819.0
19 TraesCS7A01G188200 chr2A 81.496 508 71 13 2415 2901 713204241 713203736 2.880000e-106 396.0
20 TraesCS7A01G188200 chr2A 92.237 219 17 0 1800 2018 713016240 713016458 1.070000e-80 311.0
21 TraesCS7A01G188200 chr2A 88.608 237 26 1 1244 1479 713015910 713016146 1.810000e-73 287.0
22 TraesCS7A01G188200 chr2A 87.755 147 15 2 2089 2232 713016455 713016601 6.830000e-38 169.0
23 TraesCS7A01G188200 chr5A 97.070 546 15 1 3430 3975 88565590 88565046 0.000000e+00 918.0
24 TraesCS7A01G188200 chr6A 96.892 547 16 1 3429 3975 553081169 553080624 0.000000e+00 915.0
25 TraesCS7A01G188200 chr2D 89.790 666 64 4 2328 2990 574656799 574657463 0.000000e+00 850.0
26 TraesCS7A01G188200 chr2D 87.338 308 37 2 2670 2976 574979053 574978747 6.320000e-93 351.0
27 TraesCS7A01G188200 chr2D 90.141 213 21 0 1807 2019 575162103 575161891 1.090000e-70 278.0
28 TraesCS7A01G188200 chr2D 86.076 237 32 1 1244 1479 574655782 574656018 1.830000e-63 254.0
29 TraesCS7A01G188200 chr2D 90.710 183 17 0 1837 2019 575174944 575174762 1.100000e-60 244.0
30 TraesCS7A01G188200 chr2D 89.796 147 12 2 2089 2232 575169060 575168914 6.780000e-43 185.0
31 TraesCS7A01G188200 chr2D 89.116 147 13 2 2089 2232 575161895 575161749 3.160000e-41 180.0
32 TraesCS7A01G188200 chr2D 88.435 147 14 1 2089 2232 574656656 574656802 1.470000e-39 174.0
33 TraesCS7A01G188200 chr2D 91.270 126 10 1 1894 2019 575169180 575169056 1.900000e-38 171.0
34 TraesCS7A01G188200 chr2D 91.667 120 10 0 1899 2018 574656540 574656659 2.460000e-37 167.0
35 TraesCS7A01G188200 chr2D 90.291 103 9 1 1797 1899 574656109 574656210 2.490000e-27 134.0
36 TraesCS7A01G188200 chr2B 89.640 666 65 4 2328 2990 690931108 690931772 0.000000e+00 845.0
37 TraesCS7A01G188200 chr2B 91.284 218 19 0 1801 2018 690930751 690930968 8.350000e-77 298.0
38 TraesCS7A01G188200 chr2B 88.186 237 27 1 1244 1479 690930420 690930656 8.410000e-72 281.0
39 TraesCS7A01G188200 chr2B 88.636 220 25 0 1800 2019 691050511 691050292 6.550000e-68 268.0
40 TraesCS7A01G188200 chr2B 89.796 147 12 1 2089 2232 691050296 691050150 6.780000e-43 185.0
41 TraesCS7A01G188200 chr5B 89.189 555 41 8 3429 3975 598567246 598566703 0.000000e+00 675.0
42 TraesCS7A01G188200 chr5B 89.189 555 39 11 3429 3975 598540867 598540326 0.000000e+00 673.0
43 TraesCS7A01G188200 chr5B 87.766 564 41 9 3429 3975 598588335 598587783 1.560000e-178 636.0
44 TraesCS7A01G188200 chr1B 86.585 574 41 14 3426 3975 25890102 25890663 5.680000e-168 601.0
45 TraesCS7A01G188200 chr4A 92.271 207 16 0 3426 3632 448820953 448821159 1.080000e-75 294.0
46 TraesCS7A01G188200 chr4A 91.379 174 15 0 3802 3975 448821158 448821331 5.130000e-59 239.0
47 TraesCS7A01G188200 chr4A 95.349 43 1 1 3305 3346 703329600 703329558 2.560000e-07 67.6
48 TraesCS7A01G188200 chr4A 95.349 43 1 1 3305 3346 703330082 703330040 2.560000e-07 67.6
49 TraesCS7A01G188200 chr1D 85.075 201 29 1 3431 3631 468838201 468838002 1.870000e-48 204.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G188200 chr7A 144169220 144173194 3974 True 7341.000000 7341 100.000000 1 3975 1 chr7A.!!$R1 3974
1 TraesCS7A01G188200 chr7A 152832548 152834429 1881 False 756.500000 881 83.253500 1227 2976 2 chr7A.!!$F1 1749
2 TraesCS7A01G188200 chr7D 141560203 141563274 3071 False 989.250000 1884 91.352500 541 3417 4 chr7D.!!$F2 2876
3 TraesCS7A01G188200 chr7D 152218437 152220250 1813 False 761.500000 883 83.420500 1235 2976 2 chr7D.!!$F3 1741
4 TraesCS7A01G188200 chr7B 106858183 106860866 2683 True 1230.000000 1748 92.227333 539 3193 3 chr7B.!!$R2 2654
5 TraesCS7A01G188200 chr7B 114393891 114395701 1810 False 737.500000 859 82.809500 1227 2976 2 chr7B.!!$F2 1749
6 TraesCS7A01G188200 chr7B 498085568 498086225 657 True 586.000000 586 83.005000 2322 2970 1 chr7B.!!$R1 648
7 TraesCS7A01G188200 chr2A 541796624 541797172 548 False 931.000000 931 97.273000 3426 3975 1 chr2A.!!$F1 549
8 TraesCS7A01G188200 chr2A 713015910 713017247 1337 False 396.500000 819 89.508250 1244 2977 4 chr2A.!!$F2 1733
9 TraesCS7A01G188200 chr2A 713203736 713204241 505 True 396.000000 396 81.496000 2415 2901 1 chr2A.!!$R1 486
10 TraesCS7A01G188200 chr5A 88565046 88565590 544 True 918.000000 918 97.070000 3430 3975 1 chr5A.!!$R1 545
11 TraesCS7A01G188200 chr6A 553080624 553081169 545 True 915.000000 915 96.892000 3429 3975 1 chr6A.!!$R1 546
12 TraesCS7A01G188200 chr2D 574655782 574657463 1681 False 315.800000 850 89.251800 1244 2990 5 chr2D.!!$F1 1746
13 TraesCS7A01G188200 chr2B 690930420 690931772 1352 False 474.666667 845 89.703333 1244 2990 3 chr2B.!!$F1 1746
14 TraesCS7A01G188200 chr5B 598566703 598567246 543 True 675.000000 675 89.189000 3429 3975 1 chr5B.!!$R2 546
15 TraesCS7A01G188200 chr5B 598540326 598540867 541 True 673.000000 673 89.189000 3429 3975 1 chr5B.!!$R1 546
16 TraesCS7A01G188200 chr5B 598587783 598588335 552 True 636.000000 636 87.766000 3429 3975 1 chr5B.!!$R3 546
17 TraesCS7A01G188200 chr1B 25890102 25890663 561 False 601.000000 601 86.585000 3426 3975 1 chr1B.!!$F1 549

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 431 0.029567 CAGACGAGACGATGTAGCCC 59.970 60.0 0.00 0.00 0.00 5.19 F
478 479 0.036732 TTCTCCGTTGAGCCAGCATT 59.963 50.0 0.00 0.00 38.58 3.56 F
966 1140 0.170116 GCATCGATCGCTAGCTAGCT 59.830 55.0 36.02 23.12 46.85 3.32 F
1701 1931 0.520827 CGCGTAAGTCAGACGACCTC 60.521 60.0 0.00 0.00 43.73 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1754 0.602638 AACATTGCCTGAACTCGCGA 60.603 50.0 9.26 9.26 0.0 5.87 R
1638 1862 1.046472 TACCCGATCGCAGTCCCAAT 61.046 55.0 10.32 0.00 0.0 3.16 R
2261 3043 1.904287 ATGGGTGCAAACGTGTATGT 58.096 45.0 0.00 0.00 0.0 2.29 R
3217 4042 0.110486 AGGCCCAGATTGTTTCGTGT 59.890 50.0 0.00 0.00 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.425143 AATGGACACATTCGATGGCT 57.575 45.000 0.00 0.00 43.67 4.75
31 32 1.671979 ATGGACACATTCGATGGCTG 58.328 50.000 0.00 0.00 32.00 4.85
32 33 0.324614 TGGACACATTCGATGGCTGT 59.675 50.000 0.00 0.00 33.60 4.40
33 34 1.271325 TGGACACATTCGATGGCTGTT 60.271 47.619 0.00 0.00 33.60 3.16
34 35 1.131126 GGACACATTCGATGGCTGTTG 59.869 52.381 0.00 0.00 33.60 3.33
35 36 2.076100 GACACATTCGATGGCTGTTGA 58.924 47.619 0.00 0.00 33.60 3.18
36 37 2.079158 ACACATTCGATGGCTGTTGAG 58.921 47.619 0.00 0.00 33.60 3.02
37 38 2.079158 CACATTCGATGGCTGTTGAGT 58.921 47.619 0.00 0.00 33.60 3.41
38 39 2.094894 CACATTCGATGGCTGTTGAGTC 59.905 50.000 0.00 0.00 33.60 3.36
39 40 1.667724 CATTCGATGGCTGTTGAGTCC 59.332 52.381 0.00 0.00 0.00 3.85
40 41 0.976641 TTCGATGGCTGTTGAGTCCT 59.023 50.000 0.00 0.00 0.00 3.85
41 42 0.976641 TCGATGGCTGTTGAGTCCTT 59.023 50.000 0.00 0.00 0.00 3.36
42 43 1.347707 TCGATGGCTGTTGAGTCCTTT 59.652 47.619 0.00 0.00 0.00 3.11
43 44 2.154462 CGATGGCTGTTGAGTCCTTTT 58.846 47.619 0.00 0.00 0.00 2.27
44 45 3.007506 TCGATGGCTGTTGAGTCCTTTTA 59.992 43.478 0.00 0.00 0.00 1.52
45 46 3.941483 CGATGGCTGTTGAGTCCTTTTAT 59.059 43.478 0.00 0.00 0.00 1.40
46 47 5.105106 TCGATGGCTGTTGAGTCCTTTTATA 60.105 40.000 0.00 0.00 0.00 0.98
47 48 5.760253 CGATGGCTGTTGAGTCCTTTTATAT 59.240 40.000 0.00 0.00 0.00 0.86
48 49 6.260936 CGATGGCTGTTGAGTCCTTTTATATT 59.739 38.462 0.00 0.00 0.00 1.28
49 50 6.757897 TGGCTGTTGAGTCCTTTTATATTG 57.242 37.500 0.00 0.00 0.00 1.90
50 51 6.480763 TGGCTGTTGAGTCCTTTTATATTGA 58.519 36.000 0.00 0.00 0.00 2.57
51 52 7.118723 TGGCTGTTGAGTCCTTTTATATTGAT 58.881 34.615 0.00 0.00 0.00 2.57
52 53 8.271458 TGGCTGTTGAGTCCTTTTATATTGATA 58.729 33.333 0.00 0.00 0.00 2.15
53 54 9.289782 GGCTGTTGAGTCCTTTTATATTGATAT 57.710 33.333 0.00 0.00 0.00 1.63
78 79 3.996614 CGGAACCCGGCTTTGATT 58.003 55.556 0.00 0.00 44.15 2.57
79 80 2.263153 CGGAACCCGGCTTTGATTT 58.737 52.632 0.00 0.00 44.15 2.17
80 81 0.109319 CGGAACCCGGCTTTGATTTG 60.109 55.000 0.00 0.00 44.15 2.32
81 82 0.966179 GGAACCCGGCTTTGATTTGT 59.034 50.000 0.00 0.00 0.00 2.83
82 83 1.336795 GGAACCCGGCTTTGATTTGTG 60.337 52.381 0.00 0.00 0.00 3.33
83 84 1.339929 GAACCCGGCTTTGATTTGTGT 59.660 47.619 0.00 0.00 0.00 3.72
84 85 0.673437 ACCCGGCTTTGATTTGTGTG 59.327 50.000 0.00 0.00 0.00 3.82
85 86 0.038343 CCCGGCTTTGATTTGTGTGG 60.038 55.000 0.00 0.00 0.00 4.17
86 87 0.667184 CCGGCTTTGATTTGTGTGGC 60.667 55.000 0.00 0.00 0.00 5.01
87 88 1.003262 CGGCTTTGATTTGTGTGGCG 61.003 55.000 0.00 0.00 37.17 5.69
88 89 0.031994 GGCTTTGATTTGTGTGGCGT 59.968 50.000 0.00 0.00 0.00 5.68
89 90 1.268352 GGCTTTGATTTGTGTGGCGTA 59.732 47.619 0.00 0.00 0.00 4.42
90 91 2.094752 GGCTTTGATTTGTGTGGCGTAT 60.095 45.455 0.00 0.00 0.00 3.06
91 92 3.574614 GCTTTGATTTGTGTGGCGTATT 58.425 40.909 0.00 0.00 0.00 1.89
92 93 3.987220 GCTTTGATTTGTGTGGCGTATTT 59.013 39.130 0.00 0.00 0.00 1.40
93 94 4.447389 GCTTTGATTTGTGTGGCGTATTTT 59.553 37.500 0.00 0.00 0.00 1.82
94 95 5.050431 GCTTTGATTTGTGTGGCGTATTTTT 60.050 36.000 0.00 0.00 0.00 1.94
119 120 7.582435 TCGATAGAGAGTGAATTTTGTTGAC 57.418 36.000 0.00 0.00 42.67 3.18
