Multiple sequence alignment - TraesCS7A01G185400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G185400 chr7A 100.000 8691 0 0 1 8691 139524687 139515997 0.000000e+00 16050
1 TraesCS7A01G185400 chr7A 97.196 107 3 0 3490 3596 125702971 125703077 1.930000e-41 182
2 TraesCS7A01G185400 chr7A 96.296 108 4 0 3490 3597 700969973 700969866 2.490000e-40 178
3 TraesCS7A01G185400 chr7D 95.099 4550 172 24 3595 8130 139836707 139832195 0.000000e+00 7119
4 TraesCS7A01G185400 chr7D 96.328 2206 49 12 1292 3491 139838885 139836706 0.000000e+00 3596
5 TraesCS7A01G185400 chr7D 89.228 1309 75 23 1 1296 139840176 139838921 0.000000e+00 1576
6 TraesCS7A01G185400 chr7D 94.139 546 29 3 8141 8684 139831922 139831378 0.000000e+00 828
7 TraesCS7A01G185400 chr7D 96.262 107 4 0 3490 3596 35557958 35557852 8.970000e-40 176
8 TraesCS7A01G185400 chr7B 94.364 4631 198 28 3595 8214 104767042 104762464 0.000000e+00 7047
9 TraesCS7A01G185400 chr7B 94.645 2913 99 21 599 3491 104769916 104767041 0.000000e+00 4462
10 TraesCS7A01G185400 chr7B 90.584 531 24 10 1 522 104770431 104769918 0.000000e+00 680
11 TraesCS7A01G185400 chr1B 98.131 107 2 0 3490 3596 229263268 229263162 4.140000e-43 187
12 TraesCS7A01G185400 chr1B 97.196 107 3 0 3490 3596 626498463 626498569 1.930000e-41 182
13 TraesCS7A01G185400 chr3B 97.196 107 2 1 3490 3596 630305437 630305542 6.930000e-41 180
14 TraesCS7A01G185400 chrUn 96.296 108 4 0 3490 3597 294910282 294910389 2.490000e-40 178
15 TraesCS7A01G185400 chr5B 96.296 108 4 0 3489 3596 511610742 511610849 2.490000e-40 178
16 TraesCS7A01G185400 chr1D 95.495 111 5 0 3487 3597 452796 452906 2.490000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G185400 chr7A 139515997 139524687 8690 True 16050.00 16050 100.000000 1 8691 1 chr7A.!!$R1 8690
1 TraesCS7A01G185400 chr7D 139831378 139840176 8798 True 3279.75 7119 93.698500 1 8684 4 chr7D.!!$R2 8683
2 TraesCS7A01G185400 chr7B 104762464 104770431 7967 True 4063.00 7047 93.197667 1 8214 3 chr7B.!!$R1 8213

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
305 309 0.033228 TGAATTTTGGGCGTTGGCAG 59.967 50.0 0.00 0.00 42.47 4.85 F
306 310 0.033366 GAATTTTGGGCGTTGGCAGT 59.967 50.0 0.00 0.00 42.47 4.40 F
527 536 0.036732 AGAGTGATTGCCTTGCCGAA 59.963 50.0 0.00 0.00 0.00 4.30 F
536 545 0.039527 GCCTTGCCGAATTCGTTGTT 60.040 50.0 25.10 0.00 37.74 2.83 F
2357 2437 0.452987 GACAGCGTACGGTATGTCCA 59.547 55.0 20.88 0.00 36.83 4.02 F
3516 3597 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.0 0.00 0.00 0.00 4.02 F
3584 3665 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.0 22.30 0.00 32.00 5.14 F
4125 4211 0.105246 AGATGGGGGAGTAGCTGGAG 60.105 60.0 0.00 0.00 0.00 3.86 F
4126 4212 0.399233 GATGGGGGAGTAGCTGGAGT 60.399 60.0 0.00 0.00 0.00 3.85 F
5688 5774 0.386226 GCGAGTGCGTCTATCTAGGC 60.386 60.0 0.00 0.00 40.36 3.93 F
5848 5934 0.030369 ACGACTTCACGTGTGTCCTC 59.970 55.0 25.98 12.32 44.84 3.71 F
6487 6574 0.179103 GCATTGGGCCAGTGCATTAC 60.179 55.0 39.20 16.71 44.57 1.89 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1761 1829 0.324943 AAGGTCCCCGTTGAGTGATG 59.675 55.000 0.00 0.00 0.00 3.07 R
2086 2162 4.904251 ACATTATGTATGTCTCCTCAGCCT 59.096 41.667 0.00 0.00 44.15 4.58 R
2429 2509 4.801330 TCCGAGTTACAGTTGATCATGT 57.199 40.909 7.12 7.12 0.00 3.21 R
2509 2589 5.565509 TGTCTTATATTTGGCCTTGACACA 58.434 37.500 3.32 0.00 0.00 3.72 R
3565 3646 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30 R
4814 4900 1.061131 CAAGCTGCATGTACAGTACGC 59.939 52.381 0.33 5.09 39.96 4.42 R
4966 5052 1.379044 GATTCCACACAGGCTGGGG 60.379 63.158 22.78 17.67 46.50 4.96 R
5660 5746 0.161870 GACGCACTCGCAAACTCTTC 59.838 55.000 0.00 0.00 39.84 2.87 R
5836 5922 0.386858 CGGTACAGAGGACACACGTG 60.387 60.000 15.48 15.48 0.00 4.49 R
7271 7366 0.104304 GTCCAGGTGTCGTTGACAGT 59.896 55.000 0.00 0.00 43.57 3.55 R
7378 7473 1.449246 GCAAGGCGACTGATGAGCT 60.449 57.895 0.00 0.00 42.68 4.09 R
8241 8604 0.528684 GGAGTCACGCATACTCAGCC 60.529 60.000 12.68 0.00 44.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
168 169 2.278792 GGATTGCGGCCGAAATGC 60.279 61.111 35.99 33.59 0.00 3.56
213 214 4.142026 GGGTTACATTTTAGTCATTGGGCC 60.142 45.833 0.00 0.00 0.00 5.80
219 220 5.067283 ACATTTTAGTCATTGGGCCGTATTC 59.933 40.000 0.00 0.00 0.00 1.75
237 238 6.039270 CCGTATTCTTTTTATGCCCTGAATCA 59.961 38.462 0.00 0.00 0.00 2.57
240 241 4.331968 TCTTTTTATGCCCTGAATCACGT 58.668 39.130 0.00 0.00 0.00 4.49
241 242 4.394920 TCTTTTTATGCCCTGAATCACGTC 59.605 41.667 0.00 0.00 0.00 4.34
242 243 2.325583 TTATGCCCTGAATCACGTCC 57.674 50.000 0.00 0.00 0.00 4.79
243 244 1.199615 TATGCCCTGAATCACGTCCA 58.800 50.000 0.00 0.00 0.00 4.02
246 247 0.392998 GCCCTGAATCACGTCCACAT 60.393 55.000 0.00 0.00 0.00 3.21
247 248 1.950484 GCCCTGAATCACGTCCACATT 60.950 52.381 0.00 0.00 0.00 2.71
282 286 2.094390 CCCCATTGTTCTGCTCACATTG 60.094 50.000 0.00 0.00 0.00 2.82
298 302 3.129871 ACATTGTTGTGAATTTTGGGCG 58.870 40.909 0.00 0.00 33.85 6.13
299 303 2.969628 TTGTTGTGAATTTTGGGCGT 57.030 40.000 0.00 0.00 0.00 5.68
300 304 2.969628 TGTTGTGAATTTTGGGCGTT 57.030 40.000 0.00 0.00 0.00 4.84
301 305 2.544685 TGTTGTGAATTTTGGGCGTTG 58.455 42.857 0.00 0.00 0.00 4.10
302 306 1.864082 GTTGTGAATTTTGGGCGTTGG 59.136 47.619 0.00 0.00 0.00 3.77
303 307 0.249657 TGTGAATTTTGGGCGTTGGC 60.250 50.000 0.00 0.00 38.90 4.52
304 308 0.249657 GTGAATTTTGGGCGTTGGCA 60.250 50.000 0.00 0.00 42.47 4.92
305 309 0.033228 TGAATTTTGGGCGTTGGCAG 59.967 50.000 0.00 0.00 42.47 4.85
306 310 0.033366 GAATTTTGGGCGTTGGCAGT 59.967 50.000 0.00 0.00 42.47 4.40
307 311 1.271102 GAATTTTGGGCGTTGGCAGTA 59.729 47.619 0.00 0.00 42.47 2.74
308 312 0.887933 ATTTTGGGCGTTGGCAGTAG 59.112 50.000 0.00 0.00 42.47 2.57
309 313 1.801309 TTTTGGGCGTTGGCAGTAGC 61.801 55.000 2.90 2.90 42.47 3.58
310 314 2.690653 TTTGGGCGTTGGCAGTAGCT 62.691 55.000 9.96 0.00 42.47 3.32
311 315 2.359975 GGGCGTTGGCAGTAGCTT 60.360 61.111 0.00 0.00 42.47 3.74
316 320 1.207593 GTTGGCAGTAGCTTGCGTG 59.792 57.895 4.36 0.00 45.00 5.34
327 331 1.741770 CTTGCGTGGGACCACTAGC 60.742 63.158 18.48 15.30 44.16 3.42
355 359 1.661341 GATGCGAATCTGTTCCAGCT 58.339 50.000 0.00 0.00 0.00 4.24
405 410 6.109359 ACCTCTTGTATCTACTTGTGCAATC 58.891 40.000 0.00 0.00 0.00 2.67
522 531 1.817357 TGCTGAGAGTGATTGCCTTG 58.183 50.000 0.00 0.00 0.00 3.61
523 532 0.450983 GCTGAGAGTGATTGCCTTGC 59.549 55.000 0.00 0.00 0.00 4.01
524 533 1.093159 CTGAGAGTGATTGCCTTGCC 58.907 55.000 0.00 0.00 0.00 4.52
526 535 0.391661 GAGAGTGATTGCCTTGCCGA 60.392 55.000 0.00 0.00 0.00 5.54
527 536 0.036732 AGAGTGATTGCCTTGCCGAA 59.963 50.000 0.00 0.00 0.00 4.30
