Multiple sequence alignment - TraesCS7A01G186900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G186900 chr7A 100.000 4812 0 0 1 4812 142161478 142156667 0.000000e+00 8887.0
1 TraesCS7A01G186900 chr7A 98.780 82 1 0 4731 4812 141877844 141877763 3.880000e-31 147.0
2 TraesCS7A01G186900 chr7A 97.561 82 2 0 4731 4812 140738658 140738577 1.810000e-29 141.0
3 TraesCS7A01G186900 chr7A 97.561 82 2 0 4731 4812 141009784 141009703 1.810000e-29 141.0
4 TraesCS7A01G186900 chr7A 96.341 82 3 0 4731 4812 141287124 141287043 8.400000e-28 135.0
5 TraesCS7A01G186900 chr7A 98.571 70 1 0 4731 4800 141617089 141617020 1.820000e-24 124.0
6 TraesCS7A01G186900 chr7A 83.846 130 11 8 4113 4237 608899955 608899831 1.090000e-21 115.0
7 TraesCS7A01G186900 chr7D 94.935 4146 148 33 1 4110 140330645 140326526 0.000000e+00 6436.0
8 TraesCS7A01G186900 chr7D 94.207 397 11 4 4195 4582 140326524 140326131 3.210000e-166 595.0
9 TraesCS7A01G186900 chr7D 79.245 530 101 5 2925 3449 140732686 140732161 1.270000e-95 361.0
10 TraesCS7A01G186900 chr7D 90.816 98 8 1 4110 4207 633397805 633397709 3.910000e-26 130.0
11 TraesCS7A01G186900 chr7D 89.024 82 8 1 4731 4812 383895908 383895828 3.060000e-17 100.0
12 TraesCS7A01G186900 chr7B 93.766 3208 99 34 939 4113 105561474 105558335 0.000000e+00 4723.0
13 TraesCS7A01G186900 chr7B 85.954 655 57 15 1 636 105562604 105561966 0.000000e+00 667.0
14 TraesCS7A01G186900 chr7B 78.491 530 105 7 2925 3449 105830422 105829897 5.970000e-89 339.0
15 TraesCS7A01G186900 chr7B 89.937 159 7 4 4196 4346 105558335 105558178 3.800000e-46 196.0
16 TraesCS7A01G186900 chr7B 93.750 80 5 0 4733 4812 613596505 613596426 2.350000e-23 121.0
17 TraesCS7A01G186900 chr7B 85.507 69 4 3 878 940 105561692 105561624 3.110000e-07 67.6
18 TraesCS7A01G186900 chr6B 83.015 524 84 5 2889 3409 590667589 590667068 2.030000e-128 470.0
19 TraesCS7A01G186900 chr6D 82.037 540 93 4 2889 3426 394618342 394617805 1.580000e-124 457.0
20 TraesCS7A01G186900 chr6D 94.318 88 5 0 4110 4197 91566810 91566723 8.400000e-28 135.0
21 TraesCS7A01G186900 chr6A 82.306 503 89 0 2924 3426 540616842 540616340 2.060000e-118 436.0
22 TraesCS7A01G186900 chr1A 97.561 82 2 0 4731 4812 557867007 557867088 1.810000e-29 141.0
23 TraesCS7A01G186900 chr1A 95.349 86 4 0 4109 4194 533694155 533694070 2.340000e-28 137.0
24 TraesCS7A01G186900 chr1A 87.838 74 7 2 4121 4194 304597222 304597293 8.580000e-13 86.1
25 TraesCS7A01G186900 chr1A 87.838 74 7 2 4121 4194 304776464 304776535 8.580000e-13 86.1
26 TraesCS7A01G186900 chr5B 91.000 100 7 2 4110 4209 121201344 121201247 3.020000e-27 134.0
27 TraesCS7A01G186900 chr3D 93.407 91 5 1 4110 4199 475310506 475310596 3.020000e-27 134.0
28 TraesCS7A01G186900 chr3D 92.473 93 6 1 4107 4198 338881647 338881555 1.090000e-26 132.0
29 TraesCS7A01G186900 chr3B 89.720 107 7 4 4091 4196 548455960 548455857 3.020000e-27 134.0
30 TraesCS7A01G186900 chr2D 91.579 95 7 1 4110 4203 217496991 217496897 3.910000e-26 130.0
31 TraesCS7A01G186900 chr2D 90.244 82 8 0 4731 4812 112722954 112723035 1.830000e-19 108.0
32 TraesCS7A01G186900 chr5A 87.379 103 12 1 4110 4211 464132764 464132866 3.040000e-22 117.0
33 TraesCS7A01G186900 chr4A 86.207 58 7 1 4154 4211 687153272 687153216 1.450000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G186900 chr7A 142156667 142161478 4811 True 8887.0 8887 100.000 1 4812 1 chr7A.!!$R6 4811
1 TraesCS7A01G186900 chr7D 140326131 140330645 4514 True 3515.5 6436 94.571 1 4582 2 chr7D.!!$R4 4581
2 TraesCS7A01G186900 chr7D 140732161 140732686 525 True 361.0 361 79.245 2925 3449 1 chr7D.!!$R1 524
3 TraesCS7A01G186900 chr7B 105558178 105562604 4426 True 1413.4 4723 88.791 1 4346 4 chr7B.!!$R3 4345
4 TraesCS7A01G186900 chr7B 105829897 105830422 525 True 339.0 339 78.491 2925 3449 1 chr7B.!!$R1 524
5 TraesCS7A01G186900 chr6B 590667068 590667589 521 True 470.0 470 83.015 2889 3409 1 chr6B.!!$R1 520
6 TraesCS7A01G186900 chr6D 394617805 394618342 537 True 457.0 457 82.037 2889 3426 1 chr6D.!!$R2 537
7 TraesCS7A01G186900 chr6A 540616340 540616842 502 True 436.0 436 82.306 2924 3426 1 chr6A.!!$R1 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.254178 TTTTGCAAGCCCAAAGCCAA 59.746 45.000 0.00 0.0 45.47 4.52 F
390 409 0.460284 CGTGCTCGCTCCTTGGTTAT 60.460 55.000 0.00 0.0 0.00 1.89 F
961 1217 0.527817 ACGGCGGATTTCATCGTCTC 60.528 55.000 13.24 0.0 0.00 3.36 F
1976 2263 0.962356 AGCAGGGGTTTCAGATTGCG 60.962 55.000 0.00 0.0 36.70 4.85 F
3432 3719 1.143183 GCGCCCTGTTAATCTCGGA 59.857 57.895 0.00 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2070 2357 0.798776 CCAGCACAACGAATCAGTCC 59.201 55.000 0.00 0.00 0.00 3.85 R
2361 2648 9.695526 CTAAGACTCTCTTTCAATCTCCATATG 57.304 37.037 0.00 0.00 37.89 1.78 R
2910 3197 1.071605 GCTGCTTTCTCACAGTACCG 58.928 55.000 0.00 0.00 36.26 4.02 R
3656 3943 0.239347 GCATGAGGCTCACACACAAC 59.761 55.000 21.37 0.47 40.25 3.32 R
4673 4986 0.179129 GCGCAACATGAAGATTGGGG 60.179 55.000 0.30 0.00 38.73 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.229304 TGAATCGCAAAAGGAGGGATAA 57.771 40.909 0.00 0.00 37.64 1.75
45 46 5.656416 TGAATCGCAAAAGGAGGGATAATTT 59.344 36.000 0.00 0.00 37.64 1.82
72 73 3.287867 TTTGGAAATTTTGCAAGCCCA 57.712 38.095 14.47 1.42 42.01 5.36
74 75 3.287867 TGGAAATTTTGCAAGCCCAAA 57.712 38.095 0.00 0.00 33.21 3.28
79 80 0.254178 TTTTGCAAGCCCAAAGCCAA 59.746 45.000 0.00 0.00 45.47 4.52
88 89 1.556451 GCCCAAAGCCAAGGATGAAAT 59.444 47.619 0.00 0.00 34.35 2.17
91 92 4.256110 CCCAAAGCCAAGGATGAAATTTC 58.744 43.478 11.41 11.41 0.00 2.17
93 94 4.256110 CAAAGCCAAGGATGAAATTTCCC 58.744 43.478 15.48 10.16 33.45 3.97