120 121 7.378966 TCGATAGAGAGTGAATTTTGTTGACT 58.621 34.615 0.00 0.00 42.67 3.41
121 122 7.542477 TCGATAGAGAGTGAATTTTGTTGACTC 59.458 37.037 0.00 0.00 42.67 3.36
122 123 5.914085 AGAGAGTGAATTTTGTTGACTCG 57.086 39.130 0.00 0.00 38.46 4.18
123 124 4.752101 AGAGAGTGAATTTTGTTGACTCGG 59.248 41.667 0.00 0.00 38.46 4.63
124 125 4.451900 AGAGTGAATTTTGTTGACTCGGT 58.548 39.130 0.00 0.00 38.46 4.69
125 126 5.607477 AGAGTGAATTTTGTTGACTCGGTA 58.393 37.500 0.00 0.00 38.46 4.02
126 127 6.231211 AGAGTGAATTTTGTTGACTCGGTAT 58.769 36.000 0.00 0.00 38.46 2.73
127 128 7.383687 AGAGTGAATTTTGTTGACTCGGTATA 58.616 34.615 0.00 0.00 38.46 1.47
128 129 7.876068 AGAGTGAATTTTGTTGACTCGGTATAA 59.124 33.333 0.00 0.00 38.46 0.98
129 130 8.561738 AGTGAATTTTGTTGACTCGGTATAAT 57.438 30.769 0.00 0.00 0.00 1.28
130 131 9.010029 AGTGAATTTTGTTGACTCGGTATAATT 57.990 29.630 0.00 0.00 0.00 1.40
154 155 9.627395 ATTAGAATACATACAGTCGATACAAGC 57.373 33.333 0.00 0.00 0.00 4.01
155 156 7.039313 AGAATACATACAGTCGATACAAGCA 57.961 36.000 0.00 0.00 0.00 3.91
156 157 6.918569 AGAATACATACAGTCGATACAAGCAC 59.081 38.462 0.00 0.00 0.00 4.40
157 158 4.450082 ACATACAGTCGATACAAGCACA 57.550 40.909 0.00 0.00 0.00 4.57
158 159 4.816392 ACATACAGTCGATACAAGCACAA 58.184 39.130 0.00 0.00 0.00 3.33
159 160 5.234752 ACATACAGTCGATACAAGCACAAA 58.765 37.500 0.00 0.00 0.00 2.83
160 161 5.120208 ACATACAGTCGATACAAGCACAAAC 59.880 40.000 0.00 0.00 0.00 2.93
161 162 2.475111 ACAGTCGATACAAGCACAAACG 59.525 45.455 0.00 0.00 0.00 3.60
162 163 1.459592 AGTCGATACAAGCACAAACGC 59.540 47.619 0.00 0.00 0.00 4.84
163 164 0.436913 TCGATACAAGCACAAACGCG 59.563 50.000 3.53 3.53 36.85 6.01
164 165 1.120147 CGATACAAGCACAAACGCGC 61.120 55.000 5.73 0.00 36.85 6.86
165 166 0.110419 GATACAAGCACAAACGCGCA 60.110 50.000 5.73 0.00 36.85 6.09
166 167 0.309302 ATACAAGCACAAACGCGCAA 59.691 45.000 5.73 0.00 36.85 4.85
167 168 0.590230 TACAAGCACAAACGCGCAAC 60.590 50.000 5.73 0.00 36.85 4.17
168 169 1.586042 CAAGCACAAACGCGCAACT 60.586 52.632 5.73 0.00 36.85 3.16
169 170 0.316607 CAAGCACAAACGCGCAACTA 60.317 50.000 5.73 0.00 36.85 2.24
170 171 0.378962 AAGCACAAACGCGCAACTAA 59.621 45.000 5.73 0.00 36.85 2.24
171 172 0.378962 AGCACAAACGCGCAACTAAA 59.621 45.000 5.73 0.00 36.85 1.85
172 173 1.001815 AGCACAAACGCGCAACTAAAT 60.002 42.857 5.73 0.00 36.85 1.40
173 174 2.224549 AGCACAAACGCGCAACTAAATA 59.775 40.909 5.73 0.00 36.85 1.40
174 175 3.119990 AGCACAAACGCGCAACTAAATAT 60.120 39.130 5.73 0.00 36.85 1.28
175 176 3.002149 GCACAAACGCGCAACTAAATATG 60.002 43.478 5.73 0.00 0.00 1.78
176 177 4.155449 CACAAACGCGCAACTAAATATGT 58.845 39.130 5.73 0.00 0.00 2.29
177 178 4.259734 CACAAACGCGCAACTAAATATGTC 59.740 41.667 5.73 0.00 0.00 3.06
178 179 2.990774 ACGCGCAACTAAATATGTCG 57.009 45.000 5.73 0.00 0.00 4.35
179 180 1.591158 ACGCGCAACTAAATATGTCGG 59.409 47.619 5.73 0.00 0.00 4.79
180 181 1.656429 CGCGCAACTAAATATGTCGGC 60.656 52.381 8.75 0.00 0.00 5.54
181 182 1.329292 GCGCAACTAAATATGTCGGCA 59.671 47.619 0.30 0.00 0.00 5.69
182 183 2.223157 GCGCAACTAAATATGTCGGCAA 60.223 45.455 0.30 0.00 0.00 4.52
183 184 3.729462 GCGCAACTAAATATGTCGGCAAA 60.729 43.478 0.30 0.00 0.00 3.68
184 185 4.597079 CGCAACTAAATATGTCGGCAAAT 58.403 39.130 0.00 0.00 0.00 2.32
185 186 5.743467 CGCAACTAAATATGTCGGCAAATA 58.257 37.500 0.00 0.00 0.00 1.40
186 187 5.845953 CGCAACTAAATATGTCGGCAAATAG 59.154 40.000 0.00 0.00 0.00 1.73
187 188 5.625311 GCAACTAAATATGTCGGCAAATAGC 59.375 40.000 0.00 0.00 44.65 2.97
199 200 3.287312 GCAAATAGCAAAGTCAGTGCA 57.713 42.857 0.00 0.00 44.74 4.57
200 201 3.240069 GCAAATAGCAAAGTCAGTGCAG 58.760 45.455 0.00 0.00 44.74 4.41
201 202 3.058016 GCAAATAGCAAAGTCAGTGCAGA 60.058 43.478 0.00 0.00 44.74 4.26
202 203 4.720090 CAAATAGCAAAGTCAGTGCAGAG 58.280 43.478 0.00 0.00 44.74 3.35
203 204 1.800805 TAGCAAAGTCAGTGCAGAGC 58.199 50.000 0.00 0.00 44.74 4.09
204 205 0.179037 AGCAAAGTCAGTGCAGAGCA 60.179 50.000 0.00 0.00 44.74 4.26
205 206 0.664761 GCAAAGTCAGTGCAGAGCAA 59.335 50.000 0.00 0.00 41.47 3.91
206 207 1.598924 GCAAAGTCAGTGCAGAGCAAC 60.599 52.381 0.00 0.00 41.47 4.17
207 208 1.672363 CAAAGTCAGTGCAGAGCAACA 59.328 47.619 0.00 0.00 41.47 3.33
208 209 2.267174 AAGTCAGTGCAGAGCAACAT 57.733 45.000 0.00 0.00 41.47 2.71
209 210 1.520494 AGTCAGTGCAGAGCAACATG 58.480 50.000 0.00 0.00 41.47 3.21
210 211 1.071228 AGTCAGTGCAGAGCAACATGA 59.929 47.619 0.00 0.00 41.47 3.07
211 212 1.463831 GTCAGTGCAGAGCAACATGAG 59.536 52.381 0.00 0.00 41.47 2.90
212 213 1.071228 TCAGTGCAGAGCAACATGAGT 59.929 47.619 0.00 0.00 41.47 3.41
213 214 1.197036 CAGTGCAGAGCAACATGAGTG 59.803 52.381 0.00 0.00 41.47 3.51
214 215 1.202734 AGTGCAGAGCAACATGAGTGT 60.203 47.619 0.00 0.00 41.47 3.55
215 216 1.069432 GTGCAGAGCAACATGAGTGTG 60.069 52.381 0.00 0.00 41.47 3.82
216 217 0.520404 GCAGAGCAACATGAGTGTGG 59.480 55.000 0.00 0.00 38.92 4.17
217 218 1.879372 GCAGAGCAACATGAGTGTGGA 60.879 52.381 0.00 0.00 38.92 4.02
218 219 2.708051 CAGAGCAACATGAGTGTGGAT 58.292 47.619 0.00 0.00 38.92 3.41
219 220 2.418976 CAGAGCAACATGAGTGTGGATG 59.581 50.000 0.00 0.00 38.92 3.51
220 221 1.131883 GAGCAACATGAGTGTGGATGC 59.868 52.381 0.00 0.00 38.92 3.91
221 222 0.883153 GCAACATGAGTGTGGATGCA 59.117 50.000 0.00 0.00 38.92 3.96
222 223 1.270274 GCAACATGAGTGTGGATGCAA 59.730 47.619 0.00 0.00 38.92 4.08
223 224 2.288334 GCAACATGAGTGTGGATGCAAA 60.288 45.455 0.00 0.00 38.92 3.68
224 225 3.615592 GCAACATGAGTGTGGATGCAAAT 60.616 43.478 0.00 0.00 38.92 2.32
225 226 4.562082 CAACATGAGTGTGGATGCAAATT 58.438 39.130 0.00 0.00 38.92 1.82
226 227 4.877378 ACATGAGTGTGGATGCAAATTT 57.123 36.364 0.00 0.00 37.14 1.82
227 228 5.217978 ACATGAGTGTGGATGCAAATTTT 57.782 34.783 0.00 0.00 37.14 1.82
228 229 5.613329 ACATGAGTGTGGATGCAAATTTTT 58.387 33.333 0.00 0.00 37.14 1.94
247 248 2.772568 TTTTGCATCGAACAGTGTGG 57.227 45.000 0.00 0.00 0.00 4.17
248 249 1.960417 TTTGCATCGAACAGTGTGGA 58.040 45.000 0.00 0.00 0.00 4.02
249 250 2.183478 TTGCATCGAACAGTGTGGAT 57.817 45.000 0.00 0.00 0.00 3.41
250 251 1.441738 TGCATCGAACAGTGTGGATG 58.558 50.000 23.51 23.51 39.35 3.51
252 253 1.441738 CATCGAACAGTGTGGATGCA 58.558 50.000 18.99 0.00 31.01 3.96
253 254 2.011947 CATCGAACAGTGTGGATGCAT 58.988 47.619 18.99 0.00 31.01 3.96
254 255 2.183478 TCGAACAGTGTGGATGCATT 57.817 45.000 0.00 0.00 0.00 3.56
255 256 2.503331 TCGAACAGTGTGGATGCATTT 58.497 42.857 0.00 0.00 0.00 2.32
256 257 2.226200 TCGAACAGTGTGGATGCATTTG 59.774 45.455 0.00 0.00 0.00 2.32
257 258 2.669113 CGAACAGTGTGGATGCATTTGG 60.669 50.000 0.00 0.00 0.00 3.28
258 259 2.291209 ACAGTGTGGATGCATTTGGA 57.709 45.000 0.00 0.00 0.00 3.53
259 260 2.165167 ACAGTGTGGATGCATTTGGAG 58.835 47.619 0.00 0.00 0.00 3.86
260 261 2.224843 ACAGTGTGGATGCATTTGGAGA 60.225 45.455 0.00 0.00 0.00 3.71
261 262 2.422479 CAGTGTGGATGCATTTGGAGAG 59.578 50.000 0.00 0.00 0.00 3.20
262 263 1.133790 GTGTGGATGCATTTGGAGAGC 59.866 52.381 0.00 0.00 0.00 4.09
263 264 0.379669 GTGGATGCATTTGGAGAGCG 59.620 55.000 0.00 0.00 0.00 5.03
264 265 1.358046 GGATGCATTTGGAGAGCGC 59.642 57.895 0.00 0.00 0.00 5.92
265 266 1.010350 GATGCATTTGGAGAGCGCG 60.010 57.895 0.00 0.00 0.00 6.86
266 267 1.709147 GATGCATTTGGAGAGCGCGT 61.709 55.000 8.43 0.00 0.00 6.01
267 268 1.985447 ATGCATTTGGAGAGCGCGTG 61.985 55.000 8.43 0.00 0.00 5.34
268 269 2.390599 GCATTTGGAGAGCGCGTGA 61.391 57.895 8.43 0.00 0.00 4.35
269 270 1.709147 GCATTTGGAGAGCGCGTGAT 61.709 55.000 8.43 0.00 0.00 3.06
270 271 0.729116 CATTTGGAGAGCGCGTGATT 59.271 50.000 8.43 0.00 0.00 2.57
271 272 1.933181 CATTTGGAGAGCGCGTGATTA 59.067 47.619 8.43 0.00 0.00 1.75
272 273 1.640428 TTTGGAGAGCGCGTGATTAG 58.360 50.000 8.43 0.00 0.00 1.73
273 274 0.806102 TTGGAGAGCGCGTGATTAGC 60.806 55.000 8.43 0.00 0.00 3.09
282 283 2.114037 CGTGATTAGCGACGCTACG 58.886 57.895 28.26 25.55 41.12 3.51
283 284 0.588233 CGTGATTAGCGACGCTACGT 60.588 55.000 28.26 19.61 41.12 3.57
284 285 1.332290 CGTGATTAGCGACGCTACGTA 60.332 52.381 28.26 15.21 41.12 3.57
285 286 2.032652 GTGATTAGCGACGCTACGTAC 58.967 52.381 28.26 21.02 41.12 3.67
286 287 1.665169 TGATTAGCGACGCTACGTACA 59.335 47.619 28.26 20.51 41.12 2.90
287 288 2.032652 GATTAGCGACGCTACGTACAC 58.967 52.381 28.26 12.31 41.12 2.90
288 289 0.096976 TTAGCGACGCTACGTACACC 59.903 55.000 28.26 0.00 41.12 4.16
289 290 1.018752 TAGCGACGCTACGTACACCA 61.019 55.000 25.04 1.94 41.37 4.17
290 291 1.442520 GCGACGCTACGTACACCAA 60.443 57.895 13.73 0.00 41.37 3.67
291 292 1.400990 GCGACGCTACGTACACCAAG 61.401 60.000 13.73 0.00 41.37 3.61
292 293 0.166597 CGACGCTACGTACACCAAGA 59.833 55.000 0.00 0.00 41.37 3.02
293 294 1.789410 CGACGCTACGTACACCAAGAG 60.789 57.143 0.00 0.00 41.37 2.85
294 295 1.198637 GACGCTACGTACACCAAGAGT 59.801 52.381 0.00 0.00 41.37 3.24
295 296 2.416547 GACGCTACGTACACCAAGAGTA 59.583 50.000 0.00 0.00 41.37 2.59
296 297 2.417933 ACGCTACGTACACCAAGAGTAG 59.582 50.000 0.00 0.00 38.73 2.57
297 298 2.417933 CGCTACGTACACCAAGAGTAGT 59.582 50.000 0.00 0.00 37.63 2.73