528 537 1.098050 GAGTGATTGCCTTGCCGAAT 58.902 50.000 0.00 0.00 0.00 3.34
529 538 1.474077 GAGTGATTGCCTTGCCGAATT 59.526 47.619 0.00 0.00 0.00 2.17
530 539 1.474077 AGTGATTGCCTTGCCGAATTC 59.526 47.619 0.00 0.00 0.00 2.17
531 540 0.451383 TGATTGCCTTGCCGAATTCG 59.549 50.000 20.92 20.92 39.44 3.34
532 541 0.451783 GATTGCCTTGCCGAATTCGT 59.548 50.000 25.10 4.33 37.74 3.85
533 542 0.887933 ATTGCCTTGCCGAATTCGTT 59.112 45.000 25.10 0.00 37.74 3.85
534 543 0.039617 TTGCCTTGCCGAATTCGTTG 60.040 50.000 25.10 12.80 37.74 4.10
535 544 1.169661 TGCCTTGCCGAATTCGTTGT 61.170 50.000 25.10 0.00 37.74 3.32
536 545 0.039527 GCCTTGCCGAATTCGTTGTT 60.040 50.000 25.10 0.00 37.74 2.83
537 546 1.601914 GCCTTGCCGAATTCGTTGTTT 60.602 47.619 25.10 0.00 37.74 2.83
538 547 2.315901 CCTTGCCGAATTCGTTGTTTC 58.684 47.619 25.10 8.39 37.74 2.78
539 548 2.315901 CTTGCCGAATTCGTTGTTTCC 58.684 47.619 25.10 6.20 37.74 3.13
540 549 1.600023 TGCCGAATTCGTTGTTTCCT 58.400 45.000 25.10 0.00 37.74 3.36
562 571 9.916360 TTCCTAGTCTATGTTAGAGTTATGTCA 57.084 33.333 0.00 0.00 39.18 3.58
624 648 6.708054 GGTCCTACCACTATCTTGATTGAATG 59.292 42.308 0.00 0.00 38.42 2.67
643 671 8.899427 TTGAATGATGTTATTTGAAGGCAAAA 57.101 26.923 0.00 0.00 46.19 2.44
709 738 1.683385 CTCAGATGGCATGTCGGTAGA 59.317 52.381 3.81 0.00 0.00 2.59
762 791 5.125356 TGTCAGGCATATTTGGAGTATGTG 58.875 41.667 0.00 0.00 33.19 3.21
798 827 8.687242 TCCTATAGTTTATCTCTTCCATATGCG 58.313 37.037 0.00 0.00 0.00 4.73
801 830 5.918608 AGTTTATCTCTTCCATATGCGTGT 58.081 37.500 0.00 0.00 0.00 4.49
830 859 8.579863 AGTGTAAAAATGGGAAGAAATGAAGAG 58.420 33.333 0.00 0.00 0.00 2.85
844 873 6.661377 AGAAATGAAGAGTCTAGCTGTAGTGA 59.339 38.462 0.00 0.00 0.00 3.41
856 885 5.618056 AGCTGTAGTGATGTGTTTGAATG 57.382 39.130 0.00 0.00 0.00 2.67
905 934 3.346426 CCTTGCTACAGGGTTTGCT 57.654 52.632 0.00 0.00 0.00 3.91
977 1006 3.689649 GTGTTGGAGTGAACTCAGTTTGT 59.310 43.478 12.32 0.00 44.60 2.83
1083 1112 1.482593 CAGCTAGGTGGAGTGGGTAAG 59.517 57.143 14.29 0.00 0.00 2.34
1097 1126 4.286032 AGTGGGTAAGCTGATGTGTAAGAA 59.714 41.667 0.00 0.00 0.00 2.52
1157 1186 2.123589 TCCAAGTTCAAGTCCACCTGA 58.876 47.619 0.00 0.00 0.00 3.86
1190 1219 7.608308 TTTGGTTCATTTCTTGTTTTTCAGG 57.392 32.000 0.00 0.00 0.00 3.86
1299 1329 7.582667 TGCTGTATAGTATGAGCACTTTCTA 57.417 36.000 12.41 0.00 36.54 2.10
1372 1439 1.147473 TGCAACTCACGTGTATGCAG 58.853 50.000 28.35 17.13 41.67 4.41
1373 1440 1.148310 GCAACTCACGTGTATGCAGT 58.852 50.000 26.19 16.37 37.00 4.40
1374 1441 1.531149 GCAACTCACGTGTATGCAGTT 59.469 47.619 26.19 20.17 37.00 3.16
1375 1442 2.734606 GCAACTCACGTGTATGCAGTTA 59.265 45.455 26.19 3.49 37.00 2.24
1376 1443 3.370978 GCAACTCACGTGTATGCAGTTAT 59.629 43.478 26.19 5.69 37.00 1.89
1377 1444 4.724885 GCAACTCACGTGTATGCAGTTATG 60.725 45.833 26.19 15.46 37.00 1.90
1736 1803 5.123344 ACTTTTGTTTTGCTCTCGTAGTGTT 59.877 36.000 0.00 0.00 0.00 3.32
1761 1829 2.092212 TGGAATGGCCTTCTCATCTTCC 60.092 50.000 3.32 0.00 37.63 3.46
2181 2257 6.695429 TGCATATGCCAAAAGAATAAACACA 58.305 32.000 24.54 0.00 41.18 3.72
2239 2315 6.553953 TGGTAAATCTTGTGCCTATGACTA 57.446 37.500 0.00 0.00 0.00 2.59
2241 2317 7.217200 TGGTAAATCTTGTGCCTATGACTATC 58.783 38.462 0.00 0.00 0.00 2.08
2242 2318 7.147567 TGGTAAATCTTGTGCCTATGACTATCA 60.148 37.037 0.00 0.00 0.00 2.15
2243 2319 7.880195 GGTAAATCTTGTGCCTATGACTATCAT 59.120 37.037 0.00 0.00 40.72 2.45
2357 2437 0.452987 GACAGCGTACGGTATGTCCA 59.547 55.000 20.88 0.00 36.83 4.02
2800 2880 4.757149 GTGTGGTACTTTCTGCTGATCTTT 59.243 41.667 0.00 0.00 0.00 2.52
3026 3106 5.240623 CCTTGTTGATTGTACTACAGCCAAA 59.759 40.000 0.00 0.00 0.00 3.28
3071 3151 3.019564 GGGAGTCATGAAAGACAATGGG 58.980 50.000 0.00 0.00 40.98 4.00
3072 3152 3.019564 GGAGTCATGAAAGACAATGGGG 58.980 50.000 0.00 0.00 40.98 4.96
3075 3155 4.939255 AGTCATGAAAGACAATGGGGAAT 58.061 39.130 0.00 0.00 40.98 3.01
3076 3156 5.336102 AGTCATGAAAGACAATGGGGAATT 58.664 37.500 0.00 0.00 40.98 2.17
3077 3157 5.781818 AGTCATGAAAGACAATGGGGAATTT 59.218 36.000 0.00 0.00 40.98 1.82
3078 3158 6.270695 AGTCATGAAAGACAATGGGGAATTTT 59.729 34.615 0.00 0.00 40.98 1.82
3190 3270 9.458374 CCTTTTTATTTTACTTGTCACATCGTT 57.542 29.630 0.00 0.00 0.00 3.85
3251 3332 0.471617 ACTTGCCAGCTCTGTTCAGT 59.528 50.000 0.00 0.00 0.00 3.41
3259 3340 4.380531 CCAGCTCTGTTCAGTTACTTTCA 58.619 43.478 0.00 0.00 0.00 2.69
3499 3580 9.726438 ATCAAAGATAAATATTTACTCCCTCCG 57.274 33.333 10.07 2.27 0.00 4.63
3500 3581 8.711170 TCAAAGATAAATATTTACTCCCTCCGT 58.289 33.333 10.07 0.00 0.00 4.69
3501 3582 8.989980 CAAAGATAAATATTTACTCCCTCCGTC 58.010 37.037 10.07 1.56 0.00 4.79
3502 3583 7.242322 AGATAAATATTTACTCCCTCCGTCC 57.758 40.000 10.07 0.00 0.00 4.79
3503 3584 4.332428 AAATATTTACTCCCTCCGTCCG 57.668 45.455 0.00 0.00 0.00 4.79
3504 3585 2.734755 TATTTACTCCCTCCGTCCGA 57.265 50.000 0.00 0.00 0.00 4.55
3505 3586 1.856629 ATTTACTCCCTCCGTCCGAA 58.143 50.000 0.00 0.00 0.00 4.30
3506 3587 1.631405 TTTACTCCCTCCGTCCGAAA 58.369 50.000 0.00 0.00 0.00 3.46
3507 3588 1.631405 TTACTCCCTCCGTCCGAAAA 58.369 50.000 0.00 0.00 0.00 2.29
3508 3589 1.631405 TACTCCCTCCGTCCGAAAAA 58.369 50.000 0.00 0.00 0.00 1.94
3509 3590 0.320697 ACTCCCTCCGTCCGAAAAAG 59.679 55.000 0.00 0.00 0.00 2.27
3510 3591 1.004200 TCCCTCCGTCCGAAAAAGC 60.004 57.895 0.00 0.00 0.00 3.51
3511 3592 1.003718 CCCTCCGTCCGAAAAAGCT 60.004 57.895 0.00 0.00 0.00 3.74
3512 3593 0.605589 CCCTCCGTCCGAAAAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
3513 3594 0.517316 CCTCCGTCCGAAAAAGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
3514 3595 1.226746 CTCCGTCCGAAAAAGCTTGT 58.773 50.000 0.00 0.00 0.00 3.16
3515 3596 1.194772 CTCCGTCCGAAAAAGCTTGTC 59.805 52.381 0.00 0.00 0.00 3.18
3516 3597 0.237498 CCGTCCGAAAAAGCTTGTCC 59.763 55.000 0.00 0.00 0.00 4.02
3517 3598 0.237498 CGTCCGAAAAAGCTTGTCCC 59.763 55.000 0.00 0.00 0.00 4.46
3518 3599 1.605753 GTCCGAAAAAGCTTGTCCCT 58.394 50.000 0.00 0.00 0.00 4.20
3519 3600 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
3520 3601 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
3521 3602 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
3522 3603 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
3523 3604 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
3524 3605 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
3525 3606 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
