Multiple sequence alignment - TraesCS7A01G186000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G186000 chr7A 100.000 3214 0 0 1 3214 140657376 140654163 0.000000e+00 5936.0
1 TraesCS7A01G186000 chr7A 91.831 759 48 10 1 745 11785915 11786673 0.000000e+00 1046.0
2 TraesCS7A01G186000 chr7A 91.304 759 49 11 1 745 11819964 11820719 0.000000e+00 1020.0
3 TraesCS7A01G186000 chr7A 91.188 749 61 5 1 745 23271254 23272001 0.000000e+00 1013.0
4 TraesCS7A01G186000 chr7A 87.151 537 58 5 1062 1597 139422130 139422656 1.650000e-167 599.0
5 TraesCS7A01G186000 chr7A 82.822 489 56 17 2704 3184 139423981 139424449 2.310000e-111 412.0
6 TraesCS7A01G186000 chr7A 77.301 326 58 11 1677 1997 139422683 139422997 9.160000e-41 178.0
7 TraesCS7A01G186000 chr7D 93.230 1551 74 15 1677 3204 140310878 140309336 0.000000e+00 2254.0
8 TraesCS7A01G186000 chr7D 93.953 645 36 2 988 1629 140311535 140310891 0.000000e+00 972.0
9 TraesCS7A01G186000 chr7D 79.337 1176 150 50 2076 3184 139307407 139308556 0.000000e+00 739.0
10 TraesCS7A01G186000 chr7D 84.880 668 79 10 942 1597 139306246 139306903 0.000000e+00 654.0
11 TraesCS7A01G186000 chr7D 88.696 345 30 5 1159 1497 140317936 140317595 2.310000e-111 412.0
12 TraesCS7A01G186000 chr7D 84.635 384 56 2 1677 2060 140316999 140316619 2.340000e-101 379.0
13 TraesCS7A01G186000 chr7D 92.442 172 13 0 993 1164 140318144 140317973 2.480000e-61 246.0
14 TraesCS7A01G186000 chr7D 81.395 301 49 5 1035 1333 56293188 56292893 4.140000e-59 239.0
15 TraesCS7A01G186000 chr7D 76.396 394 71 15 1678 2060 139306931 139307313 3.270000e-45 193.0
16 TraesCS7A01G186000 chr7D 90.678 118 11 0 1486 1603 140317140 140317023 1.190000e-34 158.0
17 TraesCS7A01G186000 chr7D 87.931 58 5 1 2945 3002 140316128 140316073 2.070000e-07 67.6
18 TraesCS7A01G186000 chr3A 93.191 749 45 6 1 746 56723674 56724419 0.000000e+00 1096.0
19 TraesCS7A01G186000 chr4A 92.924 749 45 6 1 742 581286963 581286216 0.000000e+00 1083.0
20 TraesCS7A01G186000 chr4A 83.389 301 47 1 1035 1335 670976678 670976381 3.160000e-70 276.0
21 TraesCS7A01G186000 chr1A 91.744 751 52 9 1 746 536669053 536668308 0.000000e+00 1035.0
22 TraesCS7A01G186000 chr1A 91.678 745 53 5 1 742 572566807 572566069 0.000000e+00 1024.0
23 TraesCS7A01G186000 chr1A 91.270 756 56 9 1 749 459320941 459321693 0.000000e+00 1022.0
24 TraesCS7A01G186000 chr1A 99.091 110 1 0 744 853 124476773 124476664 7.030000e-47 198.0
25 TraesCS7A01G186000 chr5A 91.667 744 55 5 5 746 664306640 664305902 0.000000e+00 1024.0
26 TraesCS7A01G186000 chr7B 88.769 837 75 11 1681 2502 105510007 105509175 0.000000e+00 1007.0
27 TraesCS7A01G186000 chr7B 92.504 707 31 12 2520 3214 105508902 105508206 0.000000e+00 992.0
28 TraesCS7A01G186000 chr7B 88.387 775 62 17 850 1604 105510797 105510031 0.000000e+00 907.0
29 TraesCS7A01G186000 chr7B 91.652 575 39 4 1035 1603 105520649 105520078 0.000000e+00 787.0
30 TraesCS7A01G186000 chr7B 85.268 672 73 11 942 1597 104563556 104564217 0.000000e+00 669.0
31 TraesCS7A01G186000 chr7B 76.768 396 68 15 1677 2060 104564244 104564627 1.960000e-47 200.0
32 TraesCS7A01G186000 chr7B 94.737 38 2 0 993 1030 105520890 105520853 3.460000e-05 60.2
33 TraesCS7A01G186000 chr6B 83.077 260 29 12 2230 2485 111127750 111127502 4.170000e-54 222.0
34 TraesCS7A01G186000 chr6B 82.692 260 32 12 2230 2485 111137770 111137520 5.400000e-53 219.0
35 TraesCS7A01G186000 chr6B 82.692 260 32 12 2230 2485 111295954 111295704 5.400000e-53 219.0
36 TraesCS7A01G186000 chr6B 82.692 260 32 12 2230 2485 111385671 111385421 5.400000e-53 219.0
37 TraesCS7A01G186000 chr6B 82.625 259 32 12 2230 2485 111459048 111458800 1.940000e-52 217.0
38 TraesCS7A01G186000 chrUn 82.609 253 31 12 2230 2479 418146185 418146427 9.030000e-51 211.0