94 95 3.188880 AGCCAAGGATGAAATTTCCCA 57.811 42.857 15.48 0.00 33.45 4.37
121 122 3.960102 GGTGCCATGAATCCAATTCCTAA 59.040 43.478 0.00 0.00 38.50 2.69
154 157 4.518211 GGTGATCCATGAGAGCTTAATTGG 59.482 45.833 0.00 0.00 0.00 3.16
167 170 1.766494 TAATTGGCAGTGCATGAGGG 58.234 50.000 18.61 0.00 0.00 4.30
169 172 1.866483 ATTGGCAGTGCATGAGGGGA 61.866 55.000 18.61 0.00 0.00 4.81
170 173 1.866483 TTGGCAGTGCATGAGGGGAT 61.866 55.000 18.61 0.00 0.00 3.85
171 174 1.527844 GGCAGTGCATGAGGGGATC 60.528 63.158 18.61 0.00 0.00 3.36
184 201 4.283337 TGAGGGGATCAGTTGTACGATTA 58.717 43.478 0.00 0.00 32.77 1.75
197 214 4.518249 TGTACGATTACCATCCATGCAAA 58.482 39.130 0.00 0.00 0.00 3.68
209 226 1.619654 CATGCAAAGGAGGTGGACAA 58.380 50.000 0.00 0.00 0.00 3.18
246 263 8.784043 GGGCACACTAAATCGATCTATTAATTT 58.216 33.333 0.00 0.00 0.00 1.82
299 318 4.151335 CCGAGCGATATTTGGAAGAGATTG 59.849 45.833 0.00 0.00 0.00 2.67
306 325 3.780804 TTTGGAAGAGATTGTCCGGAA 57.219 42.857 5.23 0.00 36.65 4.30
332 351 4.804868 TGCGAGTAAAGGGTATGTAACA 57.195 40.909 0.00 0.00 0.00 2.41
390 409 0.460284 CGTGCTCGCTCCTTGGTTAT 60.460 55.000 0.00 0.00 0.00 1.89
514 535 7.072030 GCGAAATGCACTCATATTAGTTAAGG 58.928 38.462 0.00 0.00 45.45 2.69
554 575 9.499479 TTGCTCCAGATTTGCAAATTTAAATTA 57.501 25.926 24.81 8.43 42.65 1.40
557 578 9.977762 CTCCAGATTTGCAAATTTAAATTAAGC 57.022 29.630 24.81 22.02 33.06 3.09
608 629 8.958119 TGATCTAAAACCAGGTCAATATGTAC 57.042 34.615 0.00 0.00 32.69 2.90
752 774 7.161404 TCGATGTATTCCCTTCAATCCATAAG 58.839 38.462 0.00 0.00 0.00 1.73
798 820 6.260936 CCTTCGTCTGCAAATATCCATTACTT 59.739 38.462 0.00 0.00 0.00 2.24
817 839 5.587388 ACTTCGATAAGTATTTCCGGACA 57.413 39.130 1.83 0.00 44.26 4.02
835 907 8.065473 TCCGGACAAATGTACTGTATAAAGTA 57.935 34.615 0.00 0.00 0.00 2.24
852 924 4.553330 AAGTAACATGGTGGGAGTAGTG 57.447 45.455 0.00 0.00 0.00 2.74
961 1217 0.527817 ACGGCGGATTTCATCGTCTC 60.528 55.000 13.24 0.00 0.00 3.36
996 1252 1.160137 CTACTCCACCAAGCAAGCAC 58.840 55.000 0.00 0.00 0.00 4.40
1419 1699 4.384720 GGAAGTCCTCCTCCCCTC 57.615 66.667 0.00 0.00 41.61 4.30
1486 1766 1.446366 GGCCTGGTAAGATCCGACC 59.554 63.158 0.00 6.68 36.17 4.79
1639 1919 1.885887 CGTTTGGGCTCAAGATTTGGA 59.114 47.619 0.00 0.00 33.98 3.53
1735 2018 2.181125 TCAAATAGTGGACGGGCTACA 58.819 47.619 0.00 0.00 0.00 2.74
1976 2263 0.962356 AGCAGGGGTTTCAGATTGCG 60.962 55.000 0.00 0.00 36.70 4.85
2021 2308 9.273016 ACGGTAAATAATCCTCTTGACATTATG 57.727 33.333 0.00 0.00 0.00 1.90
2038 2325 9.473007 TGACATTATGATCTTTACCATGGAAAA 57.527 29.630 21.47 9.56 0.00 2.29
2044 2331 8.655935 ATGATCTTTACCATGGAAAACTTCTT 57.344 30.769 21.47 4.15 0.00 2.52
2045 2332 7.885297 TGATCTTTACCATGGAAAACTTCTTG 58.115 34.615 21.47 1.80 0.00 3.02
2046 2333 7.505585 TGATCTTTACCATGGAAAACTTCTTGT 59.494 33.333 21.47 0.00 0.00 3.16
2047 2334 7.654022 TCTTTACCATGGAAAACTTCTTGTT 57.346 32.000 21.47 0.00 41.29 2.83
2048 2335 7.488322 TCTTTACCATGGAAAACTTCTTGTTG 58.512 34.615 21.47 0.00 39.13 3.33
2054 2341 4.681744 TGGAAAACTTCTTGTTGTGATGC 58.318 39.130 0.00 0.00 39.13 3.91
2056 2343 5.592282 TGGAAAACTTCTTGTTGTGATGCTA 59.408 36.000 0.00 0.00 39.13 3.49
2062 2349 7.458409 ACTTCTTGTTGTGATGCTATTGAAT 57.542 32.000 0.00 0.00 0.00 2.57
2070 2357 4.581409 TGTGATGCTATTGAATCCATGGTG 59.419 41.667 12.58 0.00 0.00 4.17
2081 2368 1.275666 TCCATGGTGGACTGATTCGT 58.724 50.000 12.58 0.00 42.67 3.85
2138 2425 6.187682 ACAGGGTGGTTAGAAAGATTATTGG 58.812 40.000 0.00 0.00 0.00 3.16
2329 2616 3.552684 GCTGTTGGCAGTTTTAGCATGAA 60.553 43.478 0.00 0.00 44.32 2.57
2361 2648 5.529791 TGAGTAGCAAACAGTCTAGTGTTC 58.470 41.667 3.75 0.00 39.82 3.18
2392 2679 9.744468 GGAGATTGAAAGAGAGTCTTAGATTAC 57.256 37.037 0.00 0.00 35.27 1.89
2441 2728 8.736742 GCTGTTTTTGTCGATTGAATATGTATG 58.263 33.333 0.00 0.00 0.00 2.39
2501 2788 8.410141 TCGTATTCACATTGGGGAATTTATTTC 58.590 33.333 10.00 0.00 35.49 2.17
2666 2953 2.721971 CTATGCACCTAGGCCTGGCG 62.722 65.000 17.99 10.15 0.00 5.69
2824 3111 6.319141 AGTCTGGCTTTTAACACTGATTTC 57.681 37.500 0.00 0.00 0.00 2.17
2860 3147 6.489127 TGAAATTTCATACACGGGTAACTG 57.511 37.500 16.91 0.00 39.91 3.16
2861 3148 5.998981 TGAAATTTCATACACGGGTAACTGT 59.001 36.000 16.91 0.00 45.12 3.55
2862 3149 7.160049 TGAAATTTCATACACGGGTAACTGTA 58.840 34.615 16.91 0.00 43.37 2.74
2863 3150 7.118101 TGAAATTTCATACACGGGTAACTGTAC 59.882 37.037 16.91 0.00 43.37 2.90
2875 3162 5.593679 GGTAACTGTACCTAAGATCTGCA 57.406 43.478 0.00 0.00 45.72 4.41
2882 3169 6.048732 TGTACCTAAGATCTGCAAATGTGA 57.951 37.500 0.00 0.00 0.00 3.58
3390 3677 1.489481 TGCCATACACTCTGGAGGAG 58.511 55.000 2.58 0.00 46.87 3.69
3432 3719 1.143183 GCGCCCTGTTAATCTCGGA 59.857 57.895 0.00 0.00 0.00 4.55
3467 3754 5.244851 AGAGCAAGTCTGACTAAGTGATTCA 59.755 40.000 11.30 0.00 32.57 2.57
3653 3940 2.040813 ACTCTGATTTGCTCATGTGGGT 59.959 45.455 0.00 0.00 32.10 4.51
3654 3941 3.087031 CTCTGATTTGCTCATGTGGGTT 58.913 45.455 0.00 0.00 32.10 4.11
3655 3942 2.821378 TCTGATTTGCTCATGTGGGTTG 59.179 45.455 0.00 0.00 32.10 3.77
3656 3943 1.894466 TGATTTGCTCATGTGGGTTGG 59.106 47.619 0.00 0.00 0.00 3.77
3786 4081 3.529533 CTGTCATGGACATTGTCTCTCC 58.470 50.000 16.02 1.22 41.94 3.71
3915 4210 2.159448 CGTGGTTCTGTTTGTCTGCAAA 60.159 45.455 0.00 0.00 41.77 3.68
3925 4220 3.921119 TTGTCTGCAAACCTAGCATTG 57.079 42.857 0.00 2.33 41.82 2.82
3968 4264 4.020662 AGGTGACCTAAAAGAAGCAGAGAG 60.021 45.833 0.07 0.00 28.47 3.20
3980 4276 1.376037 CAGAGAGCCCACGGGAAAC 60.376 63.158 6.21 0.00 37.50 2.78
3993 4290 1.250840 GGGAAACGCAGCCTCCAAAT 61.251 55.000 5.43 0.00 33.66 2.32
3994 4291 1.459450 GGAAACGCAGCCTCCAAATA 58.541 50.000 0.00 0.00 32.42 1.40
