Multiple sequence alignment - TraesCS7A01G184600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G184600 chr7A 100.000 4623 0 0 1 4623 138961388 138956766 0.000000e+00 8538.0
1 TraesCS7A01G184600 chr7B 92.708 3401 179 40 1267 4623 104032784 104029409 0.000000e+00 4843.0
2 TraesCS7A01G184600 chr7B 84.211 608 33 19 659 1220 104033374 104032784 2.450000e-147 532.0
3 TraesCS7A01G184600 chr7B 81.739 115 17 3 4269 4382 49192142 49192031 4.930000e-15 93.5
4 TraesCS7A01G184600 chr7B 81.739 115 15 5 4265 4378 683101576 683101467 1.770000e-14 91.6
5 TraesCS7A01G184600 chr7D 92.134 2479 143 25 1802 4244 139053043 139050581 0.000000e+00 3450.0
6 TraesCS7A01G184600 chr7D 86.924 673 30 22 659 1297 139054279 139053631 0.000000e+00 702.0
7 TraesCS7A01G184600 chr7D 90.529 454 32 4 1354 1799 139053607 139053157 1.430000e-164 590.0
8 TraesCS7A01G184600 chr7D 90.068 292 22 1 1 285 56238361 56238652 5.650000e-99 372.0
9 TraesCS7A01G184600 chr7D 97.826 92 2 0 557 648 599718436 599718527 4.790000e-35 159.0
10 TraesCS7A01G184600 chr2A 92.086 834 59 5 2264 3092 345885428 345884597 0.000000e+00 1168.0
11 TraesCS7A01G184600 chr2A 92.361 144 11 0 3192 3335 345884591 345884448 6.060000e-49 206.0
12 TraesCS7A01G184600 chr2A 95.413 109 4 1 2159 2266 345885676 345885568 6.150000e-39 172.0
13 TraesCS7A01G184600 chr3D 91.809 293 17 1 1 286 477891363 477891071 7.200000e-108 401.0
14 TraesCS7A01G184600 chr3D 91.126 293 19 1 1 286 43998577 43998285 1.560000e-104 390.0
15 TraesCS7A01G184600 chr3D 90.753 292 19 2 1 285 557976502 557976212 2.610000e-102 383.0
16 TraesCS7A01G184600 chr3D 89.583 288 23 1 1 281 551241535 551241822 4.400000e-95 359.0
17 TraesCS7A01G184600 chr3D 81.982 111 15 4 4269 4378 68912135 68912241 6.370000e-14 89.8
18 TraesCS7A01G184600 chr5D 91.438 292 18 2 1 285 396920094 396919803 1.210000e-105 394.0
19 TraesCS7A01G184600 chr5D 86.364 132 9 3 38 162 396917537 396917408 8.070000e-28 135.0
20 TraesCS7A01G184600 chr5D 82.143 112 15 4 4268 4378 68696887 68696994 1.770000e-14 91.6
21 TraesCS7A01G184600 chr5D 84.043 94 12 3 4286 4378 365693395 365693304 2.290000e-13 87.9
22 TraesCS7A01G184600 chr5B 89.347 291 24 1 3 286 165474467 165474757 4.400000e-95 359.0
23 TraesCS7A01G184600 chr5B 88.699 292 25 2 3 286 165878943 165879234 2.650000e-92 350.0
24 TraesCS7A01G184600 chr5B 96.809 94 3 0 559 652 696179016 696178923 1.720000e-34 158.0
25 TraesCS7A01G184600 chr3A 88.055 293 27 2 1 286 746582149 746582440 1.590000e-89 340.0
26 TraesCS7A01G184600 chr5A 96.809 94 3 0 562 655 367782483 367782390 1.720000e-34 158.0
27 TraesCS7A01G184600 chr5A 95.789 95 2 1 555 649 51547341 51547433 8.010000e-33 152.0
28 TraesCS7A01G184600 chr6A 94.175 103 4 2 562 663 66814694 66814593 6.190000e-34 156.0
29 TraesCS7A01G184600 chr2D 94.118 102 4 2 553 653 165009329 165009229 2.230000e-33 154.0
30 TraesCS7A01G184600 chr1B 94.175 103 2 4 550 650 497661690 497661590 2.230000e-33 154.0
31 TraesCS7A01G184600 chr1B 93.269 104 5 2 557 659 577654901 577655003 8.010000e-33 152.0
32 TraesCS7A01G184600 chr4B 93.269 104 5 2 562 663 646817747 646817644 8.010000e-33 152.0
33 TraesCS7A01G184600 chr4A 85.616 146 11 4 1 138 26762900 26763043 1.340000e-30 145.0
34 TraesCS7A01G184600 chrUn 83.871 93 15 0 4286 4378 326447913 326447821 6.370000e-14 89.8
35 TraesCS7A01G184600 chr2B 83.871 93 15 0 4286 4378 71381178 71381086 6.370000e-14 89.8
36 TraesCS7A01G184600 chr4D 80.000 115 20 2 4269 4383 477738864 477738753 1.070000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G184600 chr7A 138956766 138961388 4622 True 8538.000000 8538 100.000000 1 4623 1 chr7A.!!$R1 4622
1 TraesCS7A01G184600 chr7B 104029409 104033374 3965 True 2687.500000 4843 88.459500 659 4623 2 chr7B.!!$R3 3964
2 TraesCS7A01G184600 chr7D 139050581 139054279 3698 True 1580.666667 3450 89.862333 659 4244 3 chr7D.!!$R1 3585
3 TraesCS7A01G184600 chr2A 345884448 345885676 1228 True 515.333333 1168 93.286667 2159 3335 3 chr2A.!!$R1 1176
4 TraesCS7A01G184600 chr5D 396917408 396920094 2686 True 264.500000 394 88.901000 1 285 2 chr5D.!!$R2 284

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
829 859 0.179189 GGTCGTACCGTCGTACTTGG 60.179 60.0 0.00 0.00 42.38 3.61 F
1192 2223 0.457851 CGTCCAGACATCCAGAGGTC 59.542 60.0 4.33 4.33 41.94 3.85 F
1320 2626 0.613260 TTCTGCCTGCCTGTAATCGT 59.387 50.0 0.00 0.00 0.00 3.73 F
3167 4845 0.238553 GGCTTTCACGAAACTCAGCC 59.761 55.0 4.85 4.85 33.02 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2059 3575 0.108804 TTAGCAAGAGGGCTTCGTCG 60.109 55.000 0.0 0.0 42.71 5.12 R
2687 4350 2.093658 TGGCGAGAACAGAGTAATTCCC 60.094 50.000 0.0 0.0 0.00 3.97 R
3270 4948 2.124693 CGGGAGAGGCTGGAGTCTC 61.125 68.421 0.0 0.0 46.62 3.36 R
4421 6114 0.824595 TTCCGACGTGAAGAGACCCA 60.825 55.000 0.0 0.0 0.00 4.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.825090 TGCACGGAGAGATTTGCAAT 58.175 45.000 0.00 0.00 41.90 3.56
25 26 2.095059 GCACGGAGAGATTTGCAATGTT 60.095 45.455 0.00 0.00 34.97 2.71
27 28 4.651994 CACGGAGAGATTTGCAATGTTAC 58.348 43.478 0.00 0.00 0.00 2.50
42 43 6.478344 TGCAATGTTACCAATGTTTCTGAAAC 59.522 34.615 22.94 22.94 41.73 2.78
67 68 2.941064 GCTCTTGCTGCAATAGTCATCA 59.059 45.455 23.25 0.00 36.03 3.07
110 111 5.239525 GCTCTTGTTTCAATAGTCACCAACT 59.760 40.000 0.00 0.00 42.33 3.16
111 112 6.618287 TCTTGTTTCAATAGTCACCAACTG 57.382 37.500 0.00 0.00 39.11 3.16
134 142 5.978919 TGAAACAAAGCTCTTGTTGCAATAG 59.021 36.000 22.42 3.66 43.02 1.73
142 150 3.064207 TCTTGTTGCAATAGTCACCGAC 58.936 45.455 0.59 0.00 0.00 4.79
143 151 1.424403 TGTTGCAATAGTCACCGACG 58.576 50.000 0.59 0.00 37.67 5.12
151 159 2.410785 TAGTCACCGACGTGTTTCTG 57.589 50.000 0.00 0.00 41.09 3.02
205 213 4.855388 TCTTGTTGTAAAGAGCGATCGTAC 59.145 41.667 17.81 11.08 32.42 3.67
233 241 2.252855 CTAGATCGGACGGCTCGC 59.747 66.667 0.00 0.00 0.00 5.03
