Multiple sequence alignment - TraesCS7A01G184500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G184500 chr7A 100.000 6115 0 0 1 6115 138957455 138951341 0.000000e+00 11293.0
1 TraesCS7A01G184500 chr7A 98.945 1611 17 0 4505 6115 138939676 138938066 0.000000e+00 2881.0
2 TraesCS7A01G184500 chr7A 95.214 1191 45 4 3330 4519 138940962 138939783 0.000000e+00 1873.0
3 TraesCS7A01G184500 chr7A 92.467 531 27 4 2268 2797 707915655 707915137 0.000000e+00 747.0
4 TraesCS7A01G184500 chr7A 91.295 448 15 8 2906 3331 707915145 707914700 1.900000e-164 590.0
5 TraesCS7A01G184500 chr7A 94.315 387 15 3 1889 2269 138941336 138940951 2.460000e-163 586.0
6 TraesCS7A01G184500 chr7A 95.082 61 3 0 1889 1949 138944838 138944778 5.050000e-16 97.1
7 TraesCS7A01G184500 chr7B 93.480 2362 103 26 3334 5664 104025796 104023455 0.000000e+00 3461.0
8 TraesCS7A01G184500 chr7B 89.440 786 58 15 1 774 104030100 104029328 0.000000e+00 968.0
9 TraesCS7A01G184500 chr7B 93.737 463 20 5 930 1392 104026865 104026412 0.000000e+00 686.0
10 TraesCS7A01G184500 chr7B 88.314 522 23 9 1749 2267 104026276 104025790 5.280000e-165 592.0
11 TraesCS7A01G184500 chr7B 78.689 427 68 15 2269 2695 424794205 424793802 4.700000e-66 263.0
12 TraesCS7A01G184500 chr7B 81.739 115 17 3 336 449 49192142 49192031 6.530000e-15 93.5
13 TraesCS7A01G184500 chr7B 81.739 115 15 5 332 445 683101576 683101467 2.350000e-14 91.6
14 TraesCS7A01G184500 chr7B 100.000 34 0 0 1405 1438 104558778 104558745 5.120000e-06 63.9
15 TraesCS7A01G184500 chr7B 100.000 33 0 0 1405 1437 594214565 594214533 1.840000e-05 62.1
16 TraesCS7A01G184500 chr7D 94.858 2042 71 12 3334 5373 139011806 139009797 0.000000e+00 3158.0
17 TraesCS7A01G184500 chr7D 84.324 1110 91 41 323 1390 139013531 139012463 0.000000e+00 1009.0
18 TraesCS7A01G184500 chr7D 88.719 523 35 9 1749 2267 139012302 139011800 8.710000e-173 617.0
19 TraesCS7A01G184500 chr7D 84.579 428 54 4 2266 2683 37920242 37919817 1.230000e-111 414.0
20 TraesCS7A01G184500 chr7D 90.402 323 17 6 1 311 139050901 139050581 4.410000e-111 412.0
21 TraesCS7A01G184500 chrUn 98.684 1140 15 0 4505 5644 204108678 204109817 0.000000e+00 2023.0
22 TraesCS7A01G184500 chrUn 95.130 1191 45 5 3330 4519 204107393 204108571 0.000000e+00 1866.0
23 TraesCS7A01G184500 chrUn 100.000 383 0 0 5733 6115 441244758 441245140 0.000000e+00 708.0
24 TraesCS7A01G184500 chrUn 94.560 386 15 3 1889 2269 204107020 204107404 5.280000e-165 592.0
25 TraesCS7A01G184500 chrUn 85.249 583 73 4 2268 2844 54293913 54293338 6.830000e-164 588.0
26 TraesCS7A01G184500 chrUn 94.315 387 15 3 1889 2269 337329437 337329052 2.460000e-163 586.0
27 TraesCS7A01G184500 chrUn 93.897 213 6 2 3330 3542 337329063 337328858 1.280000e-81 315.0
28 TraesCS7A01G184500 chrUn 86.719 128 13 3 3217 3342 292088255 292088130 8.270000e-29 139.0
29 TraesCS7A01G184500 chrUn 86.719 128 13 3 3217 3342 312304830 312304705 8.270000e-29 139.0
30 TraesCS7A01G184500 chrUn 95.082 61 3 0 1889 1949 358466693 358466633 5.050000e-16 97.1
31 TraesCS7A01G184500 chrUn 83.871 93 15 0 353 445 326447913 326447821 8.440000e-14 89.8
32 TraesCS7A01G184500 chr2B 89.985 649 60 5 2262 2908 765565792 765566437 0.000000e+00 833.0
33 TraesCS7A01G184500 chr2B 90.435 115 3 1 3016 3122 765566880 765566994 1.780000e-30 145.0
34 TraesCS7A01G184500 chr2B 83.871 93 15 0 353 445 71381178 71381086 8.440000e-14 89.8
35 TraesCS7A01G184500 chr2A 86.170 376 50 2 2355 2729 601734044 601733670 7.380000e-109 405.0
36 TraesCS7A01G184500 chr2A 83.480 454 52 3 2292 2744 697376894 697377325 9.550000e-108 401.0
37 TraesCS7A01G184500 chr2A 85.127 316 32 13 3029 3333 601733115 601732804 5.950000e-80 309.0
38 TraesCS7A01G184500 chr2A 82.336 351 27 13 3016 3334 697380421 697380768 7.810000e-69 272.0
39 TraesCS7A01G184500 chr2A 90.351 114 11 0 1593 1706 609739602 609739489 3.820000e-32 150.0
40 TraesCS7A01G184500 chr2A 81.250 176 27 4 3170 3344 669888653 669888483 2.970000e-28 137.0
41 TraesCS7A01G184500 chr6A 89.326 178 15 3 3167 3343 178866105 178866279 2.870000e-53 220.0
42 TraesCS7A01G184500 chr4B 91.228 114 10 0 1593 1706 562580530 562580417 8.210000e-34 156.0
43 TraesCS7A01G184500 chr4B 79.695 197 36 4 2259 2452 105159967 105160162 8.270000e-29 139.0
44 TraesCS7A01G184500 chr2D 83.815 173 17 9 1583 1746 101687167 101687337 2.950000e-33 154.0
45 TraesCS7A01G184500 chr2D 81.657 169 18 10 1593 1751 572680091 572680256 1.790000e-25 128.0
46 TraesCS7A01G184500 chr2D 100.000 34 0 0 1405 1438 533780264 533780297 5.120000e-06 63.9
47 TraesCS7A01G184500 chr2D 100.000 34 0 0 1392 1425 569306956 569306923 5.120000e-06 63.9
48 TraesCS7A01G184500 chr2D 95.000 40 1 1 1391 1429 82141345 82141306 1.840000e-05 62.1
49 TraesCS7A01G184500 chr5D 88.618 123 14 0 1584 1706 553054857 553054735 3.820000e-32 150.0