3996 4293 2.159379 GGAAACGCAGCCTCCAAATAAG 60.159 50.000 0.00 0.00 32.42 1.73
4003 4300 3.873801 GCAGCCTCCAAATAAGTTCAGGA 60.874 47.826 0.00 0.00 0.00 3.86
4004 4301 4.335416 CAGCCTCCAAATAAGTTCAGGAA 58.665 43.478 0.00 0.00 0.00 3.36
4087 4384 4.598406 CACGCATGTGCTTAGTCAAATA 57.402 40.909 6.08 0.00 39.67 1.40
4093 4390 4.286297 TGTGCTTAGTCAAATAGGTGCT 57.714 40.909 0.00 0.00 0.00 4.40
4118 4415 3.978718 GCATTCAGCATTACTCCCTTC 57.021 47.619 0.00 0.00 44.79 3.46
4119 4416 2.289002 GCATTCAGCATTACTCCCTTCG 59.711 50.000 0.00 0.00 44.79 3.79
4120 4417 3.535561 CATTCAGCATTACTCCCTTCGT 58.464 45.455 0.00 0.00 0.00 3.85
4121 4418 2.961526 TCAGCATTACTCCCTTCGTC 57.038 50.000 0.00 0.00 0.00 4.20
4122 4419 1.480954 TCAGCATTACTCCCTTCGTCC 59.519 52.381 0.00 0.00 0.00 4.79
4123 4420 0.831307 AGCATTACTCCCTTCGTCCC 59.169 55.000 0.00 0.00 0.00 4.46
4124 4421 0.539986 GCATTACTCCCTTCGTCCCA 59.460 55.000 0.00 0.00 0.00 4.37
4125 4422 1.141053 GCATTACTCCCTTCGTCCCAT 59.859 52.381 0.00 0.00 0.00 4.00
4126 4423 2.367567 GCATTACTCCCTTCGTCCCATA 59.632 50.000 0.00 0.00 0.00 2.74
4127 4424 3.181458 GCATTACTCCCTTCGTCCCATAA 60.181 47.826 0.00 0.00 0.00 1.90
4128 4425 4.505039 GCATTACTCCCTTCGTCCCATAAT 60.505 45.833 0.00 0.00 0.00 1.28
4129 4426 5.279809 GCATTACTCCCTTCGTCCCATAATA 60.280 44.000 0.00 0.00 0.00 0.98
4130 4427 6.576442 GCATTACTCCCTTCGTCCCATAATAT 60.576 42.308 0.00 0.00 0.00 1.28
4131 4428 7.364408 GCATTACTCCCTTCGTCCCATAATATA 60.364 40.741 0.00 0.00 0.00 0.86
4132 4429 8.537016 CATTACTCCCTTCGTCCCATAATATAA 58.463 37.037 0.00 0.00 0.00 0.98
4133 4430 6.356186 ACTCCCTTCGTCCCATAATATAAC 57.644 41.667 0.00 0.00 0.00 1.89
4134 4431 5.842328 ACTCCCTTCGTCCCATAATATAACA 59.158 40.000 0.00 0.00 0.00 2.41
4135 4432 6.014499 ACTCCCTTCGTCCCATAATATAACAG 60.014 42.308 0.00 0.00 0.00 3.16
4136 4433 4.935808 CCCTTCGTCCCATAATATAACAGC 59.064 45.833 0.00 0.00 0.00 4.40
4137 4434 4.625742 CCTTCGTCCCATAATATAACAGCG 59.374 45.833 0.00 0.00 0.00 5.18
4138 4435 4.859304 TCGTCCCATAATATAACAGCGT 57.141 40.909 0.00 0.00 0.00 5.07
4139 4436 5.204409 TCGTCCCATAATATAACAGCGTT 57.796 39.130 0.02 0.02 0.00 4.84
4140 4437 5.603596 TCGTCCCATAATATAACAGCGTTT 58.396 37.500 0.00 0.00 0.00 3.60
4141 4438 6.050432 TCGTCCCATAATATAACAGCGTTTT 58.950 36.000 0.00 0.00 0.00 2.43
4142 4439 6.539464 TCGTCCCATAATATAACAGCGTTTTT 59.461 34.615 0.00 0.00 0.00 1.94
4143 4440 7.710044 TCGTCCCATAATATAACAGCGTTTTTA 59.290 33.333 0.00 0.00 0.00 1.52
4144 4441 8.336806 CGTCCCATAATATAACAGCGTTTTTAA 58.663 33.333 0.00 0.00 0.00 1.52
4145 4442 9.442033 GTCCCATAATATAACAGCGTTTTTAAC 57.558 33.333 0.00 0.00 0.00 2.01
4146 4443 9.175312 TCCCATAATATAACAGCGTTTTTAACA 57.825 29.630 0.00 0.00 0.00 2.41
4147 4444 9.228636 CCCATAATATAACAGCGTTTTTAACAC 57.771 33.333 0.00 0.00 0.00 3.32
4148 4445 9.997482 CCATAATATAACAGCGTTTTTAACACT 57.003 29.630 0.00 0.00 0.00 3.55
4154 4451 6.907206 AACAGCGTTTTTAACACTAGTGTA 57.093 33.333 28.13 11.69 44.13 2.90
4155 4452 6.520792 ACAGCGTTTTTAACACTAGTGTAG 57.479 37.500 28.13 14.03 44.13 2.74
4156 4453 6.044682 ACAGCGTTTTTAACACTAGTGTAGT 58.955 36.000 28.13 16.41 44.13 2.73
4189 4486 6.561519 ATTCTTATATTATGGGACGGAGGG 57.438 41.667 0.00 0.00 0.00 4.30
4190 4487 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
4191 4488 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4192 4489 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
4193 4490 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
4242 4539 8.208718 TGGAGAATAATAACAAATCTGGTTCG 57.791 34.615 0.00 0.00 0.00 3.95
4430 4735 3.129462 TCCGCAACAACAACAAAATCTGA 59.871 39.130 0.00 0.00 0.00 3.27
4431 4736 3.862267 CCGCAACAACAACAAAATCTGAA 59.138 39.130 0.00 0.00 0.00 3.02
4432 4737 4.328440 CCGCAACAACAACAAAATCTGAAA 59.672 37.500 0.00 0.00 0.00 2.69
4483 4789 2.222007 TGTGCCAAAACTGTGATTGC 57.778 45.000 2.08 0.00 0.00 3.56
4557 4870 7.544804 AAATGGTTCCTGCTTTCTAAAGAAT 57.455 32.000 6.64 0.00 38.28 2.40
4563 4876 5.248640 TCCTGCTTTCTAAAGAATCTGTGG 58.751 41.667 6.64 0.00 38.28 4.17
4582 4895 8.185506 TCTGTGGAAGTTAACACACTAGAATA 57.814 34.615 20.97 6.55 42.20 1.75
4583 4896 8.644216 TCTGTGGAAGTTAACACACTAGAATAA 58.356 33.333 20.97 6.06 42.20 1.40
4584 4897 9.436957 CTGTGGAAGTTAACACACTAGAATAAT 57.563 33.333 20.97 0.00 42.20 1.28
4610 4923 7.477144 TGATATGAGTTGTATTTGGCTAACG 57.523 36.000 0.00 0.00 0.00 3.18
4611 4924 7.045416 TGATATGAGTTGTATTTGGCTAACGT 58.955 34.615 0.00 0.00 0.00 3.99
4612 4925 7.551262 TGATATGAGTTGTATTTGGCTAACGTT 59.449 33.333 5.88 5.88 0.00 3.99
4613 4926 6.569179 ATGAGTTGTATTTGGCTAACGTTT 57.431 33.333 5.91 0.00 0.00 3.60
4614 4927 6.380095 TGAGTTGTATTTGGCTAACGTTTT 57.620 33.333 5.91 0.00 0.00 2.43
4615 4928 6.797454 TGAGTTGTATTTGGCTAACGTTTTT 58.203 32.000 5.91 0.00 0.00 1.94
4643 4956 8.635765 AAGAGCTGTGTTGATTAATAAAAGGA 57.364 30.769 0.00 0.00 0.00 3.36
4644 4957 8.814038 AGAGCTGTGTTGATTAATAAAAGGAT 57.186 30.769 0.00 0.00 0.00 3.24
4645 4958 9.905713 AGAGCTGTGTTGATTAATAAAAGGATA 57.094 29.630 0.00 0.00 0.00 2.59
4647 4960 9.905713 AGCTGTGTTGATTAATAAAAGGATAGA 57.094 29.630 0.00 0.00 0.00 1.98
4663 4976 9.898152 AAAAGGATAGATTTAAGAGTGGAAGAG 57.102 33.333 0.00 0.00 0.00 2.85
4664 4977 8.846423 AAGGATAGATTTAAGAGTGGAAGAGA 57.154 34.615 0.00 0.00 0.00 3.10
4665 4978 9.445973 AAGGATAGATTTAAGAGTGGAAGAGAT 57.554 33.333 0.00 0.00 0.00 2.75
4666 4979 8.869109 AGGATAGATTTAAGAGTGGAAGAGATG 58.131 37.037 0.00 0.00 0.00 2.90
4667 4980 8.646900 GGATAGATTTAAGAGTGGAAGAGATGT 58.353 37.037 0.00 0.00 0.00 3.06
4668 4981 9.691362 GATAGATTTAAGAGTGGAAGAGATGTC 57.309 37.037 0.00 0.00 0.00 3.06
4669 4982 7.732222 AGATTTAAGAGTGGAAGAGATGTCT 57.268 36.000 0.00 0.00 32.81 3.41