253 261 2.279784 GGCGGCGGATCTTCTGAG 60.280 66.667 9.78 0.00 0.00 3.35
298 306 9.878599 CGTAGCACTTCCCAATTTATATTTAAG 57.121 33.333 0.00 0.00 0.00 1.85
317 325 7.485418 TTTAAGAAAAGCTATCAACGTCACA 57.515 32.000 0.00 0.00 0.00 3.58
318 326 7.485418 TTAAGAAAAGCTATCAACGTCACAA 57.515 32.000 0.00 0.00 0.00 3.33
320 328 7.667043 AAGAAAAGCTATCAACGTCACAATA 57.333 32.000 0.00 0.00 0.00 1.90
321 329 7.061752 AGAAAAGCTATCAACGTCACAATAC 57.938 36.000 0.00 0.00 0.00 1.89
322 330 6.874134 AGAAAAGCTATCAACGTCACAATACT 59.126 34.615 0.00 0.00 0.00 2.12
323 331 8.033038 AGAAAAGCTATCAACGTCACAATACTA 58.967 33.333 0.00 0.00 0.00 1.82
324 332 8.542497 AAAAGCTATCAACGTCACAATACTAA 57.458 30.769 0.00 0.00 0.00 2.24
326 334 8.542497 AAGCTATCAACGTCACAATACTAAAA 57.458 30.769 0.00 0.00 0.00 1.52
327 335 8.718102 AGCTATCAACGTCACAATACTAAAAT 57.282 30.769 0.00 0.00 0.00 1.82
383 391 9.513906 TCTAATGATGTTGGTTTAATGTTCTGA 57.486 29.630 0.00 0.00 0.00 3.27
388 396 8.420222 TGATGTTGGTTTAATGTTCTGAATGTT 58.580 29.630 0.00 0.00 0.00 2.71
389 397 8.816640 ATGTTGGTTTAATGTTCTGAATGTTC 57.183 30.769 0.00 0.00 0.00 3.18
390 398 7.776107 TGTTGGTTTAATGTTCTGAATGTTCA 58.224 30.769 0.00 0.00 35.57 3.18
391 399 8.420222 TGTTGGTTTAATGTTCTGAATGTTCAT 58.580 29.630 0.00 0.00 36.46 2.57
425 433 8.682936 ATGTAAGTTTGACTTCAGACAAATCT 57.317 30.769 7.54 5.02 40.50 2.40
426 434 8.506168 TGTAAGTTTGACTTCAGACAAATCTT 57.494 30.769 7.54 12.70 40.50 2.40
427 435 9.607988 TGTAAGTTTGACTTCAGACAAATCTTA 57.392 29.630 7.54 12.01 40.50 2.10
428 436 9.865484 GTAAGTTTGACTTCAGACAAATCTTAC 57.135 33.333 22.16 22.16 40.60 2.34
429 437 7.178712 AGTTTGACTTCAGACAAATCTTACG 57.821 36.000 7.54 0.00 40.50 3.18
430 438 6.761714 AGTTTGACTTCAGACAAATCTTACGT 59.238 34.615 7.54 0.00 40.50 3.57
431 439 6.525121 TTGACTTCAGACAAATCTTACGTG 57.475 37.500 0.00 0.00 30.42 4.49
432 440 4.447724 TGACTTCAGACAAATCTTACGTGC 59.552 41.667 0.00 0.00 30.42 5.34
433 441 3.428870 ACTTCAGACAAATCTTACGTGCG 59.571 43.478 0.00 0.00 30.42 5.34
434 442 3.291809 TCAGACAAATCTTACGTGCGA 57.708 42.857 0.00 0.00 30.42 5.10
435 443 3.644823 TCAGACAAATCTTACGTGCGAA 58.355 40.909 0.00 0.00 30.42 4.70
436 444 3.673338 TCAGACAAATCTTACGTGCGAAG 59.327 43.478 0.00 0.00 30.42 3.79
437 445 3.428870 CAGACAAATCTTACGTGCGAAGT 59.571 43.478 0.00 0.00 30.42 3.01
438 446 4.619760 CAGACAAATCTTACGTGCGAAGTA 59.380 41.667 0.00 0.00 30.42 2.24
439 447 5.118050 CAGACAAATCTTACGTGCGAAGTAA 59.882 40.000 0.00 0.00 30.42 2.24
440 448 5.693104 AGACAAATCTTACGTGCGAAGTAAA 59.307 36.000 0.00 0.00 34.18 2.01
441 449 6.201425 AGACAAATCTTACGTGCGAAGTAAAA 59.799 34.615 0.00 0.00 34.18 1.52
442 450 6.717413 ACAAATCTTACGTGCGAAGTAAAAA 58.283 32.000 0.00 0.00 34.18 1.94
443 451 7.357303 ACAAATCTTACGTGCGAAGTAAAAAT 58.643 30.769 0.00 0.00 34.18 1.82
444 452 8.497554 ACAAATCTTACGTGCGAAGTAAAAATA 58.502 29.630 0.00 0.00 34.18 1.40
445 453 9.320406 CAAATCTTACGTGCGAAGTAAAAATAA 57.680 29.630 0.00 0.00 34.18 1.40
446 454 9.881529 AAATCTTACGTGCGAAGTAAAAATAAA 57.118 25.926 0.00 0.00 34.18 1.40
447 455 8.870242 ATCTTACGTGCGAAGTAAAAATAAAC 57.130 30.769 0.00 0.00 34.18 2.01
448 456 7.003072 TCTTACGTGCGAAGTAAAAATAAACG 58.997 34.615 0.00 0.00 34.18 3.60
449 457 4.456914 ACGTGCGAAGTAAAAATAAACGG 58.543 39.130 0.00 0.00 33.09 4.44
450 458 3.841872 CGTGCGAAGTAAAAATAAACGGG 59.158 43.478 0.00 0.00 0.00 5.28
451 459 4.160594 GTGCGAAGTAAAAATAAACGGGG 58.839 43.478 0.00 0.00 0.00 5.73
452 460 4.070716 TGCGAAGTAAAAATAAACGGGGA 58.929 39.130 0.00 0.00 0.00 4.81
453 461 4.154556 TGCGAAGTAAAAATAAACGGGGAG 59.845 41.667 0.00 0.00 0.00 4.30
454 462 4.154737 GCGAAGTAAAAATAAACGGGGAGT 59.845 41.667 0.00 0.00 0.00 3.85
455 463 5.351189 GCGAAGTAAAAATAAACGGGGAGTA 59.649 40.000 0.00 0.00 0.00 2.59
456 464 6.673076 GCGAAGTAAAAATAAACGGGGAGTAC 60.673 42.308 0.00 0.00 0.00 2.73
457 465 6.368516 CGAAGTAAAAATAAACGGGGAGTACA 59.631 38.462 0.00 0.00 0.00 2.90
458 466 7.064966 CGAAGTAAAAATAAACGGGGAGTACAT 59.935 37.037 0.00 0.00 0.00 2.29
459 467 8.640063 AAGTAAAAATAAACGGGGAGTACATT 57.360 30.769 0.00 0.00 0.00 2.71
460 468 8.047413 AGTAAAAATAAACGGGGAGTACATTG 57.953 34.615 0.00 0.00 0.00 2.82
461 469 7.884354 AGTAAAAATAAACGGGGAGTACATTGA 59.116 33.333 0.00 0.00 0.00 2.57
462 470 7.527568 AAAAATAAACGGGGAGTACATTGAA 57.472 32.000 0.00 0.00 0.00 2.69
463 471 6.505044 AAATAAACGGGGAGTACATTGAAC 57.495 37.500 0.00 0.00 0.00 3.18
464 472 3.495434 AAACGGGGAGTACATTGAACA 57.505 42.857 0.00 0.00 0.00 3.18
465 473 3.713826 AACGGGGAGTACATTGAACAT 57.286 42.857 0.00 0.00 0.00 2.71
466 474 3.713826 ACGGGGAGTACATTGAACATT 57.286 42.857 0.00 0.00 0.00 2.71
467 475 3.343617 ACGGGGAGTACATTGAACATTG 58.656 45.455 0.00 0.00 0.00 2.82
468 476 3.244770 ACGGGGAGTACATTGAACATTGT 60.245 43.478 0.00 7.34 0.00 2.71
469 477 3.374058 CGGGGAGTACATTGAACATTGTC 59.626 47.826 5.77 0.68 0.00 3.18
470 478 4.589908 GGGGAGTACATTGAACATTGTCT 58.410 43.478 5.77 4.45 0.00 3.41
471 479 4.636206 GGGGAGTACATTGAACATTGTCTC 59.364 45.833 5.77 10.77 0.00 3.36
472 480 4.636206 GGGAGTACATTGAACATTGTCTCC 59.364 45.833 22.06 22.06 37.71 3.71
473 481 4.636206 GGAGTACATTGAACATTGTCTCCC 59.364 45.833 20.99 12.52 35.66 4.30
474 482 5.491982 GAGTACATTGAACATTGTCTCCCT 58.508 41.667 5.77 0.62 0.00 4.20
475 483 5.491982 AGTACATTGAACATTGTCTCCCTC 58.508 41.667 5.77 0.00 0.00 4.30
476 484 4.647564 ACATTGAACATTGTCTCCCTCT 57.352 40.909 0.00 0.00 0.00 3.69
477 485 4.990526 ACATTGAACATTGTCTCCCTCTT 58.009 39.130 0.00 0.00 0.00 2.85
478 486 5.388654 ACATTGAACATTGTCTCCCTCTTT 58.611 37.500 0.00 0.00 0.00 2.52
479 487 5.835280 ACATTGAACATTGTCTCCCTCTTTT 59.165 36.000 0.00 0.00 0.00 2.27
480 488 6.324770 ACATTGAACATTGTCTCCCTCTTTTT 59.675 34.615 0.00 0.00 0.00 1.94
501 509 4.654091 TTCTGTTCCTTTGGCAGAAAAG 57.346 40.909 4.04 0.00 43.56 2.27
502 510 2.362077 TCTGTTCCTTTGGCAGAAAAGC 59.638 45.455 1.29 0.00 36.46 3.51
