Multiple sequence alignment - TraesCS7A01G188000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G188000 chr7A 100.000 4047 0 0 1 4047 143852835 143848789 0.000000e+00 7474.0
1 TraesCS7A01G188000 chr7A 92.530 415 28 3 1728 2142 55191664 55191253 3.480000e-165 592.0
2 TraesCS7A01G188000 chr7A 91.892 111 5 4 3132 3240 143849596 143849704 7.010000e-33 152.0
3 TraesCS7A01G188000 chr7A 86.822 129 15 1 106 232 8262195 8262067 4.220000e-30 143.0
4 TraesCS7A01G188000 chr7A 92.000 75 5 1 536 610 686044069 686043996 1.990000e-18 104.0
5 TraesCS7A01G188000 chr7A 89.474 76 6 1 958 1033 179894731 179894658 1.200000e-15 95.3
6 TraesCS7A01G188000 chr4D 96.505 2661 80 6 121 2778 143864307 143866957 0.000000e+00 4386.0
7 TraesCS7A01G188000 chr4D 95.463 529 18 3 2590 3114 143866959 143867485 0.000000e+00 839.0
8 TraesCS7A01G188000 chr4D 88.123 261 31 0 2268 2528 15928919 15928659 1.090000e-80 311.0
9 TraesCS7A01G188000 chr4D 95.506 178 7 1 3871 4047 355105876 355106053 2.380000e-72 283.0
10 TraesCS7A01G188000 chr4D 95.000 120 6 0 1 120 143862955 143863074 5.340000e-44 189.0
11 TraesCS7A01G188000 chr4D 100.000 40 0 0 3104 3143 143867491 143867530 1.560000e-09 75.0
12 TraesCS7A01G188000 chr2D 95.227 2472 100 8 654 3114 19172512 19170048 0.000000e+00 3895.0
13 TraesCS7A01G188000 chr2D 84.448 643 67 20 3233 3870 592922992 592923606 1.610000e-168 603.0
14 TraesCS7A01G188000 chr2D 83.746 646 71 19 3233 3873 532375298 532374682 7.540000e-162 580.0
15 TraesCS7A01G188000 chr2D 89.951 408 30 4 1325 1732 524272433 524272829 2.160000e-142 516.0
16 TraesCS7A01G188000 chr2D 90.551 381 34 2 3494 3872 558863399 558863779 1.680000e-138 503.0
17 TraesCS7A01G188000 chr2D 96.067 178 6 1 3871 4047 368026043 368025866 5.120000e-74 289.0
18 TraesCS7A01G188000 chr2D 95.506 178 7 1 3871 4047 139333858 139333681 2.380000e-72 283.0
19 TraesCS7A01G188000 chr2D 95.506 178 7 1 3871 4047 496922156 496921979 2.380000e-72 283.0
20 TraesCS7A01G188000 chr2D 97.872 94 1 1 3137 3229 174430838 174430745 1.160000e-35 161.0
21 TraesCS7A01G188000 chr2D 94.118 102 5 1 3130 3230 612499188 612499289 1.950000e-33 154.0
22 TraesCS7A01G188000 chr2D 95.789 95 3 1 3136 3229 367218091 367218185 7.010000e-33 152.0
23 TraesCS7A01G188000 chr1A 94.232 2011 93 6 1124 3114 592397173 592399180 0.000000e+00 3049.0
24 TraesCS7A01G188000 chr1A 91.207 671 41 9 3228 3882 592399227 592399895 0.000000e+00 896.0
25 TraesCS7A01G188000 chr1A 88.153 574 42 10 249 807 278489629 278489067 0.000000e+00 660.0
26 TraesCS7A01G188000 chr1A 100.000 86 0 0 3143 3228 547903012 547903097 4.190000e-35 159.0
27 TraesCS7A01G188000 chr1A 86.154 130 18 0 637 766 377970867 377970996 1.520000e-29 141.0
28 TraesCS7A01G188000 chr1A 88.889 72 7 1 535 606 379884016 379883946 2.000000e-13 87.9
29 TraesCS7A01G188000 chr1A 88.406 69 8 0 164 232 278490027 278489959 2.590000e-12 84.2
30 TraesCS7A01G188000 chr1A 86.842 76 8 1 958 1033 300589532 300589459 2.590000e-12 84.2
31 TraesCS7A01G188000 chr1A 86.486 74 10 0 537 610 230156572 230156645 9.320000e-12 82.4
32 TraesCS7A01G188000 chr1A 100.000 40 0 0 3104 3143 592399186 592399225 1.560000e-09 75.0
33 TraesCS7A01G188000 chr7D 92.591 2119 142 7 1004 3114 53352437 53350326 0.000000e+00 3029.0
34 TraesCS7A01G188000 chr7D 88.491 643 71 3 3229 3871 53350278 53349639 0.000000e+00 774.0
35 TraesCS7A01G188000 chr7D 83.204 643 75 20 3233 3870 485649926 485649312 3.530000e-155 558.0
36 TraesCS7A01G188000 chr7D 95.506 178 7 1 3871 4047 266734576 266734399 2.380000e-72 283.0
37 TraesCS7A01G188000 chr7D 94.624 93 2 3 3138 3228 318486503 318486594 1.520000e-29 141.0
38 TraesCS7A01G188000 chr7D 93.548 62 4 0 811 872 53352899 53352838 4.310000e-15 93.5
39 TraesCS7A01G188000 chr6D 93.103 696 44 3 1034 1729 195979196 195979887 0.000000e+00 1016.0
40 TraesCS7A01G188000 chr6D 93.372 513 31 1 1728 2237 195980760 195981272 0.000000e+00 756.0
41 TraesCS7A01G188000 chr6D 91.005 567 39 7 2565 3124 273135742 273136303 0.000000e+00 754.0
42 TraesCS7A01G188000 chr6D 91.187 556 42 5 2565 3114 195981625 195982179 0.000000e+00 749.0
43 TraesCS7A01G188000 chr6D 88.057 561 51 5 1998 2557 273134406 273134951 0.000000e+00 651.0
44 TraesCS7A01G188000 chr6D 98.837 86 1 0 3143 3228 367864199 367864114 1.950000e-33 154.0
45 TraesCS7A01G188000 chr6D 95.699 93 2 2 3138 3228 155146773 155146865 9.060000e-32 148.0
46 TraesCS7A01G188000 chr6D 94.845 97 2 2 3135 3228 470724270 470724174 9.060000e-32 148.0
47 TraesCS7A01G188000 chr6D 93.069 101 5 2 3140 3239 391740571 391740670 3.260000e-31 147.0
48 TraesCS7A01G188000 chr6D 85.827 127 10 5 413 532 301129595 301129720 1.180000e-25 128.0
49 TraesCS7A01G188000 chr6D 85.526 76 11 0 535 610 2478836 2478911 3.350000e-11 80.5
50 TraesCS7A01G188000 chr6D 90.385 52 5 0 1118 1169 343674271 343674220 7.260000e-08 69.4
51 TraesCS7A01G188000 chr5D 85.800 831 81 13 1728 2558 428135517 428136310 0.000000e+00 846.0
52 TraesCS7A01G188000 chr5D 90.374 561 43 5 2565 3114 428149678 428150238 0.000000e+00 726.0
53 TraesCS7A01G188000 chr5D 85.023 661 74 14 3229 3871 428150286 428150939 0.000000e+00 649.0
54 TraesCS7A01G188000 chr5D 91.912 408 32 1 1325 1732 38055807 38055401 1.630000e-158 569.0
55 TraesCS7A01G188000 chr5D 89.974 389 35 4 3484 3870 437726001 437725615 2.170000e-137 499.0
56 TraesCS7A01G188000 chr5D 89.565 345 30 6 2797 3137 545796817 545797159 2.230000e-117 433.0
57 TraesCS7A01G188000 chr5D 95.506 178 7 1 3871 4047 554333833 554334010 2.380000e-72 283.0
58 TraesCS7A01G188000 chr5D 89.076 119 7 6 3115 3228 275419758 275419641 4.220000e-30 143.0
59 TraesCS7A01G188000 chr5D 90.090 111 8 2 3144 3251 430647626 430647516 1.520000e-29 141.0
60 TraesCS7A01G188000 chr5D 95.652 46 2 0 565 610 330544043 330544088 1.560000e-09 75.0
61 TraesCS7A01G188000 chr1D 85.171 789 74 23 1787 2557 58088228 58088991 0.000000e+00 769.0
62 TraesCS7A01G188000 chr1D 86.775 552 43 13 2565 3111 465263626 465264152 4.510000e-164 588.0
63 TraesCS7A01G188000 chr1D 92.647 408 29 1 1325 1732 418771755 418771349 1.620000e-163 586.0
64 TraesCS7A01G188000 chr1D 95.506 178 7 1 3871 4047 187348073 187348250 2.380000e-72 283.0
65 TraesCS7A01G188000 chr1D 94.898 98 2 3 3142 3237 107173590 107173686 2.520000e-32 150.0
66 TraesCS7A01G188000 chr1D 86.486 74 10 0 537 610 166832752 166832679 9.320000e-12 82.4
67 TraesCS7A01G188000 chr1B 85.290 775 68 19 1787 2557 52442842 52443574 0.000000e+00 758.0