3526 3607 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3527 3608 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3528 3609 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3529 3610 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3530 3611 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3531 3612 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3532 3613 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3533 3614 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3534 3615 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3535 3616 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
3536 3617 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
3537 3618 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
3538 3619 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
3539 3620 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
3540 3621 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
3541 3622 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
3542 3623 6.057533 TCAAATGGATGTATCTAGCACCAAG 58.942 40.000 0.00 0.00 0.00 3.61
3543 3624 5.636903 AATGGATGTATCTAGCACCAAGT 57.363 39.130 0.00 0.00 0.00 3.16
3544 3625 5.636903 ATGGATGTATCTAGCACCAAGTT 57.363 39.130 0.00 0.00 0.00 2.66
3545 3626 6.747414 ATGGATGTATCTAGCACCAAGTTA 57.253 37.500 0.00 0.00 0.00 2.24
3546 3627 6.161855 TGGATGTATCTAGCACCAAGTTAG 57.838 41.667 0.00 0.00 32.79 2.34
3547 3628 5.661312 TGGATGTATCTAGCACCAAGTTAGT 59.339 40.000 0.00 0.00 33.25 2.24
3548 3629 5.986135 GGATGTATCTAGCACCAAGTTAGTG 59.014 44.000 0.00 0.00 38.30 2.74
3549 3630 6.183360 GGATGTATCTAGCACCAAGTTAGTGA 60.183 42.308 5.56 0.00 37.42 3.41
3550 3631 6.791867 TGTATCTAGCACCAAGTTAGTGAT 57.208 37.500 5.56 1.20 37.42 3.06
3551 3632 7.891498 TGTATCTAGCACCAAGTTAGTGATA 57.109 36.000 5.56 2.44 37.42 2.15
3557 3638 6.791867 AGCACCAAGTTAGTGATAGATACA 57.208 37.500 5.56 0.00 37.42 2.29
3558 3639 7.366847 AGCACCAAGTTAGTGATAGATACAT 57.633 36.000 5.56 0.00 37.42 2.29
3559 3640 7.437748 AGCACCAAGTTAGTGATAGATACATC 58.562 38.462 5.56 0.00 37.42 3.06
3560 3641 6.647067 GCACCAAGTTAGTGATAGATACATCC 59.353 42.308 5.56 0.00 37.42 3.51
3561 3642 7.686859 GCACCAAGTTAGTGATAGATACATCCA 60.687 40.741 5.56 0.00 37.42 3.41
3562 3643 8.370940 CACCAAGTTAGTGATAGATACATCCAT 58.629 37.037 0.00 0.00 37.42 3.41
3563 3644 8.938883 ACCAAGTTAGTGATAGATACATCCATT 58.061 33.333 0.00 0.00 0.00 3.16
3564 3645 9.784531 CCAAGTTAGTGATAGATACATCCATTT 57.215 33.333 0.00 0.00 0.00 2.32
3568 3649 9.429359 GTTAGTGATAGATACATCCATTTGAGG 57.571 37.037 0.00 0.00 0.00 3.86
3569 3650 7.013823 AGTGATAGATACATCCATTTGAGGG 57.986 40.000 0.00 0.00 0.00 4.30
3570 3651 6.789457 AGTGATAGATACATCCATTTGAGGGA 59.211 38.462 0.00 0.00 39.14 4.20
3571 3652 6.876257 GTGATAGATACATCCATTTGAGGGAC 59.124 42.308 0.00 0.00 37.23 4.46
3572 3653 6.558394 TGATAGATACATCCATTTGAGGGACA 59.442 38.462 0.00 0.00 37.23 4.02
3573 3654 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3574 3655 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3575 3656 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3576 3657 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3577 3658 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3578 3659 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3579 3660 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3580 3661 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
3581 3662 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
3582 3663 1.604604 TTGAGGGACAAGCTTTTCCG 58.395 50.000 22.30 2.85 34.20 4.30
3583 3664 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
3584 3665 0.036306 GAGGGACAAGCTTTTCCGGA 59.964 55.000 22.30 0.00 32.00 5.14
3585 3666 0.250770 AGGGACAAGCTTTTCCGGAC 60.251 55.000 22.30 11.02 32.00 4.79
3586 3667 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
3587 3668 1.574702 GGACAAGCTTTTCCGGACGG 61.575 60.000 15.65 3.96 0.00 4.79
3588 3669 0.601841 GACAAGCTTTTCCGGACGGA 60.602 55.000 1.83 9.76 43.52 4.69
3589 3670 0.602905 ACAAGCTTTTCCGGACGGAG 60.603 55.000 13.64 3.27 46.06 4.63
3590 3671 1.003718 AAGCTTTTCCGGACGGAGG 60.004 57.895 13.64 9.30 46.06 4.30
3591 3672 2.436115 GCTTTTCCGGACGGAGGG 60.436 66.667 13.64 8.97 46.06 4.30
3592 3673 2.951101 GCTTTTCCGGACGGAGGGA 61.951 63.158 13.64 1.83 46.06 4.20
3593 3674 1.218316 CTTTTCCGGACGGAGGGAG 59.782 63.158 13.64 9.15 46.06 4.30
3594 3675 1.534717 TTTTCCGGACGGAGGGAGT 60.535 57.895 13.64 0.00 46.06 3.85
3595 3676 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
3596 3677 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
3597 3678 2.518825 CCGGACGGAGGGAGTAGG 60.519 72.222 4.40 0.00 37.50 3.18
3603 3684 0.323542 ACGGAGGGAGTAGGACACAG 60.324 60.000 0.00 0.00 0.00 3.66
3665 3746 3.157087 CCCTCAGTAGGCAATTTGTTGT 58.843 45.455 0.00 0.00 42.14 3.32
3732 3813 6.584563 GCTTTAAAGGCAATTATTTCACGACA 59.415 34.615 16.78 0.00 0.00 4.35
3833 3917 5.587388 ACCATTGGCATCTTCTTGTTATG 57.413 39.130 1.54 0.00 0.00 1.90
3870 3954 4.848562 AAAAGGTTGGTAAGCACTAAGC 57.151 40.909 0.00 0.00 42.17 3.09
3907 3991 6.618287 TGCACATTCATTAGTTACCTATGC 57.382 37.500 0.00 0.00 0.00 3.14
3947 4033 7.494952 ACTTAATCTTTGTAGGTATCGAAAGGC 59.505 37.037 0.00 0.00 0.00 4.35
3960 4046 1.444119 GAAAGGCGTCCAACAGTGCA 61.444 55.000 0.00 0.00 0.00 4.57
4065 4151 7.216973 AGTAGAGTTAGTACAGGTTCAGTTG 57.783 40.000 0.00 0.00 0.00 3.16
4123 4209 0.399091 TCAGATGGGGGAGTAGCTGG 60.399 60.000 0.00 0.00 31.59 4.85
4124 4210 0.399091 CAGATGGGGGAGTAGCTGGA 60.399 60.000 0.00 0.00 0.00 3.86
4125 4211 0.105246 AGATGGGGGAGTAGCTGGAG 60.105 60.000 0.00 0.00 0.00 3.86
4126 4212 0.399233 GATGGGGGAGTAGCTGGAGT 60.399 60.000 0.00 0.00 0.00 3.85
4127 4213 0.941963 ATGGGGGAGTAGCTGGAGTA 59.058 55.000 0.00 0.00 0.00 2.59
4137 4223 6.127952 GGGAGTAGCTGGAGTAGATAATAACG 60.128 46.154 0.00 0.00 0.00 3.18
4151 4237 9.810231 GTAGATAATAACGTCAGAGTTAGCTAC 57.190 37.037 13.08 13.08 39.59 3.58
4181 4267 3.562973 CAGTAAGTTCATGCAGCTATGGG 59.437 47.826 0.00 0.00 0.00 4.00
4377 4463 2.224670 TGTGGGAGTAAGCATTCGGTTT 60.225 45.455 0.00 0.00 34.01 3.27
4814 4900 2.760092 AGTGAGCTCTCTAAGAGGCTTG 59.240 50.000 16.48 0.00 42.54 4.01
4825 4911 1.254026 AGAGGCTTGCGTACTGTACA 58.746 50.000 17.35 0.00 0.00 2.90
4855 4941 1.247567 GGTGCTTGGCATACAGTTGT 58.752 50.000 0.00 0.00 41.91 3.32
4866 4952 4.034510 GGCATACAGTTGTGATAGTTGAGC 59.965 45.833 0.00 0.00 0.00 4.26
5036 5122 1.296727 GTGGCTATGACTTTACGGCC 58.703 55.000 0.00 0.00 39.93 6.13
5211 5297 2.672381 GCTCTGCTGACTTCTAAAGCTG 59.328 50.000 0.00 0.00 37.82 4.24
5258 5344 1.635817 ATGGTCGCTTAGGGCATGGT 61.636 55.000 0.00 0.00 41.91 3.55
5407 5493 1.205655 GTCACTATGCTCTGGCTGTCA 59.794 52.381 0.00 0.00 39.59 3.58