39 TraesCS7A01G186000 chr1B 85.784 204 20 6 892 1091 489500879 489501077 1.170000e-49 207.0
40 TraesCS7A01G186000 chr2A 95.000 120 5 1 744 862 205005128 205005009 1.520000e-43 187.0
41 TraesCS7A01G186000 chr4D 85.926 135 15 2 945 1077 36410432 36410564 1.200000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G186000 chr7A 140654163 140657376 3213 True 5936.000000 5936 100.000000 1 3214 1 chr7A.!!$R1 3213
1 TraesCS7A01G186000 chr7A 11785915 11786673 758 False 1046.000000 1046 91.831000 1 745 1 chr7A.!!$F1 744
2 TraesCS7A01G186000 chr7A 11819964 11820719 755 False 1020.000000 1020 91.304000 1 745 1 chr7A.!!$F2 744
3 TraesCS7A01G186000 chr7A 23271254 23272001 747 False 1013.000000 1013 91.188000 1 745 1 chr7A.!!$F3 744
4 TraesCS7A01G186000 chr7A 139422130 139424449 2319 False 396.333333 599 82.424667 1062 3184 3 chr7A.!!$F4 2122
5 TraesCS7A01G186000 chr7D 140309336 140311535 2199 True 1613.000000 2254 93.591500 988 3204 2 chr7D.!!$R2 2216
6 TraesCS7A01G186000 chr7D 139306246 139308556 2310 False 528.666667 739 80.204333 942 3184 3 chr7D.!!$F1 2242
7 TraesCS7A01G186000 chr7D 140316073 140318144 2071 True 252.520000 412 88.876400 993 3002 5 chr7D.!!$R3 2009
8 TraesCS7A01G186000 chr3A 56723674 56724419 745 False 1096.000000 1096 93.191000 1 746 1 chr3A.!!$F1 745
9 TraesCS7A01G186000 chr4A 581286216 581286963 747 True 1083.000000 1083 92.924000 1 742 1 chr4A.!!$R1 741
10 TraesCS7A01G186000 chr1A 536668308 536669053 745 True 1035.000000 1035 91.744000 1 746 1 chr1A.!!$R2 745
11 TraesCS7A01G186000 chr1A 572566069 572566807 738 True 1024.000000 1024 91.678000 1 742 1 chr1A.!!$R3 741
12 TraesCS7A01G186000 chr1A 459320941 459321693 752 False 1022.000000 1022 91.270000 1 749 1 chr1A.!!$F1 748
13 TraesCS7A01G186000 chr5A 664305902 664306640 738 True 1024.000000 1024 91.667000 5 746 1 chr5A.!!$R1 741
14 TraesCS7A01G186000 chr7B 105508206 105510797 2591 True 968.666667 1007 89.886667 850 3214 3 chr7B.!!$R1 2364
15 TraesCS7A01G186000 chr7B 104563556 104564627 1071 False 434.500000 669 81.018000 942 2060 2 chr7B.!!$F1 1118
16 TraesCS7A01G186000 chr7B 105520078 105520890 812 True 423.600000 787 93.194500 993 1603 2 chr7B.!!$R2 610

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 859 0.035439 TTCCCAGAAATCAGTCGGGC 60.035 55.0 0.00 0.00 36.79 6.13 F
835 861 0.322456 CCCAGAAATCAGTCGGGCAA 60.322 55.0 0.00 0.00 32.04 4.52 F
1647 2404 0.744874 ACGAGGGATATGGACACGTG 59.255 55.0 15.48 15.48 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1652 2409 0.247460 CTGGATGGTTGTCTGCTCGA 59.753 55.0 0.0 0.0 0.00 4.04 R
1657 2414 0.391661 CGTCCCTGGATGGTTGTCTG 60.392 60.0 0.0 0.0 0.00 3.51 R
3184 4670 1.985473 ATTGCTTGTTGCTCTGGACA 58.015 45.0 0.0 0.0 43.37 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 107 3.948719 GACAACGCCTCCCCCACA 61.949 66.667 0.00 0.00 0.00 4.17
106 108 3.256960 ACAACGCCTCCCCCACAT 61.257 61.111 0.00 0.00 0.00 3.21
271 273 2.123077 CCCTGGAGGAGATCGCCT 60.123 66.667 18.95 18.95 42.17 5.52
339 344 3.823330 GACGATGACGACGCCCCT 61.823 66.667 0.00 0.00 42.66 4.79
516 533 4.828296 GGAGGGAGACGGCGGGTA 62.828 72.222 13.24 0.00 0.00 3.69
759 785 2.301577 CCTTAAGGCACGAGAGGAAG 57.698 55.000 9.00 0.00 0.00 3.46
760 786 1.646189 CTTAAGGCACGAGAGGAAGC 58.354 55.000 0.00 0.00 0.00 3.86
761 787 0.108804 TTAAGGCACGAGAGGAAGCG 60.109 55.000 0.00 0.00 0.00 4.68
762 788 1.945354 TAAGGCACGAGAGGAAGCGG 61.945 60.000 0.00 0.00 0.00 5.52
763 789 4.070552 GGCACGAGAGGAAGCGGT 62.071 66.667 0.00 0.00 0.00 5.68
764 790 2.811317 GCACGAGAGGAAGCGGTG 60.811 66.667 0.00 0.00 0.00 4.94
765 791 2.811317 CACGAGAGGAAGCGGTGC 60.811 66.667 0.00 0.00 0.00 5.01
766 792 4.070552 ACGAGAGGAAGCGGTGCC 62.071 66.667 2.36 2.36 0.00 5.01
767 793 3.764466 CGAGAGGAAGCGGTGCCT 61.764 66.667 15.90 15.90 37.18 4.75