68 TraesCS7A01G188000 chr1B 93.556 419 27 0 1728 2146 6018227 6018645 3.430000e-175 625.0
69 TraesCS7A01G188000 chr1B 91.932 409 32 1 1325 1733 151147176 151146769 4.540000e-159 571.0
70 TraesCS7A01G188000 chr1B 91.781 73 6 0 958 1030 598362873 598362945 7.160000e-18 102.0
71 TraesCS7A01G188000 chr1B 94.737 57 3 0 176 232 656075630 656075574 5.570000e-14 89.8
72 TraesCS7A01G188000 chr6B 86.970 660 48 16 3228 3870 68234060 68234698 0.000000e+00 708.0
73 TraesCS7A01G188000 chr6B 94.915 59 3 0 976 1034 41243531 41243589 4.310000e-15 93.5
74 TraesCS7A01G188000 chr6B 94.118 51 3 0 715 765 83572618 83572568 1.210000e-10 78.7
75 TraesCS7A01G188000 chr5A 89.024 574 37 9 249 807 219059375 219058813 0.000000e+00 688.0
76 TraesCS7A01G188000 chr5A 87.916 571 39 12 249 804 193892094 193892649 0.000000e+00 645.0
77 TraesCS7A01G188000 chr5A 91.304 69 6 0 164 232 219059773 219059705 1.200000e-15 95.3
78 TraesCS7A01G188000 chr5A 92.063 63 5 0 972 1034 75780512 75780450 5.570000e-14 89.8
79 TraesCS7A01G188000 chr5A 90.164 61 6 0 973 1033 83031122 83031062 3.350000e-11 80.5
80 TraesCS7A01G188000 chr7B 86.804 629 59 13 3228 3840 684166282 684166902 0.000000e+00 680.0
81 TraesCS7A01G188000 chr7B 91.667 108 5 4 3137 3241 456917815 456917921 3.260000e-31 147.0
82 TraesCS7A01G188000 chr7B 90.991 111 4 5 3120 3229 538846857 538846962 1.170000e-30 145.0
83 TraesCS7A01G188000 chr7B 95.833 48 2 0 715 762 158080677 158080724 1.210000e-10 78.7
84 TraesCS7A01G188000 chr3A 88.676 574 39 9 249 807 511044796 511045358 0.000000e+00 676.0
85 TraesCS7A01G188000 chr3A 92.857 70 5 0 953 1022 532584757 532584826 7.160000e-18 102.0
86 TraesCS7A01G188000 chr3A 88.158 76 7 1 958 1033 42399868 42399795 5.570000e-14 89.8
87 TraesCS7A01G188000 chr3A 89.855 69 7 0 164 232 511044398 511044466 5.570000e-14 89.8
88 TraesCS7A01G188000 chr6A 88.266 571 41 9 249 804 390568293 390568852 0.000000e+00 660.0
89 TraesCS7A01G188000 chr6A 91.451 386 31 2 3486 3870 601563775 601563391 2.770000e-146 529.0
90 TraesCS7A01G188000 chr6A 89.926 407 32 5 1326 1732 306409943 306410340 2.160000e-142 516.0
91 TraesCS7A01G188000 chr6A 95.789 95 2 2 3143 3236 433968925 433968832 7.010000e-33 152.0
92 TraesCS7A01G188000 chr6A 93.204 103 3 4 3131 3230 433968825 433968926 9.060000e-32 148.0
93 TraesCS7A01G188000 chr6A 91.304 69 6 0 164 232 390567895 390567963 1.200000e-15 95.3
94 TraesCS7A01G188000 chr6A 84.932 73 9 1 958 1030 496087394 496087464 5.610000e-09 73.1
95 TraesCS7A01G188000 chr6A 93.023 43 3 0 992 1034 62449784 62449742 3.380000e-06 63.9
96 TraesCS7A01G188000 chr5B 88.910 532 49 8 3344 3872 374782295 374782819 0.000000e+00 647.0
97 TraesCS7A01G188000 chr5B 95.745 94 4 0 3135 3228 544620348 544620255 7.010000e-33 152.0
98 TraesCS7A01G188000 chr5B 100.000 39 0 0 1 39 65597014 65596976 5.610000e-09 73.1
99 TraesCS7A01G188000 chr3B 87.108 574 52 11 249 807 291827648 291828214 7.380000e-177 630.0
100 TraesCS7A01G188000 chr3B 92.927 410 27 2 1728 2137 324065461 324065868 2.690000e-166 595.0
101 TraesCS7A01G188000 chr3B 89.976 409 40 1 1325 1733 47106612 47107019 9.960000e-146 527.0
102 TraesCS7A01G188000 chr3B 87.879 132 8 8 3115 3239 71403629 71403759 9.060000e-32 148.0
103 TraesCS7A01G188000 chr3B 91.304 69 6 0 164 232 31400585 31400653 1.200000e-15 95.3
104 TraesCS7A01G188000 chr3B 100.000 39 0 0 1 39 291826818 291826856 5.610000e-09 73.1
105 TraesCS7A01G188000 chr2B 91.220 410 35 1 1324 1733 289212810 289213218 1.270000e-154 556.0
106 TraesCS7A01G188000 chr2B 86.437 494 35 16 1787 2276 343990020 343990485 2.790000e-141 512.0
107 TraesCS7A01G188000 chr2B 92.733 344 22 2 2805 3145 785630399 785630056 1.010000e-135 494.0
108 TraesCS7A01G188000 chr2B 97.802 91 2 0 3138 3228 182712506 182712416 1.510000e-34 158.0
109 TraesCS7A01G188000 chr3D 90.206 388 33 5 3486 3870 172529265 172528880 6.040000e-138 501.0
110 TraesCS7A01G188000 chr3D 95.506 178 7 1 3871 4047 371931960 371931783 2.380000e-72 283.0
111 TraesCS7A01G188000 chr3D 95.506 178 7 1 3871 4047 385718469 385718646 2.380000e-72 283.0
112 TraesCS7A01G188000 chr3D 98.824 85 1 0 3144 3228 135686402 135686486 7.010000e-33 152.0
113 TraesCS7A01G188000 chr3D 95.789 95 2 2 3144 3236 439870614 439870520 7.010000e-33 152.0
114 TraesCS7A01G188000 chr3D 94.845 97 3 2 3137 3232 36246265 36246170 2.520000e-32 150.0
115 TraesCS7A01G188000 chr3D 93.269 104 4 3 3129 3230 56336864 56336966 2.520000e-32 150.0
116 TraesCS7A01G188000 chr4A 87.500 288 31 5 2268 2555 584672140 584672422 1.080000e-85 327.0
117 TraesCS7A01G188000 chrUn 97.753 89 2 0 3143 3231 356159591 356159679 1.950000e-33 154.0
118 TraesCS7A01G188000 chrUn 95.745 94 3 1 3136 3228 17061863 17061956 2.520000e-32 150.0
119 TraesCS7A01G188000 chrUn 96.703 91 2 1 3139 3228 94636253 94636343 2.520000e-32 150.0
120 TraesCS7A01G188000 chrUn 94.845 97 4 1 3136 3231 394816491 394816395 2.520000e-32 150.0
121 TraesCS7A01G188000 chrUn 97.701 87 1 1 3142 3228 88217946 88217861 9.060000e-32 148.0
122 TraesCS7A01G188000 chrUn 94.737 95 4 1 3135 3228 314912900 314912806 3.260000e-31 147.0
123 TraesCS7A01G188000 chrUn 94.737 95 4 1 3135 3228 350108570 350108664 3.260000e-31 147.0
124 TraesCS7A01G188000 chrUn 93.814 97 4 2 3134 3228 15864355 15864259 1.170000e-30 145.0
125 TraesCS7A01G188000 chrUn 96.552 87 3 0 3143 3229 356159677 356159591 1.170000e-30 145.0
126 TraesCS7A01G188000 chrUn 90.826 109 7 2 3128 3233 6054499 6054391 4.220000e-30 143.0
127 TraesCS7A01G188000 chrUn 89.720 107 7 4 3129 3233 74189360 74189464 2.540000e-27 134.0
128 TraesCS7A01G188000 chrUn 94.915 59 3 0 976 1034 337810119 337810061 4.310000e-15 93.5
129 TraesCS7A01G188000 chrUn 89.041 73 6 2 535 606 86842248 86842319 5.570000e-14 89.8
130 TraesCS7A01G188000 chrUn 86.486 74 10 0 537 610 5347350 5347423 9.320000e-12 82.4
131 TraesCS7A01G188000 chr2A 94.118 102 3 3 3140 3240 18339608 18339509 7.010000e-33 152.0
132 TraesCS7A01G188000 chr2A 86.885 122 14 2 645 765 21838936 21838816 7.060000e-28 135.0
133 TraesCS7A01G188000 chr2A 84.127 126 18 2 642 766 577726885 577726761 1.980000e-23 121.0
134 TraesCS7A01G188000 chr2A 84.444 90 12 2 535 623 74143745 74143657 2.000000e-13 87.9
135 TraesCS7A01G188000 chr2A 87.671 73 7 1 958 1030 90462757 90462687 2.590000e-12 84.2