5425 5511 7.384660 TGGCTGTCATTTGCAATTTAGTTTTAG 59.615 33.333 0.00 0.00 0.00 1.85
5495 5581 3.206034 TGCAGCATGAGAAAATCAACG 57.794 42.857 0.00 0.00 42.53 4.10
5568 5654 3.187637 GTGCTGCACCAAACTTAATACGA 59.812 43.478 21.78 0.00 0.00 3.43
5627 5713 3.164268 TGATGGAAACCCACATCCTTTG 58.836 45.455 0.00 0.00 42.09 2.77
5660 5746 5.468072 AGCAACTGATAGAGAAAACACAGTG 59.532 40.000 0.00 0.00 38.35 3.66
5688 5774 0.386226 GCGAGTGCGTCTATCTAGGC 60.386 60.000 0.00 0.00 40.36 3.93
5759 5845 1.087501 GCCGGTTTCCTCTTCATCAC 58.912 55.000 1.90 0.00 0.00 3.06
5761 5847 2.876079 GCCGGTTTCCTCTTCATCACTT 60.876 50.000 1.90 0.00 0.00 3.16
5762 5848 2.744202 CCGGTTTCCTCTTCATCACTTG 59.256 50.000 0.00 0.00 0.00 3.16
5780 5866 1.627864 TGGGAAACTTAAGCCTTGGC 58.372 50.000 1.29 2.97 0.00 4.52
5832 5918 0.454600 GTGCATTCCTACCTCGACGA 59.545 55.000 0.00 0.00 0.00 4.20
5834 5920 0.739561 GCATTCCTACCTCGACGACT 59.260 55.000 0.00 0.00 0.00 4.18
5836 5922 2.795331 GCATTCCTACCTCGACGACTTC 60.795 54.545 0.00 0.00 0.00 3.01
5839 5925 0.096628 CCTACCTCGACGACTTCACG 59.903 60.000 0.00 0.00 39.31 4.35
5841 5927 0.514255 TACCTCGACGACTTCACGTG 59.486 55.000 9.94 9.94 46.52 4.49
5848 5934 0.030369 ACGACTTCACGTGTGTCCTC 59.970 55.000 25.98 12.32 44.84 3.71
5851 5937 1.067212 GACTTCACGTGTGTCCTCTGT 59.933 52.381 23.60 10.79 0.00 3.41
5852 5938 2.292569 GACTTCACGTGTGTCCTCTGTA 59.707 50.000 23.60 0.00 0.00 2.74
5866 5952 2.233922 CCTCTGTACCGATTTCACCACT 59.766 50.000 0.00 0.00 0.00 4.00
5878 5964 7.093201 ACCGATTTCACCACTTCCTACTAATAA 60.093 37.037 0.00 0.00 0.00 1.40
5879 5965 7.438459 CCGATTTCACCACTTCCTACTAATAAG 59.562 40.741 0.00 0.00 0.00 1.73
5983 6069 3.081061 TGCAATCACAGGTAACCATCAC 58.919 45.455 0.00 0.00 37.17 3.06
6025 6112 7.148689 GCAATTTCATCAAGATTCCAAGTGTTC 60.149 37.037 0.00 0.00 0.00 3.18
6030 6117 4.899502 TCAAGATTCCAAGTGTTCTCCTC 58.100 43.478 0.00 0.00 0.00 3.71
6055 6142 6.535508 CCGATCCTCGTTTCTTCTAAAGATTT 59.464 38.462 0.00 0.00 38.40 2.17
6097 6184 6.098679 CAGTTCTCTAGGCAGCATATATGAC 58.901 44.000 17.10 7.84 0.00 3.06
6098 6185 6.015918 AGTTCTCTAGGCAGCATATATGACT 58.984 40.000 17.10 9.94 39.97 3.41
6107 6194 7.102346 AGGCAGCATATATGACTATTCAGAAC 58.898 38.462 17.10 0.00 32.99 3.01
6141 6228 5.652014 TGATTTCTAATCGTTTGCTTGGGAT 59.348 36.000 0.00 0.00 0.00 3.85
6218 6305 2.364324 TCACACAGTGACCTAACCTGAC 59.636 50.000 7.81 0.00 37.67 3.51
6220 6307 1.691976 CACAGTGACCTAACCTGACCA 59.308 52.381 0.00 0.00 0.00 4.02
6487 6574 0.179103 GCATTGGGCCAGTGCATTAC 60.179 55.000 39.20 16.71 44.57 1.89
6525 6612 3.878086 ATCCGCTTGTATACATTTGCG 57.122 42.857 26.86 26.86 38.84 4.85
6576 6663 4.497966 GCTGACGTACTGAAAACAAAAACC 59.502 41.667 0.00 0.00 0.00 3.27
6599 6686 3.320673 GGAGACCAGAGAACGTTGAAT 57.679 47.619 5.00 0.00 0.00 2.57
6698 6785 3.072330 TGAGAAGTGGAAGCACATGGTAA 59.928 43.478 0.00 0.00 0.00 2.85
6700 6787 4.012374 AGAAGTGGAAGCACATGGTAATG 58.988 43.478 0.00 0.00 39.89 1.90
6701 6788 2.726821 AGTGGAAGCACATGGTAATGG 58.273 47.619 0.00 0.00 38.19 3.16
6703 6790 3.265737 AGTGGAAGCACATGGTAATGGTA 59.734 43.478 0.00 0.00 38.19 3.25
6706 6793 5.825679 GTGGAAGCACATGGTAATGGTATTA 59.174 40.000 0.00 0.00 38.19 0.98
6707 6794 5.825679 TGGAAGCACATGGTAATGGTATTAC 59.174 40.000 0.00 3.67 38.19 1.89
6708 6795 6.062095 GGAAGCACATGGTAATGGTATTACT 58.938 40.000 10.49 0.00 38.19 2.24
6710 6797 7.883311 GGAAGCACATGGTAATGGTATTACTAT 59.117 37.037 10.49 7.84 38.19 2.12
6711 6798 9.284968 GAAGCACATGGTAATGGTATTACTATT 57.715 33.333 9.91 9.91 38.19 1.73
6712 6799 8.848474 AGCACATGGTAATGGTATTACTATTC 57.152 34.615 8.50 2.50 38.19 1.75
6713 6800 7.883311 AGCACATGGTAATGGTATTACTATTCC 59.117 37.037 8.50 10.14 38.19 3.01
6714 6801 7.120726 GCACATGGTAATGGTATTACTATTCCC 59.879 40.741 8.50 7.88 38.19 3.97
6715 6802 8.160765 CACATGGTAATGGTATTACTATTCCCA 58.839 37.037 16.10 16.10 38.87 4.37
6716 6803 8.383175 ACATGGTAATGGTATTACTATTCCCAG 58.617 37.037 17.87 13.46 38.17 4.45
6746 6833 4.572389 CAGATGGCGTCACTATAAGCTTTT 59.428 41.667 3.20 0.00 0.00 2.27
6764 6852 4.498682 GCTTTTGCCTATGAATCGATGCTT 60.499 41.667 4.68 0.44 40.15 3.91
6769 6857 8.565896 TTTGCCTATGAATCGATGCTTATAAT 57.434 30.769 4.68 0.00 0.00 1.28
6794 6882 8.948853 TCTTAAATTCAGCTAATTTTGTGTCG 57.051 30.769 14.76 0.00 43.75 4.35
6795 6883 7.537306 TCTTAAATTCAGCTAATTTTGTGTCGC 59.463 33.333 14.76 0.00 43.75 5.19
6796 6884 5.376854 AATTCAGCTAATTTTGTGTCGCT 57.623 34.783 0.00 0.00 33.91 4.93
6797 6885 3.811722 TCAGCTAATTTTGTGTCGCTG 57.188 42.857 0.00 0.00 44.45 5.18
6798 6886 3.138304 TCAGCTAATTTTGTGTCGCTGT 58.862 40.909 8.65 0.00 43.75 4.40
6799 6887 3.563808 TCAGCTAATTTTGTGTCGCTGTT 59.436 39.130 8.65 0.00 43.75 3.16
6800 6888 3.665409 CAGCTAATTTTGTGTCGCTGTTG 59.335 43.478 0.00 0.00 39.81 3.33
6801 6889 2.405025 GCTAATTTTGTGTCGCTGTTGC 59.595 45.455 0.00 0.00 0.00 4.17
6857 6947 4.610714 GGCCGCCCTCTCCGATTC 62.611 72.222 0.00 0.00 0.00 2.52
6866 6956 4.316645 GCCCTCTCCGATTCCTATTAAAC 58.683 47.826 0.00 0.00 0.00 2.01
6867 6957 4.202326 GCCCTCTCCGATTCCTATTAAACA 60.202 45.833 0.00 0.00 0.00 2.83
6870 6960 6.998673 CCCTCTCCGATTCCTATTAAACAAAT 59.001 38.462 0.00 0.00 0.00 2.32
6881 6972 8.208718 TCCTATTAAACAAATCATCTGGTTCG 57.791 34.615 0.00 0.00 0.00 3.95
6889 6980 2.689553 TCATCTGGTTCGCAAGCATA 57.310 45.000 2.12 0.00 38.36 3.14
6893 6984 0.729116 CTGGTTCGCAAGCATACCTG 59.271 55.000 12.08 8.76 38.36 4.00
6904 6995 1.633432 AGCATACCTGGGCACTACAAA 59.367 47.619 0.00 0.00 0.00 2.83
6911 7002 5.129368 ACCTGGGCACTACAAATATCAAT 57.871 39.130 0.00 0.00 0.00 2.57
6959 7051 7.139392 TGACTAGAACATATAAACTAGCAGCG 58.861 38.462 0.00 0.00 36.71 5.18
6970 7062 9.765795 ATATAAACTAGCAGCGAAAGTAGAAAT 57.234 29.630 0.00 0.00 0.00 2.17
6971 7063 6.410243 AAACTAGCAGCGAAAGTAGAAATC 57.590 37.500 0.00 0.00 0.00 2.17
6984 7077 5.167303 AGTAGAAATCACCCAAACCTCTC 57.833 43.478 0.00 0.00 0.00 3.20
7003 7096 4.293494 TCTCATCAGAGGCAGGTTAGATT 58.707 43.478 0.00 0.00 42.34 2.40
7014 7107 4.443621 GCAGGTTAGATTAACAGGTCTCC 58.556 47.826 1.88 0.00 40.39 3.71
7074 7169 2.568509 CAAAAGGAACCAAGGCATCCAT 59.431 45.455 12.47 0.09 35.62 3.41
7108 7203 5.406780 CCTCAAGTAGAACTAACAGCAACAG 59.593 44.000 0.00 0.00 0.00 3.16
7126 7221 1.275291 CAGGGTTTCGCAGAGGAGTTA 59.725 52.381 0.00 0.00 38.43 2.24
7127 7222 1.975680 AGGGTTTCGCAGAGGAGTTAA 59.024 47.619 0.00 0.00 38.43 2.01
7178 7273 2.682563 GCCAACCCTGTTCCAATCGATA 60.683 50.000 0.00 0.00 0.00 2.92
7183 7278 6.072508 CCAACCCTGTTCCAATCGATATAATG 60.073 42.308 0.00 0.00 0.00 1.90
7213 7308 7.144661 TCATGGTTACTTCGTCGTTTAACTTA 58.855 34.615 0.00 4.65 0.00 2.24
7246 7341 4.176271 TGCGTTGTCAGATCAGAAGTATG 58.824 43.478 0.00 0.00 0.00 2.39