503 511 2.363359 CTGTTCCTTTGGCAGAAAAGCT 59.637 45.455 0.00 0.00 36.10 3.74
504 512 2.765699 TGTTCCTTTGGCAGAAAAGCTT 59.234 40.909 0.00 0.00 36.10 3.74
505 513 3.126073 GTTCCTTTGGCAGAAAAGCTTG 58.874 45.455 0.00 0.00 36.10 4.01
506 514 2.387757 TCCTTTGGCAGAAAAGCTTGT 58.612 42.857 0.00 0.00 36.10 3.16
507 515 2.101249 TCCTTTGGCAGAAAAGCTTGTG 59.899 45.455 0.00 0.00 36.10 3.33
508 516 2.101249 CCTTTGGCAGAAAAGCTTGTGA 59.899 45.455 0.00 0.00 36.10 3.58
509 517 2.869233 TTGGCAGAAAAGCTTGTGAC 57.131 45.000 0.00 0.58 34.34 3.67
510 518 2.057137 TGGCAGAAAAGCTTGTGACT 57.943 45.000 0.00 0.00 34.85 3.41
511 519 1.949525 TGGCAGAAAAGCTTGTGACTC 59.050 47.619 0.00 0.00 34.85 3.36
512 520 2.225467 GGCAGAAAAGCTTGTGACTCT 58.775 47.619 0.00 0.00 30.99 3.24
513 521 3.181455 TGGCAGAAAAGCTTGTGACTCTA 60.181 43.478 0.00 0.00 34.85 2.43
514 522 3.434984 GGCAGAAAAGCTTGTGACTCTAG 59.565 47.826 0.00 0.00 30.99 2.43
515 523 4.310769 GCAGAAAAGCTTGTGACTCTAGA 58.689 43.478 0.00 0.00 0.00 2.43
516 524 4.388469 GCAGAAAAGCTTGTGACTCTAGAG 59.612 45.833 18.49 18.49 0.00 2.43
517 525 5.777802 CAGAAAAGCTTGTGACTCTAGAGA 58.222 41.667 26.57 1.40 0.00 3.10
519 527 4.799564 AAAGCTTGTGACTCTAGAGAGG 57.200 45.455 26.57 5.38 46.13 3.69
520 528 3.730215 AGCTTGTGACTCTAGAGAGGA 57.270 47.619 26.57 6.40 46.13 3.71
521 529 4.040936 AGCTTGTGACTCTAGAGAGGAA 57.959 45.455 26.57 11.37 46.13 3.36
522 530 4.411927 AGCTTGTGACTCTAGAGAGGAAA 58.588 43.478 26.57 13.13 46.13 3.13
523 531 5.022787 AGCTTGTGACTCTAGAGAGGAAAT 58.977 41.667 26.57 2.01 46.13 2.17
524 532 6.191315 AGCTTGTGACTCTAGAGAGGAAATA 58.809 40.000 26.57 4.50 46.13 1.40
525 533 6.665680 AGCTTGTGACTCTAGAGAGGAAATAA 59.334 38.462 26.57 10.11 46.13 1.40
526 534 7.344352 AGCTTGTGACTCTAGAGAGGAAATAAT 59.656 37.037 26.57 0.00 46.13 1.28
527 535 7.984617 GCTTGTGACTCTAGAGAGGAAATAATT 59.015 37.037 26.57 0.00 46.13 1.40
528 536 9.883142 CTTGTGACTCTAGAGAGGAAATAATTT 57.117 33.333 26.57 0.00 46.13 1.82
543 551 9.394477 AGGAAATAATTTAAATCGCTTAATCGC 57.606 29.630 0.10 0.00 29.52 4.58
544 552 9.176181 GGAAATAATTTAAATCGCTTAATCGCA 57.824 29.630 0.10 0.00 29.52 5.10
549 557 7.623268 ATTTAAATCGCTTAATCGCATTTCC 57.377 32.000 10.30 0.00 29.52 3.13
550 558 4.630894 AAATCGCTTAATCGCATTTCCA 57.369 36.364 0.00 0.00 0.00 3.53
551 559 4.630894 AATCGCTTAATCGCATTTCCAA 57.369 36.364 0.00 0.00 0.00 3.53
552 560 4.836125 ATCGCTTAATCGCATTTCCAAT 57.164 36.364 0.00 0.00 0.00 3.16
553 561 4.630894 TCGCTTAATCGCATTTCCAATT 57.369 36.364 0.00 0.00 0.00 2.32
554 562 4.992688 TCGCTTAATCGCATTTCCAATTT 58.007 34.783 0.00 0.00 0.00 1.82
555 563 5.406649 TCGCTTAATCGCATTTCCAATTTT 58.593 33.333 0.00 0.00 0.00 1.82
556 564 6.556212 TCGCTTAATCGCATTTCCAATTTTA 58.444 32.000 0.00 0.00 0.00 1.52
557 565 7.030165 TCGCTTAATCGCATTTCCAATTTTAA 58.970 30.769 0.00 0.00 0.00 1.52
558 566 7.542477 TCGCTTAATCGCATTTCCAATTTTAAA 59.458 29.630 0.00 0.00 0.00 1.52
559 567 7.840797 CGCTTAATCGCATTTCCAATTTTAAAG 59.159 33.333 0.00 0.00 0.00 1.85
560 568 7.635973 GCTTAATCGCATTTCCAATTTTAAAGC 59.364 33.333 0.00 0.00 0.00 3.51
561 569 8.770438 TTAATCGCATTTCCAATTTTAAAGCT 57.230 26.923 0.00 0.00 0.00 3.74
562 570 9.862371 TTAATCGCATTTCCAATTTTAAAGCTA 57.138 25.926 0.00 0.00 0.00 3.32
563 571 7.755582 ATCGCATTTCCAATTTTAAAGCTAC 57.244 32.000 0.00 0.00 0.00 3.58
564 572 6.919721 TCGCATTTCCAATTTTAAAGCTACT 58.080 32.000 0.00 0.00 0.00 2.57
565 573 7.027161 TCGCATTTCCAATTTTAAAGCTACTC 58.973 34.615 0.00 0.00 0.00 2.59
566 574 6.253512 CGCATTTCCAATTTTAAAGCTACTCC 59.746 38.462 0.00 0.00 0.00 3.85
567 575 6.535150 GCATTTCCAATTTTAAAGCTACTCCC 59.465 38.462 0.00 0.00 0.00 4.30
568 576 7.579531 GCATTTCCAATTTTAAAGCTACTCCCT 60.580 37.037 0.00 0.00 0.00 4.20
569 577 7.462571 TTTCCAATTTTAAAGCTACTCCCTC 57.537 36.000 0.00 0.00 0.00 4.30
570 578 6.388619 TCCAATTTTAAAGCTACTCCCTCT 57.611 37.500 0.00 0.00 0.00 3.69
571 579 6.180472 TCCAATTTTAAAGCTACTCCCTCTG 58.820 40.000 0.00 0.00 0.00 3.35
572 580 5.946377 CCAATTTTAAAGCTACTCCCTCTGT 59.054 40.000 0.00 0.00 0.00 3.41
573 581 7.037873 TCCAATTTTAAAGCTACTCCCTCTGTA 60.038 37.037 0.00 0.00 0.00 2.74
574 582 7.610305 CCAATTTTAAAGCTACTCCCTCTGTAA 59.390 37.037 0.00 0.00 0.00 2.41
575 583 9.010029 CAATTTTAAAGCTACTCCCTCTGTAAA 57.990 33.333 0.00 0.00 0.00 2.01
576 584 7.974482 TTTTAAAGCTACTCCCTCTGTAAAC 57.026 36.000 0.00 0.00 0.00 2.01
577 585 6.930068 TTAAAGCTACTCCCTCTGTAAACT 57.070 37.500 0.00 0.00 0.00 2.66
578 586 8.426569 TTTAAAGCTACTCCCTCTGTAAACTA 57.573 34.615 0.00 0.00 0.00 2.24
579 587 6.930068 AAAGCTACTCCCTCTGTAAACTAA 57.070 37.500 0.00 0.00 0.00 2.24
580 588 7.497773 AAAGCTACTCCCTCTGTAAACTAAT 57.502 36.000 0.00 0.00 0.00 1.73
581 589 8.605325 AAAGCTACTCCCTCTGTAAACTAATA 57.395 34.615 0.00 0.00 0.00 0.98
582 590 8.785184 AAGCTACTCCCTCTGTAAACTAATAT 57.215 34.615 0.00 0.00 0.00 1.28
583 591 9.878737 AAGCTACTCCCTCTGTAAACTAATATA 57.121 33.333 0.00 0.00 0.00 0.86
584 592 9.878737 AGCTACTCCCTCTGTAAACTAATATAA 57.121 33.333 0.00 0.00 0.00 0.98
588 596 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
589 597 8.777578 TCCCTCTGTAAACTAATATAAGAGCA 57.222 34.615 0.00 0.00 0.00 4.26
590 598 9.381038 TCCCTCTGTAAACTAATATAAGAGCAT 57.619 33.333 0.00 0.00 0.00 3.79
640 648 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
641 649 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
642 650 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
643 651 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
644 652 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
645 653 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
646 654 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
647 655 9.294614 CTTATATTAGTTTACGGAGGGAGTACT 57.705 37.037 0.00 0.00 0.00 2.73
648 656 9.646522 TTATATTAGTTTACGGAGGGAGTACTT 57.353 33.333 0.00 0.00 0.00 2.24
649 657 6.864151 ATTAGTTTACGGAGGGAGTACTTT 57.136 37.500 0.00 0.00 0.00 2.66