136 TraesCS7A01G188000 chr4B 82.895 76 11 1 958 1033 614430102 614430029 2.610000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G188000 chr7A 143848789 143852835 4046 True 7474.000000 7474 100.000000 1 4047 1 chr7A.!!$R3 4046
1 TraesCS7A01G188000 chr4D 143862955 143867530 4575 False 1372.250000 4386 96.742000 1 3143 4 chr4D.!!$F2 3142
2 TraesCS7A01G188000 chr2D 19170048 19172512 2464 True 3895.000000 3895 95.227000 654 3114 1 chr2D.!!$R1 2460
3 TraesCS7A01G188000 chr2D 592922992 592923606 614 False 603.000000 603 84.448000 3233 3870 1 chr2D.!!$F4 637
4 TraesCS7A01G188000 chr2D 532374682 532375298 616 True 580.000000 580 83.746000 3233 3873 1 chr2D.!!$R6 640
5 TraesCS7A01G188000 chr1A 592397173 592399895 2722 False 1340.000000 3049 95.146333 1124 3882 3 chr1A.!!$F4 2758
6 TraesCS7A01G188000 chr1A 278489067 278490027 960 True 372.100000 660 88.279500 164 807 2 chr1A.!!$R3 643
7 TraesCS7A01G188000 chr7D 53349639 53352899 3260 True 1298.833333 3029 91.543333 811 3871 3 chr7D.!!$R3 3060
8 TraesCS7A01G188000 chr7D 485649312 485649926 614 True 558.000000 558 83.204000 3233 3870 1 chr7D.!!$R2 637
9 TraesCS7A01G188000 chr6D 195979196 195982179 2983 False 840.333333 1016 92.554000 1034 3114 3 chr6D.!!$F5 2080
10 TraesCS7A01G188000 chr6D 273134406 273136303 1897 False 702.500000 754 89.531000 1998 3124 2 chr6D.!!$F6 1126
11 TraesCS7A01G188000 chr5D 428135517 428136310 793 False 846.000000 846 85.800000 1728 2558 1 chr5D.!!$F2 830
12 TraesCS7A01G188000 chr5D 428149678 428150939 1261 False 687.500000 726 87.698500 2565 3871 2 chr5D.!!$F5 1306
13 TraesCS7A01G188000 chr1D 58088228 58088991 763 False 769.000000 769 85.171000 1787 2557 1 chr1D.!!$F1 770
14 TraesCS7A01G188000 chr1D 465263626 465264152 526 False 588.000000 588 86.775000 2565 3111 1 chr1D.!!$F4 546
15 TraesCS7A01G188000 chr1B 52442842 52443574 732 False 758.000000 758 85.290000 1787 2557 1 chr1B.!!$F2 770
16 TraesCS7A01G188000 chr6B 68234060 68234698 638 False 708.000000 708 86.970000 3228 3870 1 chr6B.!!$F2 642
17 TraesCS7A01G188000 chr5A 193892094 193892649 555 False 645.000000 645 87.916000 249 804 1 chr5A.!!$F1 555
18 TraesCS7A01G188000 chr5A 219058813 219059773 960 True 391.650000 688 90.164000 164 807 2 chr5A.!!$R3 643
19 TraesCS7A01G188000 chr7B 684166282 684166902 620 False 680.000000 680 86.804000 3228 3840 1 chr7B.!!$F4 612
20 TraesCS7A01G188000 chr3A 511044398 511045358 960 False 382.900000 676 89.265500 164 807 2 chr3A.!!$F2 643
21 TraesCS7A01G188000 chr6A 390567895 390568852 957 False 377.650000 660 89.785000 164 804 2 chr6A.!!$F4 640
22 TraesCS7A01G188000 chr5B 374782295 374782819 524 False 647.000000 647 88.910000 3344 3872 1 chr5B.!!$F1 528
23 TraesCS7A01G188000 chr3B 291826818 291828214 1396 False 351.550000 630 93.554000 1 807 2 chr3B.!!$F5 806

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
203 1703 0.842030 TGCAGGTGAGGAAGGTGGAT 60.842 55.000 0.0 0.0 0.0 3.41 F
1243 3372 0.036388 GATCTTTGTCGGGGTGCTCA 60.036 55.000 0.0 0.0 0.0 4.26 F
1545 3674 1.411977 CATGTTTCCTGTTTGCACCCA 59.588 47.619 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2100 5113 2.579873 ACAGTTTGAGAACAGCAGCAT 58.420 42.857 0.0 0.0 38.26 3.79 R
2574 6404 0.730265 TCGCACTTGACCACAACAAC 59.270 50.000 0.0 0.0 32.27 3.32 R
3407 7460 1.043022 CTTTTTCCAGCCCACTTGCT 58.957 50.000 0.0 0.0 44.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 339 4.468769 TACTCCGTCCGCCCCCAT 62.469 66.667 0.00 0.00 0.00 4.00
143 1643 6.798482 TGATATGCAGATTTGATTTGTGGAC 58.202 36.000 0.00 0.00 0.00 4.02
146 1646 5.471556 TGCAGATTTGATTTGTGGACATT 57.528 34.783 0.00 0.00 0.00 2.71
203 1703 0.842030 TGCAGGTGAGGAAGGTGGAT 60.842 55.000 0.00 0.00 0.00 3.41
394 2210 5.263968 TGCCTCTGAATTAGTAGTGCTAC 57.736 43.478 1.33 1.33 36.35 3.58
425 2241 3.643792 AGGTCACAAGAGTCTGTAGCTTT 59.356 43.478 0.00 0.00 0.00 3.51
493 2318 3.183793 TCGTACTGAGCATGCATCAAT 57.816 42.857 21.98 12.74 0.00 2.57
552 2407 2.906691 TGTTTGGTTTGATTGCTGGG 57.093 45.000 0.00 0.00 0.00 4.45
657 2512 1.209504 GTTGTGGCAGCTGGGATACTA 59.790 52.381 17.12 0.00 0.00 1.82
700 2555 4.186926 TCTACTCATGTTCATGCTGCTTC 58.813 43.478 7.80 0.00 0.00 3.86
713 2572 7.255491 TCATGCTGCTTCTTAAGTGATTATG 57.745 36.000 1.63 1.49 0.00 1.90
868 2727 7.914427 TGCTTATATCTTCCTTCTGAACCTA 57.086 36.000 0.00 0.00 0.00 3.08
881 2740 4.072131 TCTGAACCTACAAACCTTGATGC 58.928 43.478 0.00 0.00 0.00 3.91
945 2804 7.254852 ACCAACTTTGTTAATTACACACACAG 58.745 34.615 1.97 1.97 36.21 3.66
1116 3244 7.121911 GTCCGAAACAAAAGTTAGTGAGTAAC 58.878 38.462 1.96 1.96 41.39 2.50
1209 3338 1.189752 CAGCTGCTGACCTCTTCCTA 58.810 55.000 24.88 0.00 32.44 2.94
1243 3372 0.036388 GATCTTTGTCGGGGTGCTCA 60.036 55.000 0.00 0.00 0.00 4.26
1421 3550 6.620678 TGCTAAATTCTGTTCATTAAGTGGC 58.379 36.000 0.00 0.00 0.00 5.01
1452 3581 4.825546 ATTTAGCAATCTTGATGCCTCG 57.174 40.909 0.00 0.00 44.91 4.63
1545 3674 1.411977 CATGTTTCCTGTTTGCACCCA 59.588 47.619 0.00 0.00 0.00 4.51
1552 3681 1.411977 CCTGTTTGCACCCATTTGTCA 59.588 47.619 0.00 0.00 0.00 3.58
1634 3763 3.178046 TGTGGAATACCTTGGAGCACTA 58.822 45.455 0.00 0.00 37.04 2.74
1914 4923 4.714632 TGCTGCTGTTAAGTTAGGACTTT 58.285 39.130 0.00 0.00 43.48 2.66
1980 4992 3.261897 AGTGTAGGACTTGCTGCTATTGT 59.738 43.478 0.00 0.00 0.00 2.71
2020 5033 7.946207 TGTATTTTCCAAAGTTTGATAGCACA 58.054 30.769 17.33 10.13 0.00 4.57
2100 5113 5.412594 GGAGTTGATGCTGTTCTAATTGACA 59.587 40.000 0.00 0.00 0.00 3.58
2146 5172 4.397420 TGTCATTAACCTGATGTTGCTGT 58.603 39.130 0.00 0.00 37.83 4.40
2372 5419 3.650950 GCTGGAGGCCACCTTCCA 61.651 66.667 20.77 15.53 31.76 3.53
2520 5567 3.120199 CGCTCAAGTATTTTGTCCAGGTG 60.120 47.826 0.00 0.00 0.00 4.00
2546 5593 2.103941 CTGTCTAATCCTTCCTCCCTGC 59.896 54.545 0.00 0.00 0.00 4.85
2583 6413 2.289274 TGTAGCACATTCGTTGTTGTGG 59.711 45.455 5.33 0.00 42.72 4.17
2779 6806 1.656652 ATGCATACGGCTTGTGTCTC 58.343 50.000 0.00 0.00 45.15 3.36
2800 6827 0.036306 CTGCTCCCTTACCCGTTGTT 59.964 55.000 0.00 0.00 0.00 2.83
2803 6830 1.271217 GCTCCCTTACCCGTTGTTCTT 60.271 52.381 0.00 0.00 0.00 2.52
2809 6838 4.081309 CCCTTACCCGTTGTTCTTCATCTA 60.081 45.833 0.00 0.00 0.00 1.98
2923 6956 7.885297 TGTTAAATCTAAAGTTCTGCAGCAAT 58.115 30.769 9.47 0.00 0.00 3.56
3043 7077 2.320681 AGTTGGGTGTACAGGAGCTA 57.679 50.000 0.00 0.00 0.00 3.32
3052 7086 4.278919 GGTGTACAGGAGCTATAGGAAGAC 59.721 50.000 0.00 0.00 0.00 3.01
3076 7110 5.865552 CGAATCCCGAAGAAAAACTACACTA 59.134 40.000 0.00 0.00 41.76 2.74