4670 4983 7.781056 AGATTTAAGAGTGGAAGAGATGTCTC 58.219 38.462 1.75 1.75 43.17 3.36
4671 4984 5.923733 TTAAGAGTGGAAGAGATGTCTCC 57.076 43.478 6.41 0.00 43.88 3.71
4672 4985 3.756082 AGAGTGGAAGAGATGTCTCCT 57.244 47.619 6.41 0.00 43.88 3.69
4673 4986 3.631250 AGAGTGGAAGAGATGTCTCCTC 58.369 50.000 6.41 3.50 43.88 3.71
4676 4989 1.419381 GGAAGAGATGTCTCCTCCCC 58.581 60.000 14.25 4.73 44.25 4.81
4677 4990 1.343478 GGAAGAGATGTCTCCTCCCCA 60.343 57.143 14.25 0.00 44.25 4.96
4678 4991 2.472029 GAAGAGATGTCTCCTCCCCAA 58.528 52.381 6.41 0.00 43.88 4.12
4679 4992 2.885388 AGAGATGTCTCCTCCCCAAT 57.115 50.000 6.41 0.00 43.88 3.16
4680 4993 2.688477 AGAGATGTCTCCTCCCCAATC 58.312 52.381 6.41 0.00 43.88 2.67
4681 4994 2.249743 AGAGATGTCTCCTCCCCAATCT 59.750 50.000 6.41 0.00 43.88 2.40
4682 4995 3.044894 GAGATGTCTCCTCCCCAATCTT 58.955 50.000 0.00 0.00 37.02 2.40
4683 4996 3.044894 AGATGTCTCCTCCCCAATCTTC 58.955 50.000 0.00 0.00 0.00 2.87
4684 4997 2.342406 TGTCTCCTCCCCAATCTTCA 57.658 50.000 0.00 0.00 0.00 3.02
4685 4998 2.850833 TGTCTCCTCCCCAATCTTCAT 58.149 47.619 0.00 0.00 0.00 2.57
4686 4999 2.507058 TGTCTCCTCCCCAATCTTCATG 59.493 50.000 0.00 0.00 0.00 3.07
4687 5000 2.507471 GTCTCCTCCCCAATCTTCATGT 59.493 50.000 0.00 0.00 0.00 3.21
4688 5001 3.054065 GTCTCCTCCCCAATCTTCATGTT 60.054 47.826 0.00 0.00 0.00 2.71
4689 5002 3.054139 TCTCCTCCCCAATCTTCATGTTG 60.054 47.826 0.00 0.00 0.00 3.33
4690 5003 1.753073 CCTCCCCAATCTTCATGTTGC 59.247 52.381 0.00 0.00 0.00 4.17
4691 5004 1.402968 CTCCCCAATCTTCATGTTGCG 59.597 52.381 0.00 0.00 0.00 4.85
4692 5005 0.179129 CCCCAATCTTCATGTTGCGC 60.179 55.000 0.00 0.00 0.00 6.09
4693 5006 0.527113 CCCAATCTTCATGTTGCGCA 59.473 50.000 5.66 5.66 0.00 6.09
4694 5007 1.135527 CCCAATCTTCATGTTGCGCAT 59.864 47.619 12.75 0.00 38.60 4.73
4695 5008 2.358582 CCCAATCTTCATGTTGCGCATA 59.641 45.455 12.75 3.62 35.74 3.14
4696 5009 3.549423 CCCAATCTTCATGTTGCGCATAG 60.549 47.826 12.75 1.17 35.74 2.23
4697 5010 3.065786 CCAATCTTCATGTTGCGCATAGT 59.934 43.478 12.75 0.00 35.74 2.12
4698 5011 4.439153 CCAATCTTCATGTTGCGCATAGTT 60.439 41.667 12.75 0.00 35.74 2.24
4699 5012 5.220835 CCAATCTTCATGTTGCGCATAGTTA 60.221 40.000 12.75 0.00 35.74 2.24
4700 5013 5.663795 ATCTTCATGTTGCGCATAGTTAG 57.336 39.130 12.75 5.24 35.74 2.34
4701 5014 4.503910 TCTTCATGTTGCGCATAGTTAGT 58.496 39.130 12.75 0.00 35.74 2.24
4702 5015 4.935205 TCTTCATGTTGCGCATAGTTAGTT 59.065 37.500 12.75 0.00 35.74 2.24
4703 5016 4.598406 TCATGTTGCGCATAGTTAGTTG 57.402 40.909 12.75 1.06 35.74 3.16
4704 5017 4.000325 TCATGTTGCGCATAGTTAGTTGT 59.000 39.130 12.75 0.00 35.74 3.32
4705 5018 3.804518 TGTTGCGCATAGTTAGTTGTG 57.195 42.857 12.75 0.00 0.00 3.33
4706 5019 3.394719 TGTTGCGCATAGTTAGTTGTGA 58.605 40.909 12.75 0.00 0.00 3.58
4707 5020 3.810386 TGTTGCGCATAGTTAGTTGTGAA 59.190 39.130 12.75 0.00 0.00 3.18
4708 5021 4.084066 TGTTGCGCATAGTTAGTTGTGAAG 60.084 41.667 12.75 0.00 0.00 3.02
4709 5022 3.920446 TGCGCATAGTTAGTTGTGAAGA 58.080 40.909 5.66 0.00 0.00 2.87
4710 5023 4.311606 TGCGCATAGTTAGTTGTGAAGAA 58.688 39.130 5.66 0.00 0.00 2.52
4711 5024 4.935205 TGCGCATAGTTAGTTGTGAAGAAT 59.065 37.500 5.66 0.00 0.00 2.40
4712 5025 6.103330 TGCGCATAGTTAGTTGTGAAGAATA 58.897 36.000 5.66 0.00 0.00 1.75
4713 5026 6.761242 TGCGCATAGTTAGTTGTGAAGAATAT 59.239 34.615 5.66 0.00 0.00 1.28
4714 5027 7.923878 TGCGCATAGTTAGTTGTGAAGAATATA 59.076 33.333 5.66 0.00 0.00 0.86
4715 5028 8.428536 GCGCATAGTTAGTTGTGAAGAATATAG 58.571 37.037 0.30 0.00 0.00 1.31
4716 5029 8.916654 CGCATAGTTAGTTGTGAAGAATATAGG 58.083 37.037 0.00 0.00 0.00 2.57
4717 5030 9.982651 GCATAGTTAGTTGTGAAGAATATAGGA 57.017 33.333 0.00 0.00 0.00 2.94
4720 5033 7.501844 AGTTAGTTGTGAAGAATATAGGAGCC 58.498 38.462 0.00 0.00 0.00 4.70
4721 5034 5.957771 AGTTGTGAAGAATATAGGAGCCA 57.042 39.130 0.00 0.00 0.00 4.75
4722 5035 6.313519 AGTTGTGAAGAATATAGGAGCCAA 57.686 37.500 0.00 0.00 0.00 4.52
4723 5036 6.904626 AGTTGTGAAGAATATAGGAGCCAAT 58.095 36.000 0.00 0.00 0.00 3.16
4724 5037 6.769822 AGTTGTGAAGAATATAGGAGCCAATG 59.230 38.462 0.00 0.00 0.00 2.82
4725 5038 6.499106 TGTGAAGAATATAGGAGCCAATGA 57.501 37.500 0.00 0.00 0.00 2.57
4726 5039 6.291377 TGTGAAGAATATAGGAGCCAATGAC 58.709 40.000 0.00 0.00 0.00 3.06
4727 5040 6.126796 TGTGAAGAATATAGGAGCCAATGACA 60.127 38.462 0.00 0.00 0.00 3.58
4728 5041 6.767902 GTGAAGAATATAGGAGCCAATGACAA 59.232 38.462 0.00 0.00 0.00 3.18
4729 5042 7.446625 GTGAAGAATATAGGAGCCAATGACAAT 59.553 37.037 0.00 0.00 0.00 2.71
4730 5043 7.446319 TGAAGAATATAGGAGCCAATGACAATG 59.554 37.037 0.00 0.00 0.00 2.82
4731 5044 7.083062 AGAATATAGGAGCCAATGACAATGA 57.917 36.000 0.00 0.00 0.00 2.57
4732 5045 7.696981 AGAATATAGGAGCCAATGACAATGAT 58.303 34.615 0.00 0.00 0.00 2.45
4733 5046 8.829746 AGAATATAGGAGCCAATGACAATGATA 58.170 33.333 0.00 0.00 0.00 2.15
4734 5047 9.453572 GAATATAGGAGCCAATGACAATGATAA 57.546 33.333 0.00 0.00 0.00 1.75
4735 5048 9.812347 AATATAGGAGCCAATGACAATGATAAA 57.188 29.630 0.00 0.00 0.00 1.40
4736 5049 9.986157 ATATAGGAGCCAATGACAATGATAAAT 57.014 29.630 0.00 0.00 0.00 1.40
4737 5050 6.645790 AGGAGCCAATGACAATGATAAATC 57.354 37.500 0.00 0.00 0.00 2.17
4738 5051 5.240183 AGGAGCCAATGACAATGATAAATCG 59.760 40.000 0.00 0.00 0.00 3.34
4739 5052 4.863491 AGCCAATGACAATGATAAATCGC 58.137 39.130 0.00 0.00 0.00 4.58
4740 5053 3.665409 GCCAATGACAATGATAAATCGCG 59.335 43.478 0.00 0.00 0.00 5.87
4741 5054 4.789481 GCCAATGACAATGATAAATCGCGT 60.789 41.667 5.77 0.00 0.00 6.01
4742 5055 4.671964 CCAATGACAATGATAAATCGCGTG 59.328 41.667 5.77 0.00 0.00 5.34
4743 5056 5.265477 CAATGACAATGATAAATCGCGTGT 58.735 37.500 5.77 0.00 0.00 4.49