650 658 6.670695 TTAGTTTACGGAGGGAGTACTTTT 57.329 37.500 0.00 0.00 0.00 2.27
651 659 5.557576 AGTTTACGGAGGGAGTACTTTTT 57.442 39.130 0.00 0.00 0.00 1.94
680 688 5.045215 TCTAAAAGTAACCACCGATATGCG 58.955 41.667 0.00 0.00 40.47 4.73
736 744 0.390735 ATACACGGCGTTTCCAGGAC 60.391 55.000 11.19 0.00 34.01 3.85
828 858 3.296516 GGTCGTACCGTCGTACTTG 57.703 57.895 0.00 0.00 42.38 3.16
829 859 0.179189 GGTCGTACCGTCGTACTTGG 60.179 60.000 0.00 0.00 42.38 3.61
830 860 0.517316 GTCGTACCGTCGTACTTGGT 59.483 55.000 5.93 5.93 42.38 3.67
831 861 1.730064 GTCGTACCGTCGTACTTGGTA 59.270 52.381 4.25 4.25 42.38 3.25
835 865 1.168714 ACCGTCGTACTTGGTACTCC 58.831 55.000 6.33 0.00 36.93 3.85
836 866 1.271597 ACCGTCGTACTTGGTACTCCT 60.272 52.381 6.33 0.00 36.93 3.69
896 927 4.440127 TTAAGACCGGGACCGCGC 62.440 66.667 6.32 0.00 38.24 6.86
1192 2223 0.457851 CGTCCAGACATCCAGAGGTC 59.542 60.000 4.33 4.33 41.94 3.85
1211 2242 3.429684 GGTCTGTCTCTCCGATTCTTTCC 60.430 52.174 0.00 0.00 0.00 3.13
1226 2532 2.562298 TCTTTCCATTGCTCGGCATTTT 59.438 40.909 0.00 0.00 38.76 1.82
1227 2533 3.006752 TCTTTCCATTGCTCGGCATTTTT 59.993 39.130 0.00 0.00 38.76 1.94
1262 2568 3.067106 GTTTTCAGCTGAGTTGGATCGA 58.933 45.455 17.43 0.00 0.00 3.59
1299 2605 1.542915 GACTGGGCCGACGCTAATATA 59.457 52.381 0.00 0.00 34.44 0.86
1320 2626 0.613260 TTCTGCCTGCCTGTAATCGT 59.387 50.000 0.00 0.00 0.00 3.73
1322 2628 1.078497 TGCCTGCCTGTAATCGTGG 60.078 57.895 0.00 0.00 0.00 4.94
1325 2631 1.602237 CTGCCTGTAATCGTGGGGT 59.398 57.895 0.00 0.00 0.00 4.95
1473 2779 1.590932 TACGCGTGGGCTAAACAAAA 58.409 45.000 24.59 0.00 36.88 2.44
1503 2809 4.127907 GTTTCAGGGTAGGTAGCTAATGC 58.872 47.826 2.58 0.00 40.05 3.56
1661 2969 8.478877 TCCTAGAAGAATAAACTGATGGAGTTC 58.521 37.037 0.00 0.00 44.68 3.01
1671 2979 3.189287 ACTGATGGAGTTCAAATCAACGC 59.811 43.478 0.00 0.00 30.28 4.84
1706 3014 8.092068 TCTTGTTGTCGAATTTGTTCTAGGATA 58.908 33.333 0.00 0.00 0.00 2.59
1707 3015 7.827819 TGTTGTCGAATTTGTTCTAGGATAG 57.172 36.000 0.00 0.00 41.04 2.08
1708 3016 6.816640 TGTTGTCGAATTTGTTCTAGGATAGG 59.183 38.462 0.00 0.00 39.78 2.57
1709 3017 6.540438 TGTCGAATTTGTTCTAGGATAGGT 57.460 37.500 0.00 0.00 39.78 3.08
1710 3018 7.649533 TGTCGAATTTGTTCTAGGATAGGTA 57.350 36.000 0.00 0.00 39.78 3.08
1715 3031 9.460906 CGAATTTGTTCTAGGATAGGTAAGTAC 57.539 37.037 0.00 0.00 39.78 2.73
1736 3052 9.897744 AAGTACATGTGAAATTGTCTAATTGTG 57.102 29.630 9.11 0.00 36.65 3.33
1740 3056 5.211454 TGTGAAATTGTCTAATTGTGTGCG 58.789 37.500 0.00 0.00 36.65 5.34
1741 3057 4.616802 GTGAAATTGTCTAATTGTGTGCGG 59.383 41.667 0.00 0.00 36.65 5.69
1753 3069 2.241190 TGTGCGGCAACAGTGTACG 61.241 57.895 3.23 3.27 0.00 3.67
1760 3076 1.375523 CAACAGTGTACGGCTCCCC 60.376 63.158 0.00 0.00 0.00 4.81
1762 3078 2.683933 CAGTGTACGGCTCCCCCT 60.684 66.667 0.00 0.00 0.00 4.79
1767 3083 2.120940 TACGGCTCCCCCTGTTCA 59.879 61.111 0.00 0.00 0.00 3.18
1888 3319 9.825972 CTAAGTTGTTTGGTGTAGTCAATTATG 57.174 33.333 0.00 0.00 0.00 1.90
1928 3364 8.621286 GCTTAGTACCACACTGCATATTTTAAT 58.379 33.333 0.00 0.00 38.24 1.40
1929 3365 9.935682 CTTAGTACCACACTGCATATTTTAATG 57.064 33.333 0.00 0.00 38.24 1.90
1932 3368 9.845740 AGTACCACACTGCATATTTTAATGATA 57.154 29.630 0.00 0.00 35.62 2.15
1935 3371 9.353431 ACCACACTGCATATTTTAATGATATGA 57.647 29.630 17.21 7.09 38.96 2.15
2059 3575 3.854666 TCAGAGCTTGCATAACTCAGTC 58.145 45.455 12.14 0.00 32.71 3.51
2084 3600 3.271729 GAAGCCCTCTTGCTAAAGGTAC 58.728 50.000 0.00 0.00 41.80 3.34
2091 3607 6.407752 GCCCTCTTGCTAAAGGTACATACTTA 60.408 42.308 0.00 0.00 33.90 2.24
2092 3608 7.689559 GCCCTCTTGCTAAAGGTACATACTTAT 60.690 40.741 0.00 0.00 33.90 1.73
2093 3609 8.867097 CCCTCTTGCTAAAGGTACATACTTATA 58.133 37.037 0.00 0.00 33.90 0.98
2482 4144 9.793259 ATTTTTCAGAGACAGTGAGGTAAATAA 57.207 29.630 0.00 0.00 0.00 1.40
2486 4148 6.667848 TCAGAGACAGTGAGGTAAATAATCCA 59.332 38.462 0.00 0.00 0.00 3.41
2717 4380 1.998315 CTGTTCTCGCCAACATCTCAG 59.002 52.381 0.15 0.00 35.70 3.35
2731 4394 8.122952 GCCAACATCTCAGTTGTAATATGTTAC 58.877 37.037 5.47 5.47 45.66 2.50
2732 4395 9.161629 CCAACATCTCAGTTGTAATATGTTACA 57.838 33.333 10.66 10.66 46.27 2.41
2764 4429 8.893727 ACGTTTTCTCCTTTAGATGAATAATGG 58.106 33.333 0.00 0.00 33.05 3.16
3078 4756 2.409378 CGTTTGCATCTTGATTGGTTGC 59.591 45.455 0.00 0.00 0.00 4.17
3167 4845 0.238553 GGCTTTCACGAAACTCAGCC 59.761 55.000 4.85 4.85 33.02 4.85
3270 4948 2.893489 TCATGGTCATAGATGGGTCTCG 59.107 50.000 0.00 0.00 35.87 4.04
3316 4994 4.074970 AGTTGTAATGCCCAAACAGAGAG 58.925 43.478 0.00 0.00 0.00 3.20
3510 5191 2.120274 CCAATGCACCACCCCCTT 59.880 61.111 0.00 0.00 0.00 3.95
3516 5197 1.045911 TGCACCACCCCCTTGAAAAC 61.046 55.000 0.00 0.00 0.00 2.43
3546 5227 4.263331 CCCCTGATGTAACTTACCTGTTGT 60.263 45.833 0.00 0.00 0.00 3.32
3559 5240 1.202879 CCTGTTGTGTTTCAGGCCCTA 60.203 52.381 0.00 0.00 43.45 3.53
3665 5346 5.647658 ACGATGCAATCCTTGTAGAATTTCA 59.352 36.000 0.00 0.00 41.39 2.69
3721 5402 7.243487 TCTTCATTTTTGTATCGCTCAACATC 58.757 34.615 0.00 0.00 0.00 3.06
3763 5444 4.016444 TGAAAAAGGAGTTGTGCTGAAGT 58.984 39.130 0.00 0.00 0.00 3.01
3776 5457 5.733676 TGTGCTGAAGTATGCTCTGATAAA 58.266 37.500 0.00 0.00 0.00 1.40
3832 5513 3.006323 AGCTCCACGGTTATGAGATCATC 59.994 47.826 0.00 0.00 37.76 2.92
3833 5514 3.243873 GCTCCACGGTTATGAGATCATCA 60.244 47.826 0.00 0.00 43.70 3.07
4084 5765 4.192317 GACCACAGTCCAATATCCAAGAC 58.808 47.826 0.00 0.00 37.00 3.01
4245 5938 7.755822 GTGAGATGTACAAAAGAGGTACTACAG 59.244 40.741 0.00 0.00 41.55 2.74
4255 5948 7.928307 AAAGAGGTACTACAGATTACGTGTA 57.072 36.000 0.00 0.00 41.55 2.90
4312 6005 3.932545 AAGATGCTATAGACAGCCGAG 57.067 47.619 3.21 0.00 41.04 4.63
4313 6006 1.543802 AGATGCTATAGACAGCCGAGC 59.456 52.381 3.21 0.00 41.04 5.03
4314 6007 1.543802 GATGCTATAGACAGCCGAGCT 59.456 52.381 3.21 0.00 41.04 4.09