3093 7128 5.176407 ACACTAAACAATGCGTTTTAGCA 57.824 34.783 9.18 0.00 45.79 3.49
3152 7203 9.703677 ATTCTATAGCTAAATACTACTCCCTCC 57.296 37.037 0.00 0.00 0.00 4.30
3153 7204 7.337167 TCTATAGCTAAATACTACTCCCTCCG 58.663 42.308 0.00 0.00 0.00 4.63
3154 7205 4.181799 AGCTAAATACTACTCCCTCCGT 57.818 45.455 0.00 0.00 0.00 4.69
3155 7206 4.544683 AGCTAAATACTACTCCCTCCGTT 58.455 43.478 0.00 0.00 0.00 4.44
3156 7207 4.583907 AGCTAAATACTACTCCCTCCGTTC 59.416 45.833 0.00 0.00 0.00 3.95
3157 7208 4.261952 GCTAAATACTACTCCCTCCGTTCC 60.262 50.000 0.00 0.00 0.00 3.62
3158 7209 3.393426 AATACTACTCCCTCCGTTCCA 57.607 47.619 0.00 0.00 0.00 3.53
3159 7210 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
3160 7211 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
3161 7212 2.332117 ACTACTCCCTCCGTTCCAAAA 58.668 47.619 0.00 0.00 0.00 2.44
3162 7213 2.910977 ACTACTCCCTCCGTTCCAAAAT 59.089 45.455 0.00 0.00 0.00 1.82
3163 7214 4.098894 ACTACTCCCTCCGTTCCAAAATA 58.901 43.478 0.00 0.00 0.00 1.40
3164 7215 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3165 7216 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3166 7217 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3167 7218 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3168 7219 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3169 7220 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3170 7221 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3171 7222 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3172 7223 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3173 7224 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3174 7225 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3175 7226 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3176 7227 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3177 7228 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3178 7229 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3179 7230 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3180 7231 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3181 7232 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3182 7233 7.312899 CAAAATAGATGACCCAACTTTGTACC 58.687 38.462 0.00 0.00 0.00 3.34
3183 7234 5.772393 ATAGATGACCCAACTTTGTACCA 57.228 39.130 0.00 0.00 0.00 3.25
3184 7235 4.447138 AGATGACCCAACTTTGTACCAA 57.553 40.909 0.00 0.00 0.00 3.67
3185 7236 4.398319 AGATGACCCAACTTTGTACCAAG 58.602 43.478 5.19 5.19 0.00 3.61
3186 7237 3.655615 TGACCCAACTTTGTACCAAGT 57.344 42.857 6.52 6.52 0.00 3.16
3187 7238 3.970842 TGACCCAACTTTGTACCAAGTT 58.029 40.909 17.04 17.04 39.61 2.66
3188 7239 5.113446 TGACCCAACTTTGTACCAAGTTA 57.887 39.130 20.99 6.37 37.15 2.24
3189 7240 5.127491 TGACCCAACTTTGTACCAAGTTAG 58.873 41.667 20.99 17.64 37.15 2.34
3190 7241 5.120054 ACCCAACTTTGTACCAAGTTAGT 57.880 39.130 20.99 18.15 37.15 2.24
3191 7242 6.126825 TGACCCAACTTTGTACCAAGTTAGTA 60.127 38.462 20.99 10.25 37.15 1.82
3192 7243 6.057533 ACCCAACTTTGTACCAAGTTAGTAC 58.942 40.000 20.99 4.82 37.15 2.73
3193 7244 6.056884 CCCAACTTTGTACCAAGTTAGTACA 58.943 40.000 20.99 9.83 46.27 2.90
3205 7256 6.877611 CAAGTTAGTACAAAGTTGGGTCAT 57.122 37.500 0.00 0.00 36.54 3.06
3206 7257 6.899114 CAAGTTAGTACAAAGTTGGGTCATC 58.101 40.000 0.00 0.00 36.54 2.92
3207 7258 6.435292 AGTTAGTACAAAGTTGGGTCATCT 57.565 37.500 0.00 0.00 0.00 2.90
3208 7259 7.549147 AGTTAGTACAAAGTTGGGTCATCTA 57.451 36.000 0.00 0.00 0.00 1.98
3209 7260 8.147244 AGTTAGTACAAAGTTGGGTCATCTAT 57.853 34.615 0.00 0.00 0.00 1.98
3210 7261 8.603304 AGTTAGTACAAAGTTGGGTCATCTATT 58.397 33.333 0.00 0.00 0.00 1.73
3211 7262 9.227777 GTTAGTACAAAGTTGGGTCATCTATTT 57.772 33.333 0.00 0.00 0.00 1.40
3212 7263 9.802039 TTAGTACAAAGTTGGGTCATCTATTTT 57.198 29.630 0.00 0.00 0.00 1.82
3213 7264 8.110860 AGTACAAAGTTGGGTCATCTATTTTG 57.889 34.615 0.00 0.00 0.00 2.44
3214 7265 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3215 7266 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3216 7267 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3217 7268 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3218 7269 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
3219 7270 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3220 7271 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3221 7272 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3222 7273 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3223 7274 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3224 7275 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3225 7276 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3226 7277 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3521 7579 2.354821 GTCGCTGACCAAACTTGAAAGT 59.645 45.455 0.00 0.00 42.04 2.66
3594 7653 0.404040 TTGGACCGGGCTGAATCTTT 59.596 50.000 7.57 0.00 0.00 2.52
3639 7711 0.322098 ATTTTGCCACGTCGGATCCA 60.322 50.000 13.41 0.00 36.56 3.41
3673 7745 0.668535 GACAGCCAGTGACCAAAACC 59.331 55.000 0.00 0.00 0.00 3.27
3722 7794 2.330231 TTGGTCGTAAACGTCTACGG 57.670 50.000 20.35 3.39 43.82 4.02
3780 7852 2.106511 ACTGCCAGCTTTTGACCTTCTA 59.893 45.455 0.00 0.00 0.00 2.10
3873 7948 7.928307 ATTGACATATTTCTTGTAGTGCACT 57.072 32.000 25.12 25.12 0.00 4.40
3875 7950 7.827819 TGACATATTTCTTGTAGTGCACTAC 57.172 36.000 38.59 38.59 46.78 2.73
3876 7951 7.611770 TGACATATTTCTTGTAGTGCACTACT 58.388 34.615 41.57 29.09 46.74 2.57
3877 7952 7.545615 TGACATATTTCTTGTAGTGCACTACTG 59.454 37.037 41.57 34.54 46.74 2.74
3878 7953 7.386851 ACATATTTCTTGTAGTGCACTACTGT 58.613 34.615 41.57 33.50 46.74 3.55
3879 7954 7.545965 ACATATTTCTTGTAGTGCACTACTGTC 59.454 37.037 41.57 25.47 46.74 3.51
3880 7955 5.531122 TTTCTTGTAGTGCACTACTGTCT 57.469 39.130 41.57 16.55 46.74 3.41
3881 7956 4.505313 TCTTGTAGTGCACTACTGTCTG 57.495 45.455 41.57 29.38 46.74 3.51
3882 7957 3.255888 TCTTGTAGTGCACTACTGTCTGG 59.744 47.826 41.57 28.02 46.74 3.86
3883 7958 1.272490 TGTAGTGCACTACTGTCTGGC 59.728 52.381 41.57 23.35 46.74 4.85
3884 7959 0.895530 TAGTGCACTACTGTCTGGCC 59.104 55.000 22.67 0.00 40.65 5.36
3885 7960 1.121407 AGTGCACTACTGTCTGGCCA 61.121 55.000 20.16 4.71 38.49 5.36
3886 7961 0.951040 GTGCACTACTGTCTGGCCAC 60.951 60.000 10.32 0.00 0.00 5.01
3887 7962 1.371183 GCACTACTGTCTGGCCACA 59.629 57.895 0.00 0.00 0.00 4.17
3888 7963 0.250295 GCACTACTGTCTGGCCACAA 60.250 55.000 0.00 0.00 0.00 3.33