4744 5057 4.257536 TGACAATGATAAATCGCGTGTG 57.742 40.909 5.77 0.00 0.00 3.82
4745 5058 3.029074 GACAATGATAAATCGCGTGTGC 58.971 45.455 5.77 0.00 37.91 4.57
4746 5059 2.418280 ACAATGATAAATCGCGTGTGCA 59.582 40.909 5.77 0.00 42.97 4.57
4747 5060 2.737467 ATGATAAATCGCGTGTGCAC 57.263 45.000 10.75 10.75 42.97 4.57
4748 5061 1.433534 TGATAAATCGCGTGTGCACA 58.566 45.000 17.42 17.42 42.97 4.57
4749 5062 2.006169 TGATAAATCGCGTGTGCACAT 58.994 42.857 24.69 7.51 42.97 3.21
4750 5063 2.222999 TGATAAATCGCGTGTGCACATG 60.223 45.455 30.63 30.63 42.97 3.21
4757 5070 4.705519 GTGTGCACATGCGGCCAC 62.706 66.667 24.69 3.13 45.83 5.01
4769 5082 2.357760 GGCCACGCAAGGTCGTTA 60.358 61.111 0.00 0.00 41.21 3.18
4770 5083 1.743995 GGCCACGCAAGGTCGTTAT 60.744 57.895 0.00 0.00 41.21 1.89
4771 5084 1.702491 GGCCACGCAAGGTCGTTATC 61.702 60.000 0.00 0.00 41.21 1.75
4772 5085 1.702491 GCCACGCAAGGTCGTTATCC 61.702 60.000 0.00 0.00 41.21 2.59
4773 5086 1.418342 CCACGCAAGGTCGTTATCCG 61.418 60.000 0.00 0.00 41.21 4.18
4774 5087 1.808390 ACGCAAGGTCGTTATCCGC 60.808 57.895 0.00 0.00 40.07 5.54
4775 5088 1.807981 CGCAAGGTCGTTATCCGCA 60.808 57.895 0.00 0.00 36.19 5.69
4776 5089 1.713830 GCAAGGTCGTTATCCGCAC 59.286 57.895 0.00 0.00 36.19 5.34
4777 5090 1.702491 GCAAGGTCGTTATCCGCACC 61.702 60.000 0.00 0.00 37.16 5.01
4778 5091 1.153706 AAGGTCGTTATCCGCACCG 60.154 57.895 0.00 0.00 39.90 4.94
4789 5102 4.446413 CGCACCGGTAGTCCCCAC 62.446 72.222 6.87 0.00 0.00 4.61
4790 5103 4.446413 GCACCGGTAGTCCCCACG 62.446 72.222 6.87 0.00 0.00 4.94
4791 5104 4.446413 CACCGGTAGTCCCCACGC 62.446 72.222 6.87 0.00 0.00 5.34
4794 5107 3.524606 CGGTAGTCCCCACGCGAT 61.525 66.667 15.93 0.00 0.00 4.58
4795 5108 2.897972 GGTAGTCCCCACGCGATT 59.102 61.111 15.93 0.00 0.00 3.34
4796 5109 1.227176 GGTAGTCCCCACGCGATTC 60.227 63.158 15.93 0.00 0.00 2.52
4797 5110 1.588139 GTAGTCCCCACGCGATTCG 60.588 63.158 15.93 0.62 45.38 3.34
4807 5120 1.917921 CGCGATTCGTGCTAACTCC 59.082 57.895 0.00 0.00 0.00 3.85
4808 5121 0.800683 CGCGATTCGTGCTAACTCCA 60.801 55.000 0.00 0.00 0.00 3.86
4809 5122 1.355971 GCGATTCGTGCTAACTCCAA 58.644 50.000 8.03 0.00 0.00 3.53
4810 5123 1.933853 GCGATTCGTGCTAACTCCAAT 59.066 47.619 8.03 0.00 0.00 3.16
4811 5124 3.120792 GCGATTCGTGCTAACTCCAATA 58.879 45.455 8.03 0.00 0.00 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.515020 TCCTTTTGCGATTCATAATTTTGTATC 57.485 29.630 5.73 5.73 0.00 2.24
25 26 7.394923 TCTTTAAAATTATCCCTCCTTTTGCGA 59.605 33.333 0.00 0.00 0.00 5.10
45 46 7.255416 GGGCTTGCAAAATTTCCAAATCTTTAA 60.255 33.333 0.00 0.00 0.00 1.52
72 73 3.909364 TGGGAAATTTCATCCTTGGCTTT 59.091 39.130 19.49 0.00 37.14 3.51
74 75 3.188880 TGGGAAATTTCATCCTTGGCT 57.811 42.857 19.49 0.00 37.14 4.75
79 80 5.070847 GCACCATTATGGGAAATTTCATCCT 59.929 40.000 19.49 7.06 43.37 3.24
88 89 3.395054 TCATGGCACCATTATGGGAAA 57.605 42.857 16.35 0.00 43.37 3.13
91 92 2.564062 GGATTCATGGCACCATTATGGG 59.436 50.000 16.35 5.82 43.37 4.00
93 94 4.940905 TTGGATTCATGGCACCATTATG 57.059 40.909 0.00 0.00 33.90 1.90
94 95 5.012354 GGAATTGGATTCATGGCACCATTAT 59.988 40.000 0.00 0.00 41.03 1.28
154 157 0.818445 CTGATCCCCTCATGCACTGC 60.818 60.000 0.00 0.00 32.10 4.40
167 170 4.989168 GGATGGTAATCGTACAACTGATCC 59.011 45.833 0.00 0.00 33.18 3.36
169 172 5.607939 TGGATGGTAATCGTACAACTGAT 57.392 39.130 0.00 0.00 33.18 2.90
170 173 5.356426 CATGGATGGTAATCGTACAACTGA 58.644 41.667 0.00 0.00 33.18 3.41
171 174 4.024893 GCATGGATGGTAATCGTACAACTG 60.025 45.833 0.00 0.00 33.18 3.16
184 201 0.706433 ACCTCCTTTGCATGGATGGT 59.294 50.000 16.86 16.86 33.44 3.55
197 214 6.187682 CCTGTATTTTATTTGTCCACCTCCT 58.812 40.000 0.00 0.00 0.00 3.69
209 226 7.554835 TCGATTTAGTGTGCCCTGTATTTTATT 59.445 33.333 0.00 0.00 0.00 1.40
246 263 1.648504 CGCTCTCTCACATGCATTGA 58.351 50.000 0.00 3.95 0.00 2.57
248 265 0.463295 CCCGCTCTCTCACATGCATT 60.463 55.000 0.00 0.00 0.00 3.56
290 309 5.559035 CGCAATTATTCCGGACAATCTCTTC 60.559 44.000 1.83 0.00 0.00 2.87
299 318 4.025145 CCTTTACTCGCAATTATTCCGGAC 60.025 45.833 1.83 0.00 0.00 4.79
306 325 7.988599 TGTTACATACCCTTTACTCGCAATTAT 59.011 33.333 0.00 0.00 0.00 1.28
390 409 0.322322 ACCGGACGGCTAATTTGTCA 59.678 50.000 9.46 0.00 39.32 3.58
514 535 2.754552 TGGAGCAACCAGATTTGTATGC 59.245 45.455 0.00 3.20 44.64 3.14
554 575 9.201989 TCGGATATAATATAATCACTCAGGCTT 57.798 33.333 0.00 0.00 0.00 4.35
574 595 7.453439 TGACCTGGTTTTAGATCATATCGGATA 59.547 37.037 0.00 0.00 0.00 2.59
583 604 8.544622 TGTACATATTGACCTGGTTTTAGATCA 58.455 33.333 0.00 0.00 0.00 2.92
712 734 7.967854 GGAATACATCGAGTTCTCTAGATCATG 59.032 40.741 0.00 0.00 34.64 3.07
717 739 5.942961 AGGGAATACATCGAGTTCTCTAGA 58.057 41.667 3.94 0.00 31.18 2.43
723 745 5.467063 GGATTGAAGGGAATACATCGAGTTC 59.533 44.000 0.00 0.00 0.00 3.01
752 774 6.980051 AGGGAGTATAAACAACGTCAATTC 57.020 37.500 0.00 0.00 0.00 2.17
798 820 6.342906 ACATTTGTCCGGAAATACTTATCGA 58.657 36.000 5.23 0.00 0.00 3.59
835 907 3.876309 AAACACTACTCCCACCATGTT 57.124 42.857 0.00 0.00 31.82 2.71
961 1217 2.125326 TAGAGGATCCGTGGTGGCG 61.125 63.158 5.98 0.00 37.80 5.69
1419 1699 2.435586 CAAGTGGCAGCGGGAGAG 60.436 66.667 0.00 0.00 0.00 3.20
1486 1766 3.188048 GTCTGCAGAATCTGACAAACCAG 59.812 47.826 20.19 10.32 35.72 4.00
1720 2003 2.056223 GCCTGTAGCCCGTCCACTA 61.056 63.158 0.00 0.00 34.35 2.74
1735 2018 3.265479 AGCTCTCCAAATCTTTACTGCCT 59.735 43.478 0.00 0.00 0.00 4.75
1741 2024 3.054361 GTCCCCAGCTCTCCAAATCTTTA 60.054 47.826 0.00 0.00 0.00 1.85
1952 2239 1.529010 CTGAAACCCCTGCTGCACA 60.529 57.895 0.00 0.00 0.00 4.57
1976 2263 2.608261 CGTGAACAGGAGAAGTGAGACC 60.608 54.545 0.00 0.00 0.00 3.85