298 299 3.120060 CGCTACGTACACCAAGAGTAGTT 60.120 47.826 0.00 0.00 37.63 2.24
299 300 4.093408 CGCTACGTACACCAAGAGTAGTTA 59.907 45.833 0.00 0.00 37.63 2.24
300 301 5.390885 CGCTACGTACACCAAGAGTAGTTAA 60.391 44.000 0.00 0.00 37.63 2.01
301 302 6.558909 GCTACGTACACCAAGAGTAGTTAAT 58.441 40.000 0.00 0.00 37.63 1.40
302 303 7.031975 GCTACGTACACCAAGAGTAGTTAATT 58.968 38.462 0.00 0.00 37.63 1.40
303 304 7.008992 GCTACGTACACCAAGAGTAGTTAATTG 59.991 40.741 0.00 0.00 37.63 2.32
304 305 6.752168 ACGTACACCAAGAGTAGTTAATTGT 58.248 36.000 0.00 0.00 0.00 2.71
305 306 7.885297 ACGTACACCAAGAGTAGTTAATTGTA 58.115 34.615 0.00 0.00 0.00 2.41
306 307 8.359642 ACGTACACCAAGAGTAGTTAATTGTAA 58.640 33.333 0.00 0.00 0.00 2.41
307 308 9.362539 CGTACACCAAGAGTAGTTAATTGTAAT 57.637 33.333 0.00 0.00 0.00 1.89
321 322 9.938280 AGTTAATTGTAATAGTACTTGCTGTCA 57.062 29.630 0.00 0.00 0.00 3.58
323 324 6.910536 ATTGTAATAGTACTTGCTGTCAGC 57.089 37.500 18.32 18.32 42.82 4.26
324 325 4.755411 TGTAATAGTACTTGCTGTCAGCC 58.245 43.478 21.99 6.16 41.51 4.85
325 326 2.586258 ATAGTACTTGCTGTCAGCCG 57.414 50.000 21.99 14.89 41.51 5.52
326 327 0.530744 TAGTACTTGCTGTCAGCCGG 59.469 55.000 21.99 15.88 41.51 6.13
327 328 1.004918 GTACTTGCTGTCAGCCGGT 60.005 57.895 21.99 20.24 41.51 5.28
328 329 1.014564 GTACTTGCTGTCAGCCGGTC 61.015 60.000 21.99 10.36 41.51 4.79
329 330 1.185618 TACTTGCTGTCAGCCGGTCT 61.186 55.000 21.99 0.00 41.51 3.85
330 331 2.031012 TTGCTGTCAGCCGGTCTG 59.969 61.111 21.99 16.84 41.51 3.51
331 332 2.721971 CTTGCTGTCAGCCGGTCTGT 62.722 60.000 21.99 0.00 41.51 3.41
332 333 2.740055 GCTGTCAGCCGGTCTGTG 60.740 66.667 14.27 14.48 43.32 3.66
333 334 2.737180 CTGTCAGCCGGTCTGTGT 59.263 61.111 20.54 0.00 43.32 3.72
334 335 1.069765 CTGTCAGCCGGTCTGTGTT 59.930 57.895 20.54 0.00 43.32 3.32
335 336 0.946221 CTGTCAGCCGGTCTGTGTTC 60.946 60.000 20.54 12.53 43.32 3.18
336 337 1.069090 GTCAGCCGGTCTGTGTTCA 59.931 57.895 20.54 3.72 43.32 3.18
337 338 1.069090 TCAGCCGGTCTGTGTTCAC 59.931 57.895 20.54 0.00 43.32 3.18
338 339 1.227527 CAGCCGGTCTGTGTTCACA 60.228 57.895 15.27 5.52 38.02 3.58
339 340 0.603707 CAGCCGGTCTGTGTTCACAT 60.604 55.000 15.27 0.00 38.02 3.21
340 341 0.320771 AGCCGGTCTGTGTTCACATC 60.321 55.000 1.90 3.55 0.00 3.06
341 342 1.626654 GCCGGTCTGTGTTCACATCG 61.627 60.000 1.90 10.15 0.00 3.84
342 343 1.626654 CCGGTCTGTGTTCACATCGC 61.627 60.000 6.09 0.72 0.00 4.58
343 344 0.943835 CGGTCTGTGTTCACATCGCA 60.944 55.000 6.09 0.00 0.00 5.10
344 345 0.792640 GGTCTGTGTTCACATCGCAG 59.207 55.000 6.09 0.00 42.53 5.18
345 346 1.605457 GGTCTGTGTTCACATCGCAGA 60.605 52.381 6.09 5.29 45.88 4.26
346 347 1.783284 TCTGTGTTCACATCGCAGAC 58.217 50.000 6.09 0.00 44.12 3.51
347 348 1.068434 TCTGTGTTCACATCGCAGACA 59.932 47.619 6.09 0.00 44.12 3.41
348 349 1.458445 CTGTGTTCACATCGCAGACAG 59.542 52.381 6.09 0.00 42.51 3.51
349 350 0.164647 GTGTTCACATCGCAGACAGC 59.835 55.000 0.00 0.00 42.51 4.40
377 378 4.361253 TGGCGCAGTCAACTCTTC 57.639 55.556 10.83 0.00 42.02 2.87
378 379 1.301716 TGGCGCAGTCAACTCTTCC 60.302 57.895 10.83 0.00 42.02 3.46
379 380 1.004440 GGCGCAGTCAACTCTTCCT 60.004 57.895 10.83 0.00 0.00 3.36
380 381 1.016653 GGCGCAGTCAACTCTTCCTC 61.017 60.000 10.83 0.00 0.00 3.71
381 382 1.016653 GCGCAGTCAACTCTTCCTCC 61.017 60.000 0.30 0.00 0.00 4.30
382 383 0.605589 CGCAGTCAACTCTTCCTCCT 59.394 55.000 0.00 0.00 0.00 3.69
383 384 1.403514 CGCAGTCAACTCTTCCTCCTC 60.404 57.143 0.00 0.00 0.00 3.71
384 385 1.066502 GCAGTCAACTCTTCCTCCTCC 60.067 57.143 0.00 0.00 0.00 4.30
385 386 2.251818 CAGTCAACTCTTCCTCCTCCA 58.748 52.381 0.00 0.00 0.00 3.86
386 387 2.634940 CAGTCAACTCTTCCTCCTCCAA 59.365 50.000 0.00 0.00 0.00 3.53
387 388 2.903135 AGTCAACTCTTCCTCCTCCAAG 59.097 50.000 0.00 0.00 0.00 3.61
388 389 1.625818 TCAACTCTTCCTCCTCCAAGC 59.374 52.381 0.00 0.00 0.00 4.01
389 390 0.610687 AACTCTTCCTCCTCCAAGCG 59.389 55.000 0.00 0.00 0.00 4.68
390 391 1.261238 ACTCTTCCTCCTCCAAGCGG 61.261 60.000 0.00 0.00 0.00 5.52
391 392 1.229209 TCTTCCTCCTCCAAGCGGT 60.229 57.895 0.00 0.00 0.00 5.68
392 393 0.836400 TCTTCCTCCTCCAAGCGGTT 60.836 55.000 0.00 0.00 0.00 4.44
393 394 0.674895 CTTCCTCCTCCAAGCGGTTG 60.675 60.000 20.18 20.18 0.00 3.77
394 395 1.415672 TTCCTCCTCCAAGCGGTTGT 61.416 55.000 24.38 0.00 30.95 3.32
395 396 1.073199 CCTCCTCCAAGCGGTTGTT 59.927 57.895 24.38 0.00 30.95 2.83
396 397 0.955919 CCTCCTCCAAGCGGTTGTTC 60.956 60.000 24.38 0.00 30.95 3.18
397 398 0.250295 CTCCTCCAAGCGGTTGTTCA 60.250 55.000 24.38 8.40 30.95 3.18
398 399 0.400213 TCCTCCAAGCGGTTGTTCAT 59.600 50.000 24.38 0.00 30.95 2.57
399 400 0.523072 CCTCCAAGCGGTTGTTCATG 59.477 55.000 24.38 10.03 30.95 3.07
400 401 1.522668 CTCCAAGCGGTTGTTCATGA 58.477 50.000 24.38 13.54 30.95 3.07
401 402 1.466167 CTCCAAGCGGTTGTTCATGAG 59.534 52.381 24.38 18.40 30.95 2.90
402 403 0.109597 CCAAGCGGTTGTTCATGAGC 60.110 55.000 24.38 2.05 30.95 4.26
403 404 0.877071 CAAGCGGTTGTTCATGAGCT 59.123 50.000 18.96 5.12 36.40 4.09
404 405 2.076100 CAAGCGGTTGTTCATGAGCTA 58.924 47.619 18.96 0.00 34.24 3.32
405 406 2.472695 AGCGGTTGTTCATGAGCTAA 57.527 45.000 11.09 1.28 32.73 3.09
406 407 2.350522 AGCGGTTGTTCATGAGCTAAG 58.649 47.619 11.09 2.82 32.73 2.18
407 408 1.202076 GCGGTTGTTCATGAGCTAAGC 60.202 52.381 11.09 11.15 0.00 3.09
408 409 2.076100 CGGTTGTTCATGAGCTAAGCA 58.924 47.619 11.09 0.00 0.00 3.91
409 410 2.483877 CGGTTGTTCATGAGCTAAGCAA 59.516 45.455 11.09 1.86 0.00 3.91
410 411 3.425359 CGGTTGTTCATGAGCTAAGCAAG 60.425 47.826 11.09 0.00 0.00 4.01
421 422 1.263776 CTAAGCAAGCAGACGAGACG 58.736 55.000 0.00 0.00 0.00 4.18
422 423 0.879090 TAAGCAAGCAGACGAGACGA 59.121 50.000 0.00 0.00 0.00 4.20
423 424 0.244994 AAGCAAGCAGACGAGACGAT 59.755 50.000 0.00 0.00 0.00 3.73
424 425 0.457509 AGCAAGCAGACGAGACGATG 60.458 55.000 0.00 0.00 0.00 3.84
425 426 0.734253 GCAAGCAGACGAGACGATGT 60.734 55.000 0.00 0.00 0.00 3.06
426 427 1.467543 GCAAGCAGACGAGACGATGTA 60.468 52.381 0.00 0.00 0.00 2.29
427 428 2.445316 CAAGCAGACGAGACGATGTAG 58.555 52.381 0.00 0.00 0.00 2.74
428 429 0.378962 AGCAGACGAGACGATGTAGC 59.621 55.000 0.00 0.00 0.00 3.58
429 430 0.592754 GCAGACGAGACGATGTAGCC 60.593 60.000 0.00 0.00 0.00 3.93
430 431 0.029567 CAGACGAGACGATGTAGCCC 59.970 60.000 0.00 0.00 0.00 5.19
431 432 1.009900 GACGAGACGATGTAGCCCG 60.010 63.158 0.00 0.00 0.00 6.13
432 433 2.353607 CGAGACGATGTAGCCCGC 60.354 66.667 0.00 0.00 0.00 6.13
433 434 2.353607 GAGACGATGTAGCCCGCG 60.354 66.667 0.00 0.00 0.00 6.46
434 435 3.825833 GAGACGATGTAGCCCGCGG 62.826 68.421 21.04 21.04 0.00 6.46
435 436 3.896133 GACGATGTAGCCCGCGGA 61.896 66.667 30.73 6.25 0.00 5.54
436 437 4.203076 ACGATGTAGCCCGCGGAC 62.203 66.667 30.73 17.62 0.00 4.79
437 438 3.900892 CGATGTAGCCCGCGGACT 61.901 66.667 30.73 25.41 0.00 3.85
438 439 2.027751 GATGTAGCCCGCGGACTC 59.972 66.667 30.73 15.13 0.00 3.36
439 440 2.442272 ATGTAGCCCGCGGACTCT 60.442 61.111 30.73 21.91 0.00 3.24
440 441 2.685387 GATGTAGCCCGCGGACTCTG 62.685 65.000 30.73 10.90 0.00 3.35
441 442 3.450115 GTAGCCCGCGGACTCTGT 61.450 66.667 30.73 0.11 0.00 3.41
442 443 3.449227 TAGCCCGCGGACTCTGTG 61.449 66.667 30.73 9.14 0.00 3.66
443 444 3.931190 TAGCCCGCGGACTCTGTGA 62.931 63.158 30.73 0.33 0.00 3.58
444 445 4.148825 GCCCGCGGACTCTGTGAT 62.149 66.667 30.73 0.00 0.00 3.06
445 446 2.202797 CCCGCGGACTCTGTGATG 60.203 66.667 30.73 0.44 0.00 3.07
446 447 2.202797 CCGCGGACTCTGTGATGG 60.203 66.667 24.07 0.00 0.00 3.51
447 448 2.710902 CCGCGGACTCTGTGATGGA 61.711 63.158 24.07 0.00 0.00 3.41
448 449 1.226802 CGCGGACTCTGTGATGGAG 60.227 63.158 0.00 0.00 36.92 3.86
449 450 1.657751 CGCGGACTCTGTGATGGAGA 61.658 60.000 0.00 0.00 35.10 3.71
450 451 0.179124 GCGGACTCTGTGATGGAGAC 60.179 60.000 0.00 0.00 35.10 3.36
463 464 2.996249 TGGAGACATGGCATCTTCTC 57.004 50.000 20.44 20.44 34.83 2.87
464 465 2.252976 GGAGACATGGCATCTTCTCC 57.747 55.000 27.28 27.28 45.65 3.71
465 466 1.539929 GGAGACATGGCATCTTCTCCG 60.540 57.143 27.28 7.78 43.62 4.63
466 467 1.137872 GAGACATGGCATCTTCTCCGT 59.862 52.381 18.85 4.57 0.00 4.69
467 468 1.556911 AGACATGGCATCTTCTCCGTT 59.443 47.619 0.00 0.00 0.00 4.44
468 469 1.667724 GACATGGCATCTTCTCCGTTG 59.332 52.381 0.00 0.00 0.00 4.10
469 470 1.278985 ACATGGCATCTTCTCCGTTGA 59.721 47.619 0.00 0.00 0.00 3.18
470 471 1.938577 CATGGCATCTTCTCCGTTGAG 59.061 52.381 0.00 0.00 40.17 3.02
471 472 0.391661 TGGCATCTTCTCCGTTGAGC 60.392 55.000 0.00 0.00 38.58 4.26
472 473 1.092345 GGCATCTTCTCCGTTGAGCC 61.092 60.000 0.00 0.00 38.58 4.70
473 474 0.391661 GCATCTTCTCCGTTGAGCCA 60.392 55.000 0.00 0.00 38.58 4.75
474 475 1.649664 CATCTTCTCCGTTGAGCCAG 58.350 55.000 0.00 0.00 38.58 4.85
475 476 0.107945 ATCTTCTCCGTTGAGCCAGC 60.108 55.000 0.00 0.00 38.58 4.85
476 477 1.004560 CTTCTCCGTTGAGCCAGCA 60.005 57.895 0.00 0.00 38.58 4.41
477 478 0.392193 CTTCTCCGTTGAGCCAGCAT 60.392 55.000 0.00 0.00 38.58 3.79
478 479 0.036732 TTCTCCGTTGAGCCAGCATT 59.963 50.000 0.00 0.00 38.58 3.56