3889 7964 1.800805 CACTACTGTCTGGCCACAAG 58.199 55.000 0.00 1.58 0.00 3.16
3890 7965 0.687354 ACTACTGTCTGGCCACAAGG 59.313 55.000 0.00 0.00 38.23 3.61
3900 7975 3.741476 CCACAAGGCCTTGCGAGC 61.741 66.667 39.52 0.00 44.03 5.03
3901 7976 4.093952 CACAAGGCCTTGCGAGCG 62.094 66.667 39.52 21.62 44.03 5.03
3902 7977 4.626081 ACAAGGCCTTGCGAGCGT 62.626 61.111 39.52 20.45 44.03 5.07
3903 7978 3.357079 CAAGGCCTTGCGAGCGTT 61.357 61.111 31.70 0.00 38.77 4.84
3904 7979 2.594592 AAGGCCTTGCGAGCGTTT 60.595 55.556 19.73 0.00 34.90 3.60
3905 7980 2.617274 AAGGCCTTGCGAGCGTTTC 61.617 57.895 19.73 0.00 34.90 2.78
3917 7992 4.914291 CGTTTCGCCAGGTTTGTC 57.086 55.556 0.00 0.00 0.00 3.18
3918 7993 2.018544 CGTTTCGCCAGGTTTGTCA 58.981 52.632 0.00 0.00 0.00 3.58
3919 7994 0.378962 CGTTTCGCCAGGTTTGTCAA 59.621 50.000 0.00 0.00 0.00 3.18
3920 7995 1.835121 GTTTCGCCAGGTTTGTCAAC 58.165 50.000 0.00 0.00 0.00 3.18
3921 7996 1.133407 GTTTCGCCAGGTTTGTCAACA 59.867 47.619 0.00 0.00 34.15 3.33
3922 7997 1.021202 TTCGCCAGGTTTGTCAACAG 58.979 50.000 0.00 0.00 34.15 3.16
3923 7998 1.008538 CGCCAGGTTTGTCAACAGC 60.009 57.895 0.00 0.00 34.15 4.40
3924 7999 1.363807 GCCAGGTTTGTCAACAGCC 59.636 57.895 0.00 0.00 34.15 4.85
3925 8000 2.041153 CCAGGTTTGTCAACAGCCC 58.959 57.895 0.00 0.00 34.15 5.19
3926 8001 1.463553 CCAGGTTTGTCAACAGCCCC 61.464 60.000 0.00 0.00 34.15 5.80
3927 8002 1.152546 AGGTTTGTCAACAGCCCCC 60.153 57.895 0.00 0.00 34.15 5.40
3928 8003 1.456705 GGTTTGTCAACAGCCCCCA 60.457 57.895 0.00 0.00 34.15 4.96
3929 8004 1.739667 GTTTGTCAACAGCCCCCAC 59.260 57.895 0.00 0.00 32.54 4.61
3930 8005 0.755327 GTTTGTCAACAGCCCCCACT 60.755 55.000 0.00 0.00 32.54 4.00
3931 8006 0.847373 TTTGTCAACAGCCCCCACTA 59.153 50.000 0.00 0.00 0.00 2.74
3932 8007 0.109723 TTGTCAACAGCCCCCACTAC 59.890 55.000 0.00 0.00 0.00 2.73
3933 8008 1.057275 TGTCAACAGCCCCCACTACA 61.057 55.000 0.00 0.00 0.00 2.74
3934 8009 0.328258 GTCAACAGCCCCCACTACAT 59.672 55.000 0.00 0.00 0.00 2.29
3935 8010 0.327924 TCAACAGCCCCCACTACATG 59.672 55.000 0.00 0.00 0.00 3.21
3936 8011 0.038166 CAACAGCCCCCACTACATGT 59.962 55.000 2.69 2.69 0.00 3.21
3937 8012 0.777446 AACAGCCCCCACTACATGTT 59.223 50.000 2.30 0.00 0.00 2.71
3938 8013 0.328258 ACAGCCCCCACTACATGTTC 59.672 55.000 2.30 0.00 0.00 3.18
3939 8014 0.744414 CAGCCCCCACTACATGTTCG 60.744 60.000 2.30 0.00 0.00 3.95
3940 8015 2.112815 GCCCCCACTACATGTTCGC 61.113 63.158 2.30 0.00 0.00 4.70
3941 8016 1.602237 CCCCCACTACATGTTCGCT 59.398 57.895 2.30 0.00 0.00 4.93
3942 8017 0.828022 CCCCCACTACATGTTCGCTA 59.172 55.000 2.30 0.00 0.00 4.26
3943 8018 1.208535 CCCCCACTACATGTTCGCTAA 59.791 52.381 2.30 0.00 0.00 3.09
3944 8019 2.550978 CCCCACTACATGTTCGCTAAG 58.449 52.381 2.30 0.00 0.00 2.18
3945 8020 2.550978 CCCACTACATGTTCGCTAAGG 58.449 52.381 2.30 0.00 0.00 2.69
3946 8021 2.093658 CCCACTACATGTTCGCTAAGGT 60.094 50.000 2.30 0.00 0.00 3.50
3947 8022 2.930040 CCACTACATGTTCGCTAAGGTG 59.070 50.000 2.30 1.49 0.00 4.00
3948 8023 2.930040 CACTACATGTTCGCTAAGGTGG 59.070 50.000 2.30 0.00 0.00 4.61
3949 8024 2.829720 ACTACATGTTCGCTAAGGTGGA 59.170 45.455 2.30 0.00 0.00 4.02
3950 8025 2.094762 ACATGTTCGCTAAGGTGGAC 57.905 50.000 0.00 0.00 32.37 4.02
3951 8026 1.346395 ACATGTTCGCTAAGGTGGACA 59.654 47.619 0.00 0.00 44.40 4.02
3953 8028 2.380084 TGTTCGCTAAGGTGGACATC 57.620 50.000 0.00 0.00 36.62 3.06
3954 8029 1.621317 TGTTCGCTAAGGTGGACATCA 59.379 47.619 0.00 0.00 36.62 3.07
3955 8030 2.000447 GTTCGCTAAGGTGGACATCAC 59.000 52.381 0.00 0.00 45.34 3.06
3962 8037 4.941609 GTGGACATCACCAGCGAT 57.058 55.556 0.00 0.00 40.85 4.58
3963 8038 2.387309 GTGGACATCACCAGCGATG 58.613 57.895 0.00 0.00 46.78 3.84
3970 8045 1.331756 CATCACCAGCGATGTAAAGGC 59.668 52.381 0.00 0.00 38.38 4.35
3971 8046 0.739462 TCACCAGCGATGTAAAGGCG 60.739 55.000 0.00 0.00 0.00 5.52
3975 8050 3.794270 GCGATGTAAAGGCGCTCA 58.206 55.556 7.64 0.00 46.53 4.26
3976 8051 2.086510 GCGATGTAAAGGCGCTCAA 58.913 52.632 7.64 0.00 46.53 3.02
3977 8052 0.026803 GCGATGTAAAGGCGCTCAAG 59.973 55.000 7.64 0.51 46.53 3.02
3978 8053 1.640428 CGATGTAAAGGCGCTCAAGA 58.360 50.000 7.64 0.00 0.00 3.02
3979 8054 1.999735 CGATGTAAAGGCGCTCAAGAA 59.000 47.619 7.64 0.00 0.00 2.52
3980 8055 2.609459 CGATGTAAAGGCGCTCAAGAAT 59.391 45.455 7.64 0.00 0.00 2.40
3981 8056 3.063997 CGATGTAAAGGCGCTCAAGAATT 59.936 43.478 7.64 0.00 0.00 2.17
3982 8057 4.592179 GATGTAAAGGCGCTCAAGAATTC 58.408 43.478 7.64 0.00 0.00 2.17
3983 8058 3.407698 TGTAAAGGCGCTCAAGAATTCA 58.592 40.909 7.64 0.00 0.00 2.57
3984 8059 3.436704 TGTAAAGGCGCTCAAGAATTCAG 59.563 43.478 7.64 0.00 0.00 3.02
3985 8060 1.457346 AAGGCGCTCAAGAATTCAGG 58.543 50.000 7.64 0.00 0.00 3.86
3986 8061 1.028868 AGGCGCTCAAGAATTCAGGC 61.029 55.000 7.64 5.22 0.00 4.85
3987 8062 1.308069 GGCGCTCAAGAATTCAGGCA 61.308 55.000 7.64 0.00 0.00 4.75
3988 8063 0.737219 GCGCTCAAGAATTCAGGCAT 59.263 50.000 8.44 0.00 0.00 4.40
3989 8064 1.268437 GCGCTCAAGAATTCAGGCATC 60.268 52.381 8.44 0.00 0.00 3.91
3990 8065 1.004185 CGCTCAAGAATTCAGGCATCG 60.004 52.381 8.44 0.32 0.00 3.84
3991 8066 1.268437 GCTCAAGAATTCAGGCATCGC 60.268 52.381 8.44 0.00 0.00 4.58
4002 8077 3.028969 GCATCGCCTGCCAGAATC 58.971 61.111 0.00 0.00 45.66 2.52
4003 8078 1.525535 GCATCGCCTGCCAGAATCT 60.526 57.895 0.00 0.00 45.66 2.40
4004 8079 1.099879 GCATCGCCTGCCAGAATCTT 61.100 55.000 0.00 0.00 45.66 2.40
4005 8080 0.661552 CATCGCCTGCCAGAATCTTG 59.338 55.000 0.00 0.00 0.00 3.02
4006 8081 0.254178 ATCGCCTGCCAGAATCTTGT 59.746 50.000 0.00 0.00 0.00 3.16
4007 8082 0.391661 TCGCCTGCCAGAATCTTGTC 60.392 55.000 0.00 0.00 0.00 3.18
4008 8083 1.699656 CGCCTGCCAGAATCTTGTCG 61.700 60.000 0.00 0.00 0.00 4.35
4009 8084 0.391661 GCCTGCCAGAATCTTGTCGA 60.392 55.000 0.00 0.00 0.00 4.20
4010 8085 1.363744 CCTGCCAGAATCTTGTCGAC 58.636 55.000 9.11 9.11 0.00 4.20
4011 8086 1.338105 CCTGCCAGAATCTTGTCGACA 60.338 52.381 15.76 15.76 0.00 4.35
4012 8087 2.625737 CTGCCAGAATCTTGTCGACAT 58.374 47.619 20.80 3.63 0.00 3.06
4013 8088 2.606725 CTGCCAGAATCTTGTCGACATC 59.393 50.000 20.80 13.87 0.00 3.06
4014 8089 1.936547 GCCAGAATCTTGTCGACATCC 59.063 52.381 20.80 7.03 0.00 3.51
4015 8090 2.677902 GCCAGAATCTTGTCGACATCCA 60.678 50.000 20.80 6.57 0.00 3.41
4016 8091 3.193263 CCAGAATCTTGTCGACATCCAG 58.807 50.000 20.80 14.20 0.00 3.86
4017 8092 3.193263 CAGAATCTTGTCGACATCCAGG 58.807 50.000 20.80 7.74 0.00 4.45
4018 8093 2.169352 AGAATCTTGTCGACATCCAGGG 59.831 50.000 20.80 6.02 0.00 4.45