50 TraesCS7A01G184500 chr5D 82.143 112 15 4 335 445 68696887 68696994 2.350000e-14 91.6
51 TraesCS7A01G184500 chr5D 84.043 94 12 3 353 445 365693395 365693304 3.040000e-13 87.9
52 TraesCS7A01G184500 chr5B 84.049 163 18 4 1593 1747 463372320 463372158 3.820000e-32 150.0
53 TraesCS7A01G184500 chr3A 87.402 127 12 3 3217 3342 9810623 9810500 6.390000e-30 143.0
54 TraesCS7A01G184500 chr3B 86.719 128 13 3 3217 3342 803325005 803324880 8.270000e-29 139.0
55 TraesCS7A01G184500 chr3B 86.719 128 13 3 3217 3342 803354625 803354500 8.270000e-29 139.0
56 TraesCS7A01G184500 chr3B 80.870 115 22 0 2270 2384 269257030 269256916 2.350000e-14 91.6
57 TraesCS7A01G184500 chr3B 93.333 45 0 2 1383 1425 23927024 23927067 5.120000e-06 63.9
58 TraesCS7A01G184500 chr6B 82.184 174 18 11 1583 1748 14077751 14077919 2.970000e-28 137.0
59 TraesCS7A01G184500 chr6B 100.000 33 0 0 1405 1437 70877402 70877370 1.840000e-05 62.1
60 TraesCS7A01G184500 chr4A 82.500 160 22 3 1593 1746 441762410 441762251 1.070000e-27 135.0
61 TraesCS7A01G184500 chr4A 82.099 162 20 6 1593 1747 250740970 250741129 4.970000e-26 130.0
62 TraesCS7A01G184500 chr1A 82.500 120 21 0 2269 2388 251937820 251937701 8.380000e-19 106.0
63 TraesCS7A01G184500 chr1A 75.610 164 28 12 1592 1750 21461134 21460978 3.060000e-08 71.3
64 TraesCS7A01G184500 chr3D 81.197 117 18 4 2270 2384 187841340 187841226 2.350000e-14 91.6
65 TraesCS7A01G184500 chr3D 81.982 111 15 4 336 445 68912135 68912241 8.440000e-14 89.8
66 TraesCS7A01G184500 chr3D 100.000 33 0 0 1393 1425 516076149 516076117 1.840000e-05 62.1
67 TraesCS7A01G184500 chr3D 93.023 43 2 1 1384 1425 593246251 593246209 1.840000e-05 62.1
68 TraesCS7A01G184500 chr4D 80.000 115 20 2 336 450 477738864 477738753 1.410000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G184500 chr7A 138951341 138957455 6114 True 11293.000000 11293 100.000000 1 6115 1 chr7A.!!$R1 6114
1 TraesCS7A01G184500 chr7A 138938066 138944838 6772 True 1359.275000 2881 95.889000 1889 6115 4 chr7A.!!$R2 4226
2 TraesCS7A01G184500 chr7A 707914700 707915655 955 True 668.500000 747 91.881000 2268 3331 2 chr7A.!!$R3 1063
3 TraesCS7A01G184500 chr7B 104023455 104030100 6645 True 1426.750000 3461 91.242750 1 5664 4 chr7B.!!$R6 5663
4 TraesCS7A01G184500 chr7D 139009797 139013531 3734 True 1594.666667 3158 89.300333 323 5373 3 chr7D.!!$R3 5050
5 TraesCS7A01G184500 chrUn 204107020 204109817 2797 False 1493.666667 2023 96.124667 1889 5644 3 chrUn.!!$F2 3755
6 TraesCS7A01G184500 chrUn 54293338 54293913 575 True 588.000000 588 85.249000 2268 2844 1 chrUn.!!$R1 576
7 TraesCS7A01G184500 chrUn 337328858 337329437 579 True 450.500000 586 94.106000 1889 3542 2 chrUn.!!$R6 1653
8 TraesCS7A01G184500 chr2B 765565792 765566994 1202 False 489.000000 833 90.210000 2262 3122 2 chr2B.!!$F1 860
9 TraesCS7A01G184500 chr2A 601732804 601734044 1240 True 357.000000 405 85.648500 2355 3333 2 chr2A.!!$R3 978
10 TraesCS7A01G184500 chr2A 697376894 697380768 3874 False 336.500000 401 82.908000 2292 3334 2 chr2A.!!$F1 1042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 397 0.246635 TAGACAGCCGAGCTTGAACC 59.753 55.0 1.22 0.0 36.40 3.62 F
961 3305 0.251354 AATCGCATGAGCACTCCAGT 59.749 50.0 0.00 0.0 42.27 4.00 F
2824 11424 0.039035 GGTGCCATGGTCCCTACAAA 59.961 55.0 14.67 0.0 0.00 2.83 F
2891 11528 0.248377 GTACGTGCACCGGTAGCTAG 60.248 60.0 23.38 19.4 42.24 3.42 F
2903 11540 0.249114 GTAGCTAGCTCGCCAGGTTC 60.249 60.0 23.26 0.0 0.00 3.62 F
2904 11541 0.683179 TAGCTAGCTCGCCAGGTTCA 60.683 55.0 23.26 0.0 0.00 3.18 F
4483 13523 0.725117 CCGTTGGTCTTTCGTATGCC 59.275 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1766 4127 0.318445 CACAAGCTCCAAAGTGCAGC 60.318 55.000 0.00 0.0 34.89 5.25 R
2907 11544 0.459585 ACCAATACGTGTAGCCGCTG 60.460 55.000 2.16 0.0 0.00 5.18 R
4150 13190 1.900981 CATTGCAACCACCACCGGA 60.901 57.895 9.46 0.0 0.00 5.14 R
4468 13508 3.066291 ACAATGGCATACGAAAGACCA 57.934 42.857 0.00 0.0 34.28 4.02 R
4515 13676 7.272515 CACCACAACAAAGTTTTTACACTACAG 59.727 37.037 0.00 0.0 0.00 2.74 R
4563 13724 7.328249 GCGTTCATATTGAAGAGAGGAAGATAG 59.672 40.741 0.00 0.0 37.00 2.08 R
5953 15159 2.303175 TGCACGGTTTTAGGAAGCTTT 58.697 42.857 0.00 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 8.204836 AGCGAAGTATCACTATAGGTTCATTTT 58.795 33.333 4.43 0.00 0.00 1.82
144 145 3.523157 TGACCATGACCACAGTCCAATAT 59.477 43.478 0.00 0.00 42.81 1.28
151 152 4.192317 GACCACAGTCCAATATCCAAGAC 58.808 47.826 0.00 0.00 37.00 3.01
266 276 5.220835 GGAAATTTCCAGCACAAGTTTTTGG 60.221 40.000 28.76 0.00 46.76 3.28
310 320 7.600065 TGTGAGATGTACAAAAGAGGTACTAC 58.400 38.462 0.00 0.00 41.55 2.73
312 322 7.755822 GTGAGATGTACAAAAGAGGTACTACAG 59.244 40.741 0.00 0.00 41.55 2.74
379 389 3.932545 AAGATGCTATAGACAGCCGAG 57.067 47.619 3.21 0.00 41.04 4.63
387 397 0.246635 TAGACAGCCGAGCTTGAACC 59.753 55.000 1.22 0.00 36.40 3.62