479 480 0.036732 TCTCCGTTGAGCCAGCATTT 59.963 50.000 0.00 0.00 38.58 2.32
480 481 0.883833 CTCCGTTGAGCCAGCATTTT 59.116 50.000 0.00 0.00 0.00 1.82
481 482 1.270550 CTCCGTTGAGCCAGCATTTTT 59.729 47.619 0.00 0.00 0.00 1.94
482 483 1.000385 TCCGTTGAGCCAGCATTTTTG 60.000 47.619 0.00 0.00 0.00 2.44
483 484 1.269726 CCGTTGAGCCAGCATTTTTGT 60.270 47.619 0.00 0.00 0.00 2.83
484 485 2.053627 CGTTGAGCCAGCATTTTTGTC 58.946 47.619 0.00 0.00 0.00 3.18
485 486 2.543445 CGTTGAGCCAGCATTTTTGTCA 60.543 45.455 0.00 0.00 0.00 3.58
486 487 3.456280 GTTGAGCCAGCATTTTTGTCAA 58.544 40.909 0.00 0.00 0.00 3.18
487 488 3.096489 TGAGCCAGCATTTTTGTCAAC 57.904 42.857 0.00 0.00 0.00 3.18
488 489 2.429971 TGAGCCAGCATTTTTGTCAACA 59.570 40.909 0.00 0.00 0.00 3.33
489 490 2.796593 GAGCCAGCATTTTTGTCAACAC 59.203 45.455 0.00 0.00 0.00 3.32
490 491 2.168106 AGCCAGCATTTTTGTCAACACA 59.832 40.909 0.00 0.00 0.00 3.72
491 492 3.132925 GCCAGCATTTTTGTCAACACAT 58.867 40.909 0.00 0.00 30.55 3.21
492 493 3.059461 GCCAGCATTTTTGTCAACACATG 60.059 43.478 0.00 0.00 30.55 3.21
493 494 4.370049 CCAGCATTTTTGTCAACACATGA 58.630 39.130 0.00 0.00 35.05 3.07
494 495 4.446385 CCAGCATTTTTGTCAACACATGAG 59.554 41.667 0.00 0.00 39.19 2.90
495 496 5.283294 CAGCATTTTTGTCAACACATGAGA 58.717 37.500 0.00 0.00 39.19 3.27
496 497 5.749588 CAGCATTTTTGTCAACACATGAGAA 59.250 36.000 0.00 0.00 39.36 2.87
497 498 5.750067 AGCATTTTTGTCAACACATGAGAAC 59.250 36.000 0.00 0.00 40.68 3.01
498 499 5.519566 GCATTTTTGTCAACACATGAGAACA 59.480 36.000 0.00 0.00 40.68 3.18
499 500 6.291955 GCATTTTTGTCAACACATGAGAACAG 60.292 38.462 0.00 0.00 40.68 3.16
500 501 5.895636 TTTTGTCAACACATGAGAACAGT 57.104 34.783 0.00 0.00 40.68 3.55
501 502 5.484173 TTTGTCAACACATGAGAACAGTC 57.516 39.130 0.00 0.00 40.68 3.51
502 503 4.135747 TGTCAACACATGAGAACAGTCA 57.864 40.909 0.00 0.00 39.19 3.41
503 504 4.122046 TGTCAACACATGAGAACAGTCAG 58.878 43.478 0.00 0.00 39.19 3.51
504 505 4.141959 TGTCAACACATGAGAACAGTCAGA 60.142 41.667 0.00 0.00 39.19 3.27
505 506 4.993584 GTCAACACATGAGAACAGTCAGAT 59.006 41.667 0.00 0.00 39.19 2.90
506 507 4.992951 TCAACACATGAGAACAGTCAGATG 59.007 41.667 0.00 0.00 33.04 2.90
507 508 3.332919 ACACATGAGAACAGTCAGATGC 58.667 45.455 0.00 0.00 0.00 3.91
508 509 3.244318 ACACATGAGAACAGTCAGATGCA 60.244 43.478 0.00 0.00 0.00 3.96
509 510 3.371285 CACATGAGAACAGTCAGATGCAG 59.629 47.826 0.00 0.00 0.00 4.41
510 511 3.007723 ACATGAGAACAGTCAGATGCAGT 59.992 43.478 0.00 0.00 0.00 4.40
511 512 3.758755 TGAGAACAGTCAGATGCAGTT 57.241 42.857 0.00 0.00 0.00 3.16
512 513 4.871933 TGAGAACAGTCAGATGCAGTTA 57.128 40.909 0.00 0.00 0.00 2.24
513 514 5.411831 TGAGAACAGTCAGATGCAGTTAT 57.588 39.130 0.00 0.00 0.00 1.89
514 515 5.414360 TGAGAACAGTCAGATGCAGTTATC 58.586 41.667 0.00 0.00 32.69 1.75
515 516 5.186603 TGAGAACAGTCAGATGCAGTTATCT 59.813 40.000 8.29 0.00 37.90 1.98
516 517 6.047511 AGAACAGTCAGATGCAGTTATCTT 57.952 37.500 0.00 0.00 35.28 2.40
517 518 6.471146 AGAACAGTCAGATGCAGTTATCTTT 58.529 36.000 0.00 0.00 35.28 2.52
518 519 6.939163 AGAACAGTCAGATGCAGTTATCTTTT 59.061 34.615 0.00 0.00 35.28 2.27
519 520 6.734104 ACAGTCAGATGCAGTTATCTTTTC 57.266 37.500 0.00 0.00 35.28 2.29
520 521 6.471146 ACAGTCAGATGCAGTTATCTTTTCT 58.529 36.000 0.00 0.00 35.28 2.52
521 522 7.615403 ACAGTCAGATGCAGTTATCTTTTCTA 58.385 34.615 0.00 0.00 35.28 2.10
522 523 8.263640 ACAGTCAGATGCAGTTATCTTTTCTAT 58.736 33.333 0.00 0.00 35.28 1.98
523 524 9.107177 CAGTCAGATGCAGTTATCTTTTCTATT 57.893 33.333 0.00 0.00 35.28 1.73
524 525 9.678260 AGTCAGATGCAGTTATCTTTTCTATTT 57.322 29.630 0.00 0.00 35.28 1.40
550 551 4.894784 TCACCCTTCGGATATAATCAAGC 58.105 43.478 0.00 0.00 0.00 4.01
584 585 8.504005 TCGTTCTGATCTTTTAAATCTGAAACC 58.496 33.333 9.73 1.87 40.49 3.27
641 642 3.063084 ACGGCTCAGAGACCCGAC 61.063 66.667 19.94 0.00 44.55 4.79
723 724 8.768019 ACTTAACAACTAGAATAACAACGGAAC 58.232 33.333 0.00 0.00 0.00 3.62
739 740 2.362736 GGAACTCCGGGATTAACCAAC 58.637 52.381 0.00 0.00 41.20 3.77
798 963 0.389817 TTGATCACGAGCAGGTTCCG 60.390 55.000 0.00 0.00 0.00 4.30
841 1006 1.078848 ACGGCTCCTGTGAATCTGC 60.079 57.895 0.00 0.00 0.00 4.26
909 1079 3.217626 GCCGATTCCATCCAAGAAGAAT 58.782 45.455 0.00 0.00 0.00 2.40
921 1091 8.678199 CCATCCAAGAAGAATTAAAGGAGTAAC 58.322 37.037 0.00 0.00 0.00 2.50
943 1117 1.818221 GCTGCGTTATAAGACCGCCG 61.818 60.000 14.17 10.11 46.44 6.46
964 1138 2.923353 CGCATCGATCGCTAGCTAG 58.077 57.895 16.84 16.84 0.00 3.42
965 1139 1.131037 CGCATCGATCGCTAGCTAGC 61.131 60.000 31.88 31.88 45.62 3.42
966 1140 0.170116 GCATCGATCGCTAGCTAGCT 59.830 55.000 36.02 23.12 46.85 3.32
967 1141 1.893759 CATCGATCGCTAGCTAGCTG 58.106 55.000 36.02 29.11 46.85 4.24
968 1142 1.198867 CATCGATCGCTAGCTAGCTGT 59.801 52.381 36.02 26.33 46.85 4.40
969 1143 1.309950 TCGATCGCTAGCTAGCTGTT 58.690 50.000 36.02 25.15 46.85 3.16
973 1147 1.226688 CGCTAGCTAGCTGTTCGCA 60.227 57.895 36.02 4.87 46.85 5.10
974 1148 1.475441 CGCTAGCTAGCTGTTCGCAC 61.475 60.000 36.02 10.94 46.85 5.34
975 1149 1.475441 GCTAGCTAGCTGTTCGCACG 61.475 60.000 33.71 6.19 45.62 5.34
976 1150 1.475441 CTAGCTAGCTGTTCGCACGC 61.475 60.000 27.68 0.00 42.61 5.34
977 1151 2.207788 TAGCTAGCTGTTCGCACGCA 62.208 55.000 27.68 0.00 42.61 5.24
978 1152 3.075998 CTAGCTGTTCGCACGCAG 58.924 61.111 0.00 0.00 42.61 5.18
994 1168 2.919856 AGAGCACCAGTCCAGCGT 60.920 61.111 0.00 0.00 0.00 5.07
997 1171 2.125512 GCACCAGTCCAGCGTAGG 60.126 66.667 0.00 0.00 0.00 3.18
1162 1348 1.994885 CTCCCTCCCTCTCTCGCTCT 61.995 65.000 0.00 0.00 0.00 4.09
1164 1350 1.528309 CCTCCCTCTCTCGCTCTCC 60.528 68.421 0.00 0.00 0.00 3.71
1167 1353 1.827789 CCCTCTCTCGCTCTCCCTG 60.828 68.421 0.00 0.00 0.00 4.45
1168 1354 1.225983 CCTCTCTCGCTCTCCCTGA 59.774 63.158 0.00 0.00 0.00 3.86
1171 1357 3.119709 CTCTCGCTCTCCCTGACGC 62.120 68.421 0.00 0.00 0.00 5.19
1211 1421 3.305608 GGGCAGACCAATCTTTGACTTTG 60.306 47.826 0.00 0.00 39.85 2.77
1369 1580 4.441695 CGCTCCTGCTCTTCGCCA 62.442 66.667 0.00 0.00 38.05 5.69
1484 1695 2.192187 GGTCCCTCCTAGGTACGCG 61.192 68.421 9.08 3.53 31.93 6.01
1530 1754 1.742831 TGAGCGCGCCATTAAATTCTT 59.257 42.857 30.33 3.57 0.00 2.52
1565 1789 6.869913 AGGCAATGTTTACATCATCTTGTTTG 59.130 34.615 0.00 0.00 35.10 2.93
1637 1861 3.763902 CCTCTGTCAGTACGTCAATCTG 58.236 50.000 0.00 0.00 0.00 2.90
1638 1862 3.440522 CCTCTGTCAGTACGTCAATCTGA 59.559 47.826 0.00 0.00 36.12 3.27
1701 1931 0.520827 CGCGTAAGTCAGACGACCTC 60.521 60.000 0.00 0.00 43.73 3.85
1733 1971 6.000840 TGCACTGTTAAGTCAATTCATGGTA 58.999 36.000 0.00 0.00 32.98 3.25
1734 1972 6.072728 TGCACTGTTAAGTCAATTCATGGTAC 60.073 38.462 0.00 0.00 32.98 3.34
1735 1973 6.149474 GCACTGTTAAGTCAATTCATGGTACT 59.851 38.462 0.00 0.00 32.98 2.73
1780 2018 5.649557 TGATCTCACTGTTTTGTGGTTTTG 58.350 37.500 0.00 0.00 38.40 2.44
2037 2775 4.226168 CAGGTAGGATCAAGAACCTTCCTT 59.774 45.833 17.92 5.46 46.78 3.36
2040 2778 2.578480 AGGATCAAGAACCTTCCTTCCC 59.422 50.000 0.00 0.00 34.98 3.97
2042 2780 2.951229 TCAAGAACCTTCCTTCCCAC 57.049 50.000 0.00 0.00 0.00 4.61
2043 2781 1.423921 TCAAGAACCTTCCTTCCCACC 59.576 52.381 0.00 0.00 0.00 4.61
2044 2782 1.144913 CAAGAACCTTCCTTCCCACCA 59.855 52.381 0.00 0.00 0.00 4.17
2045 2783 1.529744 AGAACCTTCCTTCCCACCAA 58.470 50.000 0.00 0.00 0.00 3.67
2046 2784 1.425448 AGAACCTTCCTTCCCACCAAG 59.575 52.381 0.00 0.00 0.00 3.61
2257 3039 4.763279 TGAATGTCACAAGATTCAGTGCAT 59.237 37.500 0.00 8.10 39.50 3.96
2258 3040 5.939296 TGAATGTCACAAGATTCAGTGCATA 59.061 36.000 0.00 3.22 39.50 3.14
2261 3043 8.510243 AATGTCACAAGATTCAGTGCATATTA 57.490 30.769 0.00 0.00 34.11 0.98
2262 3044 7.307493 TGTCACAAGATTCAGTGCATATTAC 57.693 36.000 0.00 0.00 35.76 1.89
2263 3045 6.878389 TGTCACAAGATTCAGTGCATATTACA 59.122 34.615 0.00 1.67 35.76 2.41
2264 3046 7.553760 TGTCACAAGATTCAGTGCATATTACAT 59.446 33.333 0.00 0.00 35.76 2.29
2318 3110 4.054780 TGGCGTCTATCTATGTGGAAAC 57.945 45.455 0.00 0.00 0.00 2.78
2347 3139 4.980805 GACACGGTGAAGGCGCCA 62.981 66.667 31.54 4.59 45.17 5.69
2846 3663 4.109050 GAGCAAGATGAAGAAGTACTCCG 58.891 47.826 0.00 0.00 0.00 4.63
3078 3896 5.921962 AGACTGTATCTGTGTGCTTGATA 57.078 39.130 0.00 0.00 35.81 2.15
3091 3909 9.282247 CTGTGTGCTTGATATTTTTAGATGAAC 57.718 33.333 0.00 0.00 0.00 3.18
3122 3940 3.913799 TCCAGTGGGAAATCTTTGGTAGA 59.086 43.478 9.92 0.00 41.32 2.59
3171 3992 2.107366 TGAGTCTCCGTTCCATGCATA 58.893 47.619 0.00 0.00 0.00 3.14
3190 4015 5.458779 TGCATAATCACGTCAAGAGATTACG 59.541 40.000 7.26 2.01 42.34 3.18
3193 4018 7.547961 CATAATCACGTCAAGAGATTACGTTC 58.452 38.462 7.26 0.00 46.86 3.95
3197 4022 2.921754 CGTCAAGAGATTACGTTCACCC 59.078 50.000 0.00 0.00 32.16 4.61
3202 4027 5.411361 TCAAGAGATTACGTTCACCCAAATG 59.589 40.000 0.00 0.00 0.00 2.32
3209 4034 8.405531 AGATTACGTTCACCCAAATGATAAATG 58.594 33.333 0.00 0.00 0.00 2.32
3217 4042 5.007034 ACCCAAATGATAAATGTCACACGA 58.993 37.500 0.00 0.00 0.00 4.35
3230 4059 2.538449 GTCACACGACACGAAACAATCT 59.462 45.455 0.00 0.00 42.13 2.40