4019 8094 0.179000 ATCTTGTCGACATCCAGGGC 59.821 55.000 20.80 0.00 0.00 5.19
4020 8095 1.450312 CTTGTCGACATCCAGGGCC 60.450 63.158 20.80 0.00 0.00 5.80
4021 8096 2.184020 CTTGTCGACATCCAGGGCCA 62.184 60.000 20.80 0.00 0.00 5.36
4022 8097 1.773856 TTGTCGACATCCAGGGCCAA 61.774 55.000 20.80 0.00 0.00 4.52
4023 8098 1.224592 GTCGACATCCAGGGCCAAT 59.775 57.895 11.55 0.00 0.00 3.16
4024 8099 0.468226 GTCGACATCCAGGGCCAATA 59.532 55.000 11.55 0.00 0.00 1.90
4025 8100 0.468226 TCGACATCCAGGGCCAATAC 59.532 55.000 6.18 0.00 0.00 1.89
4026 8101 0.180171 CGACATCCAGGGCCAATACA 59.820 55.000 6.18 0.00 0.00 2.29
4027 8102 1.408127 CGACATCCAGGGCCAATACAA 60.408 52.381 6.18 0.00 0.00 2.41
4028 8103 2.301346 GACATCCAGGGCCAATACAAG 58.699 52.381 6.18 0.00 0.00 3.16
4029 8104 1.922447 ACATCCAGGGCCAATACAAGA 59.078 47.619 6.18 0.00 0.00 3.02
4030 8105 2.515429 ACATCCAGGGCCAATACAAGAT 59.485 45.455 6.18 0.00 0.00 2.40
4031 8106 3.721575 ACATCCAGGGCCAATACAAGATA 59.278 43.478 6.18 0.00 0.00 1.98
4032 8107 4.354987 ACATCCAGGGCCAATACAAGATAT 59.645 41.667 6.18 0.00 0.00 1.63
4033 8108 4.371624 TCCAGGGCCAATACAAGATATG 57.628 45.455 6.18 0.00 0.00 1.78
4034 8109 3.074390 TCCAGGGCCAATACAAGATATGG 59.926 47.826 6.18 0.00 36.00 2.74
4035 8110 3.424703 CAGGGCCAATACAAGATATGGG 58.575 50.000 6.18 0.00 33.45 4.00
4036 8111 3.063650 AGGGCCAATACAAGATATGGGT 58.936 45.455 6.18 0.00 33.45 4.51
4037 8112 4.042809 CAGGGCCAATACAAGATATGGGTA 59.957 45.833 6.18 0.00 33.45 3.69
4038 8113 4.289672 AGGGCCAATACAAGATATGGGTAG 59.710 45.833 6.18 0.00 33.45 3.18
4039 8114 4.010349 GGCCAATACAAGATATGGGTAGC 58.990 47.826 0.00 0.00 33.45 3.58
4040 8115 4.506625 GGCCAATACAAGATATGGGTAGCA 60.507 45.833 0.00 0.00 33.45 3.49
4041 8116 5.070001 GCCAATACAAGATATGGGTAGCAA 58.930 41.667 0.00 0.00 33.45 3.91
4042 8117 5.182001 GCCAATACAAGATATGGGTAGCAAG 59.818 44.000 0.00 0.00 33.45 4.01
4043 8118 5.707298 CCAATACAAGATATGGGTAGCAAGG 59.293 44.000 0.00 0.00 0.00 3.61
4044 8119 6.465751 CCAATACAAGATATGGGTAGCAAGGA 60.466 42.308 0.00 0.00 0.00 3.36
4045 8120 4.696479 ACAAGATATGGGTAGCAAGGAG 57.304 45.455 0.00 0.00 0.00 3.69
4046 8121 3.181450 ACAAGATATGGGTAGCAAGGAGC 60.181 47.826 0.00 0.00 46.19 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.223294 CGGAGTACTGGATGAGAACGAC 60.223 54.545 0.00 0.00 0.00 4.34
41 42 1.743958 ACGGAGTACTGGATGAGAACG 59.256 52.381 0.00 0.00 41.94 3.95
71 339 9.845740 TCAAAGCAGCAATAAGGTCTTATATTA 57.154 29.630 3.93 0.00 34.90 0.98
143 1643 6.791887 ATCAGTCAACTACACACAAGAATG 57.208 37.500 0.00 0.00 0.00 2.67
146 1646 7.095229 GCATAAATCAGTCAACTACACACAAGA 60.095 37.037 0.00 0.00 0.00 3.02
203 1703 0.678684 TGGTGACTCGGTCGAGCATA 60.679 55.000 18.79 0.70 45.54 3.14
314 2130 5.535783 TGAATCTTGAAACAATCTCAAGGCA 59.464 36.000 11.53 6.29 46.49 4.75
362 2178 9.770097 CTACTAATTCAGAGGCATCAAAATCTA 57.230 33.333 0.00 0.00 0.00 1.98
394 2210 4.223923 AGACTCTTGTGACCTGGGAATAAG 59.776 45.833 0.00 0.00 0.00 1.73
552 2407 4.705023 AGACCAACCCATACATTTACAAGC 59.295 41.667 0.00 0.00 0.00 4.01
713 2572 9.250624 CATCCTACTAGTAGCAAGAACATAAAC 57.749 37.037 22.39 0.00 31.95 2.01
970 2833 3.563808 CACCATATATTTGACGTGTGGGG 59.436 47.826 0.00 0.00 0.00 4.96
1116 3244 9.941991 CATTTTTGTTCTATCAAATAAGCAACG 57.058 29.630 0.00 0.00 37.20 4.10
1209 3338 5.885465 ACAAAGATCTTCTTGTTCCTCCAT 58.115 37.500 8.78 0.00 36.71 3.41
1229 3358 4.308458 CCGTGAGCACCCCGACAA 62.308 66.667 0.00 0.00 0.00 3.18
1266 3395 3.197983 GGTACTCCAGCACCTCAAATAGT 59.802 47.826 0.00 0.00 0.00 2.12
1421 3550 9.894783 CATCAAGATTGCTAAATATCAAGAAGG 57.105 33.333 0.00 0.00 0.00 3.46
1552 3681 5.032327 TGCATCTTCTCATTGTCAGCTAT 57.968 39.130 0.00 0.00 0.00 2.97
1634 3763 6.872020 TCGAGCAAGCAACTAATTTAGTAAGT 59.128 34.615 9.43 0.00 38.26 2.24
1848 4851 9.986833 GAAAATAGAAGAAAAGAGATGAGAAGC 57.013 33.333 0.00 0.00 0.00 3.86
1914 4923 6.408869 TCTAACAACAGCAATCATCATCAGA 58.591 36.000 0.00 0.00 0.00 3.27
2020 5033 7.287927 TGATCAAGAACTTATCCTAAGGACGAT 59.712 37.037 0.00 0.00 32.98 3.73
2100 5113 2.579873 ACAGTTTGAGAACAGCAGCAT 58.420 42.857 0.00 0.00 38.26 3.79
2146 5172 3.646162 TGCTCCTTCTTCTCCTACAACAA 59.354 43.478 0.00 0.00 0.00 2.83
2520 5567 4.039852 GGGAGGAAGGATTAGACAGATGAC 59.960 50.000 0.00 0.00 0.00 3.06
2546 5593 4.331168 GTGCTACAATACTTGAGCTTCAGG 59.669 45.833 0.00 0.00 35.92 3.86
2574 6404 0.730265 TCGCACTTGACCACAACAAC 59.270 50.000 0.00 0.00 32.27 3.32
2583 6413 3.119291 CTGGATATGAGTCGCACTTGAC 58.881 50.000 0.00 0.00 39.21 3.18
2731 6568 3.694072 CAGTCAAACAGTTCAGGGAACAA 59.306 43.478 11.28 0.00 44.11 2.83
2779 6806 3.310860 AACGGGTAAGGGAGCAGCG 62.311 63.158 0.00 0.00 0.00 5.18
2800 6827 7.661437 AGTGCAAGTTAACACAATAGATGAAGA 59.339 33.333 8.61 0.00 39.30 2.87
2803 6830 6.710295 ACAGTGCAAGTTAACACAATAGATGA 59.290 34.615 8.61 0.00 39.30 2.92
2809 6838 3.705604 GCACAGTGCAAGTTAACACAAT 58.294 40.909 21.22 0.00 44.26 2.71
3043 7077 3.563223 TCTTCGGGATTCGTCTTCCTAT 58.437 45.455 0.00 0.00 40.32 2.57
3052 7086 4.689345 AGTGTAGTTTTTCTTCGGGATTCG 59.311 41.667 0.00 0.00 40.90 3.34
3143 7194 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3144 7195 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3145 7196 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
3146 7197 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
3147 7198 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
3148 7199 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
3149 7200 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
3150 7201 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
3151 7202 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
3152 7203 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
3153 7204 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
3154 7205 6.553100 ACAAAGTTGGGTCATCTATTTTGGAA 59.447 34.615 0.00 0.00 0.00 3.53
3155 7206 6.074648 ACAAAGTTGGGTCATCTATTTTGGA 58.925 36.000 0.00 0.00 0.00 3.53
3156 7207 6.345096 ACAAAGTTGGGTCATCTATTTTGG 57.655 37.500 0.00 0.00 0.00 3.28
3157 7208 7.040062 TGGTACAAAGTTGGGTCATCTATTTTG 60.040 37.037 0.00 0.00 31.92 2.44
3158 7209 7.007723 TGGTACAAAGTTGGGTCATCTATTTT 58.992 34.615 0.00 0.00 31.92 1.82
3159 7210 6.548321 TGGTACAAAGTTGGGTCATCTATTT 58.452 36.000 0.00 0.00 31.92 1.40
3160 7211 6.134535 TGGTACAAAGTTGGGTCATCTATT 57.865 37.500 0.00 0.00 31.92 1.73
3161 7212 5.772393 TGGTACAAAGTTGGGTCATCTAT 57.228 39.130 0.00 0.00 31.92 1.98