395 405 0.941542 CGAGCTTGAACCGTTTTGGA 59.058 50.000 0.00 0.00 42.00 3.53
409 419 2.933906 GTTTTGGACACTGTCTGAACGA 59.066 45.455 9.08 0.00 32.47 3.85
476 486 5.070001 CCCTCCTGTTTGTCTTTTCATACA 58.930 41.667 0.00 0.00 0.00 2.29
494 504 9.693739 TTTCATACAACATACAAATATGGGTCT 57.306 29.630 0.00 0.00 42.32 3.85
495 505 8.902540 TCATACAACATACAAATATGGGTCTC 57.097 34.615 0.00 0.00 42.32 3.36
498 508 7.865706 ACAACATACAAATATGGGTCTCTTC 57.134 36.000 0.00 0.00 42.32 2.87
500 510 7.336931 ACAACATACAAATATGGGTCTCTTCAC 59.663 37.037 0.00 0.00 42.32 3.18
505 515 1.100510 TATGGGTCTCTTCACGTCGG 58.899 55.000 0.00 0.00 0.00 4.79
534 544 2.356135 AGTTTCCCATTCCATTCGACG 58.644 47.619 0.00 0.00 0.00 5.12
546 556 2.195922 CATTCGACGATGTGCATCTGA 58.804 47.619 0.00 3.41 35.72 3.27
587 597 3.005472 CAGTAACTCGGAACCAGTGAGAA 59.995 47.826 0.00 0.00 33.93 2.87
632 642 6.970484 ACTTTAAGTGTTGATAGCAGTTTGG 58.030 36.000 0.00 0.00 32.45 3.28
633 643 5.957842 TTAAGTGTTGATAGCAGTTTGGG 57.042 39.130 0.00 0.00 32.45 4.12
634 644 2.162681 AGTGTTGATAGCAGTTTGGGC 58.837 47.619 0.00 0.00 0.00 5.36
635 645 1.885887 GTGTTGATAGCAGTTTGGGCA 59.114 47.619 0.00 0.00 0.00 5.36
636 646 2.493278 GTGTTGATAGCAGTTTGGGCAT 59.507 45.455 0.00 0.00 0.00 4.40
681 691 2.705658 AGGCTAGTAATGCTGCCACATA 59.294 45.455 12.33 0.00 41.05 2.29
687 697 6.980397 GCTAGTAATGCTGCCACATAAATTTT 59.020 34.615 0.00 0.00 0.00 1.82
698 708 5.349543 GCCACATAAATTTTCAGCTCTTTGG 59.650 40.000 0.00 0.00 0.00 3.28
710 720 1.947456 GCTCTTTGGGACGACACTTTT 59.053 47.619 0.00 0.00 0.00 2.27
715 725 5.369833 TCTTTGGGACGACACTTTTATTGA 58.630 37.500 0.00 0.00 0.00 2.57
754 770 3.401182 TGCAACAGAATTTTGGGCAATC 58.599 40.909 12.95 0.00 32.17 2.67
775 791 2.961522 AACACCTTTGCAACGATACG 57.038 45.000 4.19 0.00 0.00 3.06
776 792 2.157834 ACACCTTTGCAACGATACGA 57.842 45.000 4.19 0.00 0.00 3.43
780 796 1.659098 CCTTTGCAACGATACGACTCC 59.341 52.381 4.19 0.00 0.00 3.85
781 797 1.320555 CTTTGCAACGATACGACTCCG 59.679 52.381 0.00 0.00 42.50 4.63
803 856 4.566759 CGTCATCACCATTTCGTGTATTCT 59.433 41.667 0.00 0.00 35.18 2.40
806 859 6.757010 GTCATCACCATTTCGTGTATTCTACT 59.243 38.462 0.00 0.00 35.18 2.57
807 860 6.978659 TCATCACCATTTCGTGTATTCTACTC 59.021 38.462 0.00 0.00 35.18 2.59
808 861 6.525578 TCACCATTTCGTGTATTCTACTCT 57.474 37.500 0.00 0.00 35.18 3.24
809 862 6.931838 TCACCATTTCGTGTATTCTACTCTT 58.068 36.000 0.00 0.00 35.18 2.85
810 863 8.058667 TCACCATTTCGTGTATTCTACTCTTA 57.941 34.615 0.00 0.00 35.18 2.10
811 864 8.692710 TCACCATTTCGTGTATTCTACTCTTAT 58.307 33.333 0.00 0.00 35.18 1.73
812 865 8.969267 CACCATTTCGTGTATTCTACTCTTATC 58.031 37.037 0.00 0.00 0.00 1.75
813 866 7.861372 ACCATTTCGTGTATTCTACTCTTATCG 59.139 37.037 0.00 0.00 0.00 2.92
814 867 7.148950 CCATTTCGTGTATTCTACTCTTATCGC 60.149 40.741 0.00 0.00 0.00 4.58
845 898 3.254060 ACTGACAGTCGTATGCATGAAC 58.746 45.455 10.16 4.65 0.00 3.18
895 3207 4.124351 CTGCATGCAGCCCGTTGG 62.124 66.667 33.18 9.86 44.83 3.77
950 3294 0.861837 GCCGACCTTCTAATCGCATG 59.138 55.000 0.00 0.00 37.01 4.06
955 3299 2.541762 GACCTTCTAATCGCATGAGCAC 59.458 50.000 0.00 0.00 42.27 4.40
956 3300 2.169352 ACCTTCTAATCGCATGAGCACT 59.831 45.455 0.00 0.00 42.27 4.40
957 3301 2.799412 CCTTCTAATCGCATGAGCACTC 59.201 50.000 0.00 0.00 42.27 3.51
958 3302 2.515926 TCTAATCGCATGAGCACTCC 57.484 50.000 0.00 0.00 42.27 3.85
959 3303 1.756538 TCTAATCGCATGAGCACTCCA 59.243 47.619 0.00 0.00 42.27 3.86
960 3304 2.133553 CTAATCGCATGAGCACTCCAG 58.866 52.381 0.00 0.00 42.27 3.86
961 3305 0.251354 AATCGCATGAGCACTCCAGT 59.749 50.000 0.00 0.00 42.27 4.00
962 3306 1.114627 ATCGCATGAGCACTCCAGTA 58.885 50.000 0.00 0.00 42.27 2.74
981 3328 2.060383 TGGTCAGGCCAGGATCTCG 61.060 63.158 5.01 0.00 43.61 4.04
982 3329 1.758514 GGTCAGGCCAGGATCTCGA 60.759 63.158 5.01 0.00 37.17 4.04
986 3333 2.764128 GGCCAGGATCTCGACCCA 60.764 66.667 0.00 0.00 0.00 4.51
1266 3613 1.153309 CATGGTCCTCATGCTCGCA 60.153 57.895 0.00 0.00 45.58 5.10
1269 3616 3.260483 GTCCTCATGCTCGCAGCG 61.260 66.667 9.06 9.06 46.26 5.18
1339 3686 1.043116 CCGGTGGCATAGGTCTCTGA 61.043 60.000 0.00 0.00 0.00 3.27
1394 3741 6.757897 TCTACAGTTATCTTTTGCAATGGG 57.242 37.500 0.00 0.00 0.00 4.00
1395 3742 6.245408 TCTACAGTTATCTTTTGCAATGGGT 58.755 36.000 0.00 0.00 0.00 4.51
1396 3743 5.138125 ACAGTTATCTTTTGCAATGGGTG 57.862 39.130 0.00 0.00 0.00 4.61
1397 3744 4.588528 ACAGTTATCTTTTGCAATGGGTGT 59.411 37.500 0.00 0.00 0.00 4.16
1398 3745 4.925054 CAGTTATCTTTTGCAATGGGTGTG 59.075 41.667 0.00 0.00 0.00 3.82
1399 3746 4.021192 AGTTATCTTTTGCAATGGGTGTGG 60.021 41.667 0.00 0.00 0.00 4.17
1400 3747 1.786937 TCTTTTGCAATGGGTGTGGT 58.213 45.000 0.00 0.00 0.00 4.16
1401 3748 2.114616 TCTTTTGCAATGGGTGTGGTT 58.885 42.857 0.00 0.00 0.00 3.67
1402 3749 3.300388 TCTTTTGCAATGGGTGTGGTTA 58.700 40.909 0.00 0.00 0.00 2.85
