Multiple sequence alignment - TraesCS7A01G185800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G185800 chr7A 100.000 4310 0 0 1 4310 139787513 139791822 0.000000e+00 7960.0
1 TraesCS7A01G185800 chr7A 87.337 1998 176 31 747 2698 139744311 139746277 0.000000e+00 2217.0
2 TraesCS7A01G185800 chr7A 86.224 1989 169 53 687 2636 139611070 139612992 0.000000e+00 2058.0
3 TraesCS7A01G185800 chr7A 84.058 1656 170 51 1021 2657 49404451 49402871 0.000000e+00 1509.0
4 TraesCS7A01G185800 chr7A 83.431 513 48 14 3658 4138 610272828 610273335 3.960000e-120 442.0
5 TraesCS7A01G185800 chr7A 85.870 276 35 4 3397 3672 610271163 610271434 1.520000e-74 291.0
6 TraesCS7A01G185800 chr7A 81.938 227 28 5 3178 3395 139667270 139667492 3.420000e-41 180.0
7 TraesCS7A01G185800 chr7A 97.647 85 1 1 4 88 139743989 139744072 1.250000e-30 145.0
8 TraesCS7A01G185800 chr7A 93.182 88 2 2 1 88 139666548 139666631 4.520000e-25 126.0
9 TraesCS7A01G185800 chr7A 93.827 81 5 0 751 831 49894641 49894721 5.850000e-24 122.0
10 TraesCS7A01G185800 chr7A 91.566 83 7 0 748 830 49404663 49404581 9.790000e-22 115.0
11 TraesCS7A01G185800 chr7A 93.243 74 4 1 590 662 139744206 139744279 1.640000e-19 108.0
12 TraesCS7A01G185800 chr7A 92.308 52 4 0 597 648 49405112 49405061 1.660000e-09 75.0
13 TraesCS7A01G185800 chr7D 92.609 2422 95 35 687 3065 139939573 139941953 0.000000e+00 3404.0
14 TraesCS7A01G185800 chr7D 91.706 1688 118 8 937 2608 139887648 139889329 0.000000e+00 2322.0
15 TraesCS7A01G185800 chr7D 90.517 1624 114 23 937 2551 139865101 139866693 0.000000e+00 2109.0
16 TraesCS7A01G185800 chr7D 87.071 758 86 9 3396 4143 508831092 508830337 0.000000e+00 846.0
17 TraesCS7A01G185800 chr7D 84.218 754 97 15 3396 4143 78887423 78886686 0.000000e+00 713.0
18 TraesCS7A01G185800 chr7D 94.498 309 8 3 3095 3395 139942083 139942390 6.530000e-128 468.0
19 TraesCS7A01G185800 chr7D 84.527 349 42 7 88 428 24930064 24930408 6.910000e-88 335.0
20 TraesCS7A01G185800 chr7D 81.105 344 38 17 2970 3299 139934838 139935168 2.570000e-62 250.0
21 TraesCS7A01G185800 chr7D 87.273 165 16 4 4148 4310 508830271 508830110 2.650000e-42 183.0
22 TraesCS7A01G185800 chr7D 95.370 108 5 0 559 666 139939477 139939584 5.730000e-39 172.0
23 TraesCS7A01G185800 chr7D 90.678 118 4 1 714 831 139864828 139864938 2.680000e-32 150.0
24 TraesCS7A01G185800 chr7D 96.591 88 3 0 1 88 139939390 139939477 3.470000e-31 147.0
25 TraesCS7A01G185800 chr7D 88.785 107 5 1 714 820 139887167 139887266 1.630000e-24 124.0
26 TraesCS7A01G185800 chr7D 90.541 74 5 2 590 662 139887086 139887158 3.550000e-16 97.1
27 TraesCS7A01G185800 chr7D 91.935 62 2 1 1 59 139863521 139863582 2.760000e-12 84.2
28 TraesCS7A01G185800 chr7D 100.000 44 0 0 3055 3098 139941959 139942002 9.930000e-12 82.4
29 TraesCS7A01G185800 chr7D 88.525 61 5 1 687 745 139863958 139864018 5.980000e-09 73.1
30 TraesCS7A01G185800 chr7B 91.030 2174 101 37 687 2797 105009466 105011608 0.000000e+00 2848.0
31 TraesCS7A01G185800 chr7B 87.244 2054 179 41 687 2698 105001420 105003432 0.000000e+00 2265.0
32 TraesCS7A01G185800 chr7B 88.827 1790 131 20 937 2698 104955899 104957647 0.000000e+00 2134.0
33 TraesCS7A01G185800 chr7B 90.000 400 19 6 2906 3290 105012679 105013072 8.320000e-137 497.0
34 TraesCS7A01G185800 chr7B 91.102 236 20 1 3909 4143 584758689 584758454 6.960000e-83 318.0
35 TraesCS7A01G185800 chr7B 91.071 168 8 6 4148 4310 584758395 584758230 2.020000e-53 220.0
36 TraesCS7A01G185800 chr7B 78.055 401 26 30 714 1087 105000441 105000806 3.400000e-46 196.0
37 TraesCS7A01G185800 chr7B 81.466 232 26 13 2977 3199 104957659 104957882 1.590000e-39 174.0
38 TraesCS7A01G185800 chr7B 90.756 119 8 2 444 560 61612775 61612658 5.770000e-34 156.0
39 TraesCS7A01G185800 chr7B 90.435 115 9 2 559 672 105009371 105009484 2.680000e-32 150.0
40 TraesCS7A01G185800 chr7B 96.591 88 1 2 1 88 105000143 105000228 1.250000e-30 145.0
41 TraesCS7A01G185800 chr7B 95.294 85 4 0 747 831 104955657 104955741 7.520000e-28 135.0
42 TraesCS7A01G185800 chr7B 94.318 88 5 0 1 88 105009284 105009371 7.520000e-28 135.0
43 TraesCS7A01G185800 chr7B 89.189 74 7 1 590 662 105000359 105000432 1.650000e-14 91.6
44 TraesCS7A01G185800 chr4A 83.949 1950 206 43 749 2663 662136622 662138499 0.000000e+00 1768.0
45 TraesCS7A01G185800 chr4A 83.805 1908 207 44 747 2624 662143083 662144918 0.000000e+00 1718.0
46 TraesCS7A01G185800 chr4A 89.744 117 12 0 444 560 629300007 629299891 2.680000e-32 150.0
47 TraesCS7A01G185800 chr4A 89.130 92 8 2 4056 4146 120562827 120562737 3.520000e-21 113.0
48 TraesCS7A01G185800 chr4A 76.106 226 32 15 2706 2922 667191818 667191606 9.860000e-17 99.0
49 TraesCS7A01G185800 chr4A 89.231 65 6 1 590 654 662136257 662136320 3.570000e-11 80.5
50 TraesCS7A01G185800 chr2A 85.540 1314 155 21 1275 2576 778252421 778253711 0.000000e+00 1341.0
51 TraesCS7A01G185800 chr2A 91.667 84 7 0 747 830 778251937 778252020 2.720000e-22 117.0
52 TraesCS7A01G185800 chr2D 82.892 1134 115 37 1021 2146 634917620 634916558 0.000000e+00 946.0
53 TraesCS7A01G185800 chr2D 84.778 519 68 6 3397 3910 523639704 523639192 1.070000e-140 510.0
54 TraesCS7A01G185800 chr2D 89.916 119 8 4 444 560 20687369 20687253 2.680000e-32 150.0
55 TraesCS7A01G185800 chr2D 89.831 118 10 2 444 560 81638946 81638830 2.680000e-32 150.0
56 TraesCS7A01G185800 chr2D 90.476 84 8 0 747 830 634917878 634917795 1.270000e-20 111.0
57 TraesCS7A01G185800 chr2D 91.549 71 6 0 599 669 634918080 634918010 9.860000e-17 99.0
58 TraesCS7A01G185800 chr3B 86.719 768 81 9 3397 4143 684261226 684260459 0.000000e+00 833.0
59 TraesCS7A01G185800 chr3B 91.018 167 11 3 4148 4310 684260393 684260227 5.610000e-54 222.0
60 TraesCS7A01G185800 chr1B 89.134 681 59 10 3470 4143 619387555 619386883 0.000000e+00 833.0
61 TraesCS7A01G185800 chr1B 86.111 360 37 11 88 443 533813362 533813012 4.070000e-100 375.0
62 TraesCS7A01G185800 chr3A 86.494 770 73 19 3396 4143 427202779 427202019 0.000000e+00 817.0
63 TraesCS7A01G185800 chr3A 80.876 753 101 22 3395 4143 640445053 640444340 1.750000e-153 553.0
64 TraesCS7A01G185800 chr3A 80.233 258 43 7 3390 3643 469871615 469871868 2.050000e-43 187.0
65 TraesCS7A01G185800 chr6B 91.489 517 35 7 3798 4310 126751099 126750588 0.000000e+00 702.0
66 TraesCS7A01G185800 chr6B 82.520 492 44 21 92 560 156479076 156478604 1.120000e-105 394.0
67 TraesCS7A01G185800 chrUn 84.657 554 72 7 3397 3946 102524949 102524405 1.360000e-149 540.0
68 TraesCS7A01G185800 chrUn 81.250 112 20 1 3989 4099 102524410 102524299 5.940000e-14 89.8
69 TraesCS7A01G185800 chr5D 85.950 363 43 6 87 443 67871726 67871366 8.750000e-102 381.0
70 TraesCS7A01G185800 chr5D 80.591 474 58 20 88 538 482604525 482604987 6.910000e-88 335.0
71 TraesCS7A01G185800 chr3D 86.494 348 35 10 88 430 119656066 119655726 5.260000e-99 372.0
72 TraesCS7A01G185800 chr3D 85.714 364 37 11 88 443 151904072 151903716 1.890000e-98 370.0
73 TraesCS7A01G185800 chr3D 84.890 364 43 9 87 443 72042478 72042120 1.470000e-94 357.0
74 TraesCS7A01G185800 chr3D 89.831 118 11 1 444 560 119655821 119655704 2.680000e-32 150.0
75 TraesCS7A01G185800 chr3D 83.000 100 9 7 3111 3207 439096792 439096698 2.760000e-12 84.2
76 TraesCS7A01G185800 chr4B 84.807 362 43 9 88 443 6012141 6012496 1.910000e-93 353.0
77 TraesCS7A01G185800 chr6A 84.594 357 40 8 88 443 575324549 575324207 1.480000e-89 340.0