3233 4062 1.194547 CACGACACGAAACAATCTGGG 59.805 52.381 0.00 0.00 0.00 4.45
3235 4064 0.521735 GACACGAAACAATCTGGGCC 59.478 55.000 0.00 0.00 0.00 5.80
3236 4065 0.110486 ACACGAAACAATCTGGGCCT 59.890 50.000 4.53 0.00 0.00 5.19
3237 4066 0.523072 CACGAAACAATCTGGGCCTG 59.477 55.000 4.53 4.06 0.00 4.85
3240 4069 2.238646 ACGAAACAATCTGGGCCTGATA 59.761 45.455 24.09 0.05 0.00 2.15
3245 4074 6.625532 AAACAATCTGGGCCTGATATTTTT 57.374 33.333 24.09 18.87 0.00 1.94
3299 4145 8.815912 ACTAAAACTTGCCATCCAGAAATAAAT 58.184 29.630 0.00 0.00 0.00 1.40
3304 4150 7.099120 ACTTGCCATCCAGAAATAAATTTGTC 58.901 34.615 0.00 0.00 0.00 3.18
3311 4157 8.600625 CATCCAGAAATAAATTTGTCATGCTTG 58.399 33.333 0.00 0.00 0.00 4.01
3338 4184 6.715280 ACTAAAGTTGTCATCCTCACATCAT 58.285 36.000 0.00 0.00 0.00 2.45
3343 4189 7.383102 AGTTGTCATCCTCACATCATTAAAC 57.617 36.000 0.00 0.00 0.00 2.01
3347 4193 8.492673 TGTCATCCTCACATCATTAAACTTAC 57.507 34.615 0.00 0.00 0.00 2.34
3361 4209 9.562583 TCATTAAACTTACCATAAAAACATCGC 57.437 29.630 0.00 0.00 0.00 4.58
3368 4216 3.932089 ACCATAAAAACATCGCAATTGCC 59.068 39.130 24.24 7.29 37.91 4.52
3370 4218 4.201705 CCATAAAAACATCGCAATTGCCAC 60.202 41.667 24.24 0.00 37.91 5.01
3372 4220 0.388391 AAACATCGCAATTGCCACGG 60.388 50.000 24.24 13.57 37.91 4.94
3391 4242 1.534729 GGTGGCAGGTCCTACTTTTG 58.465 55.000 0.00 0.00 35.26 2.44
3396 4247 2.354805 GGCAGGTCCTACTTTTGATCGT 60.355 50.000 0.00 0.00 0.00 3.73
3398 4249 2.673368 CAGGTCCTACTTTTGATCGTGC 59.327 50.000 0.00 0.00 0.00 5.34
3417 4268 4.119862 GTGCGCAAGAATATTCCTACTCA 58.880 43.478 14.00 3.00 43.02 3.41
3418 4269 4.025647 GTGCGCAAGAATATTCCTACTCAC 60.026 45.833 14.00 10.83 43.02 3.51
3419 4270 4.141937 TGCGCAAGAATATTCCTACTCACT 60.142 41.667 8.16 0.00 43.02 3.41
3420 4271 4.446051 GCGCAAGAATATTCCTACTCACTC 59.554 45.833 11.92 0.00 43.02 3.51
3421 4272 5.592054 CGCAAGAATATTCCTACTCACTCA 58.408 41.667 11.92 0.00 43.02 3.41
3422 4273 5.460419 CGCAAGAATATTCCTACTCACTCAC 59.540 44.000 11.92 0.00 43.02 3.51
3423 4274 5.755861 GCAAGAATATTCCTACTCACTCACC 59.244 44.000 11.92 0.00 0.00 4.02
3424 4275 6.284459 CAAGAATATTCCTACTCACTCACCC 58.716 44.000 11.92 0.00 0.00 4.61
3427 4278 2.297698 TTCCTACTCACTCACCCGAA 57.702 50.000 0.00 0.00 0.00 4.30
3695 4555 5.612725 TTTGAAAAGAAAAGCCAGGTCAT 57.387 34.783 0.00 0.00 0.00 3.06
3698 4558 2.299326 AAGAAAAGCCAGGTCATGCT 57.701 45.000 0.00 0.00 40.17 3.79
3735 4595 0.459489 GCTGTAGCAGGTCTCCTCTG 59.541 60.000 0.00 0.00 41.59 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.019249 CAGCCATCGAATGTGTCCATT 58.981 47.619 0.00 0.00 43.97 3.16
12 13 1.065199 ACAGCCATCGAATGTGTCCAT 60.065 47.619 0.00 0.00 0.00 3.41
13 14 0.324614 ACAGCCATCGAATGTGTCCA 59.675 50.000 0.00 0.00 0.00 4.02
14 15 1.131126 CAACAGCCATCGAATGTGTCC 59.869 52.381 0.00 0.00 0.00 4.02
15 16 2.076100 TCAACAGCCATCGAATGTGTC 58.924 47.619 0.00 0.00 0.00 3.67
16 17 2.079158 CTCAACAGCCATCGAATGTGT 58.921 47.619 0.00 0.00 0.00 3.72
17 18 2.079158 ACTCAACAGCCATCGAATGTG 58.921 47.619 0.00 0.00 0.00 3.21
18 19 2.350522 GACTCAACAGCCATCGAATGT 58.649 47.619 0.00 0.00 0.00 2.71
19 20 1.667724 GGACTCAACAGCCATCGAATG 59.332 52.381 0.00 0.00 0.00 2.67
20 21 1.556911 AGGACTCAACAGCCATCGAAT 59.443 47.619 0.00 0.00 0.00 3.34
21 22 0.976641 AGGACTCAACAGCCATCGAA 59.023 50.000 0.00 0.00 0.00 3.71
22 23 0.976641 AAGGACTCAACAGCCATCGA 59.023 50.000 0.00 0.00 0.00 3.59
23 24 1.813513 AAAGGACTCAACAGCCATCG 58.186 50.000 0.00 0.00 0.00 3.84
24 25 7.283127 TCAATATAAAAGGACTCAACAGCCATC 59.717 37.037 0.00 0.00 0.00 3.51
25 26 7.118723 TCAATATAAAAGGACTCAACAGCCAT 58.881 34.615 0.00 0.00 0.00 4.40
26 27 6.480763 TCAATATAAAAGGACTCAACAGCCA 58.519 36.000 0.00 0.00 0.00 4.75
27 28 7.573968 ATCAATATAAAAGGACTCAACAGCC 57.426 36.000 0.00 0.00 0.00 4.85
43 44 8.573885 CGGGTTCCGCTATTCTATATCAATATA 58.426 37.037 0.00 0.00 41.17 0.86
44 45 7.434492 CGGGTTCCGCTATTCTATATCAATAT 58.566 38.462 0.00 0.00 41.17 1.28
45 46 6.183360 CCGGGTTCCGCTATTCTATATCAATA 60.183 42.308 0.00 0.00 46.86 1.90
46 47 5.395324 CCGGGTTCCGCTATTCTATATCAAT 60.395 44.000 0.00 0.00 46.86 2.57
47 48 4.081862 CCGGGTTCCGCTATTCTATATCAA 60.082 45.833 0.00 0.00 46.86 2.57
48 49 3.446161 CCGGGTTCCGCTATTCTATATCA 59.554 47.826 0.00 0.00 46.86 2.15
49 50 3.737355 GCCGGGTTCCGCTATTCTATATC 60.737 52.174 2.18 0.00 46.86 1.63
50 51 2.167900 GCCGGGTTCCGCTATTCTATAT 59.832 50.000 2.18 0.00 46.86 0.86
51 52 1.547372 GCCGGGTTCCGCTATTCTATA 59.453 52.381 2.18 0.00 46.86 1.31
52 53 0.320697 GCCGGGTTCCGCTATTCTAT 59.679 55.000 2.18 0.00 46.86 1.98
53 54 0.757935 AGCCGGGTTCCGCTATTCTA 60.758 55.000 0.00 0.00 46.86 2.10
54 55 1.623542 AAGCCGGGTTCCGCTATTCT 61.624 55.000 14.44 0.00 46.86 2.40
55 56 0.746923 AAAGCCGGGTTCCGCTATTC 60.747 55.000 21.02 0.00 46.86 1.75
56 57 1.029947 CAAAGCCGGGTTCCGCTATT 61.030 55.000 21.02 0.00 46.86 1.73
57 58 1.451387 CAAAGCCGGGTTCCGCTAT 60.451 57.895 21.02 0.00 46.86 2.97
58 59 1.906105 ATCAAAGCCGGGTTCCGCTA 61.906 55.000 21.02 4.01 46.86 4.26
59 60 2.764637 AATCAAAGCCGGGTTCCGCT 62.765 55.000 21.02 0.00 46.86 5.52
60 61 1.873270 AAATCAAAGCCGGGTTCCGC 61.873 55.000 21.02 0.00 46.86 5.54
62 63 0.966179 ACAAATCAAAGCCGGGTTCC 59.034 50.000 21.02 0.00 0.00 3.62
63 64 1.339929 ACACAAATCAAAGCCGGGTTC 59.660 47.619 21.02 0.00 0.00 3.62
64 65 1.068434 CACACAAATCAAAGCCGGGTT 59.932 47.619 14.44 14.44 0.00 4.11
65 66 0.673437 CACACAAATCAAAGCCGGGT 59.327 50.000 0.00 0.00 0.00 5.28
66 67 0.038343 CCACACAAATCAAAGCCGGG 60.038 55.000 2.18 0.00 0.00 5.73
67 68 0.667184 GCCACACAAATCAAAGCCGG 60.667 55.000 0.00 0.00 0.00 6.13
68 69 1.003262 CGCCACACAAATCAAAGCCG 61.003 55.000 0.00 0.00 0.00 5.52
69 70 0.031994 ACGCCACACAAATCAAAGCC 59.968 50.000 0.00 0.00 0.00 4.35
70 71 2.697431 TACGCCACACAAATCAAAGC 57.303 45.000 0.00 0.00 0.00 3.51
71 72 6.523676 AAAAATACGCCACACAAATCAAAG 57.476 33.333 0.00 0.00 0.00 2.77
91 92 9.663904 CAACAAAATTCACTCTCTATCGAAAAA 57.336 29.630 0.00 0.00 0.00 1.94
92 93 9.051679 TCAACAAAATTCACTCTCTATCGAAAA 57.948 29.630 0.00 0.00 0.00 2.29
93 94 8.495949 GTCAACAAAATTCACTCTCTATCGAAA 58.504 33.333 0.00 0.00 0.00 3.46
94 95 7.872993 AGTCAACAAAATTCACTCTCTATCGAA 59.127 33.333 0.00 0.00 0.00 3.71
95 96 7.378966 AGTCAACAAAATTCACTCTCTATCGA 58.621 34.615 0.00 0.00 0.00 3.59
96 97 7.462069 CGAGTCAACAAAATTCACTCTCTATCG 60.462 40.741 0.00 0.00 32.80 2.92
97 98 7.201478 CCGAGTCAACAAAATTCACTCTCTATC 60.201 40.741 0.00 0.00 32.80 2.08
98 99 6.591834 CCGAGTCAACAAAATTCACTCTCTAT 59.408 38.462 0.00 0.00 32.80 1.98
99 100 5.926542 CCGAGTCAACAAAATTCACTCTCTA 59.073 40.000 0.00 0.00 32.80 2.43
100 101 4.752101 CCGAGTCAACAAAATTCACTCTCT 59.248 41.667 0.00 0.00 32.80 3.10
101 102 4.511826 ACCGAGTCAACAAAATTCACTCTC 59.488 41.667 0.00 0.00 32.80 3.20
102 103 4.451900 ACCGAGTCAACAAAATTCACTCT 58.548 39.130 0.00 0.00 32.80 3.24
103 104 4.813296 ACCGAGTCAACAAAATTCACTC 57.187 40.909 0.00 0.00 0.00 3.51
104 105 7.972832 TTATACCGAGTCAACAAAATTCACT 57.027 32.000 0.00 0.00 0.00 3.41
128 129 9.627395 GCTTGTATCGACTGTATGTATTCTAAT 57.373 33.333 0.00 0.00 0.00 1.73
129 130 8.626526 TGCTTGTATCGACTGTATGTATTCTAA 58.373 33.333 0.00 0.00 0.00 2.10
130 131 8.074370 GTGCTTGTATCGACTGTATGTATTCTA 58.926 37.037 0.00 0.00 0.00 2.10
131 132 6.918569 GTGCTTGTATCGACTGTATGTATTCT 59.081 38.462 0.00 0.00 0.00 2.40
132 133 6.695713 TGTGCTTGTATCGACTGTATGTATTC 59.304 38.462 0.00 0.00 0.00 1.75
133 134 6.569780 TGTGCTTGTATCGACTGTATGTATT 58.430 36.000 0.00 0.00 0.00 1.89
134 135 6.144078 TGTGCTTGTATCGACTGTATGTAT 57.856 37.500 0.00 0.00 0.00 2.29
135 136 5.570234 TGTGCTTGTATCGACTGTATGTA 57.430 39.130 0.00 0.00 0.00 2.29
136 137 4.450082 TGTGCTTGTATCGACTGTATGT 57.550 40.909 0.00 0.00 0.00 2.29
137 138 5.550981 GTTTGTGCTTGTATCGACTGTATG 58.449 41.667 0.00 0.00 0.00 2.39
138 139 4.326278 CGTTTGTGCTTGTATCGACTGTAT 59.674 41.667 0.00 0.00 0.00 2.29
139 140 3.671459 CGTTTGTGCTTGTATCGACTGTA 59.329 43.478 0.00 0.00 0.00 2.74
140 141 2.475111 CGTTTGTGCTTGTATCGACTGT 59.525 45.455 0.00 0.00 0.00 3.55
141 142 2.721797 GCGTTTGTGCTTGTATCGACTG 60.722 50.000 0.00 0.00 0.00 3.51
142 143 1.459592 GCGTTTGTGCTTGTATCGACT 59.540 47.619 0.00 0.00 0.00 4.18
143 144 1.782023 CGCGTTTGTGCTTGTATCGAC 60.782 52.381 0.00 0.00 0.00 4.20
144 145 0.436913 CGCGTTTGTGCTTGTATCGA 59.563 50.000 0.00 0.00 0.00 3.59
145 146 2.897855 CGCGTTTGTGCTTGTATCG 58.102 52.632 0.00 0.00 0.00 2.92
154 155 4.155449 ACATATTTAGTTGCGCGTTTGTG 58.845 39.130 8.43 0.00 0.00 3.33
155 156 4.399978 GACATATTTAGTTGCGCGTTTGT 58.600 39.130 8.43 0.00 0.00 2.83
156 157 3.473550 CGACATATTTAGTTGCGCGTTTG 59.526 43.478 8.43 0.00 0.00 2.93
157 158 3.484557 CCGACATATTTAGTTGCGCGTTT 60.485 43.478 8.43 0.00 0.00 3.60
158 159 2.029970 CCGACATATTTAGTTGCGCGTT 59.970 45.455 8.43 0.00 0.00 4.84
159 160 1.591158 CCGACATATTTAGTTGCGCGT 59.409 47.619 8.43 0.00 0.00 6.01
160 161 1.656429 GCCGACATATTTAGTTGCGCG 60.656 52.381 0.00 0.00 0.00 6.86
161 162 1.329292 TGCCGACATATTTAGTTGCGC 59.671 47.619 0.00 0.00 0.00 6.09