3177 7228 6.056884 CCCAACTTTGTACTAACTTGGTACA 58.943 40.000 19.20 12.72 44.93 2.90
3178 7229 6.057533 ACCCAACTTTGTACTAACTTGGTAC 58.942 40.000 19.20 8.19 39.70 3.34
3179 7230 6.126825 TGACCCAACTTTGTACTAACTTGGTA 60.127 38.462 19.20 8.91 0.00 3.25
3180 7231 5.120054 ACCCAACTTTGTACTAACTTGGT 57.880 39.130 19.20 10.23 0.00 3.67
3181 7232 5.127491 TGACCCAACTTTGTACTAACTTGG 58.873 41.667 16.12 16.12 0.00 3.61
3182 7233 6.710744 AGATGACCCAACTTTGTACTAACTTG 59.289 38.462 0.00 0.00 0.00 3.16
3183 7234 6.838382 AGATGACCCAACTTTGTACTAACTT 58.162 36.000 0.00 0.00 0.00 2.66
3184 7235 6.435292 AGATGACCCAACTTTGTACTAACT 57.565 37.500 0.00 0.00 0.00 2.24
3185 7236 8.788325 AATAGATGACCCAACTTTGTACTAAC 57.212 34.615 0.00 0.00 0.00 2.34
3186 7237 9.802039 AAAATAGATGACCCAACTTTGTACTAA 57.198 29.630 0.00 0.00 0.00 2.24
3187 7238 9.226606 CAAAATAGATGACCCAACTTTGTACTA 57.773 33.333 0.00 0.00 0.00 1.82
3188 7239 7.176690 CCAAAATAGATGACCCAACTTTGTACT 59.823 37.037 0.00 0.00 0.00 2.73
3189 7240 7.175990 TCCAAAATAGATGACCCAACTTTGTAC 59.824 37.037 0.00 0.00 0.00 2.90
3190 7241 7.235079 TCCAAAATAGATGACCCAACTTTGTA 58.765 34.615 0.00 0.00 0.00 2.41
3191 7242 6.074648 TCCAAAATAGATGACCCAACTTTGT 58.925 36.000 0.00 0.00 0.00 2.83
3192 7243 6.588719 TCCAAAATAGATGACCCAACTTTG 57.411 37.500 0.00 0.00 0.00 2.77
3193 7244 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
3194 7245 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
3195 7246 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
3196 7247 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
3197 7248 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
3198 7249 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
3199 7250 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
3200 7251 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
3201 7252 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
3202 7253 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3203 7254 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3204 7255 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3205 7256 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3206 7257 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3207 7258 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
3208 7259 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
3209 7260 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
3210 7261 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
3211 7262 2.314071 TTCTACTCCCTCCGTTCCAA 57.686 50.000 0.00 0.00 0.00 3.53
3212 7263 2.500098 CAATTCTACTCCCTCCGTTCCA 59.500 50.000 0.00 0.00 0.00 3.53
3213 7264 2.500504 ACAATTCTACTCCCTCCGTTCC 59.499 50.000 0.00 0.00 0.00 3.62
3214 7265 3.889520 ACAATTCTACTCCCTCCGTTC 57.110 47.619 0.00 0.00 0.00 3.95
3215 7266 4.351127 AGTACAATTCTACTCCCTCCGTT 58.649 43.478 0.00 0.00 0.00 4.44
3216 7267 3.978610 AGTACAATTCTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
3217 7268 5.565045 GCATAGTACAATTCTACTCCCTCCG 60.565 48.000 0.00 0.00 0.00 4.63
3218 7269 5.540719 AGCATAGTACAATTCTACTCCCTCC 59.459 44.000 0.00 0.00 0.00 4.30
3219 7270 6.658188 AGCATAGTACAATTCTACTCCCTC 57.342 41.667 0.00 0.00 0.00 4.30
3220 7271 6.183361 CCAAGCATAGTACAATTCTACTCCCT 60.183 42.308 0.00 0.00 0.00 4.20
3221 7272 5.992217 CCAAGCATAGTACAATTCTACTCCC 59.008 44.000 0.00 0.00 0.00 4.30
3222 7273 5.467063 GCCAAGCATAGTACAATTCTACTCC 59.533 44.000 0.00 0.00 0.00 3.85
3223 7274 6.201806 CAGCCAAGCATAGTACAATTCTACTC 59.798 42.308 0.00 0.00 0.00 2.59
3224 7275 6.051717 CAGCCAAGCATAGTACAATTCTACT 58.948 40.000 0.00 0.00 0.00 2.57
3225 7276 5.817816 ACAGCCAAGCATAGTACAATTCTAC 59.182 40.000 0.00 0.00 0.00 2.59
3226 7277 5.989477 ACAGCCAAGCATAGTACAATTCTA 58.011 37.500 0.00 0.00 0.00 2.10
3407 7460 1.043022 CTTTTTCCAGCCCACTTGCT 58.957 50.000 0.00 0.00 44.00 3.91
3435 7489 8.519526 CAGCCTTTTACTGTCCACATATTTTTA 58.480 33.333 0.00 0.00 0.00 1.52
3441 7496 4.323417 CACAGCCTTTTACTGTCCACATA 58.677 43.478 0.00 0.00 45.06 2.29
3477 7533 1.793414 GGCCCAGCCCAATAGAATTT 58.207 50.000 0.00 0.00 44.06 1.82
3529 7588 6.786959 AGCCCATTAATTCAGCCCATTTATTA 59.213 34.615 0.00 0.00 0.00 0.98
3568 7627 2.189676 TCAGCCCGGTCCAATTAAGTA 58.810 47.619 0.00 0.00 0.00 2.24
3571 7630 2.241176 AGATTCAGCCCGGTCCAATTAA 59.759 45.455 0.00 0.00 0.00 1.40
3594 7653 4.927422 GACCAATTGAAAAGGTCGTTGAA 58.073 39.130 7.12 0.00 42.02 2.69
3639 7711 4.643387 GTCTGCCCAGGCCACGTT 62.643 66.667 5.01 0.00 41.09 3.99
3673 7745 2.031157 GTCGTTGAACCCATGACCTTTG 60.031 50.000 0.00 0.00 0.00 2.77
3798 7872 6.515272 AGGTCATAGTTTTTCATTTGCGAT 57.485 33.333 0.00 0.00 0.00 4.58
3885 7960 4.626081 ACGCTCGCAAGGCCTTGT 62.626 61.111 38.87 20.79 42.31 3.16
3886 7961 2.786564 GAAACGCTCGCAAGGCCTTG 62.787 60.000 36.58 36.58 43.14 3.61
3887 7962 2.594592 AAACGCTCGCAAGGCCTT 60.595 55.556 13.78 13.78 38.47 4.35
3888 7963 3.050275 GAAACGCTCGCAAGGCCT 61.050 61.111 0.00 0.00 38.47 5.19
3889 7964 4.445545 CGAAACGCTCGCAAGGCC 62.446 66.667 0.00 0.00 41.49 5.19
3900 7975 0.378962 TTGACAAACCTGGCGAAACG 59.621 50.000 0.00 0.00 30.46 3.60
3901 7976 1.133407 TGTTGACAAACCTGGCGAAAC 59.867 47.619 0.00 0.00 35.25 2.78
3902 7977 1.403679 CTGTTGACAAACCTGGCGAAA 59.596 47.619 0.00 0.00 35.25 3.46
3903 7978 1.021202 CTGTTGACAAACCTGGCGAA 58.979 50.000 0.00 0.00 35.25 4.70
3904 7979 1.444119 GCTGTTGACAAACCTGGCGA 61.444 55.000 0.00 0.00 35.25 5.54
3905 7980 1.008538 GCTGTTGACAAACCTGGCG 60.009 57.895 0.00 0.00 35.25 5.69
3906 7981 1.363807 GGCTGTTGACAAACCTGGC 59.636 57.895 0.00 0.00 35.25 4.85
3907 7982 1.463553 GGGGCTGTTGACAAACCTGG 61.464 60.000 0.00 0.00 35.25 4.45
3908 7983 1.463553 GGGGGCTGTTGACAAACCTG 61.464 60.000 0.00 0.00 35.25 4.00
3909 7984 1.152546 GGGGGCTGTTGACAAACCT 60.153 57.895 0.00 0.00 35.25 3.50
3910 7985 1.456705 TGGGGGCTGTTGACAAACC 60.457 57.895 0.00 0.00 35.25 3.27
3911 7986 0.755327 AGTGGGGGCTGTTGACAAAC 60.755 55.000 0.00 0.00 36.78 2.93
3912 7987 0.847373 TAGTGGGGGCTGTTGACAAA 59.153 50.000 0.00 0.00 0.00 2.83
3913 7988 0.109723 GTAGTGGGGGCTGTTGACAA 59.890 55.000 0.00 0.00 0.00 3.18
3914 7989 1.057275 TGTAGTGGGGGCTGTTGACA 61.057 55.000 0.00 0.00 0.00 3.58
3915 7990 0.328258 ATGTAGTGGGGGCTGTTGAC 59.672 55.000 0.00 0.00 0.00 3.18
3916 7991 0.327924 CATGTAGTGGGGGCTGTTGA 59.672 55.000 0.00 0.00 0.00 3.18
3917 7992 0.038166 ACATGTAGTGGGGGCTGTTG 59.962 55.000 0.00 0.00 0.00 3.33
3918 7993 0.777446 AACATGTAGTGGGGGCTGTT 59.223 50.000 0.00 0.00 0.00 3.16