1403 3750 3.320541 TCTTTTGCAATGGGTGTGGTTAG 59.679 43.478 0.00 0.00 0.00 2.34
1404 3751 1.626686 TTGCAATGGGTGTGGTTAGG 58.373 50.000 0.00 0.00 0.00 2.69
1405 3752 0.480690 TGCAATGGGTGTGGTTAGGT 59.519 50.000 0.00 0.00 0.00 3.08
1406 3753 1.173913 GCAATGGGTGTGGTTAGGTC 58.826 55.000 0.00 0.00 0.00 3.85
1407 3754 1.271926 GCAATGGGTGTGGTTAGGTCT 60.272 52.381 0.00 0.00 0.00 3.85
1408 3755 2.711542 CAATGGGTGTGGTTAGGTCTC 58.288 52.381 0.00 0.00 0.00 3.36
1409 3756 2.038863 ATGGGTGTGGTTAGGTCTCA 57.961 50.000 0.00 0.00 0.00 3.27
1410 3757 1.348064 TGGGTGTGGTTAGGTCTCAG 58.652 55.000 0.00 0.00 0.00 3.35
1411 3758 1.349067 GGGTGTGGTTAGGTCTCAGT 58.651 55.000 0.00 0.00 0.00 3.41
1412 3759 1.275573 GGGTGTGGTTAGGTCTCAGTC 59.724 57.143 0.00 0.00 0.00 3.51
1413 3760 1.067776 GGTGTGGTTAGGTCTCAGTCG 60.068 57.143 0.00 0.00 0.00 4.18
1414 3761 1.884579 GTGTGGTTAGGTCTCAGTCGA 59.115 52.381 0.00 0.00 0.00 4.20
1415 3762 1.884579 TGTGGTTAGGTCTCAGTCGAC 59.115 52.381 7.70 7.70 0.00 4.20
1416 3763 2.161030 GTGGTTAGGTCTCAGTCGACT 58.839 52.381 13.58 13.58 34.38 4.18
1417 3764 2.095161 GTGGTTAGGTCTCAGTCGACTG 60.095 54.545 34.76 34.76 45.08 3.51
1431 3778 4.632740 GTCGACTGAGACTTAGCAAAAC 57.367 45.455 8.70 0.00 38.09 2.43
1432 3779 4.299978 GTCGACTGAGACTTAGCAAAACT 58.700 43.478 8.70 0.00 38.09 2.66
1433 3780 4.149046 GTCGACTGAGACTTAGCAAAACTG 59.851 45.833 8.70 0.00 38.09 3.16
1434 3781 4.051922 CGACTGAGACTTAGCAAAACTGT 58.948 43.478 0.00 0.00 0.00 3.55
1435 3782 4.508124 CGACTGAGACTTAGCAAAACTGTT 59.492 41.667 0.00 0.00 0.00 3.16
1436 3783 5.006746 CGACTGAGACTTAGCAAAACTGTTT 59.993 40.000 0.00 0.00 0.00 2.83
1437 3784 6.456988 CGACTGAGACTTAGCAAAACTGTTTT 60.457 38.462 12.50 12.50 0.00 2.43
1458 3805 4.754372 TGCAATTGCTCTGTTCTAGTTG 57.246 40.909 29.37 0.00 42.66 3.16
1459 3806 4.136796 TGCAATTGCTCTGTTCTAGTTGT 58.863 39.130 29.37 0.00 42.66 3.32
1461 3808 4.913924 GCAATTGCTCTGTTCTAGTTGTTG 59.086 41.667 23.21 0.00 38.21 3.33
1464 3817 4.937201 TGCTCTGTTCTAGTTGTTGAGA 57.063 40.909 0.00 0.00 0.00 3.27
1484 3841 4.313522 GAGTATCTCAGCGTGTTTGTTG 57.686 45.455 0.00 0.00 0.00 3.33
1495 3852 4.082679 AGCGTGTTTGTTGTTTTCTTGGTA 60.083 37.500 0.00 0.00 0.00 3.25
1555 3916 5.799681 AACTACTCTACTTCAGTACGAGC 57.200 43.478 0.00 0.00 33.28 5.03
1556 3917 4.829968 ACTACTCTACTTCAGTACGAGCA 58.170 43.478 0.00 2.23 33.28 4.26
1557 3918 5.430007 ACTACTCTACTTCAGTACGAGCAT 58.570 41.667 0.00 1.02 33.28 3.79
1558 3919 6.580788 ACTACTCTACTTCAGTACGAGCATA 58.419 40.000 0.00 1.77 33.28 3.14
1559 3920 7.218614 ACTACTCTACTTCAGTACGAGCATAT 58.781 38.462 0.00 0.00 33.28 1.78
1560 3921 6.548441 ACTCTACTTCAGTACGAGCATATC 57.452 41.667 0.00 0.00 33.28 1.63
1561 3922 6.292923 ACTCTACTTCAGTACGAGCATATCT 58.707 40.000 0.00 0.00 33.28 1.98
1562 3923 7.443477 ACTCTACTTCAGTACGAGCATATCTA 58.557 38.462 0.00 0.00 33.28 1.98
1563 3924 7.932491 ACTCTACTTCAGTACGAGCATATCTAA 59.068 37.037 0.00 0.00 33.28 2.10
1564 3925 8.312896 TCTACTTCAGTACGAGCATATCTAAG 57.687 38.462 0.00 0.00 0.00 2.18
1565 3926 8.148999 TCTACTTCAGTACGAGCATATCTAAGA 58.851 37.037 0.00 0.00 0.00 2.10
1566 3927 7.753309 ACTTCAGTACGAGCATATCTAAGAT 57.247 36.000 0.00 0.00 0.00 2.40
1567 3928 8.172352 ACTTCAGTACGAGCATATCTAAGATT 57.828 34.615 0.00 0.00 0.00 2.40
1568 3929 8.293867 ACTTCAGTACGAGCATATCTAAGATTC 58.706 37.037 0.00 0.00 0.00 2.52
1580 3941 9.202273 GCATATCTAAGATTCTAAGTTGTCCAG 57.798 37.037 0.00 0.00 0.00 3.86
1594 3955 7.454260 AAGTTGTCCAGGAAAAATGAGATAC 57.546 36.000 0.00 0.00 0.00 2.24
1596 3957 6.881602 AGTTGTCCAGGAAAAATGAGATACTC 59.118 38.462 0.00 0.00 0.00 2.59
1597 3958 5.745227 TGTCCAGGAAAAATGAGATACTCC 58.255 41.667 0.00 0.00 0.00 3.85
1598 3959 5.126779 GTCCAGGAAAAATGAGATACTCCC 58.873 45.833 0.00 0.00 0.00 4.30
1599 3960 5.039645 TCCAGGAAAAATGAGATACTCCCT 58.960 41.667 0.00 0.00 0.00 4.20
1600 3961 5.492524 TCCAGGAAAAATGAGATACTCCCTT 59.507 40.000 0.00 0.00 0.00 3.95
1601 3962 5.825151 CCAGGAAAAATGAGATACTCCCTTC 59.175 44.000 0.00 0.00 0.00 3.46
1602 3963 6.418101 CAGGAAAAATGAGATACTCCCTTCA 58.582 40.000 0.00 0.00 0.00 3.02
1603 3964 7.059156 CAGGAAAAATGAGATACTCCCTTCAT 58.941 38.462 0.00 0.00 0.00 2.57
1604 3965 7.559170 CAGGAAAAATGAGATACTCCCTTCATT 59.441 37.037 0.00 0.00 0.00 2.57
1605 3966 8.118600 AGGAAAAATGAGATACTCCCTTCATTT 58.881 33.333 5.69 5.69 38.80 2.32
1606 3967 8.409371 GGAAAAATGAGATACTCCCTTCATTTC 58.591 37.037 10.59 2.63 36.97 2.17
1607 3968 9.183368 GAAAAATGAGATACTCCCTTCATTTCT 57.817 33.333 10.59 0.00 36.97 2.52
1661 4022 8.668510 ATGTACTACATAGGAAGCAAAATGAG 57.331 34.615 0.00 0.00 36.99 2.90
1662 4023 7.620880 TGTACTACATAGGAAGCAAAATGAGT 58.379 34.615 0.00 0.00 0.00 3.41
1663 4024 6.992063 ACTACATAGGAAGCAAAATGAGTG 57.008 37.500 0.00 0.00 0.00 3.51
1664 4025 6.711277 ACTACATAGGAAGCAAAATGAGTGA 58.289 36.000 0.00 0.00 0.00 3.41
1665 4026 7.168219 ACTACATAGGAAGCAAAATGAGTGAA 58.832 34.615 0.00 0.00 0.00 3.18