768 794 2.125350 GAGAGGAAGCGGTGCCTG 60.125 66.667 21.75 0.00 33.84 4.85
769 795 3.672295 GAGAGGAAGCGGTGCCTGG 62.672 68.421 21.75 0.00 33.84 4.45
770 796 4.785453 GAGGAAGCGGTGCCTGGG 62.785 72.222 21.75 0.00 33.84 4.45
776 802 3.792736 GCGGTGCCTGGGTCCATA 61.793 66.667 0.00 0.00 0.00 2.74
777 803 2.189521 CGGTGCCTGGGTCCATAC 59.810 66.667 0.00 0.00 0.00 2.39
778 804 2.595655 GGTGCCTGGGTCCATACC 59.404 66.667 0.00 0.00 45.97 2.73
786 812 2.025727 GGTCCATACCGAGACGCG 59.974 66.667 3.53 3.53 35.62 6.01
787 813 2.768492 GGTCCATACCGAGACGCGT 61.768 63.158 13.85 13.85 35.62 6.01
788 814 1.585521 GTCCATACCGAGACGCGTG 60.586 63.158 20.70 4.12 38.67 5.34
789 815 2.278596 CCATACCGAGACGCGTGG 60.279 66.667 20.70 15.56 38.67 4.94
790 816 2.954868 CATACCGAGACGCGTGGC 60.955 66.667 20.70 7.26 38.67 5.01
802 828 4.873129 CGTGGCGATCGTGGGGAG 62.873 72.222 17.81 0.16 0.00 4.30
808 834 4.899239 GATCGTGGGGAGCGGCTG 62.899 72.222 7.50 0.00 0.00 4.85
811 837 4.473520 CGTGGGGAGCGGCTGATT 62.474 66.667 7.50 0.00 0.00 2.57
812 838 2.044946 GTGGGGAGCGGCTGATTT 60.045 61.111 7.50 0.00 0.00 2.17
813 839 2.045045 TGGGGAGCGGCTGATTTG 60.045 61.111 7.50 0.00 0.00 2.32
814 840 2.044946 GGGGAGCGGCTGATTTGT 60.045 61.111 7.50 0.00 0.00 2.83
815 841 1.678970 GGGGAGCGGCTGATTTGTT 60.679 57.895 7.50 0.00 0.00 2.83
816 842 1.657751 GGGGAGCGGCTGATTTGTTC 61.658 60.000 7.50 0.00 0.00 3.18
817 843 1.657751 GGGAGCGGCTGATTTGTTCC 61.658 60.000 7.50 0.00 0.00 3.62
818 844 1.657751 GGAGCGGCTGATTTGTTCCC 61.658 60.000 7.50 0.00 0.00 3.97
819 845 0.960364 GAGCGGCTGATTTGTTCCCA 60.960 55.000 7.50 0.00 0.00 4.37
820 846 0.962356 AGCGGCTGATTTGTTCCCAG 60.962 55.000 0.00 0.00 0.00 4.45
821 847 0.960364 GCGGCTGATTTGTTCCCAGA 60.960 55.000 0.00 0.00 0.00 3.86
822 848 1.533625 CGGCTGATTTGTTCCCAGAA 58.466 50.000 0.00 0.00 0.00 3.02
823 849 1.885887 CGGCTGATTTGTTCCCAGAAA 59.114 47.619 0.00 0.00 0.00 2.52
824 850 2.493278 CGGCTGATTTGTTCCCAGAAAT 59.507 45.455 0.00 0.00 0.00 2.17
825 851 3.428045 CGGCTGATTTGTTCCCAGAAATC 60.428 47.826 0.00 0.00 41.19 2.17
826 852 3.511146 GGCTGATTTGTTCCCAGAAATCA 59.489 43.478 0.00 0.00 45.70 2.57
829 855 5.964958 TGATTTGTTCCCAGAAATCAGTC 57.035 39.130 0.00 0.00 44.01 3.51
830 856 4.455533 TGATTTGTTCCCAGAAATCAGTCG 59.544 41.667 0.00 0.00 44.01 4.18
831 857 2.472695 TGTTCCCAGAAATCAGTCGG 57.527 50.000 0.00 0.00 0.00 4.79
832 858 1.003118 TGTTCCCAGAAATCAGTCGGG 59.997 52.381 0.00 0.00 38.34 5.14
833 859 0.035439 TTCCCAGAAATCAGTCGGGC 60.035 55.000 0.00 0.00 36.79 6.13
834 860 1.198094 TCCCAGAAATCAGTCGGGCA 61.198 55.000 0.00 0.00 36.79 5.36
835 861 0.322456 CCCAGAAATCAGTCGGGCAA 60.322 55.000 0.00 0.00 32.04 4.52
836 862 1.683011 CCCAGAAATCAGTCGGGCAAT 60.683 52.381 0.00 0.00 32.04 3.56
837 863 2.094675 CCAGAAATCAGTCGGGCAATT 58.905 47.619 0.00 0.00 0.00 2.32
838 864 2.493278 CCAGAAATCAGTCGGGCAATTT 59.507 45.455 0.00 0.00 0.00 1.82
839 865 3.694072 CCAGAAATCAGTCGGGCAATTTA 59.306 43.478 0.00 0.00 0.00 1.40
840 866 4.157656 CCAGAAATCAGTCGGGCAATTTAA 59.842 41.667 0.00 0.00 0.00 1.52
841 867 5.336372 CCAGAAATCAGTCGGGCAATTTAAA 60.336 40.000 0.00 0.00 0.00 1.52
842 868 5.801947 CAGAAATCAGTCGGGCAATTTAAAG 59.198 40.000 0.00 0.00 0.00 1.85
843 869 5.710099 AGAAATCAGTCGGGCAATTTAAAGA 59.290 36.000 0.00 0.00 0.00 2.52
844 870 5.567138 AATCAGTCGGGCAATTTAAAGAG 57.433 39.130 0.00 0.00 0.00 2.85
845 871 4.280436 TCAGTCGGGCAATTTAAAGAGA 57.720 40.909 0.00 0.00 0.00 3.10
846 872 4.843728 TCAGTCGGGCAATTTAAAGAGAT 58.156 39.130 0.00 0.00 0.00 2.75
847 873 5.253330 TCAGTCGGGCAATTTAAAGAGATT 58.747 37.500 0.00 0.00 0.00 2.40
848 874 5.710099 TCAGTCGGGCAATTTAAAGAGATTT 59.290 36.000 0.00 0.00 0.00 2.17
871 897 3.444388 CCTTCGTATATAGCCTGGACTCC 59.556 52.174 0.00 0.00 0.00 3.85