7268 7363 1.801178 CCGAAAGAACACCTGAAGAGC 59.199 52.381 0.00 0.00 0.00 4.09
7271 7366 3.650139 GAAAGAACACCTGAAGAGCGTA 58.350 45.455 0.00 0.00 0.00 4.42
7376 7471 2.270205 CTGATTCCAGCGCCCACT 59.730 61.111 2.29 0.00 33.07 4.00
7378 7473 0.107703 CTGATTCCAGCGCCCACTTA 60.108 55.000 2.29 0.00 33.07 2.24
7413 7508 2.427232 TGCAAAGAGAACAGCATTGC 57.573 45.000 0.00 0.00 44.93 3.56
7422 7517 2.202440 CAGCATTGCAGCAGACGC 60.202 61.111 11.91 0.00 36.85 5.19
7462 7557 5.880332 GGTTGAACATGGTGTATACATCACT 59.120 40.000 20.89 8.75 40.17 3.41
7501 7596 2.143925 GGTCATAAATACCTCAGGCGC 58.856 52.381 0.00 0.00 33.97 6.53
7523 7618 4.321452 GCGTCCGTTTCAGGTATGGATATA 60.321 45.833 0.00 0.00 33.46 0.86
7524 7619 5.623824 GCGTCCGTTTCAGGTATGGATATAT 60.624 44.000 0.00 0.00 33.46 0.86
7604 7700 2.079925 GATCGCTTCTTTTGCTCACCT 58.920 47.619 0.00 0.00 0.00 4.00
7630 7726 1.813513 AGAGGCATTTCACGGAACAG 58.186 50.000 0.00 0.00 0.00 3.16
7823 7921 2.890945 TGTCTGGTCTCTGTTCATCGAA 59.109 45.455 0.00 0.00 0.00 3.71
7824 7922 3.320826 TGTCTGGTCTCTGTTCATCGAAA 59.679 43.478 0.00 0.00 0.00 3.46
7825 7923 4.202212 TGTCTGGTCTCTGTTCATCGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
7826 7924 4.750098 GTCTGGTCTCTGTTCATCGAAAAA 59.250 41.667 0.00 0.00 0.00 1.94
7991 8091 9.798994 CTCTGTACGACATAAATAGTTTTAGGT 57.201 33.333 0.00 0.00 43.05 3.08
8047 8147 2.823747 ACTCATGTACGTAGTTGGCTGA 59.176 45.455 0.00 0.00 37.78 4.26
8078 8179 5.759763 CCATGTGAAATACTCGAATGGATCA 59.240 40.000 1.51 0.00 40.03 2.92
8139 8502 4.935205 GGTTGAAAAATAGTGGGAAATGGC 59.065 41.667 0.00 0.00 0.00 4.40
8217 8580 6.365247 GCAATTCAATATTGCCTGTCATGATC 59.635 38.462 10.76 0.00 46.21 2.92
8241 8604 7.331026 TCTGTTCAGGTAATGGTGAGATTTAG 58.669 38.462 0.00 0.00 0.00 1.85
8244 8607 4.721776 TCAGGTAATGGTGAGATTTAGGCT 59.278 41.667 0.00 0.00 0.00 4.58
8273 8636 2.675844 CGTGACTCCACTGTTTTTGTGA 59.324 45.455 0.00 0.00 41.06 3.58
8279 8642 5.360591 ACTCCACTGTTTTTGTGACTAGAG 58.639 41.667 0.00 0.00 37.60 2.43
8419 8782 1.608025 CGTGTGTGGCTACCAACTCAT 60.608 52.381 0.00 0.00 34.18 2.90
8420 8783 1.806542 GTGTGTGGCTACCAACTCATG 59.193 52.381 0.00 0.00 34.18 3.07
8440 8803 1.747206 GCCCCGTTGCATCATACTTCT 60.747 52.381 0.00 0.00 0.00 2.85
8447 8810 5.382303 CGTTGCATCATACTTCTTTCGTTT 58.618 37.500 0.00 0.00 0.00 3.60
8450 8813 6.169419 TGCATCATACTTCTTTCGTTTCAG 57.831 37.500 0.00 0.00 0.00 3.02
8517 8882 8.466798 TGGTCAAGTTTTTAGAAGGAAAAAGAG 58.533 33.333 0.00 0.00 38.59 2.85
8569 8934 9.208022 TGTATCATTAGATCCGTCATGAAAATC 57.792 33.333 0.00 0.97 35.67 2.17
8660 9025 9.934190 ATAAACAAATTTGACTTGCATGAAAAC 57.066 25.926 24.64 0.00 0.00 2.43
8676 9041 6.860023 GCATGAAAACAGATGCACCTTATATC 59.140 38.462 0.00 0.00 43.75 1.63
8677 9042 7.469043 GCATGAAAACAGATGCACCTTATATCA 60.469 37.037 0.00 0.00 43.75 2.15
8684 9049 6.713903 ACAGATGCACCTTATATCATGGAAAG 59.286 38.462 0.00 0.00 0.00 2.62
8685 9050 6.150641 CAGATGCACCTTATATCATGGAAAGG 59.849 42.308 12.07 12.07 43.42 3.11
8686 9051 4.144297 TGCACCTTATATCATGGAAAGGC 58.856 43.478 13.04 0.00 41.87 4.35
8687 9052 3.507622 GCACCTTATATCATGGAAAGGCC 59.492 47.826 0.00 0.00 41.87 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 0.676736 GGATTACCTCAGAGCTCGGG 59.323 60.000 14.13 16.16 0.00 5.14
149 150 1.510383 CATTTCGGCCGCAATCCAA 59.490 52.632 20.42 5.22 0.00 3.53
168 169 1.577328 AAACCGCTCCAGCACGAATG 61.577 55.000 0.00 0.00 42.21 2.67
213 214 6.912591 GTGATTCAGGGCATAAAAAGAATACG 59.087 38.462 0.00 0.00 0.00 3.06
219 220 4.438744 GGACGTGATTCAGGGCATAAAAAG 60.439 45.833 13.83 0.00 0.00 2.27
282 286 1.864082 CCAACGCCCAAAATTCACAAC 59.136 47.619 0.00 0.00 0.00 3.32
294 298 2.359975 AAGCTACTGCCAACGCCC 60.360 61.111 0.00 0.00 40.80 6.13
295 299 2.870372 CAAGCTACTGCCAACGCC 59.130 61.111 0.00 0.00 40.80 5.68
297 301 2.317609 ACGCAAGCTACTGCCAACG 61.318 57.895 4.82 0.00 45.62 4.10
298 302 1.207593 CACGCAAGCTACTGCCAAC 59.792 57.895 4.82 0.00 45.62 3.77
299 303 1.965930 CCACGCAAGCTACTGCCAA 60.966 57.895 4.82 0.00 45.62 4.52
300 304 2.358615 CCACGCAAGCTACTGCCA 60.359 61.111 4.82 0.00 45.62 4.92
301 305 3.127533 CCCACGCAAGCTACTGCC 61.128 66.667 4.82 0.00 45.62 4.85
302 306 2.047274 TCCCACGCAAGCTACTGC 60.047 61.111 0.00 0.00 45.62 4.40
303 307 1.741770 GGTCCCACGCAAGCTACTG 60.742 63.158 0.00 0.00 45.62 2.74
304 308 2.214216 TGGTCCCACGCAAGCTACT 61.214 57.895 0.00 0.00 45.62 2.57
305 309 2.033194 GTGGTCCCACGCAAGCTAC 61.033 63.158 0.00 0.00 45.62 3.58
306 310 2.345991 GTGGTCCCACGCAAGCTA 59.654 61.111 0.00 0.00 45.62 3.32
316 320 2.436115 GGCAACGCTAGTGGTCCC 60.436 66.667 8.42 0.00 0.00 4.46
327 331 1.148157 AGATTCGCATCGAGGCAACG 61.148 55.000 23.09 5.96 37.14 4.10
355 359 4.312443 GACGAATGTTCCCTGAACTAACA 58.688 43.478 8.30 0.00 42.39 2.41
502 511 2.156917 CAAGGCAATCACTCTCAGCAA 58.843 47.619 0.00 0.00 0.00 3.91
518 527 2.315901 GAAACAACGAATTCGGCAAGG 58.684 47.619 29.79 16.42 44.95 3.61
522 531 2.740447 ACTAGGAAACAACGAATTCGGC 59.260 45.455 29.79 12.32 44.95 5.54
523 532 4.243270 AGACTAGGAAACAACGAATTCGG 58.757 43.478 29.79 16.45 44.95 4.30
524 533 6.530534 ACATAGACTAGGAAACAACGAATTCG 59.469 38.462 25.64 25.64 46.33 3.34
526 535 9.367444 CTAACATAGACTAGGAAACAACGAATT 57.633 33.333 0.22 0.00 0.00 2.17
527 536 8.746530 TCTAACATAGACTAGGAAACAACGAAT 58.253 33.333 0.22 0.00 0.00 3.34
528 537 8.114331 TCTAACATAGACTAGGAAACAACGAA 57.886 34.615 0.22 0.00 0.00 3.85
529 538 7.392673 ACTCTAACATAGACTAGGAAACAACGA 59.607 37.037 0.22 0.00 0.00 3.85
530 539 7.536855 ACTCTAACATAGACTAGGAAACAACG 58.463 38.462 0.22 0.00 0.00 4.10
536 545 9.916360 TGACATAACTCTAACATAGACTAGGAA 57.084 33.333 0.22 0.00 0.00 3.36
537 546 9.562408 CTGACATAACTCTAACATAGACTAGGA 57.438 37.037 0.22 0.00 0.00 2.94
538 547 9.344772 ACTGACATAACTCTAACATAGACTAGG 57.655 37.037 0.00 0.00 0.00 3.02
597 614 5.363868 TCAATCAAGATAGTGGTAGGACCTG 59.636 44.000 3.53 0.00 39.58 4.00
624 648 8.538409 AGACATTTTTGCCTTCAAATAACATC 57.462 30.769 0.00 0.00 41.37 3.06
643 671 4.080356 TGGGAGCACAATAGCTTAGACATT 60.080 41.667 0.00 0.00 46.75 2.71
690 719 1.409064 GTCTACCGACATGCCATCTGA 59.591 52.381 0.00 0.00 39.98 3.27
709 738 7.118390 GCTTCAGATCAACTGTAAACACTATGT 59.882 37.037 0.00 0.00 45.86 2.29
798 827 6.870971 TCTTCCCATTTTTACACTACACAC 57.129 37.500 0.00 0.00 0.00 3.82
801 830 8.698973 TCATTTCTTCCCATTTTTACACTACA 57.301 30.769 0.00 0.00 0.00 2.74
830 859 5.470368 TCAAACACATCACTACAGCTAGAC 58.530 41.667 0.00 0.00 0.00 2.59
905 934 3.323403 CCTCCAAGCCAATACCACAAAAA 59.677 43.478 0.00 0.00 0.00 1.94
977 1006 3.496692 GCAATACCCAGAGTCATATGCCA 60.497 47.826 0.00 0.00 0.00 4.92