4320 6013 0.246635 TAGACAGCCGAGCTTGAACC 59.753 55.000 1.22 0.00 36.40 3.62
4321 6014 2.357517 ACAGCCGAGCTTGAACCG 60.358 61.111 1.22 0.00 36.40 4.44
4328 6021 0.941542 CGAGCTTGAACCGTTTTGGA 59.058 50.000 0.00 0.00 42.00 3.53
4342 6035 2.933906 GTTTTGGACACTGTCTGAACGA 59.066 45.455 9.08 0.00 32.47 3.85
4372 6065 9.893305 AAAACGTCTTATAAAAATGAACAGAGG 57.107 29.630 0.00 0.00 0.00 3.69
4409 6102 5.070001 CCCTCCTGTTTGTCTTTTCATACA 58.930 41.667 0.00 0.00 0.00 2.29
4410 6103 5.534654 CCCTCCTGTTTGTCTTTTCATACAA 59.465 40.000 0.00 0.00 33.92 2.41
4427 6120 9.693739 TTTCATACAACATACAAATATGGGTCT 57.306 29.630 0.00 0.00 42.32 3.85
4428 6121 8.902540 TCATACAACATACAAATATGGGTCTC 57.097 34.615 0.00 0.00 42.32 3.36
4431 6124 7.865706 ACAACATACAAATATGGGTCTCTTC 57.134 36.000 0.00 0.00 42.32 2.87
4433 6126 7.336931 ACAACATACAAATATGGGTCTCTTCAC 59.663 37.037 0.00 0.00 42.32 3.18
4437 6130 3.438297 AATATGGGTCTCTTCACGTCG 57.562 47.619 0.00 0.00 0.00 5.12
4438 6131 1.100510 TATGGGTCTCTTCACGTCGG 58.899 55.000 0.00 0.00 0.00 4.79
4452 6145 5.333046 TCACGTCGGAAAATTGTAGTTTC 57.667 39.130 0.00 0.00 34.79 2.78
4467 6160 2.356135 AGTTTCCCATTCCATTCGACG 58.644 47.619 0.00 0.00 0.00 5.12
4476 6169 1.570813 TCCATTCGACGATGTGCATC 58.429 50.000 0.00 2.26 34.56 3.91
4479 6172 2.195922 CATTCGACGATGTGCATCTGA 58.804 47.619 0.00 3.41 35.72 3.27
4498 6191 9.028185 GCATCTGAAATTCAAATCATACCTTTC 57.972 33.333 0.00 0.00 0.00 2.62
4520 6213 3.005472 CAGTAACTCGGAACCAGTGAGAA 59.995 47.826 0.00 0.00 33.93 2.87
4530 6223 4.389374 GAACCAGTGAGAATTTGACCTCA 58.611 43.478 0.00 0.00 37.11 3.86
4556 6249 8.058667 TCATCTCGGTACTTTAAGTGTTGATA 57.941 34.615 8.00 0.00 0.00 2.15
4566 6259 5.957842 TTAAGTGTTGATAGCAGTTTGGG 57.042 39.130 0.00 0.00 32.45 4.12
4567 6260 2.162681 AGTGTTGATAGCAGTTTGGGC 58.837 47.619 0.00 0.00 0.00 5.36
4568 6261 1.885887 GTGTTGATAGCAGTTTGGGCA 59.114 47.619 0.00 0.00 0.00 5.36
4569 6262 2.493278 GTGTTGATAGCAGTTTGGGCAT 59.507 45.455 0.00 0.00 0.00 4.40
4570 6263 2.492881 TGTTGATAGCAGTTTGGGCATG 59.507 45.455 0.00 0.00 0.00 4.06
4614 6307 2.705658 AGGCTAGTAATGCTGCCACATA 59.294 45.455 12.33 0.00 41.05 2.29
4620 6313 6.980397 GCTAGTAATGCTGCCACATAAATTTT 59.020 34.615 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.302239 GCAAGAGCTTTGTTTCAGAAACATTGG 62.302 40.741 25.94 19.10 43.39 3.16
53 54 7.041848 TCGGAAACATATTGATGACTATTGCAG 60.042 37.037 0.00 0.00 36.48 4.41
110 111 3.865011 TGCAACAAGAGCTTTGTTTCA 57.135 38.095 18.37 17.35 40.30 2.69
111 112 5.979517 ACTATTGCAACAAGAGCTTTGTTTC 59.020 36.000 18.37 15.65 40.30 2.78
151 159 7.434897 TGACTATTGCAACAAGACATTTGTTTC 59.565 33.333 15.62 0.00 40.30 2.78
159 167 7.161404 AGAGTATTGACTATTGCAACAAGACA 58.839 34.615 20.53 15.77 37.07 3.41
235 243 3.798954 CTCAGAAGATCCGCCGCCC 62.799 68.421 0.00 0.00 0.00 6.13
253 261 2.202892 GTCGGCCGGTGGATCTTC 60.203 66.667 27.83 1.14 0.00 2.87
291 299 9.210329 TGTGACGTTGATAGCTTTTCTTAAATA 57.790 29.630 0.00 0.00 0.00 1.40
293 301 7.485418 TGTGACGTTGATAGCTTTTCTTAAA 57.515 32.000 0.00 0.00 0.00 1.52
294 302 7.485418 TTGTGACGTTGATAGCTTTTCTTAA 57.515 32.000 0.00 0.00 0.00 1.85
295 303 7.667043 ATTGTGACGTTGATAGCTTTTCTTA 57.333 32.000 0.00 0.00 0.00 2.10
296 304 6.560253 ATTGTGACGTTGATAGCTTTTCTT 57.440 33.333 0.00 0.00 0.00 2.52
298 306 7.061752 AGTATTGTGACGTTGATAGCTTTTC 57.938 36.000 0.00 0.00 0.00 2.29
299 307 8.542497 TTAGTATTGTGACGTTGATAGCTTTT 57.458 30.769 0.00 0.00 0.00 2.27
300 308 8.542497 TTTAGTATTGTGACGTTGATAGCTTT 57.458 30.769 0.00 0.00 0.00 3.51
301 309 8.542497 TTTTAGTATTGTGACGTTGATAGCTT 57.458 30.769 0.00 0.00 0.00 3.74
361 369 8.587608 ACATTCAGAACATTAAACCAACATCAT 58.412 29.630 0.00 0.00 0.00 2.45
362 370 7.950512 ACATTCAGAACATTAAACCAACATCA 58.049 30.769 0.00 0.00 0.00 3.07
365 373 7.776107 TGAACATTCAGAACATTAAACCAACA 58.224 30.769 0.00 0.00 32.50 3.33
366 374 8.816640 ATGAACATTCAGAACATTAAACCAAC 57.183 30.769 0.23 0.00 41.08 3.77
400 408 8.682936 AGATTTGTCTGAAGTCAAACTTACAT 57.317 30.769 5.13 0.00 38.80 2.29
401 409 8.506168 AAGATTTGTCTGAAGTCAAACTTACA 57.494 30.769 5.13 0.00 38.80 2.41
402 410 9.865484 GTAAGATTTGTCTGAAGTCAAACTTAC 57.135 33.333 21.29 21.29 38.80 2.34
403 411 8.761497 CGTAAGATTTGTCTGAAGTCAAACTTA 58.239 33.333 5.13 10.59 38.00 2.24
405 413 6.761714 ACGTAAGATTTGTCTGAAGTCAAACT 59.238 34.615 5.13 3.38 37.04 2.66
406 414 6.846283 CACGTAAGATTTGTCTGAAGTCAAAC 59.154 38.462 5.13 1.59 37.04 2.93
407 415 6.511121 GCACGTAAGATTTGTCTGAAGTCAAA 60.511 38.462 5.43 5.43 43.62 2.69
408 416 5.050363 GCACGTAAGATTTGTCTGAAGTCAA 60.050 40.000 0.00 0.00 43.62 3.18
409 417 4.447724 GCACGTAAGATTTGTCTGAAGTCA 59.552 41.667 0.00 0.00 43.62 3.41
410 418 4.433022 CGCACGTAAGATTTGTCTGAAGTC 60.433 45.833 0.00 0.00 43.62 3.01
411 419 3.428870 CGCACGTAAGATTTGTCTGAAGT 59.571 43.478 0.00 0.00 43.62 3.01
412 420 3.673338 TCGCACGTAAGATTTGTCTGAAG 59.327 43.478 0.00 0.00 43.62 3.02
413 421 3.644823 TCGCACGTAAGATTTGTCTGAA 58.355 40.909 0.00 0.00 43.62 3.02
414 422 3.291809 TCGCACGTAAGATTTGTCTGA 57.708 42.857 0.00 0.00 43.62 3.27
415 423 3.428870 ACTTCGCACGTAAGATTTGTCTG 59.571 43.478 3.62 0.00 43.62 3.51
416 424 3.650139 ACTTCGCACGTAAGATTTGTCT 58.350 40.909 3.62 0.00 43.62 3.41
417 425 5.505165 TTACTTCGCACGTAAGATTTGTC 57.495 39.130 3.62 0.00 43.62 3.18
418 426 5.910637 TTTACTTCGCACGTAAGATTTGT 57.089 34.783 3.62 2.34 43.62 2.83
419 427 7.775729 ATTTTTACTTCGCACGTAAGATTTG 57.224 32.000 3.62 0.00 43.62 2.32
420 428 9.881529 TTTATTTTTACTTCGCACGTAAGATTT 57.118 25.926 3.62 0.00 43.62 2.17
421 429 9.321590 GTTTATTTTTACTTCGCACGTAAGATT 57.678 29.630 3.62 0.00 43.62 2.40
422 430 7.685304 CGTTTATTTTTACTTCGCACGTAAGAT 59.315 33.333 3.62 0.00 43.62 2.40
423 431 7.003072 CGTTTATTTTTACTTCGCACGTAAGA 58.997 34.615 3.62 0.00 43.62 2.10
425 433 6.070196 CCGTTTATTTTTACTTCGCACGTAA 58.930 36.000 0.00 0.00 0.00 3.18
426 434 5.389307 CCCGTTTATTTTTACTTCGCACGTA 60.389 40.000 0.00 0.00 0.00 3.57