1666 4027 7.831193 ACTACATAGGAAGCAAAATGAGTGAAT 59.169 33.333 0.00 0.00 0.00 2.57
1667 4028 7.472334 ACATAGGAAGCAAAATGAGTGAATT 57.528 32.000 0.00 0.00 0.00 2.17
1668 4029 7.899973 ACATAGGAAGCAAAATGAGTGAATTT 58.100 30.769 0.00 0.00 0.00 1.82
1669 4030 9.023962 ACATAGGAAGCAAAATGAGTGAATTTA 57.976 29.630 0.00 0.00 0.00 1.40
1670 4031 9.294030 CATAGGAAGCAAAATGAGTGAATTTAC 57.706 33.333 0.00 0.00 0.00 2.01
1671 4032 7.288810 AGGAAGCAAAATGAGTGAATTTACA 57.711 32.000 2.93 0.00 0.00 2.41
1672 4033 7.147976 AGGAAGCAAAATGAGTGAATTTACAC 58.852 34.615 2.93 0.00 40.60 2.90
1686 4047 9.950496 AGTGAATTTACACTCTGAAATATGTCT 57.050 29.630 2.93 0.00 46.36 3.41
1716 4077 6.821031 ATCCGTATGTAGTCTATCTCCAAC 57.179 41.667 0.00 0.00 0.00 3.77
1717 4078 5.687780 TCCGTATGTAGTCTATCTCCAACA 58.312 41.667 0.00 0.00 0.00 3.33
1718 4079 6.124340 TCCGTATGTAGTCTATCTCCAACAA 58.876 40.000 0.00 0.00 0.00 2.83
1719 4080 6.262496 TCCGTATGTAGTCTATCTCCAACAAG 59.738 42.308 0.00 0.00 0.00 3.16
1720 4081 6.262496 CCGTATGTAGTCTATCTCCAACAAGA 59.738 42.308 0.00 0.00 0.00 3.02
1721 4082 7.133513 CGTATGTAGTCTATCTCCAACAAGAC 58.866 42.308 0.00 0.00 38.90 3.01
1723 4084 7.726033 ATGTAGTCTATCTCCAACAAGACTT 57.274 36.000 8.94 0.00 44.81 3.01
1724 4085 8.824756 ATGTAGTCTATCTCCAACAAGACTTA 57.175 34.615 8.94 1.02 44.81 2.24
1725 4086 8.824756 TGTAGTCTATCTCCAACAAGACTTAT 57.175 34.615 8.94 0.00 44.81 1.73
1726 4087 9.916360 TGTAGTCTATCTCCAACAAGACTTATA 57.084 33.333 8.94 0.00 44.81 0.98
1734 4095 9.905713 ATCTCCAACAAGACTTATATTTAGCAA 57.094 29.630 0.00 0.00 0.00 3.91
1735 4096 9.905713 TCTCCAACAAGACTTATATTTAGCAAT 57.094 29.630 0.00 0.00 0.00 3.56
1736 4097 9.941664 CTCCAACAAGACTTATATTTAGCAATG 57.058 33.333 0.00 0.00 0.00 2.82
1737 4098 9.679661 TCCAACAAGACTTATATTTAGCAATGA 57.320 29.630 0.00 0.00 0.00 2.57
1741 4102 9.125026 ACAAGACTTATATTTAGCAATGAAGGG 57.875 33.333 0.00 0.00 0.00 3.95
1742 4103 9.342308 CAAGACTTATATTTAGCAATGAAGGGA 57.658 33.333 0.00 0.00 0.00 4.20
1743 4104 9.566432 AAGACTTATATTTAGCAATGAAGGGAG 57.434 33.333 0.00 0.00 0.00 4.30
1744 4105 8.718656 AGACTTATATTTAGCAATGAAGGGAGT 58.281 33.333 0.00 0.00 0.00 3.85
1745 4106 9.998106 GACTTATATTTAGCAATGAAGGGAGTA 57.002 33.333 0.00 0.00 0.00 2.59
1747 4108 8.848474 TTATATTTAGCAATGAAGGGAGTAGC 57.152 34.615 0.00 0.00 0.00 3.58
1751 4112 3.973425 AGCAATGAAGGGAGTAGCATTT 58.027 40.909 0.00 0.00 0.00 2.32
1766 4127 4.410492 AGCATTTAAGTTTGCACTCTCG 57.590 40.909 9.04 0.00 41.35 4.04
1767 4128 2.911102 GCATTTAAGTTTGCACTCTCGC 59.089 45.455 0.00 0.00 38.72 5.03
1810 4176 2.096819 TGGTTGTTGCTTCAAGTTCGTC 59.903 45.455 0.00 0.00 0.00 4.20
1811 4177 2.096819 GGTTGTTGCTTCAAGTTCGTCA 59.903 45.455 0.00 0.00 0.00 4.35
1812 4178 3.098636 GTTGTTGCTTCAAGTTCGTCAC 58.901 45.455 0.00 0.00 0.00 3.67
1813 4179 2.627945 TGTTGCTTCAAGTTCGTCACT 58.372 42.857 0.00 0.00 37.30 3.41
1816 4182 4.083003 TGTTGCTTCAAGTTCGTCACTTTT 60.083 37.500 0.68 0.00 43.89 2.27
1817 4183 4.014847 TGCTTCAAGTTCGTCACTTTTG 57.985 40.909 0.68 0.00 43.89 2.44
1818 4184 3.181501 TGCTTCAAGTTCGTCACTTTTGG 60.182 43.478 0.68 0.00 43.89 3.28
1819 4185 3.792124 GCTTCAAGTTCGTCACTTTTGGG 60.792 47.826 0.68 0.00 43.89 4.12
1820 4186 2.993937 TCAAGTTCGTCACTTTTGGGT 58.006 42.857 0.68 0.00 43.89 4.51
1821 4187 3.349022 TCAAGTTCGTCACTTTTGGGTT 58.651 40.909 0.68 0.00 43.89 4.11
1822 4188 4.515361 TCAAGTTCGTCACTTTTGGGTTA 58.485 39.130 0.68 0.00 43.89 2.85
1823 4189 4.333372 TCAAGTTCGTCACTTTTGGGTTAC 59.667 41.667 0.68 0.00 43.89 2.50
1824 4190 3.876341 AGTTCGTCACTTTTGGGTTACA 58.124 40.909 0.00 0.00 27.32 2.41
1825 4191 3.624410 AGTTCGTCACTTTTGGGTTACAC 59.376 43.478 0.00 0.00 27.32 2.90
1826 4192 3.263489 TCGTCACTTTTGGGTTACACA 57.737 42.857 0.00 0.00 0.00 3.72
1827 4193 3.811083 TCGTCACTTTTGGGTTACACAT 58.189 40.909 0.00 0.00 0.00 3.21
1828 4194 3.810941 TCGTCACTTTTGGGTTACACATC 59.189 43.478 0.00 0.00 0.00 3.06
1829 4195 3.562141 CGTCACTTTTGGGTTACACATCA 59.438 43.478 0.00 0.00 0.00 3.07
1830 4196 4.035792 CGTCACTTTTGGGTTACACATCAA 59.964 41.667 0.00 0.00 0.00 2.57
1831 4197 5.278604 GTCACTTTTGGGTTACACATCAAC 58.721 41.667 0.00 0.00 0.00 3.18
1832 4198 5.067283 GTCACTTTTGGGTTACACATCAACT 59.933 40.000 0.00 0.00 0.00 3.16
1833 4199 5.654650 TCACTTTTGGGTTACACATCAACTT 59.345 36.000 0.00 0.00 0.00 2.66
1834 4200 6.829298 TCACTTTTGGGTTACACATCAACTTA 59.171 34.615 0.00 0.00 0.00 2.24
1835 4201 7.504238 TCACTTTTGGGTTACACATCAACTTAT 59.496 33.333 0.00 0.00 0.00 1.73
1836 4202 7.594758 CACTTTTGGGTTACACATCAACTTATG 59.405 37.037 0.00 0.00 0.00 1.90
1853 4219 9.967451 TCAACTTATGACTTATCCCAATACAAA 57.033 29.630 0.00 0.00 31.50 2.83
1919 4285 6.194235 TGGATAGAATTAATGGTGCTTTGGT 58.806 36.000 0.00 0.00 0.00 3.67
1935 7803 5.656416 TGCTTTGGTTTGGATAGGAAATAGG 59.344 40.000 0.00 0.00 0.00 2.57
2182 8058 7.743116 TGTGATCTATTTTACCTTAGGGTCA 57.257 36.000 0.00 0.00 45.98 4.02