2021 2308 7.886338 ACAAGAAGTTTTCCATGGTAAAGATC 58.114 34.615 16.07 15.74 0.00 2.75
2027 2314 5.888724 TCACAACAAGAAGTTTTCCATGGTA 59.111 36.000 12.58 0.00 38.74 3.25
2038 2325 6.882610 TTCAATAGCATCACAACAAGAAGT 57.117 33.333 0.00 0.00 0.00 3.01
2042 2329 6.198650 TGGATTCAATAGCATCACAACAAG 57.801 37.500 0.00 0.00 0.00 3.16
2044 2331 5.068067 CCATGGATTCAATAGCATCACAACA 59.932 40.000 5.56 0.00 0.00 3.33
2045 2332 5.068198 ACCATGGATTCAATAGCATCACAAC 59.932 40.000 21.47 0.00 0.00 3.32
2046 2333 5.068067 CACCATGGATTCAATAGCATCACAA 59.932 40.000 21.47 0.00 0.00 3.33
2047 2334 4.581409 CACCATGGATTCAATAGCATCACA 59.419 41.667 21.47 0.00 0.00 3.58
2048 2335 4.022589 CCACCATGGATTCAATAGCATCAC 60.023 45.833 21.47 0.00 40.96 3.06
2062 2349 1.275666 ACGAATCAGTCCACCATGGA 58.724 50.000 21.47 0.00 45.98 3.41
2070 2357 0.798776 CCAGCACAACGAATCAGTCC 59.201 55.000 0.00 0.00 0.00 3.85
2361 2648 9.695526 CTAAGACTCTCTTTCAATCTCCATATG 57.304 37.037 0.00 0.00 37.89 1.78
2392 2679 3.637229 ACTACATCCTCGTGGTCCATAAG 59.363 47.826 2.99 0.00 34.23 1.73
2441 2728 5.533482 TCTTGACAAGAGAGCTAACAGTTC 58.467 41.667 13.99 0.00 32.71 3.01
2501 2788 2.029918 GGGAAGCAACTTTACTGCCTTG 60.030 50.000 0.00 0.00 40.86 3.61
2753 3040 9.781425 ACTTCCACTGATAATGGAGATATATCT 57.219 33.333 15.26 15.26 46.85 1.98
2857 3144 5.877012 CACATTTGCAGATCTTAGGTACAGT 59.123 40.000 0.00 0.00 0.00 3.55
2858 3145 6.108687 TCACATTTGCAGATCTTAGGTACAG 58.891 40.000 0.00 0.00 0.00 2.74
2859 3146 6.048732 TCACATTTGCAGATCTTAGGTACA 57.951 37.500 0.00 0.00 0.00 2.90
2860 3147 8.662781 TTATCACATTTGCAGATCTTAGGTAC 57.337 34.615 0.00 0.00 0.00 3.34
2861 3148 9.679661 TTTTATCACATTTGCAGATCTTAGGTA 57.320 29.630 0.00 0.00 0.00 3.08
2862 3149 8.579850 TTTTATCACATTTGCAGATCTTAGGT 57.420 30.769 0.00 0.00 0.00 3.08
2863 3150 9.459640 CATTTTATCACATTTGCAGATCTTAGG 57.540 33.333 0.00 0.00 0.00 2.69
2864 3151 8.965172 GCATTTTATCACATTTGCAGATCTTAG 58.035 33.333 0.00 0.00 0.00 2.18
2865 3152 8.468399 TGCATTTTATCACATTTGCAGATCTTA 58.532 29.630 0.00 0.00 35.36 2.10
2866 3153 7.324935 TGCATTTTATCACATTTGCAGATCTT 58.675 30.769 0.00 0.00 35.36 2.40
2867 3154 6.869695 TGCATTTTATCACATTTGCAGATCT 58.130 32.000 0.00 0.00 35.36 2.75
2872 3159 6.631962 TGATCTGCATTTTATCACATTTGCA 58.368 32.000 0.00 0.00 37.73 4.08
2873 3160 7.709269 ATGATCTGCATTTTATCACATTTGC 57.291 32.000 0.00 0.00 31.73 3.68
2874 3161 8.547894 CCAATGATCTGCATTTTATCACATTTG 58.452 33.333 0.00 0.00 44.68 2.32
2875 3162 8.262227 ACCAATGATCTGCATTTTATCACATTT 58.738 29.630 0.00 0.00 44.68 2.32
2882 3169 7.068962 TGTCATCACCAATGATCTGCATTTTAT 59.931 33.333 0.00 0.00 44.68 1.40
2895 3182 1.665679 GTACCGCTGTCATCACCAATG 59.334 52.381 0.00 0.00 36.65 2.82
2910 3197 1.071605 GCTGCTTTCTCACAGTACCG 58.928 55.000 0.00 0.00 36.26 4.02
3390 3677 2.034221 AAACCTCCTCCCTTGCGC 59.966 61.111 0.00 0.00 0.00 6.09
3432 3719 4.669842 TTGCTCTGCGCTGCGAGT 62.670 61.111 28.07 0.00 40.11 4.18
3463 3750 2.637872 TGAAGACCGGGAGAAAGTGAAT 59.362 45.455 6.32 0.00 0.00 2.57
3467 3754 1.718280 AGTGAAGACCGGGAGAAAGT 58.282 50.000 6.32 0.00 0.00 2.66
3653 3940 0.254462 TGAGGCTCACACACAACCAA 59.746 50.000 14.43 0.00 0.00 3.67
3654 3941 0.473755 ATGAGGCTCACACACAACCA 59.526 50.000 21.37 0.00 0.00 3.67
3655 3942 0.877071 CATGAGGCTCACACACAACC 59.123 55.000 21.37 0.00 0.00 3.77
3656 3943 0.239347 GCATGAGGCTCACACACAAC 59.761 55.000 21.37 0.47 40.25 3.32
3786 4081 3.186001 GCATCAGGAATCAGCATTAGTCG 59.814 47.826 0.00 0.00 0.00 4.18
3915 4210 1.941403 ATGGCTGCCCAATGCTAGGT 61.941 55.000 17.53 0.00 46.14 3.08
3916 4211 1.152610 ATGGCTGCCCAATGCTAGG 60.153 57.895 17.53 0.00 46.14 3.02
3925 4220 3.446570 GTGTGCTCATGGCTGCCC 61.447 66.667 17.53 0.00 42.39 5.36
3974 4270 1.250840 ATTTGGAGGCTGCGTTTCCC 61.251 55.000 0.35 3.46 0.00 3.97
3980 4276 2.083774 TGAACTTATTTGGAGGCTGCG 58.916 47.619 0.35 0.00 0.00 5.18
3993 4290 3.876914 CTGCTGTGTGTTTCCTGAACTTA 59.123 43.478 0.00 0.00 39.08 2.24
3994 4291 2.684881 CTGCTGTGTGTTTCCTGAACTT 59.315 45.455 0.00 0.00 39.08 2.66
3996 4293 2.017049 ACTGCTGTGTGTTTCCTGAAC 58.983 47.619 0.00 0.00 38.78 3.18
4003 4300 4.882671 CAGTAGAAACTGCTGTGTGTTT 57.117 40.909 8.30 0.00 46.28 2.83
4106 4403 4.682778 TTATGGGACGAAGGGAGTAATG 57.317 45.455 0.00 0.00 0.00 1.90
4110 4407 5.842328 TGTTATATTATGGGACGAAGGGAGT 59.158 40.000 0.00 0.00 0.00 3.85
4111 4408 6.354794 TGTTATATTATGGGACGAAGGGAG 57.645 41.667 0.00 0.00 0.00 4.30
4112 4409 5.279809 GCTGTTATATTATGGGACGAAGGGA 60.280 44.000 0.00 0.00 0.00 4.20
4113 4410 4.935808 GCTGTTATATTATGGGACGAAGGG 59.064 45.833 0.00 0.00 0.00 3.95
4114 4411 4.625742 CGCTGTTATATTATGGGACGAAGG 59.374 45.833 0.00 0.00 0.00 3.46
4115 4412 5.227908 ACGCTGTTATATTATGGGACGAAG 58.772 41.667 0.00 0.00 0.00 3.79
4116 4413 5.204409 ACGCTGTTATATTATGGGACGAA 57.796 39.130 0.00 0.00 0.00 3.85
4117 4414 4.859304 ACGCTGTTATATTATGGGACGA 57.141 40.909 0.00 0.00 0.00 4.20
4118 4415 5.917541 AAACGCTGTTATATTATGGGACG 57.082 39.130 0.00 0.00 0.00 4.79
4119 4416 9.442033 GTTAAAAACGCTGTTATATTATGGGAC 57.558 33.333 0.00 0.00 0.00 4.46
4120 4417 9.175312 TGTTAAAAACGCTGTTATATTATGGGA 57.825 29.630 0.00 0.00 0.00 4.37
4121 4418 9.228636 GTGTTAAAAACGCTGTTATATTATGGG 57.771 33.333 0.00 0.00 38.81 4.00
4163 4460 8.714906 CCCTCCGTCCCATAATATAAGAATATT 58.285 37.037 0.00 0.00 40.59 1.28
4164 4461 8.071854 TCCCTCCGTCCCATAATATAAGAATAT 58.928 37.037 0.00 0.00 0.00 1.28
4165 4462 7.424172 TCCCTCCGTCCCATAATATAAGAATA 58.576 38.462 0.00 0.00 0.00 1.75
4166 4463 6.269194 TCCCTCCGTCCCATAATATAAGAAT 58.731 40.000 0.00 0.00 0.00 2.40
4167 4464 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
4168 4465 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4169 4466 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