78 TraesCS7A01G185800 chr6A 79.524 420 65 18 150 561 153386873 153387279 3.280000e-71 279.0
79 TraesCS7A01G185800 chr6A 89.167 120 12 1 441 560 596519876 596519994 9.660000e-32 148.0
80 TraesCS7A01G185800 chr4D 87.903 124 15 0 440 563 351453777 351453654 3.470000e-31 147.0
81 TraesCS7A01G185800 chr4D 87.838 74 9 0 4070 4143 25434506 25434579 2.140000e-13 87.9
82 TraesCS7A01G185800 chr5A 80.667 150 26 2 3998 4146 180341752 180341605 3.520000e-21 113.0
83 TraesCS7A01G185800 chr2B 98.462 65 0 1 641 704 707963234 707963298 3.520000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G185800 chr7A 139787513 139791822 4309 False 7960.000000 7960 100.000000 1 4310 1 chr7A.!!$F3 4309
1 TraesCS7A01G185800 chr7A 139611070 139612992 1922 False 2058.000000 2058 86.224000 687 2636 1 chr7A.!!$F2 1949
2 TraesCS7A01G185800 chr7A 139743989 139746277 2288 False 823.333333 2217 92.742333 4 2698 3 chr7A.!!$F5 2694
3 TraesCS7A01G185800 chr7A 49402871 49405112 2241 True 566.333333 1509 89.310667 597 2657 3 chr7A.!!$R1 2060
4 TraesCS7A01G185800 chr7A 610271163 610273335 2172 False 366.500000 442 84.650500 3397 4138 2 chr7A.!!$F6 741
5 TraesCS7A01G185800 chr7D 139939390 139942390 3000 False 854.680000 3404 95.813600 1 3395 5 chr7D.!!$F5 3394
6 TraesCS7A01G185800 chr7D 139887086 139889329 2243 False 847.700000 2322 90.344000 590 2608 3 chr7D.!!$F4 2018
7 TraesCS7A01G185800 chr7D 78886686 78887423 737 True 713.000000 713 84.218000 3396 4143 1 chr7D.!!$R1 747
8 TraesCS7A01G185800 chr7D 139863521 139866693 3172 False 604.075000 2109 90.413750 1 2551 4 chr7D.!!$F3 2550
9 TraesCS7A01G185800 chr7D 508830110 508831092 982 True 514.500000 846 87.172000 3396 4310 2 chr7D.!!$R2 914
10 TraesCS7A01G185800 chr7B 105009284 105013072 3788 False 907.500000 2848 91.445750 1 3290 4 chr7B.!!$F3 3289
11 TraesCS7A01G185800 chr7B 104955657 104957882 2225 False 814.333333 2134 88.529000 747 3199 3 chr7B.!!$F1 2452
12 TraesCS7A01G185800 chr7B 105000143 105003432 3289 False 674.400000 2265 87.769750 1 2698 4 chr7B.!!$F2 2697
13 TraesCS7A01G185800 chr4A 662143083 662144918 1835 False 1718.000000 1718 83.805000 747 2624 1 chr4A.!!$F1 1877
14 TraesCS7A01G185800 chr4A 662136257 662138499 2242 False 924.250000 1768 86.590000 590 2663 2 chr4A.!!$F2 2073
15 TraesCS7A01G185800 chr2A 778251937 778253711 1774 False 729.000000 1341 88.603500 747 2576 2 chr2A.!!$F1 1829
16 TraesCS7A01G185800 chr2D 523639192 523639704 512 True 510.000000 510 84.778000 3397 3910 1 chr2D.!!$R3 513
17 TraesCS7A01G185800 chr2D 634916558 634918080 1522 True 385.333333 946 88.305667 599 2146 3 chr2D.!!$R4 1547
18 TraesCS7A01G185800 chr3B 684260227 684261226 999 True 527.500000 833 88.868500 3397 4310 2 chr3B.!!$R1 913
19 TraesCS7A01G185800 chr1B 619386883 619387555 672 True 833.000000 833 89.134000 3470 4143 1 chr1B.!!$R2 673
20 TraesCS7A01G185800 chr3A 427202019 427202779 760 True 817.000000 817 86.494000 3396 4143 1 chr3A.!!$R1 747
21 TraesCS7A01G185800 chr3A 640444340 640445053 713 True 553.000000 553 80.876000 3395 4143 1 chr3A.!!$R2 748
22 TraesCS7A01G185800 chr6B 126750588 126751099 511 True 702.000000 702 91.489000 3798 4310 1 chr6B.!!$R1 512
23 TraesCS7A01G185800 chrUn 102524299 102524949 650 True 314.900000 540 82.953500 3397 4099 2 chrUn.!!$R1 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
436 440 0.035152 TGGCTGCCCTTCACATGTAG 60.035 55.0 17.53 0.00 0.00 2.74 F
1007 3022 0.184211 ACTGGGTTAAACAAGCCCGT 59.816 50.0 0.00 0.54 45.19 5.28 F
1728 4854 0.250901 CTCCAGTCCAACCACTTGGG 60.251 60.0 0.00 0.00 46.50 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1450 4545 0.032813 CCTTGCCCTCCATGATGGTT 60.033 55.000 11.87 0.00 39.03 3.67 R
2620 5773 2.030562 CACGGGTCACCCACTGTC 59.969 66.667 15.17 0.00 45.83 3.51 R
3492 7762 1.136305 AGGGACCGTATTGATCACGTG 59.864 52.381 9.94 9.94 37.71 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 6.402456 AGAAGACGGTATATTTCCTACCAC 57.598 41.667 0.00 0.00 38.88 4.16
89 93 6.134754 AGAAGACGGTATATTTCCTACCACT 58.865 40.000 0.00 0.00 38.88 4.00
90 94 7.293073 AGAAGACGGTATATTTCCTACCACTA 58.707 38.462 0.00 0.00 38.88 2.74
91 95 7.447853 AGAAGACGGTATATTTCCTACCACTAG 59.552 40.741 0.00 0.00 38.88 2.57
92 96 6.608922 AGACGGTATATTTCCTACCACTAGT 58.391 40.000 0.00 0.00 38.88 2.57
93 97 6.489361 AGACGGTATATTTCCTACCACTAGTG 59.511 42.308 16.34 16.34 38.88 2.74
102 106 3.166434 CCACTAGTGGTTGGGGCA 58.834 61.111 30.57 0.00 45.53 5.36
103 107 1.303317 CCACTAGTGGTTGGGGCAC 60.303 63.158 30.57 0.00 45.53 5.01
120 124 2.124570 CCACCTTATGGCGCTGCT 60.125 61.111 7.64 0.00 43.24 4.24
121 125 1.750399 CCACCTTATGGCGCTGCTT 60.750 57.895 7.64 0.00 43.24 3.91
122 126 1.430632 CACCTTATGGCGCTGCTTG 59.569 57.895 7.64 0.00 36.63 4.01
123 127 1.026182 CACCTTATGGCGCTGCTTGA 61.026 55.000 7.64 0.00 36.63 3.02
124 128 0.745845 ACCTTATGGCGCTGCTTGAG 60.746 55.000 7.64 0.00 36.63 3.02
125 129 0.462581 CCTTATGGCGCTGCTTGAGA 60.463 55.000 7.64 0.00 0.00 3.27
126 130 0.935898 CTTATGGCGCTGCTTGAGAG 59.064 55.000 7.64 0.00 0.00 3.20
127 131 0.250234 TTATGGCGCTGCTTGAGAGT 59.750 50.000 7.64 0.00 0.00 3.24
128 132 1.111277 TATGGCGCTGCTTGAGAGTA 58.889 50.000 7.64 0.00 0.00 2.59
129 133 0.250234 ATGGCGCTGCTTGAGAGTAA 59.750 50.000 7.64 0.00 0.00 2.24
130 134 0.390340 TGGCGCTGCTTGAGAGTAAG 60.390 55.000 7.64 0.00 0.00 2.34
131 135 0.390472 GGCGCTGCTTGAGAGTAAGT 60.390 55.000 7.64 0.00 0.00 2.24
132 136 1.433534 GCGCTGCTTGAGAGTAAGTT 58.566 50.000 0.00 0.00 0.00 2.66
133 137 1.127582 GCGCTGCTTGAGAGTAAGTTG 59.872 52.381 0.00 0.00 0.00 3.16
134 138 2.408050 CGCTGCTTGAGAGTAAGTTGT 58.592 47.619 0.00 0.00 0.00 3.32
135 139 2.156504 CGCTGCTTGAGAGTAAGTTGTG 59.843 50.000 0.00 0.00 0.00 3.33
136 140 2.096019 GCTGCTTGAGAGTAAGTTGTGC 60.096 50.000 0.00 0.00 0.00 4.57
137 141 2.135139 TGCTTGAGAGTAAGTTGTGCG 58.865 47.619 0.00 0.00 0.00 5.34
138 142 1.136224 GCTTGAGAGTAAGTTGTGCGC 60.136 52.381 0.00 0.00 0.00 6.09
139 143 2.135139 CTTGAGAGTAAGTTGTGCGCA 58.865 47.619 5.66 5.66 0.00 6.09
140 144 2.455674 TGAGAGTAAGTTGTGCGCAT 57.544 45.000 15.91 0.00 0.00 4.73
141 145 3.586100 TGAGAGTAAGTTGTGCGCATA 57.414 42.857 15.91 8.59 0.00 3.14
142 146 4.123497 TGAGAGTAAGTTGTGCGCATAT 57.877 40.909 15.91 0.00 0.00 1.78
143 147 4.503910 TGAGAGTAAGTTGTGCGCATATT 58.496 39.130 15.91 5.71 0.00 1.28
144 148 4.935205 TGAGAGTAAGTTGTGCGCATATTT 59.065 37.500 15.91 11.37 0.00 1.40
145 149 5.063438 TGAGAGTAAGTTGTGCGCATATTTC 59.937 40.000 15.91 0.00 0.00 2.17
146 150 5.178797 AGAGTAAGTTGTGCGCATATTTCT 58.821 37.500 15.91 6.34 0.00 2.52
147 151 6.338146 AGAGTAAGTTGTGCGCATATTTCTA 58.662 36.000 15.91 0.00 0.00 2.10
148 152 6.986817 AGAGTAAGTTGTGCGCATATTTCTAT 59.013 34.615 15.91 0.66 0.00 1.98
149 153 7.495934 AGAGTAAGTTGTGCGCATATTTCTATT 59.504 33.333 15.91 3.70 0.00 1.73
150 154 7.985476 AGTAAGTTGTGCGCATATTTCTATTT 58.015 30.769 15.91 0.70 0.00 1.40
151 155 8.458843 AGTAAGTTGTGCGCATATTTCTATTTT 58.541 29.630 15.91 0.49 0.00 1.82
152 156 9.710979 GTAAGTTGTGCGCATATTTCTATTTTA 57.289 29.630 15.91 0.00 0.00 1.52
154 158 9.632807 AAGTTGTGCGCATATTTCTATTTTAAA 57.367 25.926 15.91 0.00 0.00 1.52
155 159 9.632807 AGTTGTGCGCATATTTCTATTTTAAAA 57.367 25.926 15.91 2.51 0.00 1.52
177 181 7.898014 AAAAATACATAGAATCCCCACCTTC 57.102 36.000 0.00 0.00 0.00 3.46