882 908 1.072965 CCTGGACTCCACAGAAAAGCT 59.927 52.381 0.00 0.00 38.20 3.74
888 914 1.275291 CTCCACAGAAAAGCTACCGGA 59.725 52.381 9.46 0.00 0.00 5.14
889 915 1.695242 TCCACAGAAAAGCTACCGGAA 59.305 47.619 9.46 0.00 0.00 4.30
890 916 2.105134 TCCACAGAAAAGCTACCGGAAA 59.895 45.455 9.46 0.00 0.00 3.13
891 917 2.882137 CCACAGAAAAGCTACCGGAAAA 59.118 45.455 9.46 0.00 0.00 2.29
936 962 5.570234 GGAACGAAGTAGTTGAGAGATCT 57.430 43.478 0.00 0.00 45.00 2.75
937 963 5.956642 GGAACGAAGTAGTTGAGAGATCTT 58.043 41.667 0.00 0.00 45.00 2.40
974 1006 3.314080 GGACTCGTCCTAAGATCTCTGTG 59.686 52.174 8.82 0.00 46.16 3.66
1322 1607 2.179517 CGACGAGTGCTCCCTGAC 59.820 66.667 0.00 0.00 0.00 3.51
1394 1679 1.670015 GAGAAAACCCGACCGTCCT 59.330 57.895 0.00 0.00 0.00 3.85
1586 2343 2.159234 CGCTCTTCAAAGGAAAGCTCTG 59.841 50.000 0.00 0.00 31.35 3.35
1609 2366 1.316706 CCTCCTCGACACAGTCCTCC 61.317 65.000 0.00 0.00 0.00 4.30
1619 2376 0.896019 ACAGTCCTCCTCGACACAGG 60.896 60.000 0.00 0.00 35.07 4.00
1629 2386 0.954449 TCGACACAGGAGACGAGGAC 60.954 60.000 0.00 0.00 0.00 3.85
1630 2387 1.502640 GACACAGGAGACGAGGACG 59.497 63.158 0.00 0.00 45.75 4.79
1631 2388 0.954449 GACACAGGAGACGAGGACGA 60.954 60.000 0.00 0.00 42.66 4.20
1632 2389 0.956410 ACACAGGAGACGAGGACGAG 60.956 60.000 0.00 0.00 42.66 4.18
1633 2390 1.377463 ACAGGAGACGAGGACGAGG 60.377 63.158 0.00 0.00 42.66 4.63
1634 2391 2.115911 CAGGAGACGAGGACGAGGG 61.116 68.421 0.00 0.00 42.66 4.30
1644 2401 1.614413 GAGGACGAGGGATATGGACAC 59.386 57.143 0.00 0.00 0.00 3.67
1647 2404 0.744874 ACGAGGGATATGGACACGTG 59.255 55.000 15.48 15.48 0.00 4.49
1648 2405 1.029681 CGAGGGATATGGACACGTGA 58.970 55.000 25.01 0.00 0.00 4.35
1649 2406 1.001268 CGAGGGATATGGACACGTGAG 60.001 57.143 25.01 0.00 0.00 3.51
1650 2407 0.753262 AGGGATATGGACACGTGAGC 59.247 55.000 25.01 13.48 0.00 4.26
1651 2408 0.753262 GGGATATGGACACGTGAGCT 59.247 55.000 25.01 0.00 0.00 4.09
1652 2409 1.139058 GGGATATGGACACGTGAGCTT 59.861 52.381 25.01 0.00 0.00 3.74
1653 2410 2.474816 GGATATGGACACGTGAGCTTC 58.525 52.381 25.01 9.10 0.00 3.86
1654 2411 2.120232 GATATGGACACGTGAGCTTCG 58.880 52.381 25.01 9.99 0.00 3.79
1655 2412 1.170442 TATGGACACGTGAGCTTCGA 58.830 50.000 25.01 6.82 0.00 3.71
1656 2413 0.109086 ATGGACACGTGAGCTTCGAG 60.109 55.000 25.01 12.10 0.00 4.04
1657 2414 2.089349 GGACACGTGAGCTTCGAGC 61.089 63.158 25.01 0.00 42.84 5.03
1658 2415 1.371758 GACACGTGAGCTTCGAGCA 60.372 57.895 25.01 0.00 45.56 4.26
1659 2416 1.340657 GACACGTGAGCTTCGAGCAG 61.341 60.000 25.01 7.74 45.56 4.24
1660 2417 1.081175 CACGTGAGCTTCGAGCAGA 60.081 57.895 10.90 0.00 45.56 4.26
1661 2418 1.081108 ACGTGAGCTTCGAGCAGAC 60.081 57.895 16.77 4.63 45.56 3.51
1662 2419 1.081175 CGTGAGCTTCGAGCAGACA 60.081 57.895 6.43 4.33 45.56 3.41
1663 2420 0.664466 CGTGAGCTTCGAGCAGACAA 60.664 55.000 6.43 0.00 45.56 3.18
1664 2421 0.787183 GTGAGCTTCGAGCAGACAAC 59.213 55.000 9.09 0.00 45.56 3.32
1665 2422 0.319900 TGAGCTTCGAGCAGACAACC 60.320 55.000 9.09 0.00 45.56 3.77
1666 2423 0.319900 GAGCTTCGAGCAGACAACCA 60.320 55.000 9.09 0.00 45.56 3.67
1667 2424 0.322975 AGCTTCGAGCAGACAACCAT 59.677 50.000 9.09 0.00 45.56 3.55
1668 2425 0.723981 GCTTCGAGCAGACAACCATC 59.276 55.000 2.53 0.00 41.89 3.51
1669 2426 1.363744 CTTCGAGCAGACAACCATCC 58.636 55.000 0.00 0.00 0.00 3.51
1670 2427 0.684535 TTCGAGCAGACAACCATCCA 59.315 50.000 0.00 0.00 0.00 3.41
1671 2428 0.247460 TCGAGCAGACAACCATCCAG 59.753 55.000 0.00 0.00 0.00 3.86
1672 2429 0.742281 CGAGCAGACAACCATCCAGG 60.742 60.000 0.00 0.00 45.67 4.45
1673 2430 0.393537 GAGCAGACAACCATCCAGGG 60.394 60.000 0.00 0.00 43.89 4.45
1674 2431 0.842030 AGCAGACAACCATCCAGGGA 60.842 55.000 0.00 0.00 43.89 4.20
1675 2432 0.678048 GCAGACAACCATCCAGGGAC 60.678 60.000 0.00 0.00 43.89 4.46