4170 4467 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4171 4468 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4172 4469 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4173 4470 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
4174 4471 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4175 4472 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4176 4473 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4177 4474 2.172717 CAAAATACTCCCTCCGTCCCAT 59.827 50.000 0.00 0.00 0.00 4.00
4178 4475 1.557832 CAAAATACTCCCTCCGTCCCA 59.442 52.381 0.00 0.00 0.00 4.37
4179 4476 1.746171 GCAAAATACTCCCTCCGTCCC 60.746 57.143 0.00 0.00 0.00 4.46
4180 4477 1.209747 AGCAAAATACTCCCTCCGTCC 59.790 52.381 0.00 0.00 0.00 4.79
4181 4478 2.693267 AGCAAAATACTCCCTCCGTC 57.307 50.000 0.00 0.00 0.00 4.79
4182 4479 4.772886 AATAGCAAAATACTCCCTCCGT 57.227 40.909 0.00 0.00 0.00 4.69
4183 4480 5.123227 TGAAATAGCAAAATACTCCCTCCG 58.877 41.667 0.00 0.00 0.00 4.63
4184 4481 5.532779 CCTGAAATAGCAAAATACTCCCTCC 59.467 44.000 0.00 0.00 0.00 4.30
4185 4482 6.122964 ACCTGAAATAGCAAAATACTCCCTC 58.877 40.000 0.00 0.00 0.00 4.30
4186 4483 6.079712 ACCTGAAATAGCAAAATACTCCCT 57.920 37.500 0.00 0.00 0.00 4.20
4187 4484 6.564328 CAACCTGAAATAGCAAAATACTCCC 58.436 40.000 0.00 0.00 0.00 4.30
4188 4485 6.036470 GCAACCTGAAATAGCAAAATACTCC 58.964 40.000 0.00 0.00 0.00 3.85
4189 4486 6.856895 AGCAACCTGAAATAGCAAAATACTC 58.143 36.000 0.00 0.00 0.00 2.59
4190 4487 6.840780 AGCAACCTGAAATAGCAAAATACT 57.159 33.333 0.00 0.00 0.00 2.12
4191 4488 6.868339 ACAAGCAACCTGAAATAGCAAAATAC 59.132 34.615 0.00 0.00 0.00 1.89
4192 4489 6.991938 ACAAGCAACCTGAAATAGCAAAATA 58.008 32.000 0.00 0.00 0.00 1.40
4193 4490 5.857268 ACAAGCAACCTGAAATAGCAAAAT 58.143 33.333 0.00 0.00 0.00 1.82
4242 4539 4.243270 ACGGTACACTTGAGAATAACAGC 58.757 43.478 0.00 0.00 0.00 4.40
4557 4870 6.474140 TTCTAGTGTGTTAACTTCCACAGA 57.526 37.500 18.93 16.25 41.89 3.41
4584 4897 9.203421 CGTTAGCCAAATACAACTCATATCATA 57.797 33.333 0.00 0.00 0.00 2.15
4585 4898 7.715249 ACGTTAGCCAAATACAACTCATATCAT 59.285 33.333 0.00 0.00 0.00 2.45
4586 4899 7.045416 ACGTTAGCCAAATACAACTCATATCA 58.955 34.615 0.00 0.00 0.00 2.15
4587 4900 7.478520 ACGTTAGCCAAATACAACTCATATC 57.521 36.000 0.00 0.00 0.00 1.63
4588 4901 7.859325 AACGTTAGCCAAATACAACTCATAT 57.141 32.000 0.00 0.00 0.00 1.78
4589 4902 7.675962 AAACGTTAGCCAAATACAACTCATA 57.324 32.000 0.00 0.00 0.00 2.15
4590 4903 6.569179 AAACGTTAGCCAAATACAACTCAT 57.431 33.333 0.00 0.00 0.00 2.90
4591 4904 6.380095 AAAACGTTAGCCAAATACAACTCA 57.620 33.333 0.00 0.00 0.00 3.41
4617 4930 9.733556 TCCTTTTATTAATCAACACAGCTCTTA 57.266 29.630 0.00 0.00 0.00 2.10
4618 4931 8.635765 TCCTTTTATTAATCAACACAGCTCTT 57.364 30.769 0.00 0.00 0.00 2.85
4619 4932 8.814038 ATCCTTTTATTAATCAACACAGCTCT 57.186 30.769 0.00 0.00 0.00 4.09
4621 4934 9.905713 TCTATCCTTTTATTAATCAACACAGCT 57.094 29.630 0.00 0.00 0.00 4.24
4637 4950 9.898152 CTCTTCCACTCTTAAATCTATCCTTTT 57.102 33.333 0.00 0.00 0.00 2.27
4638 4951 9.273137 TCTCTTCCACTCTTAAATCTATCCTTT 57.727 33.333 0.00 0.00 0.00 3.11
4639 4952 8.846423 TCTCTTCCACTCTTAAATCTATCCTT 57.154 34.615 0.00 0.00 0.00 3.36
4640 4953 8.869109 CATCTCTTCCACTCTTAAATCTATCCT 58.131 37.037 0.00 0.00 0.00 3.24
4641 4954 8.646900 ACATCTCTTCCACTCTTAAATCTATCC 58.353 37.037 0.00 0.00 0.00 2.59
4642 4955 9.691362 GACATCTCTTCCACTCTTAAATCTATC 57.309 37.037 0.00 0.00 0.00 2.08
4643 4956 9.432982 AGACATCTCTTCCACTCTTAAATCTAT 57.567 33.333 0.00 0.00 0.00 1.98
4644 4957 8.830915 AGACATCTCTTCCACTCTTAAATCTA 57.169 34.615 0.00 0.00 0.00 1.98
4645 4958 7.147742 GGAGACATCTCTTCCACTCTTAAATCT 60.148 40.741 8.74 0.00 42.48 2.40
4646 4959 6.983890 GGAGACATCTCTTCCACTCTTAAATC 59.016 42.308 8.74 0.00 42.48 2.17
4647 4960 6.671779 AGGAGACATCTCTTCCACTCTTAAAT 59.328 38.462 8.74 0.00 42.48 1.40
4648 4961 6.019748 AGGAGACATCTCTTCCACTCTTAAA 58.980 40.000 8.74 0.00 42.48 1.52
4649 4962 5.584913 AGGAGACATCTCTTCCACTCTTAA 58.415 41.667 8.74 0.00 42.48 1.85
4650 4963 5.197451 GAGGAGACATCTCTTCCACTCTTA 58.803 45.833 9.33 0.00 41.56 2.10
4651 4964 4.023291 GAGGAGACATCTCTTCCACTCTT 58.977 47.826 9.33 0.00 41.56 2.85
4652 4965 3.631250 GAGGAGACATCTCTTCCACTCT 58.369 50.000 9.33 0.00 41.56 3.24
4658 4971 2.166907 TGGGGAGGAGACATCTCTTC 57.833 55.000 11.56 11.56 45.18 2.87
4659 4972 2.649742 TTGGGGAGGAGACATCTCTT 57.350 50.000 8.74 0.76 42.48 2.85
4660 4973 2.249743 AGATTGGGGAGGAGACATCTCT 59.750 50.000 8.74 0.00 42.48 3.10
4661 4974 2.688477 AGATTGGGGAGGAGACATCTC 58.312 52.381 0.00 0.00 42.14 2.75
4662 4975 2.885388 AGATTGGGGAGGAGACATCT 57.115 50.000 0.00 0.00 0.00 2.90
4663 4976 2.774234 TGAAGATTGGGGAGGAGACATC 59.226 50.000 0.00 0.00 0.00 3.06
4664 4977 2.850833 TGAAGATTGGGGAGGAGACAT 58.149 47.619 0.00 0.00 0.00 3.06
4665 4978 2.342406 TGAAGATTGGGGAGGAGACA 57.658 50.000 0.00 0.00 0.00 3.41
4666 4979 2.507471 ACATGAAGATTGGGGAGGAGAC 59.493 50.000 0.00 0.00 0.00 3.36
4667 4980 2.850833 ACATGAAGATTGGGGAGGAGA 58.149 47.619 0.00 0.00 0.00 3.71
4668 4981 3.285484 CAACATGAAGATTGGGGAGGAG 58.715 50.000 0.00 0.00 0.00 3.69
4669 4982 2.621407 GCAACATGAAGATTGGGGAGGA 60.621 50.000 0.00 0.00 0.00 3.71
4670 4983 1.753073 GCAACATGAAGATTGGGGAGG 59.247 52.381 0.00 0.00 0.00 4.30
4671 4984 1.402968 CGCAACATGAAGATTGGGGAG 59.597 52.381 0.00 0.00 35.67 4.30
4672 4985 1.462616 CGCAACATGAAGATTGGGGA 58.537 50.000 0.00 0.00 35.67 4.81
4673 4986 0.179129 GCGCAACATGAAGATTGGGG 60.179 55.000 0.30 0.00 38.73 4.96
4674 4987 0.527113 TGCGCAACATGAAGATTGGG 59.473 50.000 8.16 2.95 40.64 4.12