1083 1112 1.661112 GCTCGGTTCTTACACATCAGC 59.339 52.381 0.00 0.00 0.00 4.26
1189 1218 3.696548 CTGAGGAAGCTGGTATTTTTCCC 59.303 47.826 0.00 0.00 39.91 3.97
1190 1219 4.336280 ACTGAGGAAGCTGGTATTTTTCC 58.664 43.478 0.00 0.00 39.47 3.13
1372 1439 4.438200 CGGAAGTAAACATGGGTGCATAAC 60.438 45.833 0.00 0.00 0.00 1.89
1373 1440 3.692101 CGGAAGTAAACATGGGTGCATAA 59.308 43.478 0.00 0.00 0.00 1.90
1374 1441 3.275143 CGGAAGTAAACATGGGTGCATA 58.725 45.455 0.00 0.00 0.00 3.14
1375 1442 2.091541 CGGAAGTAAACATGGGTGCAT 58.908 47.619 0.00 0.00 0.00 3.96
1376 1443 1.202830 ACGGAAGTAAACATGGGTGCA 60.203 47.619 0.00 0.00 46.88 4.57
1377 1444 1.530323 ACGGAAGTAAACATGGGTGC 58.470 50.000 0.00 0.00 46.88 5.01
1589 1656 8.894768 ATAATTTACATGCTCTTGGTACTCTC 57.105 34.615 0.00 0.00 0.00 3.20
1718 1785 6.073440 TCCATTAAACACTACGAGAGCAAAAC 60.073 38.462 0.00 0.00 0.00 2.43
1736 1803 5.393068 AGATGAGAAGGCCATTCCATTAA 57.607 39.130 5.01 0.00 38.84 1.40
1761 1829 0.324943 AAGGTCCCCGTTGAGTGATG 59.675 55.000 0.00 0.00 0.00 3.07
2086 2162 4.904251 ACATTATGTATGTCTCCTCAGCCT 59.096 41.667 0.00 0.00 44.15 4.58
2429 2509 4.801330 TCCGAGTTACAGTTGATCATGT 57.199 40.909 7.12 7.12 0.00 3.21
2509 2589 5.565509 TGTCTTATATTTGGCCTTGACACA 58.434 37.500 3.32 0.00 0.00 3.72
2615 2695 9.396022 TGACTTTGACTGTTCTCTTAATTTTCT 57.604 29.630 0.00 0.00 0.00 2.52
2783 2863 5.938125 GGTTACCAAAGATCAGCAGAAAGTA 59.062 40.000 0.00 0.00 0.00 2.24
2800 2880 1.910671 ACAAGCCGGAATAGGTTACCA 59.089 47.619 5.05 0.00 0.00 3.25
3026 3106 3.149981 GTGGGAAGCAGCTTTAGAAAGT 58.850 45.455 9.62 0.00 38.28 2.66
3054 3134 5.665916 AATTCCCCATTGTCTTTCATGAC 57.334 39.130 0.00 0.00 37.47 3.06
3080 3160 8.167392 TCTGTCTTAGAACATGGGGATTTAAAA 58.833 33.333 0.00 0.00 30.84 1.52
3081 3161 7.695055 TCTGTCTTAGAACATGGGGATTTAAA 58.305 34.615 0.00 0.00 30.84 1.52
3190 3270 1.486310 AGGAGTTGACAAGTGAGCACA 59.514 47.619 0.00 0.00 0.00 4.57
3259 3340 9.803507 TCTTGCCAGATATTTCTTGATTATCAT 57.196 29.630 0.00 0.00 0.00 2.45
3491 3572 1.019805 GCTTTTTCGGACGGAGGGAG 61.020 60.000 0.00 0.00 0.00 4.30
3492 3573 1.004200 GCTTTTTCGGACGGAGGGA 60.004 57.895 0.00 0.00 0.00 4.20
3493 3574 0.605589 AAGCTTTTTCGGACGGAGGG 60.606 55.000 0.00 0.00 0.00 4.30
3494 3575 0.517316 CAAGCTTTTTCGGACGGAGG 59.483 55.000 0.00 0.00 0.00 4.30
3495 3576 1.194772 GACAAGCTTTTTCGGACGGAG 59.805 52.381 0.00 0.00 0.00 4.63
3496 3577 1.223187 GACAAGCTTTTTCGGACGGA 58.777 50.000 0.00 0.00 0.00 4.69
3497 3578 0.237498 GGACAAGCTTTTTCGGACGG 59.763 55.000 0.00 0.00 0.00 4.79
3498 3579 0.237498 GGGACAAGCTTTTTCGGACG 59.763 55.000 0.00 0.00 0.00 4.79
3499 3580 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
3500 3581 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
3501 3582 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
3502 3583 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
3503 3584 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
3504 3585 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
3505 3586 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
3506 3587 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
3507 3588 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
3508 3589 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
3509 3590 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
3510 3591 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
3511 3592 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
3512 3593 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
3513 3594 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
3514 3595 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
3515 3596 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
3516 3597 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
3517 3598 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
3518 3599 5.628797 TGGTGCTAGATACATCCATTTGA 57.371 39.130 0.00 0.00 0.00 2.69
3519 3600 5.824624 ACTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
3520 3601 6.006275 ACTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
3521 3602 5.636903 ACTTGGTGCTAGATACATCCATT 57.363 39.130 0.00 0.00 0.00 3.16
3522 3603 5.636903 AACTTGGTGCTAGATACATCCAT 57.363 39.130 0.00 0.00 0.00 3.41
3523 3604 5.661312 ACTAACTTGGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
3524 3605 5.986135 CACTAACTTGGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
3525 3606 6.806751 TCACTAACTTGGTGCTAGATACATC 58.193 40.000 0.00 0.00 34.97 3.06
3526 3607 6.791867 TCACTAACTTGGTGCTAGATACAT 57.208 37.500 0.00 0.00 34.97 2.29
3527 3608 6.791867 ATCACTAACTTGGTGCTAGATACA 57.208 37.500 0.00 0.00 34.97 2.29
3528 3609 8.167605 TCTATCACTAACTTGGTGCTAGATAC 57.832 38.462 12.39 0.00 37.44 2.24
3529 3610 8.941995 ATCTATCACTAACTTGGTGCTAGATA 57.058 34.615 21.19 6.91 44.30 1.98
3530 3611 7.847711 ATCTATCACTAACTTGGTGCTAGAT 57.152 36.000 18.71 18.71 42.50 1.98
3531 3612 7.778382 TGTATCTATCACTAACTTGGTGCTAGA 59.222 37.037 16.58 16.58 42.53 2.43
3532 3613 7.941919 TGTATCTATCACTAACTTGGTGCTAG 58.058 38.462 8.95 8.95 35.80 3.42
3533 3614 7.891498 TGTATCTATCACTAACTTGGTGCTA 57.109 36.000 0.44 0.00 34.97 3.49
3534 3615 6.791867 TGTATCTATCACTAACTTGGTGCT 57.208 37.500 0.44 0.00 34.97 4.40
3535 3616 6.647067 GGATGTATCTATCACTAACTTGGTGC 59.353 42.308 0.44 0.00 34.97 5.01
3536 3617 7.726216 TGGATGTATCTATCACTAACTTGGTG 58.274 38.462 0.00 0.00 36.17 4.17
3537 3618 7.914427 TGGATGTATCTATCACTAACTTGGT 57.086 36.000 0.00 0.00 0.00 3.67
3538 3619 9.784531 AAATGGATGTATCTATCACTAACTTGG 57.215 33.333 0.00 0.00 0.00 3.61
3542 3623 9.429359 CCTCAAATGGATGTATCTATCACTAAC 57.571 37.037 0.00 0.00 0.00 2.34
3543 3624 8.597167 CCCTCAAATGGATGTATCTATCACTAA 58.403 37.037 0.00 0.00 0.00 2.24
3544 3625 7.955750 TCCCTCAAATGGATGTATCTATCACTA 59.044 37.037 0.00 0.00 0.00 2.74
3545 3626 6.789457 TCCCTCAAATGGATGTATCTATCACT 59.211 38.462 0.00 0.00 0.00 3.41
3546 3627 6.876257 GTCCCTCAAATGGATGTATCTATCAC 59.124 42.308 0.00 0.00 33.65 3.06
3547 3628 6.558394 TGTCCCTCAAATGGATGTATCTATCA 59.442 38.462 0.00 0.00 33.65 2.15
3548 3629 7.009179 TGTCCCTCAAATGGATGTATCTATC 57.991 40.000 0.00 0.00 33.65 2.08
3549 3630 7.392766 TTGTCCCTCAAATGGATGTATCTAT 57.607 36.000 0.00 0.00 33.65 1.98
3550 3631 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
3551 3632 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
3552 3633 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
3553 3634 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
3554 3635 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