1727 2484 0.842030 AGCAGACAACCATCCAGGGA 60.842 55.000 0.00 0.00 43.89 4.20
1754 2517 2.741211 GCCGGGTTTGAGGACGAC 60.741 66.667 2.18 0.00 0.00 4.34
1766 2529 5.677319 TTGAGGACGACTTTGATCCTTAT 57.323 39.130 0.00 0.00 43.12 1.73
1862 2625 0.033601 ACCTGCCGCCAATATTTCCA 60.034 50.000 0.00 0.00 0.00 3.53
1908 2671 2.559231 ACTCGACTCTTCAAGGTCTTCC 59.441 50.000 4.98 0.00 0.00 3.46
1964 2733 1.100510 CCGAGGTCGATAGGTTGACA 58.899 55.000 0.00 0.00 40.03 3.58
1968 2737 1.192428 GGTCGATAGGTTGACAGGGT 58.808 55.000 0.00 0.00 40.03 4.34
2072 2925 2.273370 TCTACTTCATGAACGGCGAC 57.727 50.000 16.62 7.98 0.00 5.19
2226 3082 5.406649 CAGAGACTTGAGTTAAGCTAGGTG 58.593 45.833 0.00 0.00 40.16 4.00
2227 3083 4.464597 AGAGACTTGAGTTAAGCTAGGTGG 59.535 45.833 0.00 0.00 40.16 4.61
2229 3085 3.514309 GACTTGAGTTAAGCTAGGTGGGA 59.486 47.826 0.00 0.00 40.16 4.37
2262 3122 8.164070 ACCAGTTAAGATTTCCTTAGATGTTGT 58.836 33.333 0.00 0.00 38.48 3.32
2321 3182 5.499004 ACCCATTAGACACTTCTAAAGCA 57.501 39.130 0.00 0.00 45.52 3.91
2340 3222 3.307674 GCATATGCTCGAGACTGAAGAG 58.692 50.000 20.64 0.00 38.21 2.85
2579 3740 8.859236 ACATGTGATATATCATCAGAAAAGGG 57.141 34.615 18.18 3.24 39.30 3.95
2629 3790 7.441890 TTTGATTGCGAAATAGTGAGGTAAA 57.558 32.000 0.00 0.00 0.00 2.01
2630 3791 7.624360 TTGATTGCGAAATAGTGAGGTAAAT 57.376 32.000 0.00 0.00 0.00 1.40
2631 3792 8.725405 TTGATTGCGAAATAGTGAGGTAAATA 57.275 30.769 0.00 0.00 0.00 1.40
2632 3793 8.902540 TGATTGCGAAATAGTGAGGTAAATAT 57.097 30.769 0.00 0.00 0.00 1.28
2752 4195 7.706159 TCAAATCCATTGAGTTCATATTTCGG 58.294 34.615 0.00 0.00 43.08 4.30
2818 4262 8.387190 TGGATCATGATGAAATGTGATAGTTC 57.613 34.615 14.30 0.00 30.93 3.01
2819 4263 7.994334 TGGATCATGATGAAATGTGATAGTTCA 59.006 33.333 14.30 0.00 46.10 3.18
3184 4670 2.884639 GGTGTGCTCATTACCAAACACT 59.115 45.455 0.00 0.00 38.34 3.55
3186 4672 3.315191 GTGTGCTCATTACCAAACACTGT 59.685 43.478 0.00 0.00 36.01 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
105 107 1.810532 GACGAGGACGAAGAGGCAT 59.189 57.895 0.00 0.00 42.66 4.40
106 108 2.687805 CGACGAGGACGAAGAGGCA 61.688 63.158 0.00 0.00 42.66 4.75
110 112 2.396955 GGCTCGACGAGGACGAAGA 61.397 63.158 25.31 0.00 42.66 2.87
253 255 2.444895 GGCGATCTCCTCCAGGGT 60.445 66.667 0.00 0.00 36.25 4.34
302 304 4.039357 CGCTGAGGACCACGACGT 62.039 66.667 0.00 0.00 0.00 4.34
369 374 1.000396 GTCCCTGCTGCATCCCTTT 60.000 57.895 1.31 0.00 0.00 3.11
419 424 3.318539 TAGTCACTGCCGTCGTCGC 62.319 63.158 0.00 0.00 35.54 5.19
499 516 2.703675 TATACCCGCCGTCTCCCTCC 62.704 65.000 0.00 0.00 0.00 4.30
515 532 2.483538 GGAAAAACTACCGCGGGCTATA 60.484 50.000 31.76 11.82 0.00 1.31
516 533 1.660167 GAAAAACTACCGCGGGCTAT 58.340 50.000 31.76 11.18 0.00 2.97
652 675 1.593787 CACTGAGGGCGTGATGTCT 59.406 57.895 0.00 0.00 34.35 3.41
654 677 2.046892 GCACTGAGGGCGTGATGT 60.047 61.111 0.00 0.00 34.35 3.06
742 768 0.108804 CGCTTCCTCTCGTGCCTTAA 60.109 55.000 0.00 0.00 0.00 1.85
746 772 4.070552 ACCGCTTCCTCTCGTGCC 62.071 66.667 0.00 0.00 0.00 5.01
748 774 2.811317 GCACCGCTTCCTCTCGTG 60.811 66.667 0.00 0.00 0.00 4.35
749 775 4.070552 GGCACCGCTTCCTCTCGT 62.071 66.667 0.00 0.00 0.00 4.18
750 776 3.764466 AGGCACCGCTTCCTCTCG 61.764 66.667 0.00 0.00 0.00 4.04
751 777 2.125350 CAGGCACCGCTTCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
752 778 3.710722 CCAGGCACCGCTTCCTCT 61.711 66.667 0.00 0.00 0.00 3.69
753 779 4.785453 CCCAGGCACCGCTTCCTC 62.785 72.222 0.00 0.00 0.00 3.71
759 785 3.792736 TATGGACCCAGGCACCGC 61.793 66.667 0.00 0.00 0.00 5.68
760 786 2.189521 GTATGGACCCAGGCACCG 59.810 66.667 0.00 0.00 0.00 4.94
761 787 2.595655 GGTATGGACCCAGGCACC 59.404 66.667 0.00 0.00 40.23 5.01
762 788 2.189521 CGGTATGGACCCAGGCAC 59.810 66.667 0.00 0.00 43.64 5.01
763 789 2.039787 TCGGTATGGACCCAGGCA 59.960 61.111 0.00 0.00 43.64 4.75