2190 8066 2.361085 ACCTTAGGGTCAGGTTCCAT 57.639 50.000 2.32 0.00 42.45 3.41
2194 8070 3.245264 CCTTAGGGTCAGGTTCCATTGTT 60.245 47.826 0.00 0.00 0.00 2.83
2209 8085 6.048732 TCCATTGTTAGACTCACATAAGCA 57.951 37.500 0.00 0.00 0.00 3.91
2260 8136 5.705441 TCATGTAAAGAATTTCCTGCGTCTT 59.295 36.000 0.00 0.00 40.09 3.01
2261 8137 6.206634 TCATGTAAAGAATTTCCTGCGTCTTT 59.793 34.615 0.00 0.00 41.79 2.52
2262 8138 7.389330 TCATGTAAAGAATTTCCTGCGTCTTTA 59.611 33.333 0.00 0.00 40.08 1.85
2265 8141 6.635030 AAAGAATTTCCTGCGTCTTTACTT 57.365 33.333 0.00 0.00 38.28 2.24
2266 8142 6.635030 AAGAATTTCCTGCGTCTTTACTTT 57.365 33.333 0.00 0.00 0.00 2.66
2338 8214 2.301009 GGTCCCTTAACTCTGAAACCGA 59.699 50.000 0.00 0.00 0.00 4.69
2361 8237 6.072673 CGAATAAGTTGCACCCTTAACTCTTT 60.073 38.462 8.63 0.34 36.19 2.52
2372 8248 5.221986 ACCCTTAACTCTTTAAACCGGACAT 60.222 40.000 9.46 0.00 0.00 3.06
2380 8256 4.211794 TCTTTAAACCGGACATGTTTCGTC 59.788 41.667 9.46 0.00 37.18 4.20
2391 8268 2.992124 TGTTTCGTCCCTTGACTCAA 57.008 45.000 0.00 0.00 39.47 3.02
2393 8270 1.525619 GTTTCGTCCCTTGACTCAACG 59.474 52.381 0.00 0.00 39.47 4.10
2484 8362 5.641155 TCTATCATCCTATCTCCGGTCAAA 58.359 41.667 0.00 0.00 0.00 2.69
2535 8424 4.742201 CCACCGGCACCAGAGACG 62.742 72.222 0.00 0.00 0.00 4.18
2645 8540 3.056458 CACGAGGTACCTGTGGCA 58.944 61.111 22.10 0.00 0.00 4.92
2710 8605 3.716195 CCCATCTCCACGCCCACA 61.716 66.667 0.00 0.00 0.00 4.17
2819 11419 4.033776 CGTGGTGCCATGGTCCCT 62.034 66.667 14.67 0.00 0.00 4.20
2824 11424 0.039035 GGTGCCATGGTCCCTACAAA 59.961 55.000 14.67 0.00 0.00 2.83
2828 11428 1.562475 GCCATGGTCCCTACAAAGGTA 59.438 52.381 14.67 0.00 41.89 3.08
2891 11528 0.248377 GTACGTGCACCGGTAGCTAG 60.248 60.000 23.38 19.40 42.24 3.42
2892 11529 1.996786 TACGTGCACCGGTAGCTAGC 61.997 60.000 23.38 13.03 42.24 3.42
2896 11533 2.026301 CACCGGTAGCTAGCTCGC 59.974 66.667 23.26 15.30 0.00 5.03
2900 11537 2.731374 GGTAGCTAGCTCGCCAGG 59.269 66.667 23.26 0.00 0.00 4.45
2902 11539 1.677637 GGTAGCTAGCTCGCCAGGTT 61.678 60.000 23.26 0.00 0.00 3.50
2903 11540 0.249114 GTAGCTAGCTCGCCAGGTTC 60.249 60.000 23.26 0.00 0.00 3.62
2904 11541 0.683179 TAGCTAGCTCGCCAGGTTCA 60.683 55.000 23.26 0.00 0.00 3.18
2906 11543 1.142748 CTAGCTCGCCAGGTTCAGG 59.857 63.158 0.00 0.00 0.00 3.86
3154 12169 2.104170 AGGATGAGAAGGACGAAGGAC 58.896 52.381 0.00 0.00 0.00 3.85
3156 12171 1.743958 GATGAGAAGGACGAAGGACGA 59.256 52.381 0.00 0.00 45.77 4.20
3259 12298 6.478512 TTGAAGAATTAAGGGTGCAACTTT 57.521 33.333 3.95 3.95 36.74 2.66
3260 12299 6.478512 TGAAGAATTAAGGGTGCAACTTTT 57.521 33.333 3.74 0.48 36.74 2.27
3277 12316 4.490743 ACTTTTGTCCGGTTTTGAAGTTG 58.509 39.130 0.00 0.00 0.00 3.16
3301 12340 2.158885 GGACCAAATCTAGACTCTGCCC 60.159 54.545 0.00 0.00 0.00 5.36
3365 12404 7.944414 ATTGCCTATAAGATATAGGGATGCT 57.056 36.000 19.88 7.20 40.91 3.79
3446 12485 5.929415 TCATGTATTCGAGTGTTTAGTGCAA 59.071 36.000 0.00 0.00 0.00 4.08
3447 12486 5.839262 TGTATTCGAGTGTTTAGTGCAAG 57.161 39.130 0.00 0.00 0.00 4.01
3448 12487 5.294356 TGTATTCGAGTGTTTAGTGCAAGT 58.706 37.500 0.00 0.00 0.00 3.16
3449 12488 4.732285 ATTCGAGTGTTTAGTGCAAGTG 57.268 40.909 0.00 0.00 0.00 3.16
3450 12489 1.864711 TCGAGTGTTTAGTGCAAGTGC 59.135 47.619 0.00 0.00 42.50 4.40
3469 12508 7.574404 GCAAGTGCAATACATCATACTGCATAT 60.574 37.037 0.00 0.00 44.20 1.78
3794 12834 6.469410 TCGGACCATAACATTTGTTTCTACT 58.531 36.000 0.63 0.00 39.31 2.57
3806 12846 9.965902 ACATTTGTTTCTACTATTCTTCCATCT 57.034 29.630 0.00 0.00 0.00 2.90
4107 13147 6.520742 GCTTCCTAATAGACATATTGAGGCCA 60.521 42.308 5.01 0.00 33.58 5.36
4254 13294 5.185454 TGTGTTGTCATCTTCACAGAACTT 58.815 37.500 0.00 0.00 36.17 2.66
4312 13352 6.312141 TGATATGAAATTGACTCACCAGGA 57.688 37.500 0.00 0.00 0.00 3.86
4410 13450 5.104360 TCTGCATTAGCCTTAGAGGTGATTT 60.104 40.000 0.00 0.00 41.13 2.17
4416 13456 5.707066 AGCCTTAGAGGTGATTTCTCAAT 57.293 39.130 0.00 0.00 37.80 2.57
4468 13508 1.295423 CCATCGACCAGTTCCCGTT 59.705 57.895 0.00 0.00 0.00 4.44
4483 13523 0.725117 CCGTTGGTCTTTCGTATGCC 59.275 55.000 0.00 0.00 0.00 4.40
4515 13676 8.196771 TGCATTTATACCATTCATTGTCTTTCC 58.803 33.333 0.00 0.00 0.00 3.13
4563 13724 4.997395 TGAAGACTTCAGCTTGGTGTTATC 59.003 41.667 13.99 0.00 34.08 1.75
4616 13777 5.028375 GCTACATTCGGACAGTTTTTATGC 58.972 41.667 0.00 0.00 0.00 3.14
5036 14198 2.039084 GACCTTCTCACAGGGTGTCATT 59.961 50.000 0.00 0.00 38.42 2.57
5953 15159 1.896220 AAATGTTCGGAAGCTGCTGA 58.104 45.000 1.35 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 7.370905 ACTATTGATTCCTGTCATGATCTCA 57.629 36.000 0.00 0.00 0.00 3.27
255 265 8.672815 CAATGTTATTTTGGTCCAAAAACTTGT 58.327 29.630 28.95 16.95 44.68 3.16
266 276 9.643693 ATCTCACAAATCAATGTTATTTTGGTC 57.356 29.630 0.00 0.00 34.23 4.02
296 306 7.088905 ACACGTAATCTGTAGTACCTCTTTTG 58.911 38.462 0.00 0.00 0.00 2.44