178 182 4.891992 ATACATAGAATCCCCACCTTCG 57.108 45.455 0.00 0.00 0.00 3.79
179 183 2.478292 ACATAGAATCCCCACCTTCGT 58.522 47.619 0.00 0.00 0.00 3.85
180 184 2.434702 ACATAGAATCCCCACCTTCGTC 59.565 50.000 0.00 0.00 0.00 4.20
181 185 2.544844 TAGAATCCCCACCTTCGTCT 57.455 50.000 0.00 0.00 0.00 4.18
182 186 2.544844 AGAATCCCCACCTTCGTCTA 57.455 50.000 0.00 0.00 0.00 2.59
183 187 2.829023 AGAATCCCCACCTTCGTCTAA 58.171 47.619 0.00 0.00 0.00 2.10
184 188 3.178865 AGAATCCCCACCTTCGTCTAAA 58.821 45.455 0.00 0.00 0.00 1.85
185 189 3.585732 AGAATCCCCACCTTCGTCTAAAA 59.414 43.478 0.00 0.00 0.00 1.52
186 190 3.629142 ATCCCCACCTTCGTCTAAAAG 57.371 47.619 0.00 0.00 0.00 2.27
187 191 2.612000 TCCCCACCTTCGTCTAAAAGA 58.388 47.619 0.00 0.00 0.00 2.52
188 192 2.974099 TCCCCACCTTCGTCTAAAAGAA 59.026 45.455 0.00 0.00 0.00 2.52
189 193 3.072211 CCCCACCTTCGTCTAAAAGAAC 58.928 50.000 0.00 0.00 0.00 3.01
190 194 3.495453 CCCCACCTTCGTCTAAAAGAACA 60.495 47.826 0.00 0.00 0.00 3.18
191 195 4.324267 CCCACCTTCGTCTAAAAGAACAT 58.676 43.478 0.00 0.00 0.00 2.71
192 196 4.392138 CCCACCTTCGTCTAAAAGAACATC 59.608 45.833 0.00 0.00 0.00 3.06
193 197 5.238583 CCACCTTCGTCTAAAAGAACATCT 58.761 41.667 0.00 0.00 0.00 2.90
194 198 5.348997 CCACCTTCGTCTAAAAGAACATCTC 59.651 44.000 0.00 0.00 0.00 2.75
195 199 5.926542 CACCTTCGTCTAAAAGAACATCTCA 59.073 40.000 0.00 0.00 0.00 3.27
196 200 6.090088 CACCTTCGTCTAAAAGAACATCTCAG 59.910 42.308 0.00 0.00 0.00 3.35
197 201 6.015350 ACCTTCGTCTAAAAGAACATCTCAGA 60.015 38.462 0.00 0.00 0.00 3.27
198 202 6.868864 CCTTCGTCTAAAAGAACATCTCAGAA 59.131 38.462 0.00 0.00 0.00 3.02
199 203 7.385205 CCTTCGTCTAAAAGAACATCTCAGAAA 59.615 37.037 0.00 0.00 0.00 2.52
200 204 8.657074 TTCGTCTAAAAGAACATCTCAGAAAA 57.343 30.769 0.00 0.00 0.00 2.29
201 205 8.657074 TCGTCTAAAAGAACATCTCAGAAAAA 57.343 30.769 0.00 0.00 0.00 1.94
246 250 6.772770 AATGTAAAACAAAATTACCACCGC 57.227 33.333 0.00 0.00 33.32 5.68
247 251 5.258456 TGTAAAACAAAATTACCACCGCA 57.742 34.783 0.00 0.00 33.32 5.69
248 252 5.282510 TGTAAAACAAAATTACCACCGCAG 58.717 37.500 0.00 0.00 33.32 5.18
249 253 2.432206 AACAAAATTACCACCGCAGC 57.568 45.000 0.00 0.00 0.00 5.25
250 254 0.601057 ACAAAATTACCACCGCAGCC 59.399 50.000 0.00 0.00 0.00 4.85
251 255 0.887933 CAAAATTACCACCGCAGCCT 59.112 50.000 0.00 0.00 0.00 4.58
252 256 2.088423 CAAAATTACCACCGCAGCCTA 58.912 47.619 0.00 0.00 0.00 3.93
253 257 1.746470 AAATTACCACCGCAGCCTAC 58.254 50.000 0.00 0.00 0.00 3.18
254 258 0.107361 AATTACCACCGCAGCCTACC 60.107 55.000 0.00 0.00 0.00 3.18
255 259 1.268992 ATTACCACCGCAGCCTACCA 61.269 55.000 0.00 0.00 0.00 3.25
256 260 1.895020 TTACCACCGCAGCCTACCAG 61.895 60.000 0.00 0.00 0.00 4.00
262 266 2.510238 GCAGCCTACCAGCGAGTG 60.510 66.667 0.00 0.00 38.01 3.51
263 267 2.510238 CAGCCTACCAGCGAGTGC 60.510 66.667 0.00 0.00 43.24 4.40
264 268 3.775654 AGCCTACCAGCGAGTGCC 61.776 66.667 0.00 0.00 44.31 5.01
265 269 4.082523 GCCTACCAGCGAGTGCCA 62.083 66.667 0.00 0.00 44.31 4.92
266 270 2.125512 CCTACCAGCGAGTGCCAC 60.126 66.667 0.00 0.00 44.31 5.01
267 271 2.125512 CTACCAGCGAGTGCCACC 60.126 66.667 0.00 0.00 44.31 4.61
268 272 2.603473 TACCAGCGAGTGCCACCT 60.603 61.111 0.00 0.00 44.31 4.00
269 273 2.172483 CTACCAGCGAGTGCCACCTT 62.172 60.000 0.00 0.00 44.31 3.50
270 274 2.449031 TACCAGCGAGTGCCACCTTG 62.449 60.000 0.00 0.00 44.31 3.61
271 275 3.730761 CAGCGAGTGCCACCTTGC 61.731 66.667 0.00 0.00 44.31 4.01
272 276 4.254709 AGCGAGTGCCACCTTGCA 62.255 61.111 9.30 0.00 43.18 4.08
273 277 3.058160 GCGAGTGCCACCTTGCAT 61.058 61.111 0.00 0.00 44.30 3.96
274 278 1.745115 GCGAGTGCCACCTTGCATA 60.745 57.895 0.00 0.00 44.30 3.14
275 279 1.305219 GCGAGTGCCACCTTGCATAA 61.305 55.000 0.00 0.00 44.30 1.90
276 280 0.447801 CGAGTGCCACCTTGCATAAC 59.552 55.000 0.00 0.00 44.30 1.89
277 281 0.811281 GAGTGCCACCTTGCATAACC 59.189 55.000 0.00 0.00 44.30 2.85
278 282 0.112218 AGTGCCACCTTGCATAACCA 59.888 50.000 0.00 0.00 44.30 3.67
279 283 1.185315 GTGCCACCTTGCATAACCAT 58.815 50.000 0.00 0.00 44.30 3.55
280 284 1.135024 GTGCCACCTTGCATAACCATG 60.135 52.381 0.00 0.00 44.30 3.66
300 304 9.941325 AACCATGCATTTAACAAAAATATCAGA 57.059 25.926 0.00 0.00 0.00 3.27
301 305 9.590451 ACCATGCATTTAACAAAAATATCAGAG 57.410 29.630 0.00 0.00 0.00 3.35
302 306 9.037737 CCATGCATTTAACAAAAATATCAGAGG 57.962 33.333 0.00 0.00 0.00 3.69
303 307 9.590451 CATGCATTTAACAAAAATATCAGAGGT 57.410 29.630 0.00 0.00 0.00 3.85
304 308 9.807649 ATGCATTTAACAAAAATATCAGAGGTC 57.192 29.630 0.00 0.00 0.00 3.85
305 309 8.250332 TGCATTTAACAAAAATATCAGAGGTCC 58.750 33.333 0.00 0.00 0.00 4.46
306 310 8.470002 GCATTTAACAAAAATATCAGAGGTCCT 58.530 33.333 0.00 0.00 0.00 3.85
308 312 9.753674 ATTTAACAAAAATATCAGAGGTCCTCA 57.246 29.630 21.26 1.14 32.06 3.86
309 313 8.561738 TTAACAAAAATATCAGAGGTCCTCAC 57.438 34.615 21.26 0.00 32.06 3.51
310 314 5.501156 ACAAAAATATCAGAGGTCCTCACC 58.499 41.667 21.26 0.00 44.19 4.02
311 315 4.779993 AAAATATCAGAGGTCCTCACCC 57.220 45.455 21.26 0.00 45.12 4.61
312 316 2.407340 ATATCAGAGGTCCTCACCCC 57.593 55.000 21.26 0.00 45.12 4.95
313 317 0.264955 TATCAGAGGTCCTCACCCCC 59.735 60.000 21.26 0.00 45.12 5.40
314 318 1.826384 ATCAGAGGTCCTCACCCCCA 61.826 60.000 21.26 0.00 45.12 4.96
315 319 1.307343 CAGAGGTCCTCACCCCCAT 60.307 63.158 21.26 0.00 45.12 4.00
316 320 1.003573 AGAGGTCCTCACCCCCATC 59.996 63.158 21.26 0.00 45.12 3.51
317 321 1.003573 GAGGTCCTCACCCCCATCT 59.996 63.158 14.46 0.00 45.12 2.90
318 322 0.264955 GAGGTCCTCACCCCCATCTA 59.735 60.000 14.46 0.00 45.12 1.98
319 323 0.722676 AGGTCCTCACCCCCATCTAA 59.277 55.000 0.00 0.00 45.12 2.10
320 324 1.082194 AGGTCCTCACCCCCATCTAAA 59.918 52.381 0.00 0.00 45.12 1.85
321 325 1.920351 GGTCCTCACCCCCATCTAAAA 59.080 52.381 0.00 0.00 36.54 1.52
322 326 2.310647 GGTCCTCACCCCCATCTAAAAA 59.689 50.000 0.00 0.00 36.54 1.94
360 364 8.877864 AATAATCCACACCTTCATCTAAAACA 57.122 30.769 0.00 0.00 0.00 2.83
361 365 8.877864 ATAATCCACACCTTCATCTAAAACAA 57.122 30.769 0.00 0.00 0.00 2.83
362 366 7.781324 AATCCACACCTTCATCTAAAACAAT 57.219 32.000 0.00 0.00 0.00 2.71
363 367 7.781324 ATCCACACCTTCATCTAAAACAATT 57.219 32.000 0.00 0.00 0.00 2.32
364 368 7.214467 TCCACACCTTCATCTAAAACAATTC 57.786 36.000 0.00 0.00 0.00 2.17
365 369 7.004086 TCCACACCTTCATCTAAAACAATTCT 58.996 34.615 0.00 0.00 0.00 2.40
366 370 8.160765 TCCACACCTTCATCTAAAACAATTCTA 58.839 33.333 0.00 0.00 0.00 2.10
367 371 8.792633 CCACACCTTCATCTAAAACAATTCTAA 58.207 33.333 0.00 0.00 0.00 2.10
381 385 9.463443 AAAACAATTCTAAAAGATTTCTCACCG 57.537 29.630 0.00 0.00 0.00 4.94
382 386 6.612306 ACAATTCTAAAAGATTTCTCACCGC 58.388 36.000 0.00 0.00 0.00 5.68
383 387 4.921470 TTCTAAAAGATTTCTCACCGCG 57.079 40.909 0.00 0.00 0.00 6.46
384 388 3.259064 TCTAAAAGATTTCTCACCGCGG 58.741 45.455 26.86 26.86 0.00 6.46
385 389 0.521735 AAAAGATTTCTCACCGCGGC 59.478 50.000 28.58 5.95 0.00 6.53
386 390 1.305930 AAAGATTTCTCACCGCGGCC 61.306 55.000 28.58 4.16 0.00 6.13
387 391 2.435938 GATTTCTCACCGCGGCCA 60.436 61.111 28.58 11.32 0.00 5.36
388 392 2.033448 ATTTCTCACCGCGGCCAA 59.967 55.556 28.58 11.39 0.00 4.52
389 393 2.253414 GATTTCTCACCGCGGCCAAC 62.253 60.000 28.58 5.00 0.00 3.77
402 406 4.347453 CCAACCAGCTTGCGCCAC 62.347 66.667 4.18 0.00 36.60 5.01
403 407 4.688419 CAACCAGCTTGCGCCACG 62.688 66.667 4.18 0.00 36.60 4.94
408 412 4.308458 AGCTTGCGCCACGTGGTA 62.308 61.111 33.92 18.85 37.57 3.25