162 163 3.666883 TTGCCGACATATTTAGTTGCG 57.333 42.857 0.00 0.00 0.00 4.85
163 164 5.625311 GCTATTTGCCGACATATTTAGTTGC 59.375 40.000 0.00 0.00 35.15 4.17
164 165 6.724263 TGCTATTTGCCGACATATTTAGTTG 58.276 36.000 0.00 0.00 42.00 3.16
165 166 6.935741 TGCTATTTGCCGACATATTTAGTT 57.064 33.333 0.00 0.00 42.00 2.24
166 167 6.935741 TTGCTATTTGCCGACATATTTAGT 57.064 33.333 0.00 0.00 42.00 2.24
167 168 7.417612 ACTTTGCTATTTGCCGACATATTTAG 58.582 34.615 0.00 0.00 42.00 1.85
168 169 7.066404 TGACTTTGCTATTTGCCGACATATTTA 59.934 33.333 0.00 0.00 42.00 1.40
169 170 6.127758 TGACTTTGCTATTTGCCGACATATTT 60.128 34.615 0.00 0.00 42.00 1.40
170 171 5.356751 TGACTTTGCTATTTGCCGACATATT 59.643 36.000 0.00 0.00 42.00 1.28
171 172 4.881273 TGACTTTGCTATTTGCCGACATAT 59.119 37.500 0.00 0.00 42.00 1.78
172 173 4.257731 TGACTTTGCTATTTGCCGACATA 58.742 39.130 0.00 0.00 42.00 2.29
173 174 3.081061 TGACTTTGCTATTTGCCGACAT 58.919 40.909 0.00 0.00 42.00 3.06
174 175 2.483877 CTGACTTTGCTATTTGCCGACA 59.516 45.455 0.00 0.00 42.00 4.35
175 176 2.484264 ACTGACTTTGCTATTTGCCGAC 59.516 45.455 0.00 0.00 42.00 4.79
176 177 2.483877 CACTGACTTTGCTATTTGCCGA 59.516 45.455 0.00 0.00 42.00 5.54
177 178 2.855180 CACTGACTTTGCTATTTGCCG 58.145 47.619 0.00 0.00 42.00 5.69
178 179 2.030007 TGCACTGACTTTGCTATTTGCC 60.030 45.455 0.00 0.00 40.86 4.52
179 180 3.058016 TCTGCACTGACTTTGCTATTTGC 60.058 43.478 0.00 0.00 40.86 3.68
180 181 4.720090 CTCTGCACTGACTTTGCTATTTG 58.280 43.478 0.00 0.00 40.86 2.32
181 182 3.190118 GCTCTGCACTGACTTTGCTATTT 59.810 43.478 0.00 0.00 40.86 1.40
182 183 2.746362 GCTCTGCACTGACTTTGCTATT 59.254 45.455 0.00 0.00 40.86 1.73
183 184 2.289882 TGCTCTGCACTGACTTTGCTAT 60.290 45.455 0.00 0.00 40.86 2.97
184 185 1.070601 TGCTCTGCACTGACTTTGCTA 59.929 47.619 0.00 0.00 40.86 3.49
185 186 0.179037 TGCTCTGCACTGACTTTGCT 60.179 50.000 0.00 0.00 40.86 3.91
186 187 0.664761 TTGCTCTGCACTGACTTTGC 59.335 50.000 0.00 0.00 38.71 3.68
187 188 1.672363 TGTTGCTCTGCACTGACTTTG 59.328 47.619 0.00 0.00 38.71 2.77
188 189 2.042686 TGTTGCTCTGCACTGACTTT 57.957 45.000 0.00 0.00 38.71 2.66
189 190 1.878088 CATGTTGCTCTGCACTGACTT 59.122 47.619 0.00 0.00 38.71 3.01
190 191 1.071228 TCATGTTGCTCTGCACTGACT 59.929 47.619 0.00 0.00 38.71 3.41
191 192 1.463831 CTCATGTTGCTCTGCACTGAC 59.536 52.381 0.00 0.00 38.71 3.51
192 193 1.071228 ACTCATGTTGCTCTGCACTGA 59.929 47.619 0.00 0.00 38.71 3.41
193 194 1.197036 CACTCATGTTGCTCTGCACTG 59.803 52.381 0.00 0.00 38.71 3.66
194 195 1.202734 ACACTCATGTTGCTCTGCACT 60.203 47.619 0.00 0.00 38.71 4.40
195 196 1.069432 CACACTCATGTTGCTCTGCAC 60.069 52.381 0.00 0.00 38.71 4.57
196 197 1.232119 CACACTCATGTTGCTCTGCA 58.768 50.000 0.00 0.00 36.72 4.41
197 198 0.520404 CCACACTCATGTTGCTCTGC 59.480 55.000 0.00 0.00 36.72 4.26
198 199 2.174363 TCCACACTCATGTTGCTCTG 57.826 50.000 0.00 0.00 36.72 3.35
199 200 2.708051 CATCCACACTCATGTTGCTCT 58.292 47.619 0.00 0.00 36.72 4.09
200 201 1.131883 GCATCCACACTCATGTTGCTC 59.868 52.381 0.00 0.00 37.20 4.26
201 202 1.171308 GCATCCACACTCATGTTGCT 58.829 50.000 0.00 0.00 37.20 3.91
202 203 0.883153 TGCATCCACACTCATGTTGC 59.117 50.000 0.00 0.00 39.53 4.17
203 204 3.646611 TTTGCATCCACACTCATGTTG 57.353 42.857 0.00 0.00 36.72 3.33
204 205 4.877378 AATTTGCATCCACACTCATGTT 57.123 36.364 0.00 0.00 36.72 2.71
205 206 4.877378 AAATTTGCATCCACACTCATGT 57.123 36.364 0.00 0.00 40.80 3.21
227 228 2.685388 TCCACACTGTTCGATGCAAAAA 59.315 40.909 0.00 0.00 0.00 1.94
228 229 2.293170 TCCACACTGTTCGATGCAAAA 58.707 42.857 0.00 0.00 0.00 2.44
229 230 1.960417 TCCACACTGTTCGATGCAAA 58.040 45.000 0.00 0.00 0.00 3.68
230 231 1.805943 CATCCACACTGTTCGATGCAA 59.194 47.619 0.00 0.00 0.00 4.08
231 232 1.441738 CATCCACACTGTTCGATGCA 58.558 50.000 0.00 0.00 0.00 3.96
233 234 1.441738 TGCATCCACACTGTTCGATG 58.558 50.000 10.07 10.07 36.11 3.84
234 235 2.408271 ATGCATCCACACTGTTCGAT 57.592 45.000 0.00 0.00 0.00 3.59
235 236 2.183478 AATGCATCCACACTGTTCGA 57.817 45.000 0.00 0.00 0.00 3.71
236 237 2.587956 CAAATGCATCCACACTGTTCG 58.412 47.619 0.00 0.00 0.00 3.95
237 238 2.557924 TCCAAATGCATCCACACTGTTC 59.442 45.455 0.00 0.00 0.00 3.18
238 239 2.559668 CTCCAAATGCATCCACACTGTT 59.440 45.455 0.00 0.00 0.00 3.16
239 240 2.165167 CTCCAAATGCATCCACACTGT 58.835 47.619 0.00 0.00 0.00 3.55
240 241 2.422479 CTCTCCAAATGCATCCACACTG 59.578 50.000 0.00 0.00 0.00 3.66
241 242 2.719739 CTCTCCAAATGCATCCACACT 58.280 47.619 0.00 0.00 0.00 3.55
242 243 1.133790 GCTCTCCAAATGCATCCACAC 59.866 52.381 0.00 0.00 0.00 3.82
243 244 1.466856 GCTCTCCAAATGCATCCACA 58.533 50.000 0.00 0.00 0.00 4.17
244 245 0.379669 CGCTCTCCAAATGCATCCAC 59.620 55.000 0.00 0.00 0.00 4.02
245 246 1.378882 GCGCTCTCCAAATGCATCCA 61.379 55.000 0.00 0.00 0.00 3.41
246 247 1.358046 GCGCTCTCCAAATGCATCC 59.642 57.895 0.00 0.00 0.00 3.51
247 248 1.010350 CGCGCTCTCCAAATGCATC 60.010 57.895 5.56 0.00 0.00 3.91
248 249 1.746615 ACGCGCTCTCCAAATGCAT 60.747 52.632 5.73 0.00 0.00 3.96
249 250 2.358615 ACGCGCTCTCCAAATGCA 60.359 55.556 5.73 0.00 0.00 3.96
250 251 1.709147 ATCACGCGCTCTCCAAATGC 61.709 55.000 5.73 0.00 0.00 3.56
251 252 0.729116 AATCACGCGCTCTCCAAATG 59.271 50.000 5.73 0.00 0.00 2.32
252 253 2.205074 CTAATCACGCGCTCTCCAAAT 58.795 47.619 5.73 0.00 0.00 2.32
253 254 1.640428 CTAATCACGCGCTCTCCAAA 58.360 50.000 5.73 0.00 0.00 3.28
254 255 0.806102 GCTAATCACGCGCTCTCCAA 60.806 55.000 5.73 0.00 0.00 3.53
255 256 1.226974 GCTAATCACGCGCTCTCCA 60.227 57.895 5.73 0.00 0.00 3.86
256 257 2.296480 CGCTAATCACGCGCTCTCC 61.296 63.158 5.73 0.00 44.33 3.71
257 258 3.216290 CGCTAATCACGCGCTCTC 58.784 61.111 5.73 0.00 44.33 3.20
264 265 0.588233 ACGTAGCGTCGCTAATCACG 60.588 55.000 28.97 28.97 43.07 4.35
265 266 2.032652 GTACGTAGCGTCGCTAATCAC 58.967 52.381 27.51 19.64 43.07 3.06
266 267 1.665169 TGTACGTAGCGTCGCTAATCA 59.335 47.619 27.51 19.27 43.07 2.57
267 268 2.032652 GTGTACGTAGCGTCGCTAATC 58.967 52.381 27.51 15.56 43.07 1.75
268 269 1.268234 GGTGTACGTAGCGTCGCTAAT 60.268 52.381 27.51 20.29 43.07 1.73
269 270 0.096976 GGTGTACGTAGCGTCGCTAA 59.903 55.000 27.51 10.71 43.07 3.09
270 271 1.018752 TGGTGTACGTAGCGTCGCTA 61.019 55.000 22.68 22.68 41.54 4.26
271 272 1.855213 TTGGTGTACGTAGCGTCGCT 61.855 55.000 25.08 25.08 41.54 4.93
272 273 1.400990 CTTGGTGTACGTAGCGTCGC 61.401 60.000 9.80 9.80 41.54 5.19
273 274 0.166597 TCTTGGTGTACGTAGCGTCG 59.833 55.000 0.00 2.37 41.54 5.12
274 275 1.198637 ACTCTTGGTGTACGTAGCGTC 59.801 52.381 0.00 0.00 41.54 5.19
275 276 1.242076 ACTCTTGGTGTACGTAGCGT 58.758 50.000 0.00 0.00 44.35 5.07
276 277 2.417933 ACTACTCTTGGTGTACGTAGCG 59.582 50.000 0.00 0.00 32.81 4.26
277 278 4.431661 AACTACTCTTGGTGTACGTAGC 57.568 45.455 0.00 0.00 32.81 3.58
278 279 8.025445 ACAATTAACTACTCTTGGTGTACGTAG 58.975 37.037 0.00 0.00 35.05 3.51
279 280 7.885297 ACAATTAACTACTCTTGGTGTACGTA 58.115 34.615 0.00 0.00 0.00 3.57
280 281 6.752168 ACAATTAACTACTCTTGGTGTACGT 58.248 36.000 0.00 0.00 0.00 3.57
281 282 8.746922 TTACAATTAACTACTCTTGGTGTACG 57.253 34.615 0.00 0.00 0.00 3.67
295 296 9.938280 TGACAGCAAGTACTATTACAATTAACT 57.062 29.630 0.00 0.00 0.00 2.24
297 298 8.879759 GCTGACAGCAAGTACTATTACAATTAA 58.120 33.333 22.62 0.00 41.89 1.40
298 299 7.494625 GGCTGACAGCAAGTACTATTACAATTA 59.505 37.037 27.87 0.00 44.75 1.40
299 300 6.316390 GGCTGACAGCAAGTACTATTACAATT 59.684 38.462 27.87 0.00 44.75 2.32
300 301 5.817816 GGCTGACAGCAAGTACTATTACAAT 59.182 40.000 27.87 0.00 44.75 2.71
301 302 5.175859 GGCTGACAGCAAGTACTATTACAA 58.824 41.667 27.87 0.00 44.75 2.41
302 303 4.676986 CGGCTGACAGCAAGTACTATTACA 60.677 45.833 27.87 0.00 44.75 2.41
303 304 3.797256 CGGCTGACAGCAAGTACTATTAC 59.203 47.826 27.87 5.88 44.75 1.89
304 305 3.181479 CCGGCTGACAGCAAGTACTATTA 60.181 47.826 27.87 0.00 44.75 0.98
305 306 2.418746 CCGGCTGACAGCAAGTACTATT 60.419 50.000 27.87 0.00 44.75 1.73
306 307 1.137086 CCGGCTGACAGCAAGTACTAT 59.863 52.381 27.87 0.00 44.75 2.12
307 308 0.530744 CCGGCTGACAGCAAGTACTA 59.469 55.000 27.87 0.00 44.75 1.82
308 309 1.293498 CCGGCTGACAGCAAGTACT 59.707 57.895 27.87 0.00 44.75 2.73
309 310 1.004918 ACCGGCTGACAGCAAGTAC 60.005 57.895 27.87 9.94 44.75 2.73
310 311 1.185618 AGACCGGCTGACAGCAAGTA 61.186 55.000 27.87 0.00 44.75 2.24
311 312 2.031163 GACCGGCTGACAGCAAGT 59.969 61.111 27.87 22.83 44.75 3.16
312 313 2.345244 AGACCGGCTGACAGCAAG 59.655 61.111 27.87 19.91 44.75 4.01
321 322 0.320771 GATGTGAACACAGACCGGCT 60.321 55.000 12.97 0.00 45.48 5.52
322 323 1.626654 CGATGTGAACACAGACCGGC 61.627 60.000 12.97 0.00 45.48 6.13
323 324 1.626654 GCGATGTGAACACAGACCGG 61.627 60.000 19.59 0.00 45.48 5.28
324 325 0.943835 TGCGATGTGAACACAGACCG 60.944 55.000 12.97 15.01 45.48 4.79
325 326 0.792640 CTGCGATGTGAACACAGACC 59.207 55.000 12.97 4.68 45.48 3.85
326 327 1.783284 TCTGCGATGTGAACACAGAC 58.217 50.000 12.97 8.71 45.48 3.51
327 328 1.068434 TGTCTGCGATGTGAACACAGA 59.932 47.619 12.97 4.13 45.48 3.41