764 790 1.760875 TCTCGGTATGGACCCAGGC 60.761 63.158 0.00 0.00 43.64 4.85
765 791 1.735376 CGTCTCGGTATGGACCCAGG 61.735 65.000 0.00 0.00 43.64 4.45
766 792 1.734137 CGTCTCGGTATGGACCCAG 59.266 63.158 0.00 0.00 43.64 4.45
767 793 2.420568 GCGTCTCGGTATGGACCCA 61.421 63.158 0.00 0.00 43.64 4.51
768 794 2.416260 GCGTCTCGGTATGGACCC 59.584 66.667 0.00 0.00 43.64 4.46
769 795 2.025727 CGCGTCTCGGTATGGACC 59.974 66.667 0.00 0.00 43.03 4.46
770 796 1.585521 CACGCGTCTCGGTATGGAC 60.586 63.158 9.86 0.00 43.86 4.02
771 797 2.767445 CCACGCGTCTCGGTATGGA 61.767 63.158 9.86 0.00 43.86 3.41
772 798 2.278596 CCACGCGTCTCGGTATGG 60.279 66.667 9.86 0.00 43.86 2.74
773 799 2.954868 GCCACGCGTCTCGGTATG 60.955 66.667 9.86 0.00 43.86 2.39
785 811 4.873129 CTCCCCACGATCGCCACG 62.873 72.222 16.60 0.94 0.00 4.94
791 817 4.899239 CAGCCGCTCCCCACGATC 62.899 72.222 0.00 0.00 0.00 3.69
794 820 3.976701 AAATCAGCCGCTCCCCACG 62.977 63.158 0.00 0.00 0.00 4.94
795 821 2.044946 AAATCAGCCGCTCCCCAC 60.045 61.111 0.00 0.00 0.00 4.61
796 822 2.045045 CAAATCAGCCGCTCCCCA 60.045 61.111 0.00 0.00 0.00 4.96
797 823 1.657751 GAACAAATCAGCCGCTCCCC 61.658 60.000 0.00 0.00 0.00 4.81
798 824 1.657751 GGAACAAATCAGCCGCTCCC 61.658 60.000 0.00 0.00 0.00 4.30
799 825 1.657751 GGGAACAAATCAGCCGCTCC 61.658 60.000 0.00 0.00 0.00 4.70
800 826 0.960364 TGGGAACAAATCAGCCGCTC 60.960 55.000 0.00 0.00 37.44 5.03
801 827 0.962356 CTGGGAACAAATCAGCCGCT 60.962 55.000 0.00 0.00 42.06 5.52
802 828 0.960364 TCTGGGAACAAATCAGCCGC 60.960 55.000 0.00 0.00 42.06 6.53
803 829 1.533625 TTCTGGGAACAAATCAGCCG 58.466 50.000 0.00 0.00 42.06 5.52
804 830 3.511146 TGATTTCTGGGAACAAATCAGCC 59.489 43.478 3.50 0.00 40.73 4.85
805 831 4.789012 TGATTTCTGGGAACAAATCAGC 57.211 40.909 3.50 0.00 40.73 4.26
807 833 4.455533 CGACTGATTTCTGGGAACAAATCA 59.544 41.667 6.84 6.84 42.41 2.57
808 834 4.142600 CCGACTGATTTCTGGGAACAAATC 60.143 45.833 0.00 0.00 42.06 2.17
809 835 3.758554 CCGACTGATTTCTGGGAACAAAT 59.241 43.478 0.00 0.00 42.06 2.32
810 836 3.146066 CCGACTGATTTCTGGGAACAAA 58.854 45.455 0.00 0.00 42.06 2.83
811 837 2.552155 CCCGACTGATTTCTGGGAACAA 60.552 50.000 0.00 0.00 42.77 2.83
812 838 1.003118 CCCGACTGATTTCTGGGAACA 59.997 52.381 0.00 0.00 42.77 3.18
813 839 1.739067 CCCGACTGATTTCTGGGAAC 58.261 55.000 0.00 0.00 42.77 3.62
814 840 0.035439 GCCCGACTGATTTCTGGGAA 60.035 55.000 0.00 0.00 42.77 3.97
815 841 1.198094 TGCCCGACTGATTTCTGGGA 61.198 55.000 0.00 0.00 42.77 4.37
816 842 0.322456 TTGCCCGACTGATTTCTGGG 60.322 55.000 0.00 0.00 43.02 4.45
817 843 1.755179 ATTGCCCGACTGATTTCTGG 58.245 50.000 0.00 0.00 0.00 3.86
818 844 3.855689 AAATTGCCCGACTGATTTCTG 57.144 42.857 0.00 0.00 0.00 3.02
819 845 5.710099 TCTTTAAATTGCCCGACTGATTTCT 59.290 36.000 0.00 0.00 0.00 2.52
820 846 5.949735 TCTTTAAATTGCCCGACTGATTTC 58.050 37.500 0.00 0.00 0.00 2.17
821 847 5.710099 TCTCTTTAAATTGCCCGACTGATTT 59.290 36.000 0.00 0.00 0.00 2.17
822 848 5.253330 TCTCTTTAAATTGCCCGACTGATT 58.747 37.500 0.00 0.00 0.00 2.57
823 849 4.843728 TCTCTTTAAATTGCCCGACTGAT 58.156 39.130 0.00 0.00 0.00 2.90
824 850 4.280436 TCTCTTTAAATTGCCCGACTGA 57.720 40.909 0.00 0.00 0.00 3.41
825 851 5.567138 AATCTCTTTAAATTGCCCGACTG 57.433 39.130 0.00 0.00 0.00 3.51
826 852 5.125578 GGAAATCTCTTTAAATTGCCCGACT 59.874 40.000 0.00 0.00 0.00 4.18
827 853 5.125578 AGGAAATCTCTTTAAATTGCCCGAC 59.874 40.000 0.00 0.00 31.68 4.79
828 854 5.261216 AGGAAATCTCTTTAAATTGCCCGA 58.739 37.500 0.00 0.00 31.68 5.14
829 855 5.582689 AGGAAATCTCTTTAAATTGCCCG 57.417 39.130 0.00 0.00 31.68 6.13
830 856 6.036470 CGAAGGAAATCTCTTTAAATTGCCC 58.964 40.000 0.00 0.00 31.68 5.36
831 857 6.621613 ACGAAGGAAATCTCTTTAAATTGCC 58.378 36.000 0.00 0.00 31.49 4.52
837 863 9.924650 GGCTATATACGAAGGAAATCTCTTTAA 57.075 33.333 0.00 0.00 0.00 1.52