363 373 1.067669 CAAGCTCGGCTGTCTATAGCA 59.932 52.381 6.01 0.00 45.46 3.49
365 375 3.376540 GTTCAAGCTCGGCTGTCTATAG 58.623 50.000 0.00 0.00 39.62 1.31
367 377 1.134670 GGTTCAAGCTCGGCTGTCTAT 60.135 52.381 0.00 0.00 39.62 1.98
376 386 0.941542 TCCAAAACGGTTCAAGCTCG 59.058 50.000 0.00 0.00 35.57 5.03
379 389 1.404035 AGTGTCCAAAACGGTTCAAGC 59.596 47.619 0.00 0.00 35.57 4.01
387 397 2.285602 CGTTCAGACAGTGTCCAAAACG 60.286 50.000 26.78 26.78 36.61 3.60
395 405 4.680110 CGTTTTAGATCGTTCAGACAGTGT 59.320 41.667 0.00 0.00 0.00 3.55
476 486 6.538742 CGTGAAGAGACCCATATTTGTATGTT 59.461 38.462 0.00 0.00 0.00 2.71
488 498 0.824595 TTCCGACGTGAAGAGACCCA 60.825 55.000 0.00 0.00 0.00 4.51
490 500 2.144482 TTTTCCGACGTGAAGAGACC 57.856 50.000 0.00 0.00 0.00 3.85
491 501 3.493503 ACAATTTTCCGACGTGAAGAGAC 59.506 43.478 0.00 0.00 0.00 3.36
492 502 3.724374 ACAATTTTCCGACGTGAAGAGA 58.276 40.909 0.00 0.00 0.00 3.10
493 503 4.684703 ACTACAATTTTCCGACGTGAAGAG 59.315 41.667 0.00 0.00 0.00 2.85
494 504 4.624015 ACTACAATTTTCCGACGTGAAGA 58.376 39.130 0.00 0.00 0.00 2.87
495 505 4.985044 ACTACAATTTTCCGACGTGAAG 57.015 40.909 0.00 0.00 0.00 3.02
498 508 4.460505 GGAAACTACAATTTTCCGACGTG 58.539 43.478 0.00 0.00 41.98 4.49
505 515 7.275560 CGAATGGAATGGGAAACTACAATTTTC 59.724 37.037 0.00 0.00 33.00 2.29
534 544 8.965172 GTATGATTTGAATTTCAGATGCACATC 58.035 33.333 7.12 2.28 38.09 3.06
573 583 2.484264 GGTCAAATTCTCACTGGTTCCG 59.516 50.000 0.00 0.00 0.00 4.30
587 597 4.651503 AGTACCGAGATGATGAGGTCAAAT 59.348 41.667 0.00 0.00 40.97 2.32
667 677 5.811613 GCTGAAAATTTATGTGGCAGCATTA 59.188 36.000 0.00 0.00 44.72 1.90
681 691 3.888930 TCGTCCCAAAGAGCTGAAAATTT 59.111 39.130 0.00 0.00 0.00 1.82
687 697 0.033504 GTGTCGTCCCAAAGAGCTGA 59.966 55.000 0.00 0.00 0.00 4.26
698 708 7.186021 TCTTTTCTCAATAAAAGTGTCGTCC 57.814 36.000 8.46 0.00 43.72 4.79
710 720 6.409704 CAGAGGTGGTGATCTTTTCTCAATA 58.590 40.000 0.00 0.00 0.00 1.90
715 725 2.373169 TGCAGAGGTGGTGATCTTTTCT 59.627 45.455 0.00 0.00 0.00 2.52
721 737 1.002430 TCTGTTGCAGAGGTGGTGATC 59.998 52.381 0.00 0.00 35.39 2.92
754 770 3.676172 TCGTATCGTTGCAAAGGTGTTAG 59.324 43.478 12.54 0.00 32.62 2.34
776 792 2.930887 CACGAAATGGTGATGACGGAGT 60.931 50.000 0.00 0.00 42.28 3.85
780 796 4.566759 AGAATACACGAAATGGTGATGACG 59.433 41.667 2.45 0.00 40.38 4.35
781 797 6.757010 AGTAGAATACACGAAATGGTGATGAC 59.243 38.462 2.45 0.00 46.26 3.06
782 798 6.873997 AGTAGAATACACGAAATGGTGATGA 58.126 36.000 2.45 0.00 46.26 2.92
783 799 6.980978 AGAGTAGAATACACGAAATGGTGATG 59.019 38.462 2.45 0.00 46.26 3.07
784 800 7.113658 AGAGTAGAATACACGAAATGGTGAT 57.886 36.000 2.45 0.00 46.26 3.06
785 801 6.525578 AGAGTAGAATACACGAAATGGTGA 57.474 37.500 2.45 0.00 46.26 4.02
786 802 8.873215 ATAAGAGTAGAATACACGAAATGGTG 57.127 34.615 0.00 0.00 46.26 4.17
787 803 7.861372 CGATAAGAGTAGAATACACGAAATGGT 59.139 37.037 0.00 0.00 46.26 3.55
788 804 7.148950 GCGATAAGAGTAGAATACACGAAATGG 60.149 40.741 0.00 0.00 46.26 3.16
790 806 6.577800 CGCGATAAGAGTAGAATACACGAAAT 59.422 38.462 0.00 0.00 46.26 2.17
803 856 6.025896 CAGTTAACAGTTCGCGATAAGAGTA 58.974 40.000 10.88 0.00 0.00 2.59
806 859 4.855388 GTCAGTTAACAGTTCGCGATAAGA 59.145 41.667 10.88 0.00 0.00 2.10
807 860 4.619760 TGTCAGTTAACAGTTCGCGATAAG 59.380 41.667 10.88 5.02 0.00 1.73
808 861 4.548494 TGTCAGTTAACAGTTCGCGATAA 58.452 39.130 10.88 1.64 0.00 1.75
809 862 4.163458 TGTCAGTTAACAGTTCGCGATA 57.837 40.909 10.88 0.00 0.00 2.92
810 863 2.987149 CTGTCAGTTAACAGTTCGCGAT 59.013 45.455 10.88 0.00 41.43 4.58
811 864 2.390938 CTGTCAGTTAACAGTTCGCGA 58.609 47.619 3.71 3.71 41.43 5.87
812 865 2.837337 CTGTCAGTTAACAGTTCGCG 57.163 50.000 8.61 0.00 41.43 5.87
922 3234 2.358247 AAGGTCGGCGTCGCATTT 60.358 55.556 20.50 2.48 36.13 2.32
923 3235 1.940883 TAGAAGGTCGGCGTCGCATT 61.941 55.000 20.50 3.60 36.13 3.56
924 3236 1.940883 TTAGAAGGTCGGCGTCGCAT 61.941 55.000 20.50 0.00 36.13 4.73
925 3237 1.940883 ATTAGAAGGTCGGCGTCGCA 61.941 55.000 20.50 0.00 36.13 5.10
950 3294 1.137872 CCTGACCATACTGGAGTGCTC 59.862 57.143 0.00 0.00 40.96 4.26
955 3299 2.607811 TGGCCTGACCATACTGGAG 58.392 57.895 3.32 0.00 46.36 3.86
956 3300 4.908333 TGGCCTGACCATACTGGA 57.092 55.556 3.32 0.00 46.36 3.86
966 3310 1.758514 GGTCGAGATCCTGGCCTGA 60.759 63.158 11.88 4.43 0.00 3.86
1252 3599 3.260483 CGCTGCGAGCATGAGGAC 61.260 66.667 18.66 0.00 42.58 3.85
1339 3686 8.826765 TCTGGAAGAGGATAACTAGAATTTGTT 58.173 33.333 0.00 0.00 38.67 2.83
1368 3715 8.253113 CCCATTGCAAAAGATAACTGTAGAATT 58.747 33.333 1.71 0.00 0.00 2.17
1392 3739 1.275573 GACTGAGACCTAACCACACCC 59.724 57.143 0.00 0.00 0.00 4.61
1393 3740 1.067776 CGACTGAGACCTAACCACACC 60.068 57.143 0.00 0.00 0.00 4.16
1394 3741 1.884579 TCGACTGAGACCTAACCACAC 59.115 52.381 0.00 0.00 0.00 3.82
1395 3742 1.884579 GTCGACTGAGACCTAACCACA 59.115 52.381 8.70 0.00 35.22 4.17