427 435 4.456914 CCGTTTATTTTTACTTCGCACGT 58.543 39.130 0.00 0.00 0.00 4.49
428 436 3.841872 CCCGTTTATTTTTACTTCGCACG 59.158 43.478 0.00 0.00 0.00 5.34
429 437 4.083377 TCCCCGTTTATTTTTACTTCGCAC 60.083 41.667 0.00 0.00 0.00 5.34
430 438 4.070716 TCCCCGTTTATTTTTACTTCGCA 58.929 39.130 0.00 0.00 0.00 5.10
431 439 4.154737 ACTCCCCGTTTATTTTTACTTCGC 59.845 41.667 0.00 0.00 0.00 4.70
432 440 5.868043 ACTCCCCGTTTATTTTTACTTCG 57.132 39.130 0.00 0.00 0.00 3.79
433 441 7.671495 TGTACTCCCCGTTTATTTTTACTTC 57.329 36.000 0.00 0.00 0.00 3.01
434 442 8.517056 CAATGTACTCCCCGTTTATTTTTACTT 58.483 33.333 0.00 0.00 0.00 2.24
435 443 7.884354 TCAATGTACTCCCCGTTTATTTTTACT 59.116 33.333 0.00 0.00 0.00 2.24
436 444 8.042944 TCAATGTACTCCCCGTTTATTTTTAC 57.957 34.615 0.00 0.00 0.00 2.01
437 445 8.513774 GTTCAATGTACTCCCCGTTTATTTTTA 58.486 33.333 0.00 0.00 0.00 1.52
438 446 7.014422 TGTTCAATGTACTCCCCGTTTATTTTT 59.986 33.333 0.00 0.00 0.00 1.94
439 447 6.490721 TGTTCAATGTACTCCCCGTTTATTTT 59.509 34.615 0.00 0.00 0.00 1.82
440 448 6.005198 TGTTCAATGTACTCCCCGTTTATTT 58.995 36.000 0.00 0.00 0.00 1.40
441 449 5.562635 TGTTCAATGTACTCCCCGTTTATT 58.437 37.500 0.00 0.00 0.00 1.40
442 450 5.168647 TGTTCAATGTACTCCCCGTTTAT 57.831 39.130 0.00 0.00 0.00 1.40
443 451 4.620589 TGTTCAATGTACTCCCCGTTTA 57.379 40.909 0.00 0.00 0.00 2.01
444 452 3.495434 TGTTCAATGTACTCCCCGTTT 57.505 42.857 0.00 0.00 0.00 3.60
445 453 3.713826 ATGTTCAATGTACTCCCCGTT 57.286 42.857 0.00 0.00 0.00 4.44
446 454 3.244770 ACAATGTTCAATGTACTCCCCGT 60.245 43.478 0.00 0.00 0.00 5.28
447 455 3.343617 ACAATGTTCAATGTACTCCCCG 58.656 45.455 0.00 0.00 0.00 5.73
448 456 4.589908 AGACAATGTTCAATGTACTCCCC 58.410 43.478 0.00 0.00 0.00 4.81
449 457 4.636206 GGAGACAATGTTCAATGTACTCCC 59.364 45.833 18.02 6.52 37.61 4.30
450 458 4.636206 GGGAGACAATGTTCAATGTACTCC 59.364 45.833 19.26 19.26 39.95 3.85
451 459 5.491982 AGGGAGACAATGTTCAATGTACTC 58.508 41.667 0.00 3.72 0.00 2.59
452 460 5.249393 AGAGGGAGACAATGTTCAATGTACT 59.751 40.000 0.00 0.00 0.00 2.73
453 461 5.491982 AGAGGGAGACAATGTTCAATGTAC 58.508 41.667 0.00 0.00 0.00 2.90
454 462 5.762179 AGAGGGAGACAATGTTCAATGTA 57.238 39.130 0.00 0.00 0.00 2.29
455 463 4.647564 AGAGGGAGACAATGTTCAATGT 57.352 40.909 0.00 0.00 0.00 2.71
456 464 5.972107 AAAGAGGGAGACAATGTTCAATG 57.028 39.130 0.00 0.00 0.00 2.82
457 465 6.983906 AAAAAGAGGGAGACAATGTTCAAT 57.016 33.333 0.00 0.00 0.00 2.57
480 488 3.181476 GCTTTTCTGCCAAAGGAACAGAA 60.181 43.478 0.75 0.75 45.95 3.02
481 489 2.362077 GCTTTTCTGCCAAAGGAACAGA 59.638 45.455 0.00 0.00 38.62 3.41
482 490 2.363359 AGCTTTTCTGCCAAAGGAACAG 59.637 45.455 3.18 0.00 34.75 3.16
483 491 2.387757 AGCTTTTCTGCCAAAGGAACA 58.612 42.857 3.18 0.00 34.75 3.18
484 492 3.126073 CAAGCTTTTCTGCCAAAGGAAC 58.874 45.455 0.00 0.00 34.75 3.62
485 493 2.765699 ACAAGCTTTTCTGCCAAAGGAA 59.234 40.909 0.00 0.00 34.75 3.36
486 494 2.101249 CACAAGCTTTTCTGCCAAAGGA 59.899 45.455 0.00 0.00 34.75 3.36
487 495 2.101249 TCACAAGCTTTTCTGCCAAAGG 59.899 45.455 0.00 0.00 34.75 3.11
488 496 3.118542 GTCACAAGCTTTTCTGCCAAAG 58.881 45.455 0.00 0.00 36.91 2.77
489 497 2.760092 AGTCACAAGCTTTTCTGCCAAA 59.240 40.909 0.00 0.00 0.00 3.28
490 498 2.358898 GAGTCACAAGCTTTTCTGCCAA 59.641 45.455 0.00 0.00 0.00 4.52
491 499 1.949525 GAGTCACAAGCTTTTCTGCCA 59.050 47.619 0.00 0.00 0.00 4.92
492 500 2.225467 AGAGTCACAAGCTTTTCTGCC 58.775 47.619 0.00 0.00 0.00 4.85
493 501 4.310769 TCTAGAGTCACAAGCTTTTCTGC 58.689 43.478 0.00 0.00 0.00 4.26
494 502 5.777802 TCTCTAGAGTCACAAGCTTTTCTG 58.222 41.667 19.21 0.00 0.00 3.02
495 503 5.047377 CCTCTCTAGAGTCACAAGCTTTTCT 60.047 44.000 19.21 0.00 40.48 2.52
496 504 5.047660 TCCTCTCTAGAGTCACAAGCTTTTC 60.048 44.000 19.21 0.00 40.48 2.29
497 505 4.835615 TCCTCTCTAGAGTCACAAGCTTTT 59.164 41.667 19.21 0.00 40.48 2.27
498 506 4.411927 TCCTCTCTAGAGTCACAAGCTTT 58.588 43.478 19.21 0.00 40.48 3.51
499 507 4.040936 TCCTCTCTAGAGTCACAAGCTT 57.959 45.455 19.21 0.00 40.48 3.74
500 508 3.730215 TCCTCTCTAGAGTCACAAGCT 57.270 47.619 19.21 0.00 40.48 3.74
501 509 4.792521 TTTCCTCTCTAGAGTCACAAGC 57.207 45.455 19.21 0.00 40.48 4.01
502 510 9.883142 AAATTATTTCCTCTCTAGAGTCACAAG 57.117 33.333 19.21 8.82 40.48 3.16
517 525 9.394477 GCGATTAAGCGATTTAAATTATTTCCT 57.606 29.630 18.69 0.00 35.03 3.36
518 526 9.176181 TGCGATTAAGCGATTTAAATTATTTCC 57.824 29.630 18.69 0.00 40.67 3.13
523 531 9.176181 GGAAATGCGATTAAGCGATTTAAATTA 57.824 29.630 18.69 0.00 40.67 1.40
524 532 7.704472 TGGAAATGCGATTAAGCGATTTAAATT 59.296 29.630 18.69 3.43 40.67 1.82
525 533 7.199766 TGGAAATGCGATTAAGCGATTTAAAT 58.800 30.769 18.69 0.00 40.67 1.40
526 534 6.556212 TGGAAATGCGATTAAGCGATTTAAA 58.444 32.000 18.69 8.56 40.67 1.52
527 535 6.125327 TGGAAATGCGATTAAGCGATTTAA 57.875 33.333 18.69 8.85 40.67 1.52
528 536 5.743026 TGGAAATGCGATTAAGCGATTTA 57.257 34.783 18.69 3.89 40.67 1.40
529 537 4.630894 TGGAAATGCGATTAAGCGATTT 57.369 36.364 18.69 17.79 40.67 2.17
530 538 4.630894 TTGGAAATGCGATTAAGCGATT 57.369 36.364 18.69 10.66 40.67 3.34
531 539 4.836125 ATTGGAAATGCGATTAAGCGAT 57.164 36.364 18.69 4.81 40.67 4.58
532 540 4.630894 AATTGGAAATGCGATTAAGCGA 57.369 36.364 18.69 2.36 40.67 4.93
533 541 5.701029 AAAATTGGAAATGCGATTAAGCG 57.299 34.783 9.13 9.13 40.67 4.68
534 542 7.635973 GCTTTAAAATTGGAAATGCGATTAAGC 59.364 33.333 5.61 5.61 37.71 3.09
535 543 8.872845 AGCTTTAAAATTGGAAATGCGATTAAG 58.127 29.630 0.00 0.00 0.00 1.85
536 544 8.770438 AGCTTTAAAATTGGAAATGCGATTAA 57.230 26.923 0.00 0.00 0.00 1.40
537 545 9.296400 GTAGCTTTAAAATTGGAAATGCGATTA 57.704 29.630 0.00 0.00 0.00 1.75
538 546 8.034804 AGTAGCTTTAAAATTGGAAATGCGATT 58.965 29.630 0.00 0.00 0.00 3.34
539 547 7.547227 AGTAGCTTTAAAATTGGAAATGCGAT 58.453 30.769 0.00 0.00 0.00 4.58
540 548 6.919721 AGTAGCTTTAAAATTGGAAATGCGA 58.080 32.000 0.00 0.00 0.00 5.10