409 413 3.124921 GCTTGCGCCACGTGGTAT 61.125 61.111 33.92 0.00 37.57 2.73
410 414 1.812093 GCTTGCGCCACGTGGTATA 60.812 57.895 33.92 18.14 37.57 1.47
411 415 1.762222 GCTTGCGCCACGTGGTATAG 61.762 60.000 33.92 24.63 37.57 1.31
412 416 1.762222 CTTGCGCCACGTGGTATAGC 61.762 60.000 33.92 29.92 37.57 2.97
413 417 2.106332 GCGCCACGTGGTATAGCT 59.894 61.111 33.92 0.00 37.57 3.32
414 418 2.237751 GCGCCACGTGGTATAGCTG 61.238 63.158 33.92 16.37 37.57 4.24
415 419 1.591594 CGCCACGTGGTATAGCTGG 60.592 63.158 33.92 7.53 37.57 4.85
416 420 1.520666 GCCACGTGGTATAGCTGGT 59.479 57.895 33.92 2.50 37.57 4.00
417 421 0.107848 GCCACGTGGTATAGCTGGTT 60.108 55.000 33.92 0.00 37.57 3.67
418 422 1.651987 CCACGTGGTATAGCTGGTTG 58.348 55.000 26.95 0.00 0.00 3.77
419 423 1.651987 CACGTGGTATAGCTGGTTGG 58.348 55.000 7.95 0.00 0.00 3.77
420 424 0.107848 ACGTGGTATAGCTGGTTGGC 60.108 55.000 0.00 0.00 0.00 4.52
421 425 0.178068 CGTGGTATAGCTGGTTGGCT 59.822 55.000 0.00 0.00 45.29 4.75
422 426 1.668419 GTGGTATAGCTGGTTGGCTG 58.332 55.000 0.00 0.00 43.01 4.85
423 427 0.107214 TGGTATAGCTGGTTGGCTGC 60.107 55.000 0.00 0.00 43.01 5.25
424 428 0.819666 GGTATAGCTGGTTGGCTGCC 60.820 60.000 12.87 12.87 43.01 4.85
425 429 0.819666 GTATAGCTGGTTGGCTGCCC 60.820 60.000 17.53 0.58 43.01 5.36
426 430 0.988145 TATAGCTGGTTGGCTGCCCT 60.988 55.000 17.53 7.17 43.01 5.19
427 431 1.867595 ATAGCTGGTTGGCTGCCCTT 61.868 55.000 17.53 0.00 43.01 3.95
428 432 2.484287 TAGCTGGTTGGCTGCCCTTC 62.484 60.000 17.53 6.27 43.01 3.46
429 433 2.115910 CTGGTTGGCTGCCCTTCA 59.884 61.111 17.53 10.21 0.00 3.02
430 434 2.203480 TGGTTGGCTGCCCTTCAC 60.203 61.111 17.53 7.50 0.00 3.18
431 435 2.203480 GGTTGGCTGCCCTTCACA 60.203 61.111 17.53 0.00 0.00 3.58
432 436 1.607467 GGTTGGCTGCCCTTCACAT 60.607 57.895 17.53 0.00 0.00 3.21
433 437 1.588082 GTTGGCTGCCCTTCACATG 59.412 57.895 17.53 0.00 0.00 3.21
434 438 1.153524 TTGGCTGCCCTTCACATGT 59.846 52.632 17.53 0.00 0.00 3.21
435 439 0.403655 TTGGCTGCCCTTCACATGTA 59.596 50.000 17.53 0.00 0.00 2.29
436 440 0.035152 TGGCTGCCCTTCACATGTAG 60.035 55.000 17.53 0.00 0.00 2.74
437 441 1.379642 GGCTGCCCTTCACATGTAGC 61.380 60.000 7.66 1.46 0.00 3.58
438 442 1.379642 GCTGCCCTTCACATGTAGCC 61.380 60.000 0.00 0.00 0.00 3.93
439 443 0.254178 CTGCCCTTCACATGTAGCCT 59.746 55.000 0.00 0.00 0.00 4.58
440 444 1.486310 CTGCCCTTCACATGTAGCCTA 59.514 52.381 0.00 0.00 0.00 3.93
441 445 1.912731 TGCCCTTCACATGTAGCCTAA 59.087 47.619 0.00 0.00 0.00 2.69
442 446 2.509548 TGCCCTTCACATGTAGCCTAAT 59.490 45.455 0.00 0.00 0.00 1.73
443 447 3.714280 TGCCCTTCACATGTAGCCTAATA 59.286 43.478 0.00 0.00 0.00 0.98
444 448 4.165180 TGCCCTTCACATGTAGCCTAATAA 59.835 41.667 0.00 0.00 0.00 1.40
445 449 5.163099 TGCCCTTCACATGTAGCCTAATAAT 60.163 40.000 0.00 0.00 0.00 1.28
446 450 6.043822 TGCCCTTCACATGTAGCCTAATAATA 59.956 38.462 0.00 0.00 0.00 0.98
447 451 6.940298 GCCCTTCACATGTAGCCTAATAATAA 59.060 38.462 0.00 0.00 0.00 1.40
448 452 7.611855 GCCCTTCACATGTAGCCTAATAATAAT 59.388 37.037 0.00 0.00 0.00 1.28
449 453 9.167311 CCCTTCACATGTAGCCTAATAATAATC 57.833 37.037 0.00 0.00 0.00 1.75
450 454 9.167311 CCTTCACATGTAGCCTAATAATAATCC 57.833 37.037 0.00 0.00 0.00 3.01
451 455 9.725019 CTTCACATGTAGCCTAATAATAATCCA 57.275 33.333 0.00 0.00 0.00 3.41
452 456 9.502091 TTCACATGTAGCCTAATAATAATCCAC 57.498 33.333 0.00 0.00 0.00 4.02
453 457 8.655901 TCACATGTAGCCTAATAATAATCCACA 58.344 33.333 0.00 0.00 0.00 4.17
454 458 8.721478 CACATGTAGCCTAATAATAATCCACAC 58.279 37.037 0.00 0.00 0.00 3.82
455 459 8.660435 ACATGTAGCCTAATAATAATCCACACT 58.340 33.333 0.00 0.00 0.00 3.55
456 460 9.155975 CATGTAGCCTAATAATAATCCACACTC 57.844 37.037 0.00 0.00 0.00 3.51
457 461 8.492415 TGTAGCCTAATAATAATCCACACTCT 57.508 34.615 0.00 0.00 0.00 3.24
458 462 8.585881 TGTAGCCTAATAATAATCCACACTCTC 58.414 37.037 0.00 0.00 0.00 3.20
459 463 7.618019 AGCCTAATAATAATCCACACTCTCA 57.382 36.000 0.00 0.00 0.00 3.27
460 464 8.212259 AGCCTAATAATAATCCACACTCTCAT 57.788 34.615 0.00 0.00 0.00 2.90
461 465 8.317679 AGCCTAATAATAATCCACACTCTCATC 58.682 37.037 0.00 0.00 0.00 2.92
462 466 8.317679 GCCTAATAATAATCCACACTCTCATCT 58.682 37.037 0.00 0.00 0.00 2.90
463 467 9.650539 CCTAATAATAATCCACACTCTCATCTG 57.349 37.037 0.00 0.00 0.00 2.90
467 471 7.856145 AATAATCCACACTCTCATCTGAAAC 57.144 36.000 0.00 0.00 0.00 2.78
468 472 4.897509 ATCCACACTCTCATCTGAAACA 57.102 40.909 0.00 0.00 0.00 2.83
469 473 4.687901 TCCACACTCTCATCTGAAACAA 57.312 40.909 0.00 0.00 0.00 2.83
470 474 5.233083 TCCACACTCTCATCTGAAACAAT 57.767 39.130 0.00 0.00 0.00 2.71
471 475 5.624159 TCCACACTCTCATCTGAAACAATT 58.376 37.500 0.00 0.00 0.00 2.32
472 476 6.064060 TCCACACTCTCATCTGAAACAATTT 58.936 36.000 0.00 0.00 0.00 1.82
473 477 6.547141 TCCACACTCTCATCTGAAACAATTTT 59.453 34.615 0.00 0.00 0.00 1.82
474 478 7.719193 TCCACACTCTCATCTGAAACAATTTTA 59.281 33.333 0.00 0.00 0.00 1.52
475 479 8.352201 CCACACTCTCATCTGAAACAATTTTAA 58.648 33.333 0.00 0.00 0.00 1.52
476 480 9.734620 CACACTCTCATCTGAAACAATTTTAAA 57.265 29.630 0.00 0.00 0.00 1.52
490 494 7.637709 ACAATTTTAAAAGATTTCTCACCGC 57.362 32.000 6.79 0.00 0.00 5.68
491 495 6.362283 ACAATTTTAAAAGATTTCTCACCGCG 59.638 34.615 6.79 0.00 0.00 6.46
492 496 4.413495 TTTAAAAGATTTCTCACCGCGG 57.587 40.909 26.86 26.86 0.00 6.46
493 497 0.521735 AAAAGATTTCTCACCGCGGC 59.478 50.000 28.58 5.95 0.00 6.53
494 498 1.305930 AAAGATTTCTCACCGCGGCC 61.306 55.000 28.58 4.16 0.00 6.13
495 499 2.435938 GATTTCTCACCGCGGCCA 60.436 61.111 28.58 11.32 0.00 5.36
496 500 2.033448 ATTTCTCACCGCGGCCAA 59.967 55.556 28.58 11.39 0.00 4.52
497 501 2.253414 GATTTCTCACCGCGGCCAAC 62.253 60.000 28.58 5.00 0.00 3.77
510 514 3.376078 CCAACCAGCTTGCGCCAT 61.376 61.111 4.18 0.00 36.60 4.40
511 515 2.126228 CAACCAGCTTGCGCCATG 60.126 61.111 4.18 0.00 36.60 3.66
512 516 2.598394 AACCAGCTTGCGCCATGT 60.598 55.556 4.18 0.00 36.60 3.21
513 517 2.922950 AACCAGCTTGCGCCATGTG 61.923 57.895 4.18 0.00 36.60 3.21
514 518 4.124351 CCAGCTTGCGCCATGTGG 62.124 66.667 4.18 2.86 36.60 4.17
524 528 4.993307 CCATGTGGCATAGCTGGT 57.007 55.556 0.00 0.00 0.00 4.00
525 529 3.196040 CCATGTGGCATAGCTGGTT 57.804 52.632 0.00 0.00 0.00 3.67
526 530 0.742505 CCATGTGGCATAGCTGGTTG 59.257 55.000 0.00 0.00 0.00 3.77
527 531 0.742505 CATGTGGCATAGCTGGTTGG 59.257 55.000 0.00 0.00 0.00 3.77
528 532 1.039233 ATGTGGCATAGCTGGTTGGC 61.039 55.000 0.00 4.54 38.77 4.52
529 533 2.044053 TGGCATAGCTGGTTGGCC 60.044 61.111 14.30 12.70 44.82 5.36
530 534 2.044053 GGCATAGCTGGTTGGCCA 60.044 61.111 0.00 0.00 44.01 5.36
531 535 2.418083 GGCATAGCTGGTTGGCCAC 61.418 63.158 3.88 0.00 44.01 5.01
533 537 1.754234 CATAGCTGGTTGGCCACCC 60.754 63.158 13.50 13.50 46.68 4.61
534 538 1.930656 ATAGCTGGTTGGCCACCCT 60.931 57.895 21.42 13.08 46.68 4.34
535 539 1.509548 ATAGCTGGTTGGCCACCCTT 61.510 55.000 21.42 8.70 46.68 3.95
536 540 2.137177 TAGCTGGTTGGCCACCCTTC 62.137 60.000 21.42 11.75 46.68 3.46
537 541 2.520458 CTGGTTGGCCACCCTTCA 59.480 61.111 21.42 6.68 46.68 3.02
538 542 1.077265 CTGGTTGGCCACCCTTCAT 59.923 57.895 21.42 0.00 46.68 2.57
539 543 1.228831 TGGTTGGCCACCCTTCATG 60.229 57.895 21.42 0.00 46.68 3.07
540 544 1.228862 GGTTGGCCACCCTTCATGT 60.229 57.895 13.06 0.00 40.19 3.21
541 545 1.250840 GGTTGGCCACCCTTCATGTC 61.251 60.000 13.06 0.00 40.19 3.06
542 546 0.251341 GTTGGCCACCCTTCATGTCT 60.251 55.000 3.88 0.00 0.00 3.41