328 329 1.458445 CTGTCTGCGATGTGAACACAG 59.542 52.381 12.97 2.41 45.48 3.66
329 330 1.501169 CTGTCTGCGATGTGAACACA 58.499 50.000 10.04 10.04 46.44 3.72
330 331 0.164647 GCTGTCTGCGATGTGAACAC 59.835 55.000 0.00 0.00 0.00 3.32
331 332 2.532186 GCTGTCTGCGATGTGAACA 58.468 52.632 0.00 0.00 0.00 3.18
357 358 1.498865 AAGAGTTGACTGCGCCAACG 61.499 55.000 18.21 2.58 46.10 4.10
358 359 0.235926 GAAGAGTTGACTGCGCCAAC 59.764 55.000 17.08 17.08 42.97 3.77
359 360 0.884704 GGAAGAGTTGACTGCGCCAA 60.885 55.000 4.18 0.00 0.00 4.52
360 361 1.301716 GGAAGAGTTGACTGCGCCA 60.302 57.895 4.18 0.00 0.00 5.69
361 362 1.004440 AGGAAGAGTTGACTGCGCC 60.004 57.895 4.18 0.00 0.00 6.53
362 363 1.016653 GGAGGAAGAGTTGACTGCGC 61.017 60.000 0.00 0.00 0.00 6.09
363 364 0.605589 AGGAGGAAGAGTTGACTGCG 59.394 55.000 0.00 0.00 0.00 5.18
364 365 1.066502 GGAGGAGGAAGAGTTGACTGC 60.067 57.143 0.00 0.00 0.00 4.40
365 366 2.251818 TGGAGGAGGAAGAGTTGACTG 58.748 52.381 0.00 0.00 0.00 3.51
366 367 2.704190 TGGAGGAGGAAGAGTTGACT 57.296 50.000 0.00 0.00 0.00 3.41
367 368 2.614229 GCTTGGAGGAGGAAGAGTTGAC 60.614 54.545 0.00 0.00 0.00 3.18
368 369 1.625818 GCTTGGAGGAGGAAGAGTTGA 59.374 52.381 0.00 0.00 0.00 3.18
369 370 1.674221 CGCTTGGAGGAGGAAGAGTTG 60.674 57.143 0.00 0.00 0.00 3.16
370 371 0.610687 CGCTTGGAGGAGGAAGAGTT 59.389 55.000 0.00 0.00 0.00 3.01
371 372 1.261238 CCGCTTGGAGGAGGAAGAGT 61.261 60.000 0.00 0.00 33.02 3.24
372 373 1.261238 ACCGCTTGGAGGAGGAAGAG 61.261 60.000 0.00 0.00 36.26 2.85
373 374 0.836400 AACCGCTTGGAGGAGGAAGA 60.836 55.000 0.00 0.00 36.26 2.87
374 375 0.674895 CAACCGCTTGGAGGAGGAAG 60.675 60.000 0.00 0.00 36.26 3.46
375 376 1.374947 CAACCGCTTGGAGGAGGAA 59.625 57.895 0.00 0.00 36.26 3.36
376 377 1.415672 AACAACCGCTTGGAGGAGGA 61.416 55.000 0.00 0.00 36.26 3.71
377 378 0.955919 GAACAACCGCTTGGAGGAGG 60.956 60.000 0.00 0.00 36.26 4.30
378 379 0.250295 TGAACAACCGCTTGGAGGAG 60.250 55.000 0.00 0.00 36.26 3.69
379 380 0.400213 ATGAACAACCGCTTGGAGGA 59.600 50.000 0.00 0.00 36.26 3.71
380 381 0.523072 CATGAACAACCGCTTGGAGG 59.477 55.000 0.00 0.00 36.26 4.30
381 382 1.466167 CTCATGAACAACCGCTTGGAG 59.534 52.381 0.00 0.00 36.26 3.86
382 383 1.522668 CTCATGAACAACCGCTTGGA 58.477 50.000 0.00 0.00 36.26 3.53
383 384 0.109597 GCTCATGAACAACCGCTTGG 60.110 55.000 0.00 0.00 39.35 3.61
384 385 0.877071 AGCTCATGAACAACCGCTTG 59.123 50.000 0.00 0.00 0.00 4.01
385 386 2.472695 TAGCTCATGAACAACCGCTT 57.527 45.000 9.81 0.00 0.00 4.68
386 387 2.350522 CTTAGCTCATGAACAACCGCT 58.649 47.619 9.51 9.51 0.00 5.52
387 388 1.202076 GCTTAGCTCATGAACAACCGC 60.202 52.381 0.00 0.00 0.00 5.68
388 389 2.076100 TGCTTAGCTCATGAACAACCG 58.924 47.619 5.60 0.00 0.00 4.44
389 390 3.671702 GCTTGCTTAGCTCATGAACAACC 60.672 47.826 5.60 0.00 46.77 3.77
390 391 3.496155 GCTTGCTTAGCTCATGAACAAC 58.504 45.455 5.60 0.00 46.77 3.32
391 392 3.837213 GCTTGCTTAGCTCATGAACAA 57.163 42.857 5.60 0.00 46.77 2.83
402 403 1.135660 TCGTCTCGTCTGCTTGCTTAG 60.136 52.381 0.00 0.00 0.00 2.18
403 404 0.879090 TCGTCTCGTCTGCTTGCTTA 59.121 50.000 0.00 0.00 0.00 3.09
404 405 0.244994 ATCGTCTCGTCTGCTTGCTT 59.755 50.000 0.00 0.00 0.00 3.91
405 406 0.457509 CATCGTCTCGTCTGCTTGCT 60.458 55.000 0.00 0.00 0.00 3.91
406 407 0.734253 ACATCGTCTCGTCTGCTTGC 60.734 55.000 0.00 0.00 0.00 4.01
407 408 2.445316 CTACATCGTCTCGTCTGCTTG 58.555 52.381 0.00 0.00 0.00 4.01
408 409 1.202200 GCTACATCGTCTCGTCTGCTT 60.202 52.381 0.00 0.00 0.00 3.91
409 410 0.378962 GCTACATCGTCTCGTCTGCT 59.621 55.000 0.00 0.00 0.00 4.24
410 411 0.592754 GGCTACATCGTCTCGTCTGC 60.593 60.000 0.00 0.00 0.00 4.26
411 412 0.029567 GGGCTACATCGTCTCGTCTG 59.970 60.000 0.00 0.00 0.00 3.51
412 413 1.437772 CGGGCTACATCGTCTCGTCT 61.438 60.000 0.00 0.00 0.00 4.18
413 414 1.009900 CGGGCTACATCGTCTCGTC 60.010 63.158 0.00 0.00 0.00 4.20
414 415 3.108343 CGGGCTACATCGTCTCGT 58.892 61.111 0.00 0.00 0.00 4.18
415 416 2.353607 GCGGGCTACATCGTCTCG 60.354 66.667 0.00 0.00 0.00 4.04
416 417 2.353607 CGCGGGCTACATCGTCTC 60.354 66.667 0.00 0.00 0.00 3.36
417 418 3.900892 CCGCGGGCTACATCGTCT 61.901 66.667 20.10 0.00 0.00 4.18
418 419 3.896133 TCCGCGGGCTACATCGTC 61.896 66.667 27.83 0.00 0.00 4.20
419 420 4.203076 GTCCGCGGGCTACATCGT 62.203 66.667 25.46 0.00 0.00 3.73
420 421 3.825833 GAGTCCGCGGGCTACATCG 62.826 68.421 35.72 0.00 0.00 3.84
421 422 2.027751 GAGTCCGCGGGCTACATC 59.972 66.667 35.72 17.57 0.00 3.06
422 423 2.442272 AGAGTCCGCGGGCTACAT 60.442 61.111 35.72 19.45 0.00 2.29
423 424 3.449227 CAGAGTCCGCGGGCTACA 61.449 66.667 35.72 5.59 0.00 2.74
424 425 3.450115 ACAGAGTCCGCGGGCTAC 61.450 66.667 35.72 25.12 0.00 3.58
425 426 3.449227 CACAGAGTCCGCGGGCTA 61.449 66.667 35.72 6.58 0.00 3.93
427 428 4.148825 ATCACAGAGTCCGCGGGC 62.149 66.667 25.39 25.39 0.00 6.13
428 429 2.202797 CATCACAGAGTCCGCGGG 60.203 66.667 27.83 11.50 0.00 6.13
429 430 2.202797 CCATCACAGAGTCCGCGG 60.203 66.667 22.12 22.12 0.00 6.46
430 431 1.226802 CTCCATCACAGAGTCCGCG 60.227 63.158 0.00 0.00 0.00 6.46
431 432 0.179124 GTCTCCATCACAGAGTCCGC 60.179 60.000 0.00 0.00 32.93 5.54
432 433 1.177401 TGTCTCCATCACAGAGTCCG 58.823 55.000 0.00 0.00 32.93 4.79
433 434 2.158986 CCATGTCTCCATCACAGAGTCC 60.159 54.545 0.00 0.00 32.93 3.85
434 435 2.741228 GCCATGTCTCCATCACAGAGTC 60.741 54.545 0.00 0.00 32.93 3.36
435 436 1.209019 GCCATGTCTCCATCACAGAGT 59.791 52.381 0.00 0.00 32.93 3.24
436 437 1.208776 TGCCATGTCTCCATCACAGAG 59.791 52.381 0.00 0.00 0.00 3.35
437 438 1.278537 TGCCATGTCTCCATCACAGA 58.721 50.000 0.00 0.00 0.00 3.41
438 439 2.158798 AGATGCCATGTCTCCATCACAG 60.159 50.000 12.43 0.00 38.21 3.66
439 440 1.841919 AGATGCCATGTCTCCATCACA 59.158 47.619 12.43 0.00 38.21 3.58
440 441 2.634815 AGATGCCATGTCTCCATCAC 57.365 50.000 12.43 0.00 38.21 3.06
441 442 2.775960 AGAAGATGCCATGTCTCCATCA 59.224 45.455 12.43 0.00 38.21 3.07
442 443 3.401182 GAGAAGATGCCATGTCTCCATC 58.599 50.000 4.34 0.00 36.49 3.51
443 444 3.488778 GAGAAGATGCCATGTCTCCAT 57.511 47.619 4.34 0.00 32.08 3.41
444 445 2.996249 GAGAAGATGCCATGTCTCCA 57.004 50.000 4.34 0.00 32.08 3.86
445 446 2.252976 GGAGAAGATGCCATGTCTCC 57.747 55.000 15.00 15.00 46.96 3.71
446 447 1.137872 ACGGAGAAGATGCCATGTCTC 59.862 52.381 6.47 6.47 36.57 3.36
447 448 1.198713 ACGGAGAAGATGCCATGTCT 58.801 50.000 0.00 0.00 0.00 3.41
448 449 1.667724 CAACGGAGAAGATGCCATGTC 59.332 52.381 0.00 0.00 0.00 3.06
449 450 1.278985 TCAACGGAGAAGATGCCATGT 59.721 47.619 0.00 0.00 0.00 3.21
450 451 1.938577 CTCAACGGAGAAGATGCCATG 59.061 52.381 0.00 0.00 44.26 3.66
451 452 1.745141 GCTCAACGGAGAAGATGCCAT 60.745 52.381 0.00 0.00 44.26 4.40
452 453 0.391661 GCTCAACGGAGAAGATGCCA 60.392 55.000 0.00 0.00 44.26 4.92
453 454 1.092345 GGCTCAACGGAGAAGATGCC 61.092 60.000 0.00 0.00 44.26 4.40
454 455 0.391661 TGGCTCAACGGAGAAGATGC 60.392 55.000 0.00 0.00 44.26 3.91
455 456 1.649664 CTGGCTCAACGGAGAAGATG 58.350 55.000 0.00 0.00 44.26 2.90
456 457 0.107945 GCTGGCTCAACGGAGAAGAT 60.108 55.000 0.00 0.00 44.26 2.40
457 458 1.293498 GCTGGCTCAACGGAGAAGA 59.707 57.895 0.00 0.00 44.26 2.87
458 459 0.392193 ATGCTGGCTCAACGGAGAAG 60.392 55.000 0.00 0.00 44.26 2.85
459 460 0.036732 AATGCTGGCTCAACGGAGAA 59.963 50.000 0.00 0.00 44.26 2.87
460 461 0.036732 AAATGCTGGCTCAACGGAGA 59.963 50.000 0.00 0.00 44.26 3.71
461 462 0.883833 AAAATGCTGGCTCAACGGAG 59.116 50.000 0.00 0.00 44.33 4.63
462 463 1.000385 CAAAAATGCTGGCTCAACGGA 60.000 47.619 0.00 0.00 0.00 4.69
463 464 1.269726 ACAAAAATGCTGGCTCAACGG 60.270 47.619 0.00 0.00 0.00 4.44
464 465 2.053627 GACAAAAATGCTGGCTCAACG 58.946 47.619 0.00 0.00 0.00 4.10
465 466 3.096489 TGACAAAAATGCTGGCTCAAC 57.904 42.857 0.00 0.00 0.00 3.18
466 467 3.118847 TGTTGACAAAAATGCTGGCTCAA 60.119 39.130 0.00 0.00 0.00 3.02
467 468 2.429971 TGTTGACAAAAATGCTGGCTCA 59.570 40.909 0.00 0.00 0.00 4.26
468 469 2.796593 GTGTTGACAAAAATGCTGGCTC 59.203 45.455 0.00 0.00 0.00 4.70
469 470 2.168106 TGTGTTGACAAAAATGCTGGCT 59.832 40.909 0.00 0.00 0.00 4.75
470 471 2.548875 TGTGTTGACAAAAATGCTGGC 58.451 42.857 0.00 0.00 0.00 4.85
471 472 4.370049 TCATGTGTTGACAAAAATGCTGG 58.630 39.130 0.00 0.00 35.11 4.85
472 473 5.283294 TCTCATGTGTTGACAAAAATGCTG 58.717 37.500 0.00 0.00 35.11 4.41
473 474 5.518848 TCTCATGTGTTGACAAAAATGCT 57.481 34.783 0.00 0.00 35.11 3.79
474 475 5.519566 TGTTCTCATGTGTTGACAAAAATGC 59.480 36.000 0.00 0.00 35.11 3.56
475 476 6.753279 ACTGTTCTCATGTGTTGACAAAAATG 59.247 34.615 0.00 0.00 35.11 2.32
476 477 6.866480 ACTGTTCTCATGTGTTGACAAAAAT 58.134 32.000 0.00 0.00 35.11 1.82
477 478 6.072230 TGACTGTTCTCATGTGTTGACAAAAA 60.072 34.615 0.00 0.00 35.11 1.94
478 479 5.414144 TGACTGTTCTCATGTGTTGACAAAA 59.586 36.000 0.00 0.00 35.11 2.44
479 480 4.940654 TGACTGTTCTCATGTGTTGACAAA 59.059 37.500 0.00 0.00 35.11 2.83
480 481 4.512484 TGACTGTTCTCATGTGTTGACAA 58.488 39.130 0.00 0.00 35.11 3.18
481 482 4.122046 CTGACTGTTCTCATGTGTTGACA 58.878 43.478 0.00 0.00 36.22 3.58
482 483 4.371786 TCTGACTGTTCTCATGTGTTGAC 58.628 43.478 0.00 0.00 0.00 3.18