541 549 6.253512 GGAGTAGCTTTAAAATTGGAAATGCG 59.746 38.462 0.00 0.00 0.00 4.73
542 550 6.535150 GGGAGTAGCTTTAAAATTGGAAATGC 59.465 38.462 0.00 0.00 0.00 3.56
543 551 7.840931 AGGGAGTAGCTTTAAAATTGGAAATG 58.159 34.615 0.00 0.00 0.00 2.32
544 552 7.895962 AGAGGGAGTAGCTTTAAAATTGGAAAT 59.104 33.333 0.00 0.00 0.00 2.17
545 553 7.176690 CAGAGGGAGTAGCTTTAAAATTGGAAA 59.823 37.037 0.00 0.00 0.00 3.13
546 554 6.659242 CAGAGGGAGTAGCTTTAAAATTGGAA 59.341 38.462 0.00 0.00 0.00 3.53
547 555 6.180472 CAGAGGGAGTAGCTTTAAAATTGGA 58.820 40.000 0.00 0.00 0.00 3.53
548 556 5.946377 ACAGAGGGAGTAGCTTTAAAATTGG 59.054 40.000 0.00 0.00 0.00 3.16
549 557 8.561738 TTACAGAGGGAGTAGCTTTAAAATTG 57.438 34.615 0.00 0.00 0.00 2.32
550 558 9.011095 GTTTACAGAGGGAGTAGCTTTAAAATT 57.989 33.333 0.00 0.00 0.00 1.82
551 559 8.383947 AGTTTACAGAGGGAGTAGCTTTAAAAT 58.616 33.333 0.00 0.00 0.00 1.82
552 560 7.742767 AGTTTACAGAGGGAGTAGCTTTAAAA 58.257 34.615 0.00 0.00 0.00 1.52
553 561 7.312415 AGTTTACAGAGGGAGTAGCTTTAAA 57.688 36.000 0.00 0.00 0.00 1.52
554 562 6.930068 AGTTTACAGAGGGAGTAGCTTTAA 57.070 37.500 0.00 0.00 0.00 1.52
555 563 8.605325 ATTAGTTTACAGAGGGAGTAGCTTTA 57.395 34.615 0.00 0.00 0.00 1.85
556 564 6.930068 TTAGTTTACAGAGGGAGTAGCTTT 57.070 37.500 0.00 0.00 0.00 3.51
557 565 8.785184 ATATTAGTTTACAGAGGGAGTAGCTT 57.215 34.615 0.00 0.00 0.00 3.74
558 566 9.878737 TTATATTAGTTTACAGAGGGAGTAGCT 57.121 33.333 0.00 0.00 0.00 3.32
562 570 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
563 571 8.861086 TGCTCTTATATTAGTTTACAGAGGGAG 58.139 37.037 0.00 0.00 0.00 4.30
564 572 8.777578 TGCTCTTATATTAGTTTACAGAGGGA 57.222 34.615 0.00 0.00 0.00 4.20
614 622 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
615 623 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
616 624 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
617 625 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
618 626 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
619 627 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
620 628 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
621 629 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
622 630 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
623 631 9.646522 AAAGTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
624 632 8.544687 AAAGTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
625 633 7.961326 AAAGTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
626 634 6.864151 AAAGTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
627 635 6.670695 AAAAGTACTCCCTCCGTAAACTAA 57.329 37.500 0.00 0.00 0.00 2.24
628 636 6.670695 AAAAAGTACTCCCTCCGTAAACTA 57.329 37.500 0.00 0.00 0.00 2.24
629 637 5.557576 AAAAAGTACTCCCTCCGTAAACT 57.442 39.130 0.00 0.00 0.00 2.66
653 661 8.238631 GCATATCGGTGGTTACTTTTAGAAAAA 58.761 33.333 0.00 0.00 0.00 1.94
654 662 7.413219 CGCATATCGGTGGTTACTTTTAGAAAA 60.413 37.037 0.00 0.00 33.78 2.29
655 663 6.036300 CGCATATCGGTGGTTACTTTTAGAAA 59.964 38.462 0.00 0.00 33.78 2.52
656 664 5.521010 CGCATATCGGTGGTTACTTTTAGAA 59.479 40.000 0.00 0.00 33.78 2.10
657 665 5.045215 CGCATATCGGTGGTTACTTTTAGA 58.955 41.667 0.00 0.00 33.78 2.10
658 666 4.318546 GCGCATATCGGTGGTTACTTTTAG 60.319 45.833 0.30 0.00 38.94 1.85
659 667 3.556775 GCGCATATCGGTGGTTACTTTTA 59.443 43.478 0.30 0.00 38.94 1.52
660 668 2.353579 GCGCATATCGGTGGTTACTTTT 59.646 45.455 0.30 0.00 38.94 2.27
661 669 1.937899 GCGCATATCGGTGGTTACTTT 59.062 47.619 0.30 0.00 38.94 2.66
662 670 1.134640 TGCGCATATCGGTGGTTACTT 60.135 47.619 5.66 0.00 38.94 2.24
663 671 0.462375 TGCGCATATCGGTGGTTACT 59.538 50.000 5.66 0.00 38.94 2.24
664 672 1.459592 GATGCGCATATCGGTGGTTAC 59.540 52.381 25.40 1.77 38.94 2.50
665 673 1.069358 TGATGCGCATATCGGTGGTTA 59.931 47.619 25.40 0.00 38.94 2.85
671 679 0.994995 GCTAGTGATGCGCATATCGG 59.005 55.000 25.40 16.52 38.94 4.18
680 688 1.734465 GTGTGTTGAGGCTAGTGATGC 59.266 52.381 0.00 0.00 0.00 3.91
723 731 2.626780 GCAAGGTCCTGGAAACGCC 61.627 63.158 0.00 0.00 37.10 5.68
736 744 1.580845 CCAACCGAGAAGCAGCAAGG 61.581 60.000 0.00 0.00 0.00 3.61
822 852 3.876320 CCGAGTAGAGGAGTACCAAGTAC 59.124 52.174 0.00 0.00 39.10 2.73
827 857 2.224233 CGATCCGAGTAGAGGAGTACCA 60.224 54.545 0.00 0.00 41.66 3.25
828 858 2.036992 TCGATCCGAGTAGAGGAGTACC 59.963 54.545 0.00 0.00 41.66 3.34
829 859 3.059166 GTCGATCCGAGTAGAGGAGTAC 58.941 54.545 0.00 0.00 41.66 2.73
830 860 2.288091 CGTCGATCCGAGTAGAGGAGTA 60.288 54.545 0.00 0.00 41.66 2.59
831 861 1.538634 CGTCGATCCGAGTAGAGGAGT 60.539 57.143 0.00 0.00 41.66 3.85
832 862 1.141645 CGTCGATCCGAGTAGAGGAG 58.858 60.000 0.00 0.00 41.66 3.69
833 863 0.879400 GCGTCGATCCGAGTAGAGGA 60.879 60.000 0.00 0.00 42.69 3.71
834 864 1.158484 TGCGTCGATCCGAGTAGAGG 61.158 60.000 0.00 0.00 36.23 3.69
835 865 0.233590 CTGCGTCGATCCGAGTAGAG 59.766 60.000 0.00 0.00 36.23 2.43
836 866 1.773054 GCTGCGTCGATCCGAGTAGA 61.773 60.000 0.00 0.00 36.23 2.59
1192 2223 3.876274 TGGAAAGAATCGGAGAGACAG 57.124 47.619 0.00 0.00 43.63 3.51
1251 2557 2.917971 CAAAGTCTCGTCGATCCAACTC 59.082 50.000 0.00 0.00 0.00 3.01
1257 2563 0.815734 TCCCCAAAGTCTCGTCGATC 59.184 55.000 0.00 0.00 0.00 3.69
1262 2568 1.532316 TCCGTCCCCAAAGTCTCGT 60.532 57.895 0.00 0.00 0.00 4.18
1290 2596 4.093998 CAGGCAGGCAGAATTATATTAGCG 59.906 45.833 0.00 0.00 0.00 4.26
1299 2605 2.292267 CGATTACAGGCAGGCAGAATT 58.708 47.619 0.00 0.00 0.00 2.17
1320 2626 3.657398 TCTCAGTATTACGAGACCCCA 57.343 47.619 11.69 0.00 33.37 4.96
1325 2631 3.118482 ACTCCCGTCTCAGTATTACGAGA 60.118 47.826 11.69 11.69 38.89 4.04
1364 2670 1.604593 CACCAACCCTCCAGCCTTG 60.605 63.158 0.00 0.00 0.00 3.61
1372 2678 2.158827 ACAAATTTTGCCACCAACCCTC 60.159 45.455 9.04 0.00 0.00 4.30
1473 2779 5.338137 GCTACCTACCCTGAAACTACATTGT 60.338 44.000 0.00 0.00 0.00 2.71
1503 2809 4.865776 TCGACCAAGCAAAACCAATAAAG 58.134 39.130 0.00 0.00 0.00 1.85