543 547 1.004277 GTTGGCCACCCTTCATGTCTA 59.996 52.381 3.88 0.00 0.00 2.59
544 548 0.911769 TGGCCACCCTTCATGTCTAG 59.088 55.000 0.00 0.00 0.00 2.43
545 549 0.464554 GGCCACCCTTCATGTCTAGC 60.465 60.000 0.00 0.00 0.00 3.42
546 550 0.543749 GCCACCCTTCATGTCTAGCT 59.456 55.000 0.00 0.00 0.00 3.32
547 551 1.065126 GCCACCCTTCATGTCTAGCTT 60.065 52.381 0.00 0.00 0.00 3.74
548 552 2.170607 GCCACCCTTCATGTCTAGCTTA 59.829 50.000 0.00 0.00 0.00 3.09
549 553 3.370527 GCCACCCTTCATGTCTAGCTTAA 60.371 47.826 0.00 0.00 0.00 1.85
550 554 4.687219 GCCACCCTTCATGTCTAGCTTAAT 60.687 45.833 0.00 0.00 0.00 1.40
551 555 5.454755 GCCACCCTTCATGTCTAGCTTAATA 60.455 44.000 0.00 0.00 0.00 0.98
552 556 6.226787 CCACCCTTCATGTCTAGCTTAATAG 58.773 44.000 0.00 0.00 0.00 1.73
553 557 6.226787 CACCCTTCATGTCTAGCTTAATAGG 58.773 44.000 0.00 0.00 0.00 2.57
554 558 5.905913 ACCCTTCATGTCTAGCTTAATAGGT 59.094 40.000 0.00 0.00 35.90 3.08
555 559 6.387220 ACCCTTCATGTCTAGCTTAATAGGTT 59.613 38.462 0.00 0.00 33.36 3.50
556 560 7.092399 ACCCTTCATGTCTAGCTTAATAGGTTT 60.092 37.037 0.00 0.00 33.36 3.27
557 561 8.429641 CCCTTCATGTCTAGCTTAATAGGTTTA 58.570 37.037 0.00 0.00 33.36 2.01
558 562 9.832445 CCTTCATGTCTAGCTTAATAGGTTTAA 57.168 33.333 0.00 0.00 33.36 1.52
594 703 5.449177 GCTTGCTTCGGCTTTATCATTACTT 60.449 40.000 0.00 0.00 42.37 2.24
832 2708 7.360438 CGAGGAGAGAAAGTATCCTTGTTTTTG 60.360 40.741 0.00 0.00 43.57 2.44
835 2711 6.739112 AGAGAAAGTATCCTTGTTTTTGTGC 58.261 36.000 0.00 0.00 0.00 4.57
836 2712 6.547510 AGAGAAAGTATCCTTGTTTTTGTGCT 59.452 34.615 0.00 0.00 0.00 4.40
839 2751 8.352942 AGAAAGTATCCTTGTTTTTGTGCTAAG 58.647 33.333 0.00 0.00 0.00 2.18
843 2755 5.906113 TCCTTGTTTTTGTGCTAAGACAA 57.094 34.783 0.00 0.00 33.96 3.18
856 2780 0.961019 AAGACAACCACGTACGGCTA 59.039 50.000 21.06 0.00 0.00 3.93
900 2905 4.907879 ATCTTCGAGCCCATTTTCATTC 57.092 40.909 0.00 0.00 0.00 2.67
903 2908 5.496556 TCTTCGAGCCCATTTTCATTCTTA 58.503 37.500 0.00 0.00 0.00 2.10
920 2926 7.453393 TCATTCTTAGTGATTGTTCAGTCCTT 58.547 34.615 0.00 0.00 36.84 3.36
921 2927 7.388776 TCATTCTTAGTGATTGTTCAGTCCTTG 59.611 37.037 0.00 0.00 36.84 3.61
922 2928 5.551233 TCTTAGTGATTGTTCAGTCCTTGG 58.449 41.667 0.00 0.00 36.84 3.61
923 2929 3.864789 AGTGATTGTTCAGTCCTTGGT 57.135 42.857 0.00 0.00 29.06 3.67
924 2930 4.974645 AGTGATTGTTCAGTCCTTGGTA 57.025 40.909 0.00 0.00 29.06 3.25
925 2931 5.505181 AGTGATTGTTCAGTCCTTGGTAT 57.495 39.130 0.00 0.00 29.06 2.73
926 2932 6.620877 AGTGATTGTTCAGTCCTTGGTATA 57.379 37.500 0.00 0.00 29.06 1.47
927 2933 7.016153 AGTGATTGTTCAGTCCTTGGTATAA 57.984 36.000 0.00 0.00 29.06 0.98
928 2934 7.633789 AGTGATTGTTCAGTCCTTGGTATAAT 58.366 34.615 0.00 0.00 29.06 1.28
929 2935 7.770897 AGTGATTGTTCAGTCCTTGGTATAATC 59.229 37.037 0.00 0.00 29.06 1.75
930 2936 7.552687 GTGATTGTTCAGTCCTTGGTATAATCA 59.447 37.037 0.00 0.00 32.56 2.57
931 2937 8.274322 TGATTGTTCAGTCCTTGGTATAATCAT 58.726 33.333 0.00 0.00 31.39 2.45
932 2938 9.125026 GATTGTTCAGTCCTTGGTATAATCATT 57.875 33.333 0.00 0.00 0.00 2.57
933 2939 7.864108 TGTTCAGTCCTTGGTATAATCATTG 57.136 36.000 0.00 0.00 0.00 2.82
934 2940 6.828273 TGTTCAGTCCTTGGTATAATCATTGG 59.172 38.462 0.00 0.00 0.00 3.16
935 2941 6.575244 TCAGTCCTTGGTATAATCATTGGT 57.425 37.500 0.00 0.00 0.00 3.67
1007 3022 0.184211 ACTGGGTTAAACAAGCCCGT 59.816 50.000 0.00 0.54 45.19 5.28
1113 4145 2.949106 CTGCAGGCAACGACAAGG 59.051 61.111 5.57 0.00 46.39 3.61
1121 4153 1.067060 GGCAACGACAAGGAAAGCTTT 59.933 47.619 12.53 12.53 0.00 3.51
1178 4210 0.545071 TCTGCTCCACCTCCACATCA 60.545 55.000 0.00 0.00 0.00 3.07
1248 4320 2.236146 ACCGATCTGCATGTTAGGAACA 59.764 45.455 0.00 0.00 46.94 3.18
1249 4321 2.868583 CCGATCTGCATGTTAGGAACAG 59.131 50.000 0.00 0.00 45.95 3.16
1250 4322 3.525537 CGATCTGCATGTTAGGAACAGT 58.474 45.455 0.00 0.00 45.95 3.55
1252 4324 3.334583 TCTGCATGTTAGGAACAGTCC 57.665 47.619 0.00 0.00 45.95 3.85
1435 4530 1.553706 TCATGAGCAGAGCACTGAGA 58.446 50.000 15.88 1.49 46.03 3.27
1597 4717 1.374125 CGATCTGTCGTGGGTGCAA 60.374 57.895 0.00 0.00 42.78 4.08
1718 4838 1.418097 TTGCAAGAGCCTCCAGTCCA 61.418 55.000 0.00 0.00 41.13 4.02
1728 4854 0.250901 CTCCAGTCCAACCACTTGGG 60.251 60.000 0.00 0.00 46.50 4.12
1784 4910 1.065928 CAGTGCGGGTATCGAGTCC 59.934 63.158 0.00 0.00 42.43 3.85
2170 5296 0.893727 GCATCCCACGGAAGGTGTTT 60.894 55.000 0.00 0.00 45.52 2.83
2565 5711 5.158141 ACCCCTCAAGCTATATCTCAATCA 58.842 41.667 0.00 0.00 0.00 2.57
2620 5773 2.911723 CTGTTAACTTCTCGACTGCTCG 59.088 50.000 7.22 0.00 41.65 5.03
2646 5800 0.462789 GGTGACCCGTGTCCGATATT 59.537 55.000 0.00 0.00 41.01 1.28
2771 5927 2.173996 TCCCTTTCGTCCAACCTTTCTT 59.826 45.455 0.00 0.00 0.00 2.52
2774 5930 3.243068 CCTTTCGTCCAACCTTTCTTGTG 60.243 47.826 0.00 0.00 0.00 3.33
2789 5945 8.464404 ACCTTTCTTGTGTGATAATCAATCATG 58.536 33.333 0.00 0.00 46.21 3.07
2820 6979 8.907222 ATTTGCTTACATTCTGAACCAATTTT 57.093 26.923 0.00 0.00 0.00 1.82
2930 7090 9.787532 CAATATGGGCCGATAAATTATAAACTG 57.212 33.333 11.85 0.00 0.00 3.16
2932 7092 9.920946 ATATGGGCCGATAAATTATAAACTGAT 57.079 29.630 11.85 0.00 0.00 2.90
2980 7141 8.893219 TGCAATTGTTCTAGTAAGAGGATATG 57.107 34.615 7.40 0.00 31.96 1.78
3242 7504 1.748493 TGGGCCTATTTTCGTCAATGC 59.252 47.619 4.53 0.00 0.00 3.56
3310 7572 6.531240 CCTTACGCAGCAAAATCACAATAAAT 59.469 34.615 0.00 0.00 0.00 1.40
3317 7579 9.304731 GCAGCAAAATCACAATAAATCTCATAA 57.695 29.630 0.00 0.00 0.00 1.90
3424 7694 9.372369 GATAATTGCATCTATAGTCCTTGTACC 57.628 37.037 0.00 0.00 0.00 3.34
3443 7713 2.034879 CGCTGGCGATGTCCAACTT 61.035 57.895 9.51 0.00 42.83 2.66
3492 7762 1.081094 CGGTCCCGGTACATGAAAAC 58.919 55.000 0.00 0.00 35.56 2.43
3565 7836 5.616866 GCTTTGCATACGTGTTGTGTATTCT 60.617 40.000 0.00 0.00 30.28 2.40
3643 7914 9.547279 AGTGGGGTATTGAGAAATAAAAGAAAT 57.453 29.630 0.00 0.00 0.00 2.17
3656 9332 2.280592 GAAATATCGCGCGGGGGT 60.281 61.111 31.69 15.90 0.00 4.95
3759 9438 6.959954 AGGAGATGCACACCCTATATATGTAA 59.040 38.462 0.00 0.00 0.00 2.41
3846 9532 1.152735 TTTTTGGGCTGTACGGGCA 60.153 52.632 27.57 12.54 0.00 5.36
3851 9537 2.112815 GGGCTGTACGGGCATGTTC 61.113 63.158 27.57 8.03 0.00 3.18
4005 9737 0.692476 ACTGAGCCCACTGCATACAA 59.308 50.000 0.00 0.00 44.83 2.41
4161 9957 1.529865 GTACGCTTTTTGGAGCTCGTT 59.470 47.619 7.83 0.00 40.52 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 92 3.166434 TGGTGCCCCAACCACTAG 58.834 61.111 0.00 0.00 45.43 2.57
95 99 1.386155 CCATAAGGTGGTGCCCCAA 59.614 57.895 0.00 0.00 44.15 4.12
96 100 3.095421 CCATAAGGTGGTGCCCCA 58.905 61.111 0.00 0.00 43.44 4.96
105 109 0.745845 CTCAAGCAGCGCCATAAGGT 60.746 55.000 2.29 0.00 37.19 3.50
106 110 0.462581 TCTCAAGCAGCGCCATAAGG 60.463 55.000 2.29 0.00 38.23 2.69
107 111 0.935898 CTCTCAAGCAGCGCCATAAG 59.064 55.000 2.29 0.00 0.00 1.73
108 112 0.250234 ACTCTCAAGCAGCGCCATAA 59.750 50.000 2.29 0.00 0.00 1.90
109 113 1.111277 TACTCTCAAGCAGCGCCATA 58.889 50.000 2.29 0.00 0.00 2.74
110 114 0.250234 TTACTCTCAAGCAGCGCCAT 59.750 50.000 2.29 0.00 0.00 4.40
111 115 0.390340 CTTACTCTCAAGCAGCGCCA 60.390 55.000 2.29 0.00 0.00 5.69
112 116 0.390472 ACTTACTCTCAAGCAGCGCC 60.390 55.000 2.29 0.00 0.00 6.53
113 117 1.127582 CAACTTACTCTCAAGCAGCGC 59.872 52.381 0.00 0.00 0.00 5.92
114 118 2.156504 CACAACTTACTCTCAAGCAGCG 59.843 50.000 0.00 0.00 0.00 5.18
115 119 2.096019 GCACAACTTACTCTCAAGCAGC 60.096 50.000 0.00 0.00 0.00 5.25
116 120 2.156504 CGCACAACTTACTCTCAAGCAG 59.843 50.000 0.00 0.00 0.00 4.24