838 864 9.310449 AGGCTATATACGAAGGAAATCTCTTTA 57.690 33.333 0.00 0.00 0.00 1.85
839 865 8.091449 CAGGCTATATACGAAGGAAATCTCTTT 58.909 37.037 0.00 0.00 0.00 2.52
840 866 7.310113 CCAGGCTATATACGAAGGAAATCTCTT 60.310 40.741 0.00 0.00 0.00 2.85
841 867 6.153680 CCAGGCTATATACGAAGGAAATCTCT 59.846 42.308 0.00 0.00 0.00 3.10
842 868 6.153000 TCCAGGCTATATACGAAGGAAATCTC 59.847 42.308 0.00 0.00 0.00 2.75
843 869 6.017192 TCCAGGCTATATACGAAGGAAATCT 58.983 40.000 0.00 0.00 0.00 2.40
844 870 6.071278 AGTCCAGGCTATATACGAAGGAAATC 60.071 42.308 0.00 0.00 0.00 2.17
845 871 5.780793 AGTCCAGGCTATATACGAAGGAAAT 59.219 40.000 0.00 0.00 0.00 2.17
846 872 5.145564 AGTCCAGGCTATATACGAAGGAAA 58.854 41.667 0.00 0.00 0.00 3.13
847 873 4.737578 AGTCCAGGCTATATACGAAGGAA 58.262 43.478 0.00 0.00 0.00 3.36
848 874 4.333690 GAGTCCAGGCTATATACGAAGGA 58.666 47.826 0.00 0.00 0.00 3.36
871 897 4.561735 TTTTTCCGGTAGCTTTTCTGTG 57.438 40.909 0.00 0.00 0.00 3.66
900 926 0.454620 CGTTCCGGATCCGATCGATC 60.455 60.000 35.42 19.91 45.91 3.69
925 951 9.780413 GTTCCAATTTATGAAAGATCTCTCAAC 57.220 33.333 2.15 0.00 0.00 3.18
926 952 8.668353 CGTTCCAATTTATGAAAGATCTCTCAA 58.332 33.333 2.15 0.00 0.00 3.02
928 954 7.495934 TCCGTTCCAATTTATGAAAGATCTCTC 59.504 37.037 0.00 0.00 0.00 3.20
929 955 7.281100 GTCCGTTCCAATTTATGAAAGATCTCT 59.719 37.037 0.00 0.00 0.00 3.10
930 956 7.281100 AGTCCGTTCCAATTTATGAAAGATCTC 59.719 37.037 0.00 0.00 0.00 2.75
931 957 7.112779 AGTCCGTTCCAATTTATGAAAGATCT 58.887 34.615 0.00 0.00 0.00 2.75
932 958 7.321745 AGTCCGTTCCAATTTATGAAAGATC 57.678 36.000 0.00 0.00 0.00 2.75
933 959 6.037172 CGAGTCCGTTCCAATTTATGAAAGAT 59.963 38.462 0.00 0.00 0.00 2.40
934 960 5.350365 CGAGTCCGTTCCAATTTATGAAAGA 59.650 40.000 0.00 0.00 0.00 2.52
935 961 5.560148 CGAGTCCGTTCCAATTTATGAAAG 58.440 41.667 0.00 0.00 0.00 2.62
936 962 5.539582 CGAGTCCGTTCCAATTTATGAAA 57.460 39.130 0.00 0.00 0.00 2.69
963 989 4.767928 ACGTCCTCTTTACACAGAGATCTT 59.232 41.667 0.00 0.00 42.81 2.40
974 1006 3.778618 GTGGGATACACGTCCTCTTTAC 58.221 50.000 0.00 0.00 40.85 2.01
1309 1594 1.079750 GGTTCGTCAGGGAGCACTC 60.080 63.158 0.00 0.00 0.00 3.51
1322 1607 1.078918 GTTACCGGGGAAGGGTTCG 60.079 63.158 6.32 0.00 38.99 3.95
1394 1679 4.250464 GTGATCGGACATTAACACCTTCA 58.750 43.478 0.00 0.00 0.00 3.02
1553 2310 5.106791 CCTTTGAAGAGCGCAATATCTATGG 60.107 44.000 11.47 7.24 0.00 2.74
1586 2343 2.179517 CTGTGTCGAGGAGGACGC 59.820 66.667 0.00 0.00 45.35 5.19
1609 2366 0.673956 TCCTCGTCTCCTGTGTCGAG 60.674 60.000 6.47 6.47 45.89 4.04
1619 2376 1.807742 CATATCCCTCGTCCTCGTCTC 59.192 57.143 0.00 0.00 38.33 3.36
1629 2386 1.001268 CTCACGTGTCCATATCCCTCG 60.001 57.143 16.51 0.00 0.00 4.63
1630 2387 1.269831 GCTCACGTGTCCATATCCCTC 60.270 57.143 16.51 0.00 0.00 4.30
1631 2388 0.753262 GCTCACGTGTCCATATCCCT 59.247 55.000 16.51 0.00 0.00 4.20
1632 2389 0.753262 AGCTCACGTGTCCATATCCC 59.247 55.000 16.51 0.00 0.00 3.85
1633 2390 2.474816 GAAGCTCACGTGTCCATATCC 58.525 52.381 16.51 0.00 0.00 2.59
1634 2391 2.120232 CGAAGCTCACGTGTCCATATC 58.880 52.381 16.51 7.04 0.00 1.63
1644 2401 0.664466 TTGTCTGCTCGAAGCTCACG 60.664 55.000 6.89 6.89 42.97 4.35
1647 2404 0.319900 TGGTTGTCTGCTCGAAGCTC 60.320 55.000 8.07 1.42 42.97 4.09
1648 2405 0.322975 ATGGTTGTCTGCTCGAAGCT 59.677 50.000 8.07 0.00 42.97 3.74
1649 2406 0.723981 GATGGTTGTCTGCTCGAAGC 59.276 55.000 0.00 0.00 42.82 3.86
1650 2407 1.338105 TGGATGGTTGTCTGCTCGAAG 60.338 52.381 0.00 0.00 0.00 3.79
1651 2408 0.684535 TGGATGGTTGTCTGCTCGAA 59.315 50.000 0.00 0.00 0.00 3.71
1652 2409 0.247460 CTGGATGGTTGTCTGCTCGA 59.753 55.000 0.00 0.00 0.00 4.04
1653 2410 0.742281 CCTGGATGGTTGTCTGCTCG 60.742 60.000 0.00 0.00 0.00 5.03
1654 2411 0.393537 CCCTGGATGGTTGTCTGCTC 60.394 60.000 0.00 0.00 0.00 4.26