483 484 4.670896 TCTGACTGTTCTCATGTGTTGA 57.329 40.909 0.00 0.00 0.00 3.18
484 485 4.378149 GCATCTGACTGTTCTCATGTGTTG 60.378 45.833 0.00 0.00 0.00 3.33
485 486 3.750130 GCATCTGACTGTTCTCATGTGTT 59.250 43.478 0.00 0.00 0.00 3.32
486 487 3.244318 TGCATCTGACTGTTCTCATGTGT 60.244 43.478 0.00 0.00 0.00 3.72
487 488 3.332034 TGCATCTGACTGTTCTCATGTG 58.668 45.455 0.00 0.00 0.00 3.21
488 489 3.007723 ACTGCATCTGACTGTTCTCATGT 59.992 43.478 0.00 0.00 0.00 3.21
489 490 3.597255 ACTGCATCTGACTGTTCTCATG 58.403 45.455 0.00 0.00 0.00 3.07
490 491 3.977134 ACTGCATCTGACTGTTCTCAT 57.023 42.857 0.00 0.00 0.00 2.90
491 492 3.758755 AACTGCATCTGACTGTTCTCA 57.241 42.857 0.00 0.00 0.00 3.27
492 493 5.659463 AGATAACTGCATCTGACTGTTCTC 58.341 41.667 0.00 0.00 33.93 2.87
493 494 5.674052 AGATAACTGCATCTGACTGTTCT 57.326 39.130 0.00 0.00 33.93 3.01
494 495 6.734104 AAAGATAACTGCATCTGACTGTTC 57.266 37.500 0.00 0.00 35.42 3.18
495 496 6.939163 AGAAAAGATAACTGCATCTGACTGTT 59.061 34.615 0.00 0.00 35.42 3.16
496 497 6.471146 AGAAAAGATAACTGCATCTGACTGT 58.529 36.000 0.00 0.00 35.42 3.55
497 498 6.981762 AGAAAAGATAACTGCATCTGACTG 57.018 37.500 0.00 0.00 35.42 3.51
498 499 9.678260 AAATAGAAAAGATAACTGCATCTGACT 57.322 29.630 0.00 0.00 35.42 3.41
524 525 7.201785 GCTTGATTATATCCGAAGGGTGAAAAA 60.202 37.037 0.00 0.00 44.06 1.94
525 526 6.262273 GCTTGATTATATCCGAAGGGTGAAAA 59.738 38.462 0.00 0.00 44.06 2.29
526 527 5.763204 GCTTGATTATATCCGAAGGGTGAAA 59.237 40.000 0.00 0.00 44.06 2.69
527 528 5.305585 GCTTGATTATATCCGAAGGGTGAA 58.694 41.667 0.00 0.00 44.06 3.18
528 529 4.262894 GGCTTGATTATATCCGAAGGGTGA 60.263 45.833 0.00 0.00 44.06 4.02
529 530 4.003648 GGCTTGATTATATCCGAAGGGTG 58.996 47.826 0.00 0.00 44.06 4.61
533 534 6.401394 TCAGATGGCTTGATTATATCCGAAG 58.599 40.000 0.00 0.00 0.00 3.79
534 535 6.358974 TCAGATGGCTTGATTATATCCGAA 57.641 37.500 0.00 0.00 0.00 4.30
535 536 6.550938 ATCAGATGGCTTGATTATATCCGA 57.449 37.500 0.00 0.00 0.00 4.55
536 537 5.461407 CGATCAGATGGCTTGATTATATCCG 59.539 44.000 0.00 0.00 0.00 4.18
537 538 6.344500 ACGATCAGATGGCTTGATTATATCC 58.656 40.000 0.00 0.00 0.00 2.59
596 597 5.393962 GGAACTCAACCAAAAAGATCGATG 58.606 41.667 0.54 0.00 0.00 3.84
700 701 7.599998 GGAGTTCCGTTGTTATTCTAGTTGTTA 59.400 37.037 0.00 0.00 0.00 2.41
701 702 6.426025 GGAGTTCCGTTGTTATTCTAGTTGTT 59.574 38.462 0.00 0.00 0.00 2.83
702 703 5.930569 GGAGTTCCGTTGTTATTCTAGTTGT 59.069 40.000 0.00 0.00 0.00 3.32
703 704 6.404712 GGAGTTCCGTTGTTATTCTAGTTG 57.595 41.667 0.00 0.00 0.00 3.16
723 724 2.500392 TTGGTTGGTTAATCCCGGAG 57.500 50.000 0.73 0.00 34.77 4.63
755 761 7.787026 CAACGTTAGTTACACGAATTCGTTTTA 59.213 33.333 29.89 20.29 44.11 1.52
798 963 5.007682 TCCAACTTGGCTATTTGTAGGTTC 58.992 41.667 2.52 0.00 37.47 3.62
841 1006 2.112815 GGTTTCCGCCGAATCCAGG 61.113 63.158 9.27 0.00 37.66 4.45
854 1019 1.812571 CCGGCTGGCATATATGGTTTC 59.187 52.381 14.51 0.00 0.00 2.78
909 1079 2.029649 ACGCAGCGAGTTACTCCTTTAA 60.030 45.455 24.65 0.00 0.00 1.52
921 1091 1.121240 CGGTCTTATAACGCAGCGAG 58.879 55.000 24.65 8.09 31.47 5.03
965 1139 3.037833 TGCTCTGCGTGCGAACAG 61.038 61.111 0.00 0.00 35.15 3.16
966 1140 3.337889 GTGCTCTGCGTGCGAACA 61.338 61.111 0.00 0.00 0.00 3.18
967 1141 4.077188 GGTGCTCTGCGTGCGAAC 62.077 66.667 0.00 0.00 0.00 3.95
968 1142 4.600576 TGGTGCTCTGCGTGCGAA 62.601 61.111 0.00 0.00 0.00 4.70
973 1147 3.231889 CTGGACTGGTGCTCTGCGT 62.232 63.158 0.00 0.00 0.00 5.24
974 1148 2.433838 CTGGACTGGTGCTCTGCG 60.434 66.667 0.00 0.00 0.00 5.18
975 1149 2.745492 GCTGGACTGGTGCTCTGC 60.745 66.667 0.00 0.00 0.00 4.26
976 1150 1.877576 TACGCTGGACTGGTGCTCTG 61.878 60.000 0.00 0.00 0.00 3.35
977 1151 1.599606 CTACGCTGGACTGGTGCTCT 61.600 60.000 0.00 0.00 0.00 4.09
978 1152 1.153745 CTACGCTGGACTGGTGCTC 60.154 63.158 0.00 0.00 0.00 4.26
1188 1398 1.177401 GTCAAAGATTGGTCTGCCCC 58.823 55.000 0.00 0.00 34.13 5.80
1190 1400 3.319122 ACAAAGTCAAAGATTGGTCTGCC 59.681 43.478 0.00 0.00 34.13 4.85
1202 1412 2.354510 CGGCTCAGTCAACAAAGTCAAA 59.645 45.455 0.00 0.00 0.00 2.69
1369 1580 3.223435 CGGAGGTGTAGTAGGTGATGAT 58.777 50.000 0.00 0.00 0.00 2.45
1496 1716 2.037136 GCTCACGCAAGAGGCATGT 61.037 57.895 4.75 0.00 45.17 3.21
1530 1754 0.602638 AACATTGCCTGAACTCGCGA 60.603 50.000 9.26 9.26 0.00 5.87
1565 1789 2.099921 ACACATGATCGAGCAGGTAGAC 59.900 50.000 21.35 0.00 30.79 2.59
1637 1861 1.595382 CCCGATCGCAGTCCCAATC 60.595 63.158 10.32 0.00 0.00 2.67
1638 1862 1.046472 TACCCGATCGCAGTCCCAAT 61.046 55.000 10.32 0.00 0.00 3.16
1701 1931 2.341257 ACTTAACAGTGCATCAGAGCG 58.659 47.619 0.00 0.00 37.31 5.03
1733 1971 5.858381 ACTGATCATCATAAACGGCATAGT 58.142 37.500 0.00 0.00 0.00 2.12
1734 1972 6.424812 TCAACTGATCATCATAAACGGCATAG 59.575 38.462 0.00 0.00 0.00 2.23
1735 1973 6.287525 TCAACTGATCATCATAAACGGCATA 58.712 36.000 0.00 0.00 0.00 3.14
2042 2780 3.876914 TGCAGACACAAAGTTACTCTTGG 59.123 43.478 10.34 0.00 36.40 3.61
2043 2781 5.008019 ACATGCAGACACAAAGTTACTCTTG 59.992 40.000 0.00 5.99 36.40 3.02
2044 2782 5.126067 ACATGCAGACACAAAGTTACTCTT 58.874 37.500 0.00 0.00 38.10 2.85
2045 2783 4.708177 ACATGCAGACACAAAGTTACTCT 58.292 39.130 0.00 0.00 0.00 3.24
2046 2784 5.424121 AACATGCAGACACAAAGTTACTC 57.576 39.130 0.00 0.00 0.00 2.59
2257 3039 4.576879 TGGGTGCAAACGTGTATGTAATA 58.423 39.130 0.00 0.00 0.00 0.98
2258 3040 3.413327 TGGGTGCAAACGTGTATGTAAT 58.587 40.909 0.00 0.00 0.00 1.89
2261 3043 1.904287 ATGGGTGCAAACGTGTATGT 58.096 45.000 0.00 0.00 0.00 2.29
2262 3044 3.438781 ACTTATGGGTGCAAACGTGTATG 59.561 43.478 0.00 0.00 0.00 2.39
2263 3045 3.681593 ACTTATGGGTGCAAACGTGTAT 58.318 40.909 0.00 0.00 0.00 2.29
2264 3046 3.128852 ACTTATGGGTGCAAACGTGTA 57.871 42.857 0.00 0.00 0.00 2.90
2318 3110 2.104859 CCGTGTCCTGCAGCATCAG 61.105 63.158 8.66 0.00 0.00 2.90
2347 3139 2.342648 GTCTTGTTCTCCGCCGGT 59.657 61.111 1.63 0.00 0.00 5.28
2846 3663 2.352805 CAGAGCCACCCACTTCCC 59.647 66.667 0.00 0.00 0.00 3.97
3078 3896 7.891561 TGGATTTTCCACGTTCATCTAAAAAT 58.108 30.769 0.00 0.00 42.67 1.82
3091 3909 1.904287 TTCCCACTGGATTTTCCACG 58.096 50.000 0.00 0.00 42.67 4.94
3104 3922 7.065923 GTCATAGTTCTACCAAAGATTTCCCAC 59.934 40.741 0.00 0.00 33.05 4.61
3122 3940 4.298626 TCAAGGGCTGGATAGTCATAGTT 58.701 43.478 0.00 0.00 0.00 2.24
3190 4015 6.586082 GTGTGACATTTATCATTTGGGTGAAC 59.414 38.462 0.00 0.00 0.00 3.18
3193 4018 5.094812 CGTGTGACATTTATCATTTGGGTG 58.905 41.667 0.00 0.00 0.00 4.61
3209 4034 2.538449 AGATTGTTTCGTGTCGTGTGAC 59.462 45.455 0.00 0.00 45.71 3.67
3217 4042 0.110486 AGGCCCAGATTGTTTCGTGT 59.890 50.000 0.00 0.00 0.00 4.49
3220 4049 1.755179 ATCAGGCCCAGATTGTTTCG 58.245 50.000 0.00 0.00 0.00 3.46
3280 4126 7.098477 TGACAAATTTATTTCTGGATGGCAAG 58.902 34.615 0.00 0.00 0.00 4.01
3289 4135 7.354025 TGCAAGCATGACAAATTTATTTCTG 57.646 32.000 0.00 0.00 0.00 3.02
3290 4136 7.658575 AGTTGCAAGCATGACAAATTTATTTCT 59.341 29.630 0.00 0.00 0.00 2.52
3291 4137 7.799784 AGTTGCAAGCATGACAAATTTATTTC 58.200 30.769 0.00 0.00 0.00 2.17
3299 4145 5.261209 ACTTTAGTTGCAAGCATGACAAA 57.739 34.783 0.00 0.00 0.00 2.83
3335 4181 9.562583 GCGATGTTTTTATGGTAAGTTTAATGA 57.437 29.630 0.00 0.00 0.00 2.57
3338 4184 9.915629 ATTGCGATGTTTTTATGGTAAGTTTAA 57.084 25.926 0.00 0.00 0.00 1.52
3343 4189 6.237808 GGCAATTGCGATGTTTTTATGGTAAG 60.238 38.462 23.48 0.00 43.26 2.34
3347 4193 3.931468 TGGCAATTGCGATGTTTTTATGG 59.069 39.130 23.48 0.00 43.26 2.74
3356 4202 2.102749 CCCGTGGCAATTGCGATG 59.897 61.111 23.36 23.36 43.26 3.84
3357 4203 2.361104 ACCCGTGGCAATTGCGAT 60.361 55.556 23.48 2.28 43.26 4.58
3368 4216 3.000819 TAGGACCTGCCACCCGTG 61.001 66.667 3.53 0.00 40.02 4.94
3370 4218 1.838073 AAAGTAGGACCTGCCACCCG 61.838 60.000 3.53 0.00 40.02 5.28
3372 4220 1.073284 TCAAAAGTAGGACCTGCCACC 59.927 52.381 3.53 0.00 40.02 4.61
3376 4224 2.673368 CACGATCAAAAGTAGGACCTGC 59.327 50.000 3.53 1.91 0.00 4.85
3391 4242 2.802816 AGGAATATTCTTGCGCACGATC 59.197 45.455 17.97 11.62 0.00 3.69
3396 4247 4.119862 GTGAGTAGGAATATTCTTGCGCA 58.880 43.478 15.42 15.42 0.00 6.09
3398 4249 5.460419 GTGAGTGAGTAGGAATATTCTTGCG 59.540 44.000 14.95 0.00 0.00 4.85
3417 4268 5.422214 AAATAGACTTCATTCGGGTGAGT 57.578 39.130 0.00 0.00 0.00 3.41
3418 4269 7.843490 TTAAAATAGACTTCATTCGGGTGAG 57.157 36.000 0.00 0.00 0.00 3.51
3419 4270 7.120138 GGTTTAAAATAGACTTCATTCGGGTGA 59.880 37.037 0.00 0.00 0.00 4.02
3420 4271 7.120726 AGGTTTAAAATAGACTTCATTCGGGTG 59.879 37.037 0.00 0.00 0.00 4.61
3421 4272 7.173032 AGGTTTAAAATAGACTTCATTCGGGT 58.827 34.615 0.00 0.00 0.00 5.28
3422 4273 7.625828 AGGTTTAAAATAGACTTCATTCGGG 57.374 36.000 0.00 0.00 0.00 5.14
3423 4274 8.726988 TCAAGGTTTAAAATAGACTTCATTCGG 58.273 33.333 0.00 0.00 0.00 4.30
3695 4555 1.553690 GCAACCTCCTAGGACCAGCA 61.554 60.000 7.62 0.00 37.67 4.41
3698 4558 1.987855 CCGCAACCTCCTAGGACCA 60.988 63.158 7.62 0.00 37.67 4.02
3746 4606 5.335583 GCGGTTATATCATGGCTAATGCAAA 60.336 40.000 0.00 0.00 41.91 3.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.