117 121 2.135139 CGCACAACTTACTCTCAAGCA 58.865 47.619 0.00 0.00 0.00 3.91
118 122 1.136224 GCGCACAACTTACTCTCAAGC 60.136 52.381 0.30 0.00 0.00 4.01
119 123 2.135139 TGCGCACAACTTACTCTCAAG 58.865 47.619 5.66 0.00 0.00 3.02
120 124 2.232756 TGCGCACAACTTACTCTCAA 57.767 45.000 5.66 0.00 0.00 3.02
121 125 2.455674 ATGCGCACAACTTACTCTCA 57.544 45.000 14.90 0.00 0.00 3.27
122 126 5.292101 AGAAATATGCGCACAACTTACTCTC 59.708 40.000 14.90 0.00 0.00 3.20
123 127 5.178797 AGAAATATGCGCACAACTTACTCT 58.821 37.500 14.90 3.96 0.00 3.24
124 128 5.470845 AGAAATATGCGCACAACTTACTC 57.529 39.130 14.90 1.50 0.00 2.59
125 129 7.553881 AATAGAAATATGCGCACAACTTACT 57.446 32.000 14.90 9.32 0.00 2.24
126 130 8.614994 AAAATAGAAATATGCGCACAACTTAC 57.385 30.769 14.90 1.09 0.00 2.34
128 132 9.632807 TTTAAAATAGAAATATGCGCACAACTT 57.367 25.926 14.90 3.49 0.00 2.66
129 133 9.632807 TTTTAAAATAGAAATATGCGCACAACT 57.367 25.926 14.90 10.83 0.00 3.16
153 157 6.546034 CGAAGGTGGGGATTCTATGTATTTTT 59.454 38.462 0.00 0.00 0.00 1.94
154 158 6.062095 CGAAGGTGGGGATTCTATGTATTTT 58.938 40.000 0.00 0.00 0.00 1.82
155 159 5.132144 ACGAAGGTGGGGATTCTATGTATTT 59.868 40.000 0.00 0.00 0.00 1.40
156 160 4.658901 ACGAAGGTGGGGATTCTATGTATT 59.341 41.667 0.00 0.00 0.00 1.89
157 161 4.232091 ACGAAGGTGGGGATTCTATGTAT 58.768 43.478 0.00 0.00 0.00 2.29
158 162 3.640029 GACGAAGGTGGGGATTCTATGTA 59.360 47.826 0.00 0.00 0.00 2.29
159 163 2.434702 GACGAAGGTGGGGATTCTATGT 59.565 50.000 0.00 0.00 0.00 2.29
160 164 2.700897 AGACGAAGGTGGGGATTCTATG 59.299 50.000 0.00 0.00 0.00 2.23
161 165 3.047695 AGACGAAGGTGGGGATTCTAT 57.952 47.619 0.00 0.00 0.00 1.98
162 166 2.544844 AGACGAAGGTGGGGATTCTA 57.455 50.000 0.00 0.00 0.00 2.10
163 167 2.544844 TAGACGAAGGTGGGGATTCT 57.455 50.000 0.00 0.00 0.00 2.40
164 168 3.622166 TTTAGACGAAGGTGGGGATTC 57.378 47.619 0.00 0.00 0.00 2.52
165 169 3.585732 TCTTTTAGACGAAGGTGGGGATT 59.414 43.478 0.00 0.00 0.00 3.01
166 170 3.178865 TCTTTTAGACGAAGGTGGGGAT 58.821 45.455 0.00 0.00 0.00 3.85
167 171 2.612000 TCTTTTAGACGAAGGTGGGGA 58.388 47.619 0.00 0.00 0.00 4.81
168 172 3.072211 GTTCTTTTAGACGAAGGTGGGG 58.928 50.000 0.00 0.00 0.00 4.96
169 173 3.735591 TGTTCTTTTAGACGAAGGTGGG 58.264 45.455 0.00 0.00 0.00 4.61
170 174 5.238583 AGATGTTCTTTTAGACGAAGGTGG 58.761 41.667 0.00 0.00 0.00 4.61
171 175 5.926542 TGAGATGTTCTTTTAGACGAAGGTG 59.073 40.000 0.00 0.00 0.00 4.00
172 176 6.015350 TCTGAGATGTTCTTTTAGACGAAGGT 60.015 38.462 0.00 0.00 0.00 3.50
173 177 6.390721 TCTGAGATGTTCTTTTAGACGAAGG 58.609 40.000 0.00 0.00 0.00 3.46
174 178 7.875316 TTCTGAGATGTTCTTTTAGACGAAG 57.125 36.000 0.00 0.00 0.00 3.79
175 179 8.657074 TTTTCTGAGATGTTCTTTTAGACGAA 57.343 30.769 0.00 0.00 0.00 3.85
176 180 8.657074 TTTTTCTGAGATGTTCTTTTAGACGA 57.343 30.769 0.00 0.00 0.00 4.20
220 224 8.123575 GCGGTGGTAATTTTGTTTTACATTTTT 58.876 29.630 0.00 0.00 32.38 1.94
221 225 7.280205 TGCGGTGGTAATTTTGTTTTACATTTT 59.720 29.630 0.00 0.00 32.38 1.82
222 226 6.761714 TGCGGTGGTAATTTTGTTTTACATTT 59.238 30.769 0.00 0.00 32.38 2.32
223 227 6.281405 TGCGGTGGTAATTTTGTTTTACATT 58.719 32.000 0.00 0.00 32.38 2.71
224 228 5.844004 TGCGGTGGTAATTTTGTTTTACAT 58.156 33.333 0.00 0.00 32.38 2.29
225 229 5.258456 TGCGGTGGTAATTTTGTTTTACA 57.742 34.783 0.00 0.00 32.38 2.41
226 230 4.149221 GCTGCGGTGGTAATTTTGTTTTAC 59.851 41.667 0.00 0.00 0.00 2.01
227 231 4.299978 GCTGCGGTGGTAATTTTGTTTTA 58.700 39.130 0.00 0.00 0.00 1.52
228 232 3.127589 GCTGCGGTGGTAATTTTGTTTT 58.872 40.909 0.00 0.00 0.00 2.43
229 233 2.547007 GGCTGCGGTGGTAATTTTGTTT 60.547 45.455 0.00 0.00 0.00 2.83
230 234 1.000394 GGCTGCGGTGGTAATTTTGTT 60.000 47.619 0.00 0.00 0.00 2.83
231 235 0.601057 GGCTGCGGTGGTAATTTTGT 59.399 50.000 0.00 0.00 0.00 2.83
232 236 0.887933 AGGCTGCGGTGGTAATTTTG 59.112 50.000 0.00 0.00 0.00 2.44
233 237 2.089201 GTAGGCTGCGGTGGTAATTTT 58.911 47.619 0.00 0.00 0.00 1.82
234 238 1.680860 GGTAGGCTGCGGTGGTAATTT 60.681 52.381 0.00 0.00 0.00 1.82
235 239 0.107361 GGTAGGCTGCGGTGGTAATT 60.107 55.000 0.00 0.00 0.00 1.40
236 240 1.268992 TGGTAGGCTGCGGTGGTAAT 61.269 55.000 0.00 0.00 0.00 1.89
237 241 1.895020 CTGGTAGGCTGCGGTGGTAA 61.895 60.000 0.00 0.00 0.00 2.85
238 242 2.284039 TGGTAGGCTGCGGTGGTA 60.284 61.111 0.00 0.00 0.00 3.25
239 243 3.706373 CTGGTAGGCTGCGGTGGT 61.706 66.667 0.00 0.00 0.00 4.16
245 249 2.510238 CACTCGCTGGTAGGCTGC 60.510 66.667 0.00 0.00 0.00 5.25
246 250 2.510238 GCACTCGCTGGTAGGCTG 60.510 66.667 0.00 0.00 34.30 4.85
247 251 3.775654 GGCACTCGCTGGTAGGCT 61.776 66.667 0.00 0.00 38.60 4.58
248 252 4.082523 TGGCACTCGCTGGTAGGC 62.083 66.667 0.00 0.00 38.60 3.93
249 253 2.125512 GTGGCACTCGCTGGTAGG 60.126 66.667 11.13 0.00 38.60 3.18
250 254 2.125512 GGTGGCACTCGCTGGTAG 60.126 66.667 18.45 0.00 38.60 3.18
251 255 2.214216 AAGGTGGCACTCGCTGGTA 61.214 57.895 18.45 0.00 38.60 3.25
252 256 3.560251 AAGGTGGCACTCGCTGGT 61.560 61.111 18.45 0.00 38.60 4.00
253 257 3.052082 CAAGGTGGCACTCGCTGG 61.052 66.667 18.45 0.00 38.60 4.85
254 258 3.730761 GCAAGGTGGCACTCGCTG 61.731 66.667 18.45 10.46 38.60 5.18
255 259 4.254709 TGCAAGGTGGCACTCGCT 62.255 61.111 18.45 3.06 39.25 4.93
274 278 9.941325 TCTGATATTTTTGTTAAATGCATGGTT 57.059 25.926 0.00 0.00 0.00 3.67
275 279 9.590451 CTCTGATATTTTTGTTAAATGCATGGT 57.410 29.630 0.00 0.00 0.00 3.55
276 280 9.037737 CCTCTGATATTTTTGTTAAATGCATGG 57.962 33.333 0.00 0.00 0.00 3.66
277 281 9.590451 ACCTCTGATATTTTTGTTAAATGCATG 57.410 29.630 0.00 0.00 0.00 4.06
278 282 9.807649 GACCTCTGATATTTTTGTTAAATGCAT 57.192 29.630 0.00 0.00 0.00 3.96
279 283 8.250332 GGACCTCTGATATTTTTGTTAAATGCA 58.750 33.333 0.00 0.00 0.00 3.96
280 284 8.470002 AGGACCTCTGATATTTTTGTTAAATGC 58.530 33.333 0.00 0.00 0.00 3.56
282 286 9.753674 TGAGGACCTCTGATATTTTTGTTAAAT 57.246 29.630 22.14 0.00 0.00 1.40
283 287 9.010029 GTGAGGACCTCTGATATTTTTGTTAAA 57.990 33.333 22.14 0.00 0.00 1.52
284 288 7.610305 GGTGAGGACCTCTGATATTTTTGTTAA 59.390 37.037 22.14 0.00 39.47 2.01
285 289 7.110155 GGTGAGGACCTCTGATATTTTTGTTA 58.890 38.462 22.14 0.00 39.47 2.41
286 290 5.946377 GGTGAGGACCTCTGATATTTTTGTT 59.054 40.000 22.14 0.00 39.47 2.83
287 291 5.501156 GGTGAGGACCTCTGATATTTTTGT 58.499 41.667 22.14 0.00 39.47 2.83
288 292 4.884164 GGGTGAGGACCTCTGATATTTTTG 59.116 45.833 22.14 0.00 42.66 2.44
289 293 4.079730 GGGGTGAGGACCTCTGATATTTTT 60.080 45.833 22.14 0.00 40.07 1.94
290 294 3.459969 GGGGTGAGGACCTCTGATATTTT 59.540 47.826 22.14 0.00 40.07 1.82
291 295 3.049344 GGGGTGAGGACCTCTGATATTT 58.951 50.000 22.14 0.00 40.07 1.40
292 296 2.695585 GGGGTGAGGACCTCTGATATT 58.304 52.381 22.14 0.00 40.07 1.28
293 297 1.132689 GGGGGTGAGGACCTCTGATAT 60.133 57.143 22.14 0.00 43.30 1.63
294 298 0.264955 GGGGGTGAGGACCTCTGATA 59.735 60.000 22.14 0.00 43.30 2.15
295 299 1.003573 GGGGGTGAGGACCTCTGAT 59.996 63.158 22.14 0.00 43.30 2.90
296 300 1.826384 ATGGGGGTGAGGACCTCTGA 61.826 60.000 22.14 0.00 43.30 3.27
297 301 1.307343 ATGGGGGTGAGGACCTCTG 60.307 63.158 22.14 0.00 43.30 3.35
298 302 1.003573 GATGGGGGTGAGGACCTCT 59.996 63.158 22.14 0.00 43.30 3.69
299 303 0.264955 TAGATGGGGGTGAGGACCTC 59.735 60.000 15.13 15.13 42.98 3.85
300 304 0.722676 TTAGATGGGGGTGAGGACCT 59.277 55.000 0.00 0.00 42.66 3.85
301 305 1.591768 TTTAGATGGGGGTGAGGACC 58.408 55.000 0.00 0.00 42.27 4.46
302 306 3.732048 TTTTTAGATGGGGGTGAGGAC 57.268 47.619 0.00 0.00 0.00 3.85