1661 2969 3.607439 AGATTTATCGCGCGTTGATTTG 58.393 40.909 30.98 0.00 0.00 2.32
1671 2979 3.899835 TCGACAACAAGATTTATCGCG 57.100 42.857 0.00 0.00 0.00 5.87
1706 3014 9.959721 ATTAGACAATTTCACATGTACTTACCT 57.040 29.630 0.00 0.00 0.00 3.08
1710 3018 9.897744 CACAATTAGACAATTTCACATGTACTT 57.102 29.630 0.00 0.00 31.82 2.24
1715 3031 6.183359 CGCACACAATTAGACAATTTCACATG 60.183 38.462 0.00 0.00 31.82 3.21
1717 3033 5.211454 CGCACACAATTAGACAATTTCACA 58.789 37.500 0.00 0.00 31.82 3.58
1736 3052 2.549282 CGTACACTGTTGCCGCAC 59.451 61.111 0.00 0.00 0.00 5.34
1740 3056 2.033194 GGAGCCGTACACTGTTGCC 61.033 63.158 0.00 0.00 0.00 4.52
1741 3057 2.033194 GGGAGCCGTACACTGTTGC 61.033 63.158 0.00 0.00 0.00 4.17
1753 3069 1.644509 ATTTTTGAACAGGGGGAGCC 58.355 50.000 0.00 0.00 0.00 4.70
1760 3076 9.878599 CTTATACGCCTTATATTTTTGAACAGG 57.121 33.333 0.00 0.00 0.00 4.00
1888 3319 4.567159 GGTACTAAGCTCTGTAACATGTGC 59.433 45.833 0.00 0.00 0.00 4.57
1934 3370 9.521503 GCCCAAGAGAAAATATTAAAGATGTTC 57.478 33.333 0.00 0.00 0.00 3.18
1935 3371 8.190784 CGCCCAAGAGAAAATATTAAAGATGTT 58.809 33.333 0.00 0.00 0.00 2.71
1936 3372 7.201821 CCGCCCAAGAGAAAATATTAAAGATGT 60.202 37.037 0.00 0.00 0.00 3.06
1938 3374 6.833933 ACCGCCCAAGAGAAAATATTAAAGAT 59.166 34.615 0.00 0.00 0.00 2.40
1939 3375 6.184789 ACCGCCCAAGAGAAAATATTAAAGA 58.815 36.000 0.00 0.00 0.00 2.52
1940 3376 6.451064 ACCGCCCAAGAGAAAATATTAAAG 57.549 37.500 0.00 0.00 0.00 1.85
2059 3575 0.108804 TTAGCAAGAGGGCTTCGTCG 60.109 55.000 0.00 0.00 42.71 5.12
2555 4218 6.481954 AAATCACAGAAATCGTTAGTCCAC 57.518 37.500 0.00 0.00 0.00 4.02
2584 4247 5.057149 ACACTACTCTGCAAAACAAGTAGG 58.943 41.667 17.19 11.68 40.51 3.18
2687 4350 2.093658 TGGCGAGAACAGAGTAATTCCC 60.094 50.000 0.00 0.00 0.00 3.97
2731 4394 9.098355 TCATCTAAAGGAGAAAACGTGATAATG 57.902 33.333 0.00 0.00 37.85 1.90
2732 4395 9.667107 TTCATCTAAAGGAGAAAACGTGATAAT 57.333 29.630 0.00 0.00 37.85 1.28
2764 4429 7.913674 AAGGAAAATTGACAGAGATCAGTAC 57.086 36.000 0.00 0.00 0.00 2.73
3078 4756 7.907045 GCAAACATAGAGAAAGACATATGTGTG 59.093 37.037 14.43 9.12 42.73 3.82
3270 4948 2.124693 CGGGAGAGGCTGGAGTCTC 61.125 68.421 0.00 0.00 46.62 3.36
3316 4994 8.776470 TGCAAAGGTAAATACTAGTTGTGTTAC 58.224 33.333 0.00 5.10 33.44 2.50
3516 5197 6.663523 AGGTAAGTTACATCAGGGGAAAATTG 59.336 38.462 14.81 0.00 0.00 2.32
3546 5227 3.586470 TCTTTTGTAGGGCCTGAAACA 57.414 42.857 18.53 10.30 0.00 2.83
3665 5346 1.616374 CGGTACAAACAAATTGGGGCT 59.384 47.619 0.00 0.00 43.66 5.19
3740 5421 4.142381 ACTTCAGCACAACTCCTTTTTCAC 60.142 41.667 0.00 0.00 0.00 3.18
3776 5457 6.064717 AGCTCCATCGGCTATTCTTTTATTT 58.935 36.000 0.00 0.00 38.36 1.40
3791 5472 4.626042 AGCTCTTAACATTAGCTCCATCG 58.374 43.478 0.00 0.00 42.89 3.84
3817 5498 6.273071 TGTAAGTGTGATGATCTCATAACCG 58.727 40.000 5.41 0.00 36.98 4.44
3832 5513 5.911280 CAGCTGAGTGAAAAATGTAAGTGTG 59.089 40.000 8.42 0.00 0.00 3.82
3833 5514 5.590259 ACAGCTGAGTGAAAAATGTAAGTGT 59.410 36.000 23.35 0.00 0.00 3.55
3895 5576 6.959639 ATGGTATTTTGACAACTGAACACT 57.040 33.333 0.00 0.00 0.00 3.55
4188 5881 8.672815 CAATGTTATTTTGGTCCAAAAACTTGT 58.327 29.630 28.95 16.95 44.68 3.16
4296 5989 1.067669 CAAGCTCGGCTGTCTATAGCA 59.932 52.381 6.01 0.00 45.46 3.49
4298 5991 3.376540 GTTCAAGCTCGGCTGTCTATAG 58.623 50.000 0.00 0.00 39.62 1.31
4300 5993 1.134670 GGTTCAAGCTCGGCTGTCTAT 60.135 52.381 0.00 0.00 39.62 1.98
4309 6002 0.941542 TCCAAAACGGTTCAAGCTCG 59.058 50.000 0.00 0.00 35.57 5.03
4312 6005 1.404035 AGTGTCCAAAACGGTTCAAGC 59.596 47.619 0.00 0.00 35.57 4.01
4313 6006 2.422127 ACAGTGTCCAAAACGGTTCAAG 59.578 45.455 0.00 0.00 35.57 3.02
4314 6007 2.420722 GACAGTGTCCAAAACGGTTCAA 59.579 45.455 12.54 0.00 35.57 2.69
4320 6013 2.285602 CGTTCAGACAGTGTCCAAAACG 60.286 50.000 26.78 26.78 36.61 3.60
4321 6014 2.933906 TCGTTCAGACAGTGTCCAAAAC 59.066 45.455 19.71 18.06 32.18 2.43
4328 6021 4.680110 CGTTTTAGATCGTTCAGACAGTGT 59.320 41.667 0.00 0.00 0.00 3.55
4362 6055 7.339482 GGACTTAAAATACTCCCTCTGTTCAT 58.661 38.462 0.00 0.00 0.00 2.57
4371 6064 4.473922 ACAGGAGGGACTTAAAATACTCCC 59.526 45.833 0.00 0.00 44.24 4.30
4372 6065 5.695424 ACAGGAGGGACTTAAAATACTCC 57.305 43.478 0.00 0.00 41.55 3.85
4409 6102 6.538742 CGTGAAGAGACCCATATTTGTATGTT 59.461 38.462 0.00 0.00 0.00 2.71
4410 6103 6.049149 CGTGAAGAGACCCATATTTGTATGT 58.951 40.000 0.00 0.00 0.00 2.29
4421 6114 0.824595 TTCCGACGTGAAGAGACCCA 60.825 55.000 0.00 0.00 0.00 4.51
4423 6116 2.144482 TTTTCCGACGTGAAGAGACC 57.856 50.000 0.00 0.00 0.00 3.85
4424 6117 3.493503 ACAATTTTCCGACGTGAAGAGAC 59.506 43.478 0.00 0.00 0.00 3.36
4425 6118 3.724374 ACAATTTTCCGACGTGAAGAGA 58.276 40.909 0.00 0.00 0.00 3.10
4426 6119 4.684703 ACTACAATTTTCCGACGTGAAGAG 59.315 41.667 0.00 0.00 0.00 2.85
4427 6120 4.624015 ACTACAATTTTCCGACGTGAAGA 58.376 39.130 0.00 0.00 0.00 2.87
4428 6121 4.985044 ACTACAATTTTCCGACGTGAAG 57.015 40.909 0.00 0.00 0.00 3.02
4431 6124 4.460505 GGAAACTACAATTTTCCGACGTG 58.539 43.478 0.00 0.00 41.98 4.49
4438 6131 7.275560 CGAATGGAATGGGAAACTACAATTTTC 59.724 37.037 0.00 0.00 33.00 2.29
4452 6145 1.599071 CACATCGTCGAATGGAATGGG 59.401 52.381 0.00 0.00 0.00 4.00
4455 6148 2.022764 TGCACATCGTCGAATGGAAT 57.977 45.000 0.00 0.00 0.00 3.01
4456 6149 1.933181 GATGCACATCGTCGAATGGAA 59.067 47.619 0.00 0.00 0.00 3.53
4457 6150 1.136891 AGATGCACATCGTCGAATGGA 59.863 47.619 0.00 2.55 42.48 3.41
4458 6151 1.259770 CAGATGCACATCGTCGAATGG 59.740 52.381 0.00 0.00 42.48 3.16
4467 6160 8.965172 GTATGATTTGAATTTCAGATGCACATC 58.035 33.333 7.12 2.28 38.09 3.06
4498 6191 2.557056 TCTCACTGGTTCCGAGTTACTG 59.443 50.000 0.00 0.00 0.00 2.74
4506 6199 2.484264 GGTCAAATTCTCACTGGTTCCG 59.516 50.000 0.00 0.00 0.00 4.30
4520 6213 4.651503 AGTACCGAGATGATGAGGTCAAAT 59.348 41.667 0.00 0.00 40.97 2.32
4530 6223 6.931838 TCAACACTTAAAGTACCGAGATGAT 58.068 36.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.