4675 4988 2.572191 ATGCGCAACATGAAGATTGG 57.428 45.000 17.11 0.00 37.70 3.16
4676 4989 4.282950 ACTATGCGCAACATGAAGATTG 57.717 40.909 17.11 0.00 40.06 2.67
4677 4990 4.970662 AACTATGCGCAACATGAAGATT 57.029 36.364 17.11 0.00 40.06 2.40
4678 4991 5.118990 ACTAACTATGCGCAACATGAAGAT 58.881 37.500 17.11 0.00 40.06 2.40
4679 4992 4.503910 ACTAACTATGCGCAACATGAAGA 58.496 39.130 17.11 0.00 40.06 2.87
4680 4993 4.864916 ACTAACTATGCGCAACATGAAG 57.135 40.909 17.11 10.77 40.06 3.02
4681 4994 4.454161 ACAACTAACTATGCGCAACATGAA 59.546 37.500 17.11 0.00 40.06 2.57
4682 4995 4.000325 ACAACTAACTATGCGCAACATGA 59.000 39.130 17.11 0.00 40.06 3.07
4683 4996 4.090729 CACAACTAACTATGCGCAACATG 58.909 43.478 17.11 7.50 40.06 3.21
4684 4997 4.000325 TCACAACTAACTATGCGCAACAT 59.000 39.130 17.11 0.00 43.18 2.71
4685 4998 3.394719 TCACAACTAACTATGCGCAACA 58.605 40.909 17.11 4.17 0.00 3.33
4686 4999 4.151689 TCTTCACAACTAACTATGCGCAAC 59.848 41.667 17.11 0.00 0.00 4.17
4687 5000 4.311606 TCTTCACAACTAACTATGCGCAA 58.688 39.130 17.11 2.72 0.00 4.85
4688 5001 3.920446 TCTTCACAACTAACTATGCGCA 58.080 40.909 14.96 14.96 0.00 6.09
4689 5002 4.921470 TTCTTCACAACTAACTATGCGC 57.079 40.909 0.00 0.00 0.00 6.09
4690 5003 8.916654 CCTATATTCTTCACAACTAACTATGCG 58.083 37.037 0.00 0.00 0.00 4.73
4691 5004 9.982651 TCCTATATTCTTCACAACTAACTATGC 57.017 33.333 0.00 0.00 0.00 3.14
4694 5007 8.639761 GGCTCCTATATTCTTCACAACTAACTA 58.360 37.037 0.00 0.00 0.00 2.24
4695 5008 7.125811 TGGCTCCTATATTCTTCACAACTAACT 59.874 37.037 0.00 0.00 0.00 2.24
4696 5009 7.272978 TGGCTCCTATATTCTTCACAACTAAC 58.727 38.462 0.00 0.00 0.00 2.34
4697 5010 7.432148 TGGCTCCTATATTCTTCACAACTAA 57.568 36.000 0.00 0.00 0.00 2.24
4698 5011 7.432148 TTGGCTCCTATATTCTTCACAACTA 57.568 36.000 0.00 0.00 0.00 2.24
4699 5012 5.957771 TGGCTCCTATATTCTTCACAACT 57.042 39.130 0.00 0.00 0.00 3.16
4700 5013 6.767902 TCATTGGCTCCTATATTCTTCACAAC 59.232 38.462 0.00 0.00 0.00 3.32
4701 5014 6.767902 GTCATTGGCTCCTATATTCTTCACAA 59.232 38.462 0.00 0.00 0.00 3.33
4702 5015 6.126796 TGTCATTGGCTCCTATATTCTTCACA 60.127 38.462 0.00 0.00 0.00 3.58
4703 5016 6.291377 TGTCATTGGCTCCTATATTCTTCAC 58.709 40.000 0.00 0.00 0.00 3.18
4704 5017 6.499106 TGTCATTGGCTCCTATATTCTTCA 57.501 37.500 0.00 0.00 0.00 3.02
4705 5018 7.663081 TCATTGTCATTGGCTCCTATATTCTTC 59.337 37.037 0.00 0.00 0.00 2.87
4706 5019 7.520798 TCATTGTCATTGGCTCCTATATTCTT 58.479 34.615 0.00 0.00 0.00 2.52
4707 5020 7.083062 TCATTGTCATTGGCTCCTATATTCT 57.917 36.000 0.00 0.00 0.00 2.40
4708 5021 7.934855 ATCATTGTCATTGGCTCCTATATTC 57.065 36.000 0.00 0.00 0.00 1.75
4709 5022 9.812347 TTTATCATTGTCATTGGCTCCTATATT 57.188 29.630 0.00 0.00 0.00 1.28
4710 5023 9.986157 ATTTATCATTGTCATTGGCTCCTATAT 57.014 29.630 0.00 0.00 0.00 0.86
4711 5024 9.453572 GATTTATCATTGTCATTGGCTCCTATA 57.546 33.333 0.00 0.00 0.00 1.31
4712 5025 7.120285 CGATTTATCATTGTCATTGGCTCCTAT 59.880 37.037 0.00 0.00 0.00 2.57
4713 5026 6.427853 CGATTTATCATTGTCATTGGCTCCTA 59.572 38.462 0.00 0.00 0.00 2.94
4714 5027 5.240183 CGATTTATCATTGTCATTGGCTCCT 59.760 40.000 0.00 0.00 0.00 3.69
4715 5028 5.455392 CGATTTATCATTGTCATTGGCTCC 58.545 41.667 0.00 0.00 0.00 4.70
4716 5029 4.913924 GCGATTTATCATTGTCATTGGCTC 59.086 41.667 0.00 0.00 0.00 4.70
4717 5030 4.555313 CGCGATTTATCATTGTCATTGGCT 60.555 41.667 0.00 0.00 0.00 4.75
4718 5031 3.665409 CGCGATTTATCATTGTCATTGGC 59.335 43.478 0.00 0.00 0.00 4.52
4719 5032 4.671964 CACGCGATTTATCATTGTCATTGG 59.328 41.667 15.93 0.00 0.00 3.16
4720 5033 5.170092 CACACGCGATTTATCATTGTCATTG 59.830 40.000 15.93 0.00 0.00 2.82
4721 5034 5.265477 CACACGCGATTTATCATTGTCATT 58.735 37.500 15.93 0.00 0.00 2.57
4722 5035 4.786292 GCACACGCGATTTATCATTGTCAT 60.786 41.667 15.93 0.00 0.00 3.06
4723 5036 3.485051 GCACACGCGATTTATCATTGTCA 60.485 43.478 15.93 0.00 0.00 3.58
4724 5037 3.029074 GCACACGCGATTTATCATTGTC 58.971 45.455 15.93 0.00 0.00 3.18
4725 5038 2.418280 TGCACACGCGATTTATCATTGT 59.582 40.909 15.93 0.00 42.97 2.71
4726 5039 2.777845 GTGCACACGCGATTTATCATTG 59.222 45.455 15.93 0.00 42.97 2.82
4727 5040 2.418280 TGTGCACACGCGATTTATCATT 59.582 40.909 17.42 0.00 42.97 2.57
4728 5041 2.006169 TGTGCACACGCGATTTATCAT 58.994 42.857 17.42 0.00 42.97 2.45
4729 5042 1.433534 TGTGCACACGCGATTTATCA 58.566 45.000 17.42 2.10 42.97 2.15
4730 5043 2.365948 CATGTGCACACGCGATTTATC 58.634 47.619 24.37 0.00 42.97 1.75
4731 5044 1.531677 GCATGTGCACACGCGATTTAT 60.532 47.619 23.17 0.00 42.97 1.40
4732 5045 0.179202 GCATGTGCACACGCGATTTA 60.179 50.000 23.17 0.00 42.97 1.40
4733 5046 1.442520 GCATGTGCACACGCGATTT 60.443 52.632 23.17 0.85 42.97 2.17
4734 5047 2.176546 GCATGTGCACACGCGATT 59.823 55.556 23.17 1.71 42.97 3.34
4740 5053 4.705519 GTGGCCGCATGTGCACAC 62.706 66.667 24.37 9.77 42.21 3.82
4752 5065 1.702491 GATAACGACCTTGCGTGGCC 61.702 60.000 0.00 0.00 44.86 5.36
4753 5066 1.702491 GGATAACGACCTTGCGTGGC 61.702 60.000 0.00 0.00 44.86 5.01
4754 5067 2.380081 GGATAACGACCTTGCGTGG 58.620 57.895 0.00 0.00 44.86 4.94
4772 5085 4.446413 GTGGGGACTACCGGTGCG 62.446 72.222 19.93 10.99 41.60 5.34
4773 5086 4.446413 CGTGGGGACTACCGGTGC 62.446 72.222 19.93 6.35 41.60 5.01
4774 5087 4.446413 GCGTGGGGACTACCGGTG 62.446 72.222 19.93 10.05 41.60 4.94
4777 5090 2.948840 GAATCGCGTGGGGACTACCG 62.949 65.000 5.77 0.00 41.60 4.02
4778 5091 1.227176 GAATCGCGTGGGGACTACC 60.227 63.158 5.77 0.00 39.11 3.18
4779 5092 1.588139 CGAATCGCGTGGGGACTAC 60.588 63.158 5.77 0.00 34.64 2.73
4780 5093 2.802792 CGAATCGCGTGGGGACTA 59.197 61.111 5.77 0.00 34.64 2.59
4790 5103 1.355971 TTGGAGTTAGCACGAATCGC 58.644 50.000 1.15 0.00 0.00 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.