3555 3636 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
3556 3637 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
3557 3638 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
3558 3639 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
3559 3640 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
3560 3641 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
3561 3642 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
3562 3643 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
3563 3644 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
3564 3645 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
3565 3646 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
3566 3647 0.250770 GTCCGGAAAAGCTTGTCCCT 60.251 55.000 26.94 0.00 0.00 4.20
3567 3648 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
3568 3649 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
3569 3650 0.601841 TCCGTCCGGAAAAGCTTGTC 60.602 55.000 5.23 8.23 42.05 3.18
3570 3651 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
3571 3652 1.298859 CCTCCGTCCGGAAAAGCTTG 61.299 60.000 5.23 0.00 44.66 4.01
3572 3653 1.003718 CCTCCGTCCGGAAAAGCTT 60.004 57.895 5.23 0.00 44.66 3.74
3573 3654 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
3574 3655 2.436115 CCCTCCGTCCGGAAAAGC 60.436 66.667 5.23 0.00 44.66 3.51
3575 3656 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
3576 3657 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
3577 3658 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
3578 3659 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
3579 3660 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
3580 3661 2.518825 CCTACTCCCTCCGTCCGG 60.519 72.222 0.00 0.00 0.00 5.14
3581 3662 1.823041 GTCCTACTCCCTCCGTCCG 60.823 68.421 0.00 0.00 0.00 4.79
3582 3663 1.036481 GTGTCCTACTCCCTCCGTCC 61.036 65.000 0.00 0.00 0.00 4.79
3583 3664 0.323178 TGTGTCCTACTCCCTCCGTC 60.323 60.000 0.00 0.00 0.00 4.79
3584 3665 0.323542 CTGTGTCCTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
3585 3666 1.668101 GCTGTGTCCTACTCCCTCCG 61.668 65.000 0.00 0.00 0.00 4.63
3586 3667 0.324830 AGCTGTGTCCTACTCCCTCC 60.325 60.000 0.00 0.00 0.00 4.30
3587 3668 1.107945 GAGCTGTGTCCTACTCCCTC 58.892 60.000 0.00 0.00 0.00 4.30
3588 3669 0.707616 AGAGCTGTGTCCTACTCCCT 59.292 55.000 0.00 0.00 0.00 4.20
3589 3670 2.438800 TAGAGCTGTGTCCTACTCCC 57.561 55.000 0.00 0.00 0.00 4.30
3590 3671 3.954904 TCATTAGAGCTGTGTCCTACTCC 59.045 47.826 0.00 0.00 0.00 3.85
3591 3672 5.527951 CATCATTAGAGCTGTGTCCTACTC 58.472 45.833 0.00 0.00 0.00 2.59
3592 3673 4.202202 GCATCATTAGAGCTGTGTCCTACT 60.202 45.833 0.00 0.00 0.00 2.57
3593 3674 4.054671 GCATCATTAGAGCTGTGTCCTAC 58.945 47.826 0.00 0.00 0.00 3.18
3594 3675 3.963374 AGCATCATTAGAGCTGTGTCCTA 59.037 43.478 0.00 0.00 37.20 2.94
3595 3676 2.770802 AGCATCATTAGAGCTGTGTCCT 59.229 45.455 0.00 0.00 37.20 3.85
3596 3677 3.191078 AGCATCATTAGAGCTGTGTCC 57.809 47.619 0.00 0.00 37.20 4.02
3603 3684 5.762218 AGGTTCATAACAGCATCATTAGAGC 59.238 40.000 0.00 0.00 0.00 4.09
3665 3746 6.465439 TTCGTCCTTATCTTTGCAGATCTA 57.535 37.500 0.00 0.00 40.53 1.98
3732 3813 7.681939 TCTGTTGTCAACTTCTTACAGTTTT 57.318 32.000 16.45 0.00 34.60 2.43
3947 4033 1.372838 TTGTGGTGCACTGTTGGACG 61.373 55.000 17.98 0.00 44.79 4.79
3960 4046 2.679837 GACGAGCATCATGATTTGTGGT 59.320 45.455 5.16 1.43 33.17 4.16
4014 4100 4.101114 TCCTGCCCGGTGTATAATATCAT 58.899 43.478 0.00 0.00 0.00 2.45
4123 4209 8.776470 AGCTAACTCTGACGTTATTATCTACTC 58.224 37.037 0.00 0.00 0.00 2.59
4124 4210 8.680039 AGCTAACTCTGACGTTATTATCTACT 57.320 34.615 0.00 0.00 0.00 2.57
4125 4211 9.810231 GTAGCTAACTCTGACGTTATTATCTAC 57.190 37.037 0.00 0.00 0.00 2.59
4126 4212 9.775854 AGTAGCTAACTCTGACGTTATTATCTA 57.224 33.333 0.00 0.00 30.33 1.98
4127 4213 8.680039 AGTAGCTAACTCTGACGTTATTATCT 57.320 34.615 0.00 0.00 30.33 1.98
4151 4237 3.499537 TGCATGAACTTACTGCACTTGAG 59.500 43.478 0.00 0.00 40.75 3.02
4181 4267 4.707030 TGCATCAAAATCATCACCTGAC 57.293 40.909 0.00 0.00 36.48 3.51
4377 4463 9.802039 ATACATTTCTCCTTGTTTAGTAACCAA 57.198 29.630 0.00 0.00 33.15 3.67
4662 4748 3.553096 GGTCCACATGATACCGATGAGAC 60.553 52.174 0.00 0.00 32.04 3.36
4814 4900 1.061131 CAAGCTGCATGTACAGTACGC 59.939 52.381 0.33 5.09 39.96 4.42
4825 4911 1.663739 CAAGCACCACAAGCTGCAT 59.336 52.632 1.02 0.00 42.53 3.96
4966 5052 1.379044 GATTCCACACAGGCTGGGG 60.379 63.158 22.78 17.67 46.50 4.96
5036 5122 1.856265 GCCCAGAAGTTGACAAGGCG 61.856 60.000 0.00 0.00 0.00 5.52
5211 5297 3.288092 CCTTGCCCCAAGTATAAACTCC 58.712 50.000 4.48 0.00 39.58 3.85
5246 5332 8.023128 CGATCAAAATTATTACCATGCCCTAAG 58.977 37.037 0.00 0.00 0.00 2.18
5425 5511 9.384764 AGTTATAACAGTTATGCCTCTTTCTTC 57.615 33.333 17.65 0.00 0.00 2.87
5495 5581 3.733443 TTTGGAGCCAAAGAAGCTTTC 57.267 42.857 10.49 0.00 41.75 2.62
5627 5713 4.081972 TCTCTATCAGTTGCTTCACTGGAC 60.082 45.833 10.25 0.00 43.92 4.02
5660 5746 0.161870 GACGCACTCGCAAACTCTTC 59.838 55.000 0.00 0.00 39.84 2.87
5688 5774 5.579511 GCTTGAATGATTCCATGGTCAAAAG 59.420 40.000 12.58 14.16 32.33 2.27
5759 5845 2.029020 GCCAAGGCTTAAGTTTCCCAAG 60.029 50.000 0.00 0.00 38.26 3.61
5761 5847 1.133325 TGCCAAGGCTTAAGTTTCCCA 60.133 47.619 12.96 0.00 42.51 4.37
5762 5848 1.546029 CTGCCAAGGCTTAAGTTTCCC 59.454 52.381 12.96 0.00 42.51 3.97
5780 5866 3.392616 ACTCCTTGGAATGGCCTATACTG 59.607 47.826 3.32 0.00 37.63 2.74
5832 5918 1.112113 ACAGAGGACACACGTGAAGT 58.888 50.000 25.01 19.75 0.00 3.01
5834 5920 1.338973 GGTACAGAGGACACACGTGAA 59.661 52.381 25.01 0.00 0.00 3.18
5836 5922 0.386858 CGGTACAGAGGACACACGTG 60.387 60.000 15.48 15.48 0.00 4.49
5839 5925 3.251571 GAAATCGGTACAGAGGACACAC 58.748 50.000 1.40 0.00 0.00 3.82
5840 5926 2.894765 TGAAATCGGTACAGAGGACACA 59.105 45.455 1.40 0.00 0.00 3.72
5841 5927 3.251571 GTGAAATCGGTACAGAGGACAC 58.748 50.000 1.40 7.47 0.00 3.67
5848 5934 3.000727 GGAAGTGGTGAAATCGGTACAG 58.999 50.000 0.00 0.00 0.00 2.74
5851 5937 4.091549 AGTAGGAAGTGGTGAAATCGGTA 58.908 43.478 0.00 0.00 0.00 4.02
5852 5938 2.904434 AGTAGGAAGTGGTGAAATCGGT 59.096 45.455 0.00 0.00 0.00 4.69
5878 5964 8.251721 GTGATGTTAGGACAGATGTAGTTAACT 58.748 37.037 13.68 13.68 39.58 2.24
5879 5965 7.491696 GGTGATGTTAGGACAGATGTAGTTAAC 59.508 40.741 0.00 0.00 39.58 2.01
5983 6069 7.984002 TGAAATTGCAAATTGTATACGATGG 57.016 32.000 4.04 3.91 0.00 3.51
6055 6142 9.213777 AGAGAACTGTCATCCTACCAAAATATA 57.786 33.333 0.00 0.00 0.00 0.86
6058 6145 6.380079 AGAGAACTGTCATCCTACCAAAAT 57.620 37.500 0.00 0.00 0.00 1.82
6063 6150 3.319689 GCCTAGAGAACTGTCATCCTACC 59.680 52.174 0.00 0.00 0.00 3.18