3919 7994 0.328258 GAACATGTAGTGGGGGCTGT 59.672 55.000 0.00 0.00 0.00 4.40
3920 7995 0.744414 CGAACATGTAGTGGGGGCTG 60.744 60.000 0.00 0.00 0.00 4.85
3921 7996 1.602237 CGAACATGTAGTGGGGGCT 59.398 57.895 0.00 0.00 0.00 5.19
3922 7997 2.112815 GCGAACATGTAGTGGGGGC 61.113 63.158 0.00 0.00 0.00 5.80
3923 7998 0.828022 TAGCGAACATGTAGTGGGGG 59.172 55.000 0.00 0.00 0.00 5.40
3924 7999 2.550978 CTTAGCGAACATGTAGTGGGG 58.449 52.381 0.00 0.00 0.00 4.96
3925 8000 2.093658 ACCTTAGCGAACATGTAGTGGG 60.094 50.000 0.00 0.00 0.00 4.61
3926 8001 2.930040 CACCTTAGCGAACATGTAGTGG 59.070 50.000 0.00 0.00 0.00 4.00
3927 8002 2.930040 CCACCTTAGCGAACATGTAGTG 59.070 50.000 0.00 0.00 0.00 2.74
3928 8003 2.829720 TCCACCTTAGCGAACATGTAGT 59.170 45.455 0.00 0.00 0.00 2.73
3929 8004 3.187700 GTCCACCTTAGCGAACATGTAG 58.812 50.000 0.00 0.00 0.00 2.74
3930 8005 2.563620 TGTCCACCTTAGCGAACATGTA 59.436 45.455 0.00 0.00 0.00 2.29
3931 8006 1.346395 TGTCCACCTTAGCGAACATGT 59.654 47.619 0.00 0.00 0.00 3.21
3932 8007 2.093306 TGTCCACCTTAGCGAACATG 57.907 50.000 0.00 0.00 0.00 3.21
3933 8008 2.236146 TGATGTCCACCTTAGCGAACAT 59.764 45.455 0.00 0.00 0.00 2.71
3934 8009 1.621317 TGATGTCCACCTTAGCGAACA 59.379 47.619 0.00 0.00 0.00 3.18
3935 8010 2.000447 GTGATGTCCACCTTAGCGAAC 59.000 52.381 0.00 0.00 39.86 3.95
3936 8011 2.380084 GTGATGTCCACCTTAGCGAA 57.620 50.000 0.00 0.00 39.86 4.70
3945 8020 2.387309 CATCGCTGGTGATGTCCAC 58.613 57.895 13.93 0.00 44.95 4.02
3946 8021 4.939399 CATCGCTGGTGATGTCCA 57.061 55.556 13.93 0.00 40.67 4.02
3951 8026 1.668419 GCCTTTACATCGCTGGTGAT 58.332 50.000 0.00 0.00 0.00 3.06
3952 8027 0.739462 CGCCTTTACATCGCTGGTGA 60.739 55.000 0.00 0.00 0.00 4.02
3953 8028 1.715585 CGCCTTTACATCGCTGGTG 59.284 57.895 0.00 0.00 0.00 4.17
3954 8029 2.106683 GCGCCTTTACATCGCTGGT 61.107 57.895 0.00 0.00 44.79 4.00
3955 8030 2.709475 GCGCCTTTACATCGCTGG 59.291 61.111 0.00 0.00 44.79 4.85
3959 8034 1.640428 TCTTGAGCGCCTTTACATCG 58.360 50.000 2.29 0.00 0.00 3.84
3960 8035 4.094887 TGAATTCTTGAGCGCCTTTACATC 59.905 41.667 2.29 0.00 0.00 3.06
3961 8036 4.009675 TGAATTCTTGAGCGCCTTTACAT 58.990 39.130 2.29 0.00 0.00 2.29
3962 8037 3.407698 TGAATTCTTGAGCGCCTTTACA 58.592 40.909 2.29 0.00 0.00 2.41
3963 8038 3.181506 CCTGAATTCTTGAGCGCCTTTAC 60.182 47.826 2.29 0.00 0.00 2.01
3964 8039 3.009723 CCTGAATTCTTGAGCGCCTTTA 58.990 45.455 2.29 0.00 0.00 1.85
3965 8040 1.815003 CCTGAATTCTTGAGCGCCTTT 59.185 47.619 2.29 0.00 0.00 3.11
3966 8041 1.457346 CCTGAATTCTTGAGCGCCTT 58.543 50.000 2.29 0.00 0.00 4.35
3967 8042 1.028868 GCCTGAATTCTTGAGCGCCT 61.029 55.000 2.29 0.00 0.00 5.52
3968 8043 1.308069 TGCCTGAATTCTTGAGCGCC 61.308 55.000 2.29 0.00 0.00 6.53
3969 8044 0.737219 ATGCCTGAATTCTTGAGCGC 59.263 50.000 7.05 0.00 0.00 5.92
3970 8045 1.004185 CGATGCCTGAATTCTTGAGCG 60.004 52.381 7.05 0.00 0.00 5.03
3971 8046 1.268437 GCGATGCCTGAATTCTTGAGC 60.268 52.381 7.05 4.99 0.00 4.26
3972 8047 1.332997 GGCGATGCCTGAATTCTTGAG 59.667 52.381 7.05 0.00 46.69 3.02
3973 8048 1.382522 GGCGATGCCTGAATTCTTGA 58.617 50.000 7.05 0.00 46.69 3.02
3974 8049 3.932459 GGCGATGCCTGAATTCTTG 57.068 52.632 7.05 0.00 46.69 3.02
3986 8061 0.661552 CAAGATTCTGGCAGGCGATG 59.338 55.000 15.73 4.39 0.00 3.84
3987 8062 0.254178 ACAAGATTCTGGCAGGCGAT 59.746 50.000 15.73 6.65 0.00 4.58
3988 8063 0.391661 GACAAGATTCTGGCAGGCGA 60.392 55.000 15.73 1.43 0.00 5.54
3989 8064 1.699656 CGACAAGATTCTGGCAGGCG 61.700 60.000 15.73 0.00 0.00 5.52
3990 8065 0.391661 TCGACAAGATTCTGGCAGGC 60.392 55.000 15.73 4.76 0.00 4.85
3991 8066 1.338105 TGTCGACAAGATTCTGGCAGG 60.338 52.381 17.62 0.00 0.00 4.85
3992 8067 2.084610 TGTCGACAAGATTCTGGCAG 57.915 50.000 17.62 8.58 0.00 4.85
3993 8068 2.621338 GATGTCGACAAGATTCTGGCA 58.379 47.619 24.13 0.00 0.00 4.92
3994 8069 1.936547 GGATGTCGACAAGATTCTGGC 59.063 52.381 24.13 0.00 0.00 4.85
3995 8070 3.193263 CTGGATGTCGACAAGATTCTGG 58.807 50.000 24.13 8.45 0.00 3.86
3996 8071 3.193263 CCTGGATGTCGACAAGATTCTG 58.807 50.000 24.13 8.97 0.00 3.02
3997 8072 2.169352 CCCTGGATGTCGACAAGATTCT 59.831 50.000 24.13 4.23 0.00 2.40
3998 8073 2.555199 CCCTGGATGTCGACAAGATTC 58.445 52.381 24.13 15.16 0.00 2.52
3999 8074 1.407437 GCCCTGGATGTCGACAAGATT 60.407 52.381 24.13 5.57 0.00 2.40
4000 8075 0.179000 GCCCTGGATGTCGACAAGAT 59.821 55.000 24.13 6.01 0.00 2.40
4001 8076 1.596934 GCCCTGGATGTCGACAAGA 59.403 57.895 24.13 8.31 0.00 3.02
4002 8077 1.450312 GGCCCTGGATGTCGACAAG 60.450 63.158 24.13 15.36 0.00 3.16
4003 8078 1.773856 TTGGCCCTGGATGTCGACAA 61.774 55.000 24.13 5.15 0.00 3.18
4004 8079 1.561769 ATTGGCCCTGGATGTCGACA 61.562 55.000 22.48 22.48 0.00 4.35
4005 8080 0.468226 TATTGGCCCTGGATGTCGAC 59.532 55.000 9.11 9.11 0.00 4.20
4006 8081 0.468226 GTATTGGCCCTGGATGTCGA 59.532 55.000 0.00 0.00 0.00 4.20
4007 8082 0.180171 TGTATTGGCCCTGGATGTCG 59.820 55.000 0.00 0.00 0.00 4.35
4008 8083 2.092429 TCTTGTATTGGCCCTGGATGTC 60.092 50.000 0.00 0.00 0.00 3.06
4009 8084 1.922447 TCTTGTATTGGCCCTGGATGT 59.078 47.619 0.00 0.00 0.00 3.06
4010 8085 2.734755 TCTTGTATTGGCCCTGGATG 57.265 50.000 0.00 0.00 0.00 3.51
4011 8086 4.264083 CCATATCTTGTATTGGCCCTGGAT 60.264 45.833 0.00 0.00 0.00 3.41
4012 8087 3.074390 CCATATCTTGTATTGGCCCTGGA 59.926 47.826 0.00 0.00 0.00 3.86
4013 8088 3.424703 CCATATCTTGTATTGGCCCTGG 58.575 50.000 0.00 0.00 0.00 4.45
4014 8089 3.181429 ACCCATATCTTGTATTGGCCCTG 60.181 47.826 0.00 0.00 0.00 4.45
4015 8090 3.063650 ACCCATATCTTGTATTGGCCCT 58.936 45.455 0.00 0.00 0.00 5.19
4016 8091 3.525800 ACCCATATCTTGTATTGGCCC 57.474 47.619 0.00 0.00 0.00 5.80
4017 8092 4.010349 GCTACCCATATCTTGTATTGGCC 58.990 47.826 0.00 0.00 0.00 5.36
4018 8093 4.651778 TGCTACCCATATCTTGTATTGGC 58.348 43.478 0.00 0.00 0.00 4.52
4019 8094 5.707298 CCTTGCTACCCATATCTTGTATTGG 59.293 44.000 0.00 0.00 0.00 3.16
4020 8095 6.533730 TCCTTGCTACCCATATCTTGTATTG 58.466 40.000 0.00 0.00 0.00 1.90
4021 8096 6.745474 GCTCCTTGCTACCCATATCTTGTATT 60.745 42.308 0.00 0.00 38.95 1.89
4022 8097 5.280215 GCTCCTTGCTACCCATATCTTGTAT 60.280 44.000 0.00 0.00 38.95 2.29
4023 8098 4.040461 GCTCCTTGCTACCCATATCTTGTA 59.960 45.833 0.00 0.00 38.95 2.41
4024 8099 3.181450 GCTCCTTGCTACCCATATCTTGT 60.181 47.826 0.00 0.00 38.95 3.16
4025 8100 3.406764 GCTCCTTGCTACCCATATCTTG 58.593 50.000 0.00 0.00 38.95 3.02
4026 8101 3.778954 GCTCCTTGCTACCCATATCTT 57.221 47.619 0.00 0.00 38.95 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.