334 338 9.308000 TGTTTTAGATGAAGGTGTGGATTATTT 57.692 29.630 0.00 0.00 0.00 1.40
335 339 8.877864 TGTTTTAGATGAAGGTGTGGATTATT 57.122 30.769 0.00 0.00 0.00 1.40
336 340 8.877864 TTGTTTTAGATGAAGGTGTGGATTAT 57.122 30.769 0.00 0.00 0.00 1.28
337 341 8.877864 ATTGTTTTAGATGAAGGTGTGGATTA 57.122 30.769 0.00 0.00 0.00 1.75
338 342 7.781324 ATTGTTTTAGATGAAGGTGTGGATT 57.219 32.000 0.00 0.00 0.00 3.01
339 343 7.671398 AGAATTGTTTTAGATGAAGGTGTGGAT 59.329 33.333 0.00 0.00 0.00 3.41
340 344 7.004086 AGAATTGTTTTAGATGAAGGTGTGGA 58.996 34.615 0.00 0.00 0.00 4.02
341 345 7.219484 AGAATTGTTTTAGATGAAGGTGTGG 57.781 36.000 0.00 0.00 0.00 4.17
355 359 9.463443 CGGTGAGAAATCTTTTAGAATTGTTTT 57.537 29.630 0.00 0.00 0.00 2.43
356 360 7.595130 GCGGTGAGAAATCTTTTAGAATTGTTT 59.405 33.333 0.00 0.00 0.00 2.83
357 361 7.084486 GCGGTGAGAAATCTTTTAGAATTGTT 58.916 34.615 0.00 0.00 0.00 2.83
358 362 6.612306 GCGGTGAGAAATCTTTTAGAATTGT 58.388 36.000 0.00 0.00 0.00 2.71
359 363 5.734498 CGCGGTGAGAAATCTTTTAGAATTG 59.266 40.000 0.00 0.00 0.00 2.32
360 364 5.163754 CCGCGGTGAGAAATCTTTTAGAATT 60.164 40.000 19.50 0.00 0.00 2.17
361 365 4.332819 CCGCGGTGAGAAATCTTTTAGAAT 59.667 41.667 19.50 0.00 0.00 2.40
362 366 3.682858 CCGCGGTGAGAAATCTTTTAGAA 59.317 43.478 19.50 0.00 0.00 2.10
363 367 3.259064 CCGCGGTGAGAAATCTTTTAGA 58.741 45.455 19.50 0.00 0.00 2.10
364 368 2.223044 GCCGCGGTGAGAAATCTTTTAG 60.223 50.000 28.70 0.00 0.00 1.85
365 369 1.735571 GCCGCGGTGAGAAATCTTTTA 59.264 47.619 28.70 0.00 0.00 1.52
366 370 0.521735 GCCGCGGTGAGAAATCTTTT 59.478 50.000 28.70 0.00 0.00 2.27
367 371 1.305930 GGCCGCGGTGAGAAATCTTT 61.306 55.000 28.70 0.00 0.00 2.52
368 372 1.745489 GGCCGCGGTGAGAAATCTT 60.745 57.895 28.70 0.00 0.00 2.40
369 373 2.125106 GGCCGCGGTGAGAAATCT 60.125 61.111 28.70 0.00 0.00 2.40
370 374 2.038269 TTGGCCGCGGTGAGAAATC 61.038 57.895 28.70 6.82 0.00 2.17
371 375 2.033448 TTGGCCGCGGTGAGAAAT 59.967 55.556 28.70 0.00 0.00 2.17
372 376 2.975799 GTTGGCCGCGGTGAGAAA 60.976 61.111 28.70 11.29 0.00 2.52
393 397 1.762222 GCTATACCACGTGGCGCAAG 61.762 60.000 34.26 24.63 39.32 4.01
394 398 1.812093 GCTATACCACGTGGCGCAA 60.812 57.895 34.26 17.53 39.32 4.85
395 399 2.202824 GCTATACCACGTGGCGCA 60.203 61.111 34.26 19.83 39.32 6.09
396 400 2.106332 AGCTATACCACGTGGCGC 59.894 61.111 34.26 27.73 39.32 6.53
397 401 1.591594 CCAGCTATACCACGTGGCG 60.592 63.158 34.26 20.07 39.32 5.69
398 402 0.107848 AACCAGCTATACCACGTGGC 60.108 55.000 34.26 19.48 39.32 5.01
399 403 1.651987 CAACCAGCTATACCACGTGG 58.348 55.000 32.83 32.83 42.17 4.94
400 404 1.651987 CCAACCAGCTATACCACGTG 58.348 55.000 9.08 9.08 0.00 4.49
401 405 0.107848 GCCAACCAGCTATACCACGT 60.108 55.000 0.00 0.00 0.00 4.49
402 406 0.178068 AGCCAACCAGCTATACCACG 59.822 55.000 0.00 0.00 42.70 4.94
403 407 1.668419 CAGCCAACCAGCTATACCAC 58.332 55.000 0.00 0.00 42.61 4.16
404 408 0.107214 GCAGCCAACCAGCTATACCA 60.107 55.000 0.00 0.00 42.61 3.25
405 409 0.819666 GGCAGCCAACCAGCTATACC 60.820 60.000 6.55 0.00 42.61 2.73
406 410 0.819666 GGGCAGCCAACCAGCTATAC 60.820 60.000 15.19 0.00 42.61 1.47
407 411 0.988145 AGGGCAGCCAACCAGCTATA 60.988 55.000 15.19 0.00 42.61 1.31
408 412 1.867595 AAGGGCAGCCAACCAGCTAT 61.868 55.000 15.19 0.00 42.61 2.97
409 413 2.484287 GAAGGGCAGCCAACCAGCTA 62.484 60.000 15.19 0.00 42.61 3.32
410 414 3.875510 GAAGGGCAGCCAACCAGCT 62.876 63.158 15.19 0.00 46.45 4.24
411 415 3.376918 GAAGGGCAGCCAACCAGC 61.377 66.667 15.19 0.00 0.00 4.85
412 416 2.115910 TGAAGGGCAGCCAACCAG 59.884 61.111 15.19 0.00 0.00 4.00
413 417 2.203480 GTGAAGGGCAGCCAACCA 60.203 61.111 15.19 4.16 0.00 3.67
414 418 1.607467 ATGTGAAGGGCAGCCAACC 60.607 57.895 15.19 1.17 0.00 3.77
415 419 1.181098 ACATGTGAAGGGCAGCCAAC 61.181 55.000 15.19 6.31 0.00 3.77
416 420 0.403655 TACATGTGAAGGGCAGCCAA 59.596 50.000 15.19 0.00 0.00 4.52
417 421 0.035152 CTACATGTGAAGGGCAGCCA 60.035 55.000 15.19 0.00 0.00 4.75
418 422 1.379642 GCTACATGTGAAGGGCAGCC 61.380 60.000 9.11 1.26 0.00 4.85
419 423 1.379642 GGCTACATGTGAAGGGCAGC 61.380 60.000 9.11 7.31 0.00 5.25
420 424 0.254178 AGGCTACATGTGAAGGGCAG 59.746 55.000 9.11 0.00 0.00 4.85
421 425 1.578897 TAGGCTACATGTGAAGGGCA 58.421 50.000 9.11 0.00 0.00 5.36
422 426 2.710096 TTAGGCTACATGTGAAGGGC 57.290 50.000 9.11 8.33 0.00 5.19
423 427 9.167311 GATTATTATTAGGCTACATGTGAAGGG 57.833 37.037 9.11 0.00 0.00 3.95
424 428 9.167311 GGATTATTATTAGGCTACATGTGAAGG 57.833 37.037 9.11 0.00 0.00 3.46
425 429 9.725019 TGGATTATTATTAGGCTACATGTGAAG 57.275 33.333 9.11 0.00 0.00 3.02
426 430 9.502091 GTGGATTATTATTAGGCTACATGTGAA 57.498 33.333 9.11 0.00 0.00 3.18
427 431 8.655901 TGTGGATTATTATTAGGCTACATGTGA 58.344 33.333 9.11 0.00 0.00 3.58
428 432 8.721478 GTGTGGATTATTATTAGGCTACATGTG 58.279 37.037 9.11 0.00 0.00 3.21
429 433 8.660435 AGTGTGGATTATTATTAGGCTACATGT 58.340 33.333 2.69 2.69 0.00 3.21
430 434 9.155975 GAGTGTGGATTATTATTAGGCTACATG 57.844 37.037 0.00 0.00 0.00 3.21
431 435 9.105844 AGAGTGTGGATTATTATTAGGCTACAT 57.894 33.333 0.00 0.00 0.00 2.29
432 436 8.492415 AGAGTGTGGATTATTATTAGGCTACA 57.508 34.615 0.00 0.00 0.00 2.74
433 437 8.585881 TGAGAGTGTGGATTATTATTAGGCTAC 58.414 37.037 0.00 0.00 0.00 3.58
434 438 8.721133 TGAGAGTGTGGATTATTATTAGGCTA 57.279 34.615 0.00 0.00 0.00 3.93
435 439 7.618019 TGAGAGTGTGGATTATTATTAGGCT 57.382 36.000 0.00 0.00 0.00 4.58
436 440 8.317679 AGATGAGAGTGTGGATTATTATTAGGC 58.682 37.037 0.00 0.00 0.00 3.93
437 441 9.650539 CAGATGAGAGTGTGGATTATTATTAGG 57.349 37.037 0.00 0.00 0.00 2.69
441 445 9.553064 GTTTCAGATGAGAGTGTGGATTATTAT 57.447 33.333 0.00 0.00 0.00 1.28
442 446 8.539544 TGTTTCAGATGAGAGTGTGGATTATTA 58.460 33.333 0.00 0.00 0.00 0.98
443 447 7.397221 TGTTTCAGATGAGAGTGTGGATTATT 58.603 34.615 0.00 0.00 0.00 1.40
444 448 6.950842 TGTTTCAGATGAGAGTGTGGATTAT 58.049 36.000 0.00 0.00 0.00 1.28
445 449 6.358974 TGTTTCAGATGAGAGTGTGGATTA 57.641 37.500 0.00 0.00 0.00 1.75
446 450 5.233083 TGTTTCAGATGAGAGTGTGGATT 57.767 39.130 0.00 0.00 0.00 3.01
447 451 4.897509 TGTTTCAGATGAGAGTGTGGAT 57.102 40.909 0.00 0.00 0.00 3.41
448 452 4.687901 TTGTTTCAGATGAGAGTGTGGA 57.312 40.909 0.00 0.00 0.00 4.02
449 453 5.954296 AATTGTTTCAGATGAGAGTGTGG 57.046 39.130 0.00 0.00 0.00 4.17
450 454 9.734620 TTTAAAATTGTTTCAGATGAGAGTGTG 57.265 29.630 0.00 0.00 0.00 3.82
464 468 8.547894 GCGGTGAGAAATCTTTTAAAATTGTTT 58.452 29.630 0.09 3.53 0.00 2.83
465 469 7.096230 CGCGGTGAGAAATCTTTTAAAATTGTT 60.096 33.333 0.00 0.00 0.00 2.83
466 470 6.362283 CGCGGTGAGAAATCTTTTAAAATTGT 59.638 34.615 0.00 0.00 0.00 2.71
467 471 6.183359 CCGCGGTGAGAAATCTTTTAAAATTG 60.183 38.462 19.50 0.00 0.00 2.32
468 472 5.861787 CCGCGGTGAGAAATCTTTTAAAATT 59.138 36.000 19.50 0.00 0.00 1.82
469 473 5.399013 CCGCGGTGAGAAATCTTTTAAAAT 58.601 37.500 19.50 0.00 0.00 1.82
470 474 4.789784 CCGCGGTGAGAAATCTTTTAAAA 58.210 39.130 19.50 0.00 0.00 1.52
471 475 3.365565 GCCGCGGTGAGAAATCTTTTAAA 60.366 43.478 28.70 0.00 0.00 1.52
472 476 2.160813 GCCGCGGTGAGAAATCTTTTAA 59.839 45.455 28.70 0.00 0.00 1.52
473 477 1.735571 GCCGCGGTGAGAAATCTTTTA 59.264 47.619 28.70 0.00 0.00 1.52
474 478 0.521735 GCCGCGGTGAGAAATCTTTT 59.478 50.000 28.70 0.00 0.00 2.27
475 479 1.305930 GGCCGCGGTGAGAAATCTTT 61.306 55.000 28.70 0.00 0.00 2.52
476 480 1.745489 GGCCGCGGTGAGAAATCTT 60.745 57.895 28.70 0.00 0.00 2.40
477 481 2.125106 GGCCGCGGTGAGAAATCT 60.125 61.111 28.70 0.00 0.00 2.40