1655 2412 0.842030 TCCCTGGATGGTTGTCTGCT 60.842 55.000 0.00 0.00 0.00 4.24
1656 2413 0.678048 GTCCCTGGATGGTTGTCTGC 60.678 60.000 0.00 0.00 0.00 4.26
1657 2414 0.391661 CGTCCCTGGATGGTTGTCTG 60.392 60.000 0.00 0.00 0.00 3.51
1658 2415 1.983224 CGTCCCTGGATGGTTGTCT 59.017 57.895 0.00 0.00 0.00 3.41
1659 2416 1.745489 GCGTCCCTGGATGGTTGTC 60.745 63.158 7.48 0.00 0.00 3.18
1660 2417 1.852157 ATGCGTCCCTGGATGGTTGT 61.852 55.000 7.48 0.00 0.00 3.32
1661 2418 1.077501 ATGCGTCCCTGGATGGTTG 60.078 57.895 7.48 0.00 0.00 3.77
1662 2419 1.077501 CATGCGTCCCTGGATGGTT 60.078 57.895 7.48 0.00 34.42 3.67
1663 2420 1.976132 CTCATGCGTCCCTGGATGGT 61.976 60.000 7.48 0.00 38.14 3.55
1664 2421 1.227764 CTCATGCGTCCCTGGATGG 60.228 63.158 7.48 0.00 38.14 3.51
1665 2422 1.890979 GCTCATGCGTCCCTGGATG 60.891 63.158 0.00 0.80 38.86 3.51
1666 2423 1.630126 AAGCTCATGCGTCCCTGGAT 61.630 55.000 0.00 0.00 45.42 3.41
1667 2424 2.244117 GAAGCTCATGCGTCCCTGGA 62.244 60.000 0.00 0.00 45.42 3.86
1668 2425 1.817099 GAAGCTCATGCGTCCCTGG 60.817 63.158 0.00 0.00 45.42 4.45
1669 2426 2.169789 CGAAGCTCATGCGTCCCTG 61.170 63.158 0.00 0.00 43.15 4.45
1670 2427 2.185350 CGAAGCTCATGCGTCCCT 59.815 61.111 0.00 0.00 43.15 4.20
1671 2428 2.125512 ACGAAGCTCATGCGTCCC 60.126 61.111 0.00 0.00 43.15 4.46
1672 2429 1.687494 GACACGAAGCTCATGCGTCC 61.687 60.000 0.00 0.00 43.15 4.79
1673 2430 1.687494 GGACACGAAGCTCATGCGTC 61.687 60.000 0.00 0.00 45.42 5.19
1674 2431 1.738099 GGACACGAAGCTCATGCGT 60.738 57.895 0.00 0.00 45.42 5.24
1675 2432 1.446792 AGGACACGAAGCTCATGCG 60.447 57.895 0.00 0.00 45.42 4.73
1754 2517 4.505922 GCGTCAGTCTCATAAGGATCAAAG 59.494 45.833 0.00 0.00 0.00 2.77
1766 2529 2.683859 CCCGTACGCGTCAGTCTCA 61.684 63.158 18.63 0.00 36.15 3.27
1862 2625 4.573210 TCGATCCCCGAGTCGATT 57.427 55.556 15.64 0.00 43.23 3.34
1934 2703 1.153628 GACCTCGGTCCATTGTCCG 60.154 63.158 4.73 10.08 46.93 4.79
1964 2733 4.626081 ACAAAGAGCGCGCACCCT 62.626 61.111 35.10 23.18 0.00 4.34
1968 2737 3.716006 GCTGACAAAGAGCGCGCA 61.716 61.111 35.10 8.82 0.00 6.09
2072 2925 3.754965 TGGAAAGGGATTCTCACAAGTG 58.245 45.455 0.00 0.00 38.18 3.16
2226 3082 6.407865 GGAAATCTTAACTGGTAGTACCTCCC 60.408 46.154 20.07 0.00 39.58 4.30
2227 3083 6.383436 AGGAAATCTTAACTGGTAGTACCTCC 59.617 42.308 20.07 13.50 39.58 4.30
2229 3085 7.809880 AAGGAAATCTTAACTGGTAGTACCT 57.190 36.000 20.07 2.88 34.78 3.08
2285 3145 9.561069 GTGTCTAATGGGTATTGTGAATAAGAT 57.439 33.333 0.00 0.00 0.00 2.40
2290 3151 7.633789 AGAAGTGTCTAATGGGTATTGTGAAT 58.366 34.615 0.00 0.00 29.93 2.57
2321 3182 7.611467 AGATTATCTCTTCAGTCTCGAGCATAT 59.389 37.037 7.81 0.00 0.00 1.78
2338 3220 6.226787 CCCATACCACACAGAAGATTATCTC 58.773 44.000 0.00 0.00 0.00 2.75
2340 3222 5.071788 TCCCCATACCACACAGAAGATTATC 59.928 44.000 0.00 0.00 0.00 1.75
2527 3684 4.080863 AGGGGAGACTGTTTGTTGCTATAG 60.081 45.833 0.00 0.00 0.00 1.31
2536 3693 4.223032 ACATGTAGTAGGGGAGACTGTTTG 59.777 45.833 0.00 0.00 0.00 2.93
2579 3740 9.860898 ATCATTTGATAGCTTTGAACCTTTTAC 57.139 29.630 0.00 0.00 32.01 2.01
2631 3792 8.583296 GGAGTTCCGTACATTAGGTTTCTATAT 58.417 37.037 0.00 0.00 0.00 0.86
2632 3793 7.560991 TGGAGTTCCGTACATTAGGTTTCTATA 59.439 37.037 0.00 0.00 39.43 1.31
2647 3812 7.369551 ACCAATAAATATCTGGAGTTCCGTA 57.630 36.000 0.00 0.00 39.43 4.02
2752 4195 5.232838 GCAATTAACCAGCTATGCAAACATC 59.767 40.000 0.00 0.00 37.74 3.06
2818 4262 4.065321 ACTGGTTCTGACTTCTGTCTTG 57.935 45.455 0.00 0.00 43.29 3.02
2819 4263 4.162320 TCAACTGGTTCTGACTTCTGTCTT 59.838 41.667 0.00 0.00 43.29 3.01
3164 4648 3.315191 ACAGTGTTTGGTAATGAGCACAC 59.685 43.478 0.00 0.00 34.92 3.82
3184 4670 1.985473 ATTGCTTGTTGCTCTGGACA 58.015 45.000 0.00 0.00 43.37 4.02
3186 4672 3.888323 TGTTAATTGCTTGTTGCTCTGGA 59.112 39.130 0.00 0.00 43.37 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.