6117 6204 5.007034 TCCCAAGCAAACGATTAGAAATCA 58.993 37.500 0.00 0.00 0.00 2.57
6218 6305 3.619038 GCTCTTTCACCTACGAGAATTGG 59.381 47.826 0.00 0.00 0.00 3.16
6220 6307 4.220821 TCAGCTCTTTCACCTACGAGAATT 59.779 41.667 0.00 0.00 0.00 2.17
6487 6574 7.365840 AGCGGATAAAGAAACTTCAAGTAAG 57.634 36.000 0.00 0.00 41.33 2.34
6508 6595 4.033587 ACCTAACGCAAATGTATACAAGCG 59.966 41.667 31.40 31.40 44.89 4.68
6576 6663 1.533469 AACGTTCTCTGGTCTCCCCG 61.533 60.000 0.00 0.00 35.15 5.73
6593 6680 1.332377 GCGCTGCGTCTATCATTCAAC 60.332 52.381 24.04 0.00 0.00 3.18
6599 6686 0.871592 GTGATGCGCTGCGTCTATCA 60.872 55.000 24.04 23.98 44.07 2.15
6698 6785 7.294720 TGATGGTTCTGGGAATAGTAATACCAT 59.705 37.037 0.00 0.00 44.20 3.55
6700 6787 7.016268 TCTGATGGTTCTGGGAATAGTAATACC 59.984 40.741 0.00 0.00 0.00 2.73
6701 6788 7.963532 TCTGATGGTTCTGGGAATAGTAATAC 58.036 38.462 0.00 0.00 0.00 1.89
6703 6790 7.456725 CATCTGATGGTTCTGGGAATAGTAAT 58.543 38.462 9.82 0.00 0.00 1.89
6706 6793 4.103785 CCATCTGATGGTTCTGGGAATAGT 59.896 45.833 25.34 0.00 45.54 2.12
6707 6794 4.649692 CCATCTGATGGTTCTGGGAATAG 58.350 47.826 25.34 0.00 45.54 1.73
6708 6795 4.712051 CCATCTGATGGTTCTGGGAATA 57.288 45.455 25.34 0.00 45.54 1.75
6730 6817 5.753438 TCATAGGCAAAAGCTTATAGTGACG 59.247 40.000 0.00 0.00 0.00 4.35
6731 6818 7.553881 TTCATAGGCAAAAGCTTATAGTGAC 57.446 36.000 0.00 0.00 0.00 3.67
6746 6833 7.559486 AGATTATAAGCATCGATTCATAGGCA 58.441 34.615 3.17 0.00 0.00 4.75
6769 6857 7.537306 GCGACACAAAATTAGCTGAATTTAAGA 59.463 33.333 0.00 0.00 45.21 2.10
6794 6882 2.278726 TTGCAACAGCGCAACAGC 60.279 55.556 11.47 9.22 46.61 4.40
6799 6887 0.314618 ACATTGATTGCAACAGCGCA 59.685 45.000 11.47 0.00 41.03 6.09
6800 6888 1.421382 AACATTGATTGCAACAGCGC 58.579 45.000 0.00 0.00 36.72 5.92
6801 6889 4.455917 AAAAACATTGATTGCAACAGCG 57.544 36.364 0.00 0.37 36.72 5.18
6832 6922 1.920835 AGAGGGCGGCCTCTCTTTT 60.921 57.895 45.23 28.96 42.83 2.27
6840 6930 4.610714 GAATCGGAGAGGGCGGCC 62.611 72.222 22.67 22.67 43.63 6.13
6844 6934 4.202326 TGTTTAATAGGAATCGGAGAGGGC 60.202 45.833 0.00 0.00 43.63 5.19
6852 6942 8.840321 ACCAGATGATTTGTTTAATAGGAATCG 58.160 33.333 0.00 0.00 31.15 3.34
6857 6947 6.912591 GCGAACCAGATGATTTGTTTAATAGG 59.087 38.462 0.00 0.00 0.00 2.57
6866 6956 2.095110 TGCTTGCGAACCAGATGATTTG 60.095 45.455 0.00 0.00 0.00 2.32
6867 6957 2.161855 TGCTTGCGAACCAGATGATTT 58.838 42.857 0.00 0.00 0.00 2.17
6870 6960 2.279741 GTATGCTTGCGAACCAGATGA 58.720 47.619 0.00 0.00 0.00 2.92
6881 6972 0.107214 TAGTGCCCAGGTATGCTTGC 60.107 55.000 0.00 0.00 0.00 4.01
6889 6980 4.584638 TTGATATTTGTAGTGCCCAGGT 57.415 40.909 0.00 0.00 0.00 4.00
6893 6984 5.183904 GGGATGATTGATATTTGTAGTGCCC 59.816 44.000 0.00 0.00 0.00 5.36
6911 7002 4.159557 TGTAATGATCGATCAGGGGATGA 58.840 43.478 30.11 6.58 43.70 2.92
6950 7042 4.865365 GTGATTTCTACTTTCGCTGCTAGT 59.135 41.667 0.00 1.27 0.00 2.57
6955 7047 3.334691 TGGGTGATTTCTACTTTCGCTG 58.665 45.455 0.00 0.00 0.00 5.18
6959 7051 6.004574 AGAGGTTTGGGTGATTTCTACTTTC 58.995 40.000 0.00 0.00 0.00 2.62
6970 7062 2.568956 CTCTGATGAGAGGTTTGGGTGA 59.431 50.000 0.48 0.00 42.03 4.02
6971 7063 2.983229 CTCTGATGAGAGGTTTGGGTG 58.017 52.381 0.48 0.00 42.03 4.61
6984 7077 5.674525 TGTTAATCTAACCTGCCTCTGATG 58.325 41.667 0.00 0.00 37.88 3.07
7003 7096 3.035363 TGTCAGTTGTGGAGACCTGTTA 58.965 45.455 0.00 0.00 0.00 2.41
7014 7107 3.853671 GCTTTGTCAGTTTGTCAGTTGTG 59.146 43.478 0.00 0.00 0.00 3.33
7074 7169 5.148502 AGTTCTACTTGAGGGAGAAGTTCA 58.851 41.667 5.50 0.00 35.30 3.18
7108 7203 2.347731 CTTAACTCCTCTGCGAAACCC 58.652 52.381 0.00 0.00 0.00 4.11
7126 7221 1.980765 TCTTCAGATCACCAGTGGCTT 59.019 47.619 9.78 0.00 0.00 4.35
7127 7222 1.649321 TCTTCAGATCACCAGTGGCT 58.351 50.000 9.78 0.00 0.00 4.75
7169 7264 6.881065 ACCATGAAGTCCATTATATCGATTGG 59.119 38.462 1.71 5.23 31.94 3.16
7178 7273 6.650120 ACGAAGTAACCATGAAGTCCATTAT 58.350 36.000 0.00 0.00 41.94 1.28
7213 7308 8.586570 TGATCTGACAACGCAAAATAATTTTT 57.413 26.923 0.00 0.00 35.41 1.94
7226 7321 4.800993 GGTCATACTTCTGATCTGACAACG 59.199 45.833 1.16 0.00 38.33 4.10
7230 7325 4.902443 TCGGTCATACTTCTGATCTGAC 57.098 45.455 1.16 1.32 36.38 3.51
7246 7341 3.060602 CTCTTCAGGTGTTCTTTCGGTC 58.939 50.000 0.00 0.00 0.00 4.79
7268 7363 1.405461 CAGGTGTCGTTGACAGTACG 58.595 55.000 0.00 0.00 43.57 3.67
7271 7366 0.104304 GTCCAGGTGTCGTTGACAGT 59.896 55.000 0.00 0.00 43.57 3.55
7376 7471 1.740380 GCAAGGCGACTGATGAGCTAA 60.740 52.381 0.00 0.00 42.68 3.09
7378 7473 1.449246 GCAAGGCGACTGATGAGCT 60.449 57.895 0.00 0.00 42.68 4.09
7413 7508 2.125552 TCCATTCCGCGTCTGCTG 60.126 61.111 4.92 0.00 39.65 4.41
7422 7517 1.806542 CAACCTGTTCAGTCCATTCCG 59.193 52.381 0.00 0.00 0.00 4.30
7501 7596 2.596904 ATCCATACCTGAAACGGACG 57.403 50.000 0.00 0.00 0.00 4.79
7546 7641 6.540914 CACGAAGGGAAAAGGCATATAAGTAA 59.459 38.462 0.00 0.00 0.00 2.24
7604 7700 1.536766 CGTGAAATGCCTCTTGCTTCA 59.463 47.619 0.00 0.00 42.00 3.02
7630 7726 2.758089 CCACCATCGCTCTGCTTGC 61.758 63.158 0.00 0.00 0.00 4.01
7771 7869 5.437289 TGTACATTTGCCAGAAGAAGTTG 57.563 39.130 0.00 0.00 0.00 3.16
7823 7921 6.865834 TCCACCAGGCATGTATAAATTTTT 57.134 33.333 0.00 0.00 33.74 1.94
7824 7922 7.345392 AGAATCCACCAGGCATGTATAAATTTT 59.655 33.333 0.00 0.00 33.74 1.82
7825 7923 6.840705 AGAATCCACCAGGCATGTATAAATTT 59.159 34.615 0.00 0.00 33.74 1.82
7826 7924 6.266103 CAGAATCCACCAGGCATGTATAAATT 59.734 38.462 0.00 0.00 33.74 1.82
7827 7925 5.771666 CAGAATCCACCAGGCATGTATAAAT 59.228 40.000 0.00 0.00 33.74 1.40
7831 7929 2.511218 ACAGAATCCACCAGGCATGTAT 59.489 45.455 0.00 0.00 33.74 2.29
8078 8179 3.567478 ACTTTCAAGTCCAGCAAGTCT 57.433 42.857 0.00 0.00 32.86 3.24
8127 8228 4.526970 CAGTAATACTGCCATTTCCCACT 58.473 43.478 7.55 0.00 39.62 4.00
8156 8519 5.722021 AAACTAAGCATTTCGGTCCAAAT 57.278 34.783 0.00 0.00 0.00 2.32
8217 8580 6.540189 CCTAAATCTCACCATTACCTGAACAG 59.460 42.308 0.00 0.00 0.00 3.16
8241 8604 0.528684 GGAGTCACGCATACTCAGCC 60.529 60.000 12.68 0.00 44.25 4.85
8273 8636 9.425577 GTTTGTCTTTATTTAGCTCACTCTAGT 57.574 33.333 0.00 0.00 0.00 2.57
8279 8642 6.147328 ACCGAGTTTGTCTTTATTTAGCTCAC 59.853 38.462 0.00 0.00 0.00 3.51
8420 8783 0.663153 GAAGTATGATGCAACGGGGC 59.337 55.000 0.00 0.00 0.00 5.80
8465 8828 9.439500 AAGCATGCACATGTTAGATTTTAAAAT 57.561 25.926 21.98 13.24 40.80 1.82
8470 8833 5.172934 CCAAGCATGCACATGTTAGATTTT 58.827 37.500 21.98 0.00 40.80 1.82
8642 9007 5.407387 GCATCTGTTTTCATGCAAGTCAAAT 59.593 36.000 0.00 0.00 36.27 2.32
8660 9025 6.150641 CCTTTCCATGATATAAGGTGCATCTG 59.849 42.308 0.00 0.00 33.93 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.