478 482 2.038269 TTGGCCGCGGTGAGAAATC 61.038 57.895 28.70 6.82 0.00 2.17
479 483 2.033448 TTGGCCGCGGTGAGAAAT 59.967 55.556 28.70 0.00 0.00 2.17
480 484 2.975799 GTTGGCCGCGGTGAGAAA 60.976 61.111 28.70 11.29 0.00 2.52
507 511 0.742505 CAACCAGCTATGCCACATGG 59.257 55.000 0.00 0.00 37.07 3.66
508 512 0.742505 CCAACCAGCTATGCCACATG 59.257 55.000 0.00 0.00 0.00 3.21
509 513 1.039233 GCCAACCAGCTATGCCACAT 61.039 55.000 0.00 0.00 0.00 3.21
510 514 1.678635 GCCAACCAGCTATGCCACA 60.679 57.895 0.00 0.00 0.00 4.17
511 515 2.418083 GGCCAACCAGCTATGCCAC 61.418 63.158 0.00 0.00 41.76 5.01
512 516 2.044053 GGCCAACCAGCTATGCCA 60.044 61.111 0.00 0.00 41.76 4.92
513 517 2.044053 TGGCCAACCAGCTATGCC 60.044 61.111 0.61 0.00 42.67 4.40
523 527 0.251341 AGACATGAAGGGTGGCCAAC 60.251 55.000 14.15 14.15 0.00 3.77
524 528 1.281867 CTAGACATGAAGGGTGGCCAA 59.718 52.381 7.24 0.00 0.00 4.52
525 529 0.911769 CTAGACATGAAGGGTGGCCA 59.088 55.000 0.00 0.00 0.00 5.36
526 530 0.464554 GCTAGACATGAAGGGTGGCC 60.465 60.000 0.00 0.00 0.00 5.36
527 531 0.543749 AGCTAGACATGAAGGGTGGC 59.456 55.000 0.00 0.00 0.00 5.01
528 532 4.487714 TTAAGCTAGACATGAAGGGTGG 57.512 45.455 0.00 0.00 0.00 4.61
529 533 6.183361 ACCTATTAAGCTAGACATGAAGGGTG 60.183 42.308 0.00 0.00 0.00 4.61
530 534 5.905913 ACCTATTAAGCTAGACATGAAGGGT 59.094 40.000 0.00 0.00 0.00 4.34
531 535 6.426646 ACCTATTAAGCTAGACATGAAGGG 57.573 41.667 0.00 0.00 0.00 3.95
532 536 9.832445 TTAAACCTATTAAGCTAGACATGAAGG 57.168 33.333 0.00 0.00 0.00 3.46
537 541 9.477484 CGACATTAAACCTATTAAGCTAGACAT 57.523 33.333 0.00 0.00 0.00 3.06
538 542 7.437267 GCGACATTAAACCTATTAAGCTAGACA 59.563 37.037 0.00 0.00 0.00 3.41
539 543 7.652507 AGCGACATTAAACCTATTAAGCTAGAC 59.347 37.037 0.00 0.00 0.00 2.59
540 544 7.723324 AGCGACATTAAACCTATTAAGCTAGA 58.277 34.615 0.00 0.00 0.00 2.43
541 545 7.148950 CGAGCGACATTAAACCTATTAAGCTAG 60.149 40.741 0.00 0.00 0.00 3.42
542 546 6.639686 CGAGCGACATTAAACCTATTAAGCTA 59.360 38.462 0.00 0.00 0.00 3.32
543 547 5.462398 CGAGCGACATTAAACCTATTAAGCT 59.538 40.000 0.00 0.00 0.00 3.74
544 548 5.461078 TCGAGCGACATTAAACCTATTAAGC 59.539 40.000 0.00 0.00 0.00 3.09
545 549 6.144080 CCTCGAGCGACATTAAACCTATTAAG 59.856 42.308 6.99 0.00 0.00 1.85
546 550 5.981315 CCTCGAGCGACATTAAACCTATTAA 59.019 40.000 6.99 0.00 0.00 1.40
547 551 5.526115 CCTCGAGCGACATTAAACCTATTA 58.474 41.667 6.99 0.00 0.00 0.98
548 552 4.369182 CCTCGAGCGACATTAAACCTATT 58.631 43.478 6.99 0.00 0.00 1.73
549 553 3.799232 GCCTCGAGCGACATTAAACCTAT 60.799 47.826 6.99 0.00 0.00 2.57
550 554 2.480759 GCCTCGAGCGACATTAAACCTA 60.481 50.000 6.99 0.00 0.00 3.08
551 555 1.739371 GCCTCGAGCGACATTAAACCT 60.739 52.381 6.99 0.00 0.00 3.50
552 556 0.651031 GCCTCGAGCGACATTAAACC 59.349 55.000 6.99 0.00 0.00 3.27
832 2708 1.717645 CGTACGTGGTTGTCTTAGCAC 59.282 52.381 7.22 0.00 41.78 4.40
835 2711 1.068055 AGCCGTACGTGGTTGTCTTAG 60.068 52.381 15.21 0.00 0.00 2.18
836 2712 0.961019 AGCCGTACGTGGTTGTCTTA 59.039 50.000 15.21 0.00 0.00 2.10
839 2751 0.039256 TGTAGCCGTACGTGGTTGTC 60.039 55.000 15.21 6.54 30.95 3.18
843 2755 2.639327 GGGTGTAGCCGTACGTGGT 61.639 63.158 15.21 13.31 38.44 4.16
900 2905 5.308825 ACCAAGGACTGAACAATCACTAAG 58.691 41.667 0.00 0.00 0.00 2.18
903 2908 3.864789 ACCAAGGACTGAACAATCACT 57.135 42.857 0.00 0.00 0.00 3.41
926 2932 9.261180 CGTACAAGAATCTATGTACCAATGATT 57.739 33.333 19.80 0.00 45.74 2.57
927 2933 8.421784 ACGTACAAGAATCTATGTACCAATGAT 58.578 33.333 19.80 6.16 45.74 2.45
928 2934 7.704899 CACGTACAAGAATCTATGTACCAATGA 59.295 37.037 19.80 0.00 45.74 2.57
929 2935 7.491372 ACACGTACAAGAATCTATGTACCAATG 59.509 37.037 19.80 17.94 45.74 2.82
930 2936 7.491372 CACACGTACAAGAATCTATGTACCAAT 59.509 37.037 19.80 10.26 45.74 3.16
931 2937 6.809689 CACACGTACAAGAATCTATGTACCAA 59.190 38.462 19.80 0.00 45.74 3.67
932 2938 6.327154 CACACGTACAAGAATCTATGTACCA 58.673 40.000 19.80 0.00 45.74 3.25
933 2939 5.231568 GCACACGTACAAGAATCTATGTACC 59.768 44.000 19.80 9.50 45.74 3.34
934 2940 6.034591 AGCACACGTACAAGAATCTATGTAC 58.965 40.000 17.68 17.68 45.29 2.90
935 2941 6.203808 AGCACACGTACAAGAATCTATGTA 57.796 37.500 0.00 0.00 0.00 2.29
1007 3022 7.767198 GCCATTGGAAGTTACAGTAGTATACAA 59.233 37.037 6.95 0.00 46.26 2.41
1113 4145 3.502191 TGACACCACAACAAAGCTTTC 57.498 42.857 9.23 0.00 0.00 2.62
1178 4210 1.270274 TCATGCACGTACGTACCTGTT 59.730 47.619 22.34 8.00 0.00 3.16
1248 4320 5.719085 AGAAACATCAGAGTGTCATAGGACT 59.281 40.000 9.22 0.00 44.61 3.85
1249 4321 5.971763 AGAAACATCAGAGTGTCATAGGAC 58.028 41.667 0.00 0.00 44.57 3.85
1250 4322 6.611613 AAGAAACATCAGAGTGTCATAGGA 57.388 37.500 0.00 0.00 0.00 2.94
1252 4324 9.429359 ACTAAAAGAAACATCAGAGTGTCATAG 57.571 33.333 0.00 0.00 0.00 2.23
1263 4354 4.379394 GCGGCATCACTAAAAGAAACATCA 60.379 41.667 0.00 0.00 0.00 3.07
1435 4530 3.580319 GTTGTGGTGCCCCTCCCT 61.580 66.667 0.00 0.00 0.00 4.20
1450 4545 0.032813 CCTTGCCCTCCATGATGGTT 60.033 55.000 11.87 0.00 39.03 3.67
1519 4632 2.765969 CCCAGGCCCAATGTCACT 59.234 61.111 0.00 0.00 0.00 3.41
1597 4717 4.183686 GAGTTGCATGGCGCGCAT 62.184 61.111 34.42 20.93 46.97 4.73
1718 4838 1.152269 AGCCATTGCCCAAGTGGTT 60.152 52.632 0.00 3.67 38.69 3.67
1784 4910 4.492611 GTCTTTAAACCTCCTCCGTACTG 58.507 47.826 0.00 0.00 0.00 2.74
2041 5167 3.636231 CCCGAGGTGTTGCTGGGA 61.636 66.667 0.00 0.00 42.77 4.37
2565 5711 2.292828 TTTTTGGCAAGCTAGCTCCT 57.707 45.000 19.65 0.00 34.17 3.69
2620 5773 2.030562 CACGGGTCACCCACTGTC 59.969 66.667 15.17 0.00 45.83 3.51
2646 5800 2.753296 ACGGAAAATAACAACGACGGA 58.247 42.857 0.00 0.00 0.00 4.69
2721 5877 9.750125 AAAAGTGAAAGATGAAACCTTACATTC 57.250 29.630 0.00 0.00 0.00 2.67
2729 5885 6.040955 AGGGAAGAAAAGTGAAAGATGAAACC 59.959 38.462 0.00 0.00 0.00 3.27
2903 7063 8.966868 AGTTTATAATTTATCGGCCCATATTGG 58.033 33.333 0.00 0.00 37.25 3.16
2932 7092 9.999660 TGCAACGGGTATAAATATTCTAATACA 57.000 29.630 13.37 0.00 0.00 2.29
3242 7504 7.397892 TGAAGATCTACTGAAGGTTCTAGTG 57.602 40.000 0.00 0.00 0.00 2.74
3310 7572 2.116238 GGGTACACCTGGCTTATGAGA 58.884 52.381 0.00 0.00 35.85 3.27
3350 7620 6.986817 CCTACTATCATCGAGATTGGTTGTTT 59.013 38.462 0.00 0.00 38.19 2.83
3424 7694 3.499737 GTTGGACATCGCCAGCGG 61.500 66.667 12.71 0.00 39.52 5.52
3492 7762 1.136305 AGGGACCGTATTGATCACGTG 59.864 52.381 9.94 9.94 37.71 4.49
3537 7807 3.906008 CACAACACGTATGCAAAGCTTAC 59.094 43.478 0.00 0.00 36.33 2.34
3540 7810 1.946768 ACACAACACGTATGCAAAGCT 59.053 42.857 0.00 0.00 0.00 3.74
3543 7813 5.684850 CAGAATACACAACACGTATGCAAA 58.315 37.500 0.00 0.00 28.50 3.68
3554 7824 3.319238 GCATACGGCAGAATACACAAC 57.681 47.619 0.00 0.00 43.97 3.32
3688 9365 2.815647 GTGGCTAGCGCGCTTCTT 60.816 61.111 41.04 18.45 36.88 2.52
3846 9532 7.627726 GCCGTAGCTATAAAACAAAAGGAACAT 60.628 37.037 0.00 0.00 35.50 2.71
3851 9537 4.201980 GGGCCGTAGCTATAAAACAAAAGG 60.202 45.833 0.00 0.00 39.73 3.11
3926 9617 2.247437 GCTCGCGCCAAATAGGAGG 61.247 63.158 0.00 0.00 41.22 4.30
3958 9672 4.335647 CCAGGTTGCTCGTGCCCT 62.336 66.667 7.05 4.23 38.71 5.19
3959 9673 4.643387 ACCAGGTTGCTCGTGCCC 62.643 66.667 7.05 1.73 38.71 5.36
4041 9775 7.528481 AAAATGTTGACCGGTTCTTAAAAAC 57.472 32.000 9.42 6.05 0.00 2.43
4075 9810 8.265998 AGTTTTAAATTCGAAAAATGTTCAGCG 58.734 29.630 0.00 0.00 0.00 5.18
4273 10074 9.533253 CCTAAATTTTGAGAAAATGTTCACTGT 57.467 29.630 0.00 0.00 40.05 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.