1396 3743 2.095161 CAGTCGACTGAGACCTAACCAC 60.095 54.545 36.73 0.00 46.59 4.16
1397 3744 2.160205 CAGTCGACTGAGACCTAACCA 58.840 52.381 36.73 0.00 46.59 3.67
1398 3745 2.923605 CAGTCGACTGAGACCTAACC 57.076 55.000 36.73 0.00 46.59 2.85
1408 3755 3.560902 TTGCTAAGTCTCAGTCGACTG 57.439 47.619 34.76 34.76 43.14 3.51
1409 3756 4.038162 AGTTTTGCTAAGTCTCAGTCGACT 59.962 41.667 13.58 13.58 45.73 4.18
1410 3757 4.149046 CAGTTTTGCTAAGTCTCAGTCGAC 59.851 45.833 7.70 7.70 0.00 4.20
1411 3758 4.202121 ACAGTTTTGCTAAGTCTCAGTCGA 60.202 41.667 0.00 0.00 0.00 4.20
1412 3759 4.051922 ACAGTTTTGCTAAGTCTCAGTCG 58.948 43.478 0.00 0.00 0.00 4.18
1413 3760 5.993106 AACAGTTTTGCTAAGTCTCAGTC 57.007 39.130 0.00 0.00 0.00 3.51
1414 3761 6.555315 CAAAACAGTTTTGCTAAGTCTCAGT 58.445 36.000 22.74 0.00 42.91 3.41
1427 3774 4.937015 ACAGAGCAATTGCAAAACAGTTTT 59.063 33.333 30.89 5.37 45.16 2.43
1428 3775 4.506758 ACAGAGCAATTGCAAAACAGTTT 58.493 34.783 30.89 7.98 45.16 2.66
1429 3776 4.127566 ACAGAGCAATTGCAAAACAGTT 57.872 36.364 30.89 8.75 45.16 3.16
1430 3777 3.806625 ACAGAGCAATTGCAAAACAGT 57.193 38.095 30.89 17.81 45.16 3.55
1431 3778 4.365723 AGAACAGAGCAATTGCAAAACAG 58.634 39.130 30.89 17.26 45.16 3.16
1432 3779 4.389890 AGAACAGAGCAATTGCAAAACA 57.610 36.364 30.89 0.00 45.16 2.83
1433 3780 5.523369 ACTAGAACAGAGCAATTGCAAAAC 58.477 37.500 30.89 18.27 45.16 2.43
1434 3781 5.772825 ACTAGAACAGAGCAATTGCAAAA 57.227 34.783 30.89 7.47 45.16 2.44
1435 3782 5.067674 ACAACTAGAACAGAGCAATTGCAAA 59.932 36.000 30.89 6.97 45.16 3.68
1436 3783 4.580167 ACAACTAGAACAGAGCAATTGCAA 59.420 37.500 30.89 0.00 45.16 4.08
1437 3784 4.136796 ACAACTAGAACAGAGCAATTGCA 58.863 39.130 30.89 7.88 45.16 4.08
1438 3785 4.756084 ACAACTAGAACAGAGCAATTGC 57.244 40.909 23.05 23.05 42.49 3.56
1439 3786 6.203530 TCTCAACAACTAGAACAGAGCAATTG 59.796 38.462 0.00 0.00 0.00 2.32
1440 3787 6.291377 TCTCAACAACTAGAACAGAGCAATT 58.709 36.000 0.00 0.00 0.00 2.32
1441 3788 5.858381 TCTCAACAACTAGAACAGAGCAAT 58.142 37.500 0.00 0.00 0.00 3.56
1442 3789 5.163405 ACTCTCAACAACTAGAACAGAGCAA 60.163 40.000 0.00 0.00 30.92 3.91
1461 3808 3.839293 ACAAACACGCTGAGATACTCTC 58.161 45.455 0.00 0.00 43.65 3.20
1464 3817 3.728845 ACAACAAACACGCTGAGATACT 58.271 40.909 0.00 0.00 0.00 2.12
1480 3837 7.386851 TGGACAATTTTACCAAGAAAACAACA 58.613 30.769 0.00 0.00 31.35 3.33
1484 3841 7.708752 TGACATGGACAATTTTACCAAGAAAAC 59.291 33.333 0.00 0.00 37.24 2.43
1495 3852 4.949238 TGGATCGATGACATGGACAATTTT 59.051 37.500 0.54 0.00 0.00 1.82
1532 3889 6.401394 TGCTCGTACTGAAGTAGAGTAGTTA 58.599 40.000 13.61 0.00 32.94 2.24
1540 3897 8.312896 TCTTAGATATGCTCGTACTGAAGTAG 57.687 38.462 0.00 0.00 0.00 2.57
1551 3912 9.123709 GACAACTTAGAATCTTAGATATGCTCG 57.876 37.037 3.05 0.00 0.00 5.03
1552 3913 9.418045 GGACAACTTAGAATCTTAGATATGCTC 57.582 37.037 3.05 0.00 0.00 4.26
1553 3914 8.928448 TGGACAACTTAGAATCTTAGATATGCT 58.072 33.333 3.05 0.00 0.00 3.79
1554 3915 9.202273 CTGGACAACTTAGAATCTTAGATATGC 57.798 37.037 3.05 0.00 0.00 3.14
1555 3916 9.703892 CCTGGACAACTTAGAATCTTAGATATG 57.296 37.037 3.05 2.46 0.00 1.78
1556 3917 9.661954 TCCTGGACAACTTAGAATCTTAGATAT 57.338 33.333 3.05 0.00 0.00 1.63
1557 3918 9.488762 TTCCTGGACAACTTAGAATCTTAGATA 57.511 33.333 3.05 0.00 0.00 1.98
1558 3919 7.979786 TCCTGGACAACTTAGAATCTTAGAT 57.020 36.000 3.05 0.00 0.00 1.98
1559 3920 7.792364 TTCCTGGACAACTTAGAATCTTAGA 57.208 36.000 3.05 0.00 0.00 2.10
1560 3921 8.848474 TTTTCCTGGACAACTTAGAATCTTAG 57.152 34.615 0.00 0.00 0.00 2.18
1561 3922 9.807921 ATTTTTCCTGGACAACTTAGAATCTTA 57.192 29.630 0.00 0.00 0.00 2.10
1562 3923 8.579863 CATTTTTCCTGGACAACTTAGAATCTT 58.420 33.333 0.00 0.00 0.00 2.40
1563 3924 7.944554 TCATTTTTCCTGGACAACTTAGAATCT 59.055 33.333 0.00 0.00 0.00 2.40
1564 3925 8.110860 TCATTTTTCCTGGACAACTTAGAATC 57.889 34.615 0.00 0.00 0.00 2.52
1565 3926 7.944554 TCTCATTTTTCCTGGACAACTTAGAAT 59.055 33.333 0.00 0.00 0.00 2.40
1566 3927 7.287061 TCTCATTTTTCCTGGACAACTTAGAA 58.713 34.615 0.00 0.00 0.00 2.10
1567 3928 6.837312 TCTCATTTTTCCTGGACAACTTAGA 58.163 36.000 0.00 0.00 0.00 2.10
1568 3929 7.693969 ATCTCATTTTTCCTGGACAACTTAG 57.306 36.000 0.00 0.00 0.00 2.18
1580 3941 7.888250 AATGAAGGGAGTATCTCATTTTTCC 57.112 36.000 0.00 0.00 38.91 3.13
1635 3996 9.764363 CTCATTTTGCTTCCTATGTAGTACATA 57.236 33.333 19.52 19.52 39.88 2.29
1636 3997 8.267894 ACTCATTTTGCTTCCTATGTAGTACAT 58.732 33.333 19.36 19.36 42.35 2.29
1637 3998 7.549134 CACTCATTTTGCTTCCTATGTAGTACA 59.451 37.037 5.24 5.24 0.00 2.90
1638 3999 7.764443 TCACTCATTTTGCTTCCTATGTAGTAC 59.236 37.037 0.00 0.00 0.00 2.73
1639 4000 7.847096 TCACTCATTTTGCTTCCTATGTAGTA 58.153 34.615 0.00 0.00 0.00 1.82
1640 4001 6.711277 TCACTCATTTTGCTTCCTATGTAGT 58.289 36.000 0.00 0.00 0.00 2.73
1641 4002 7.615582 TTCACTCATTTTGCTTCCTATGTAG 57.384 36.000 0.00 0.00 0.00 2.74
1642 4003 8.579850 AATTCACTCATTTTGCTTCCTATGTA 57.420 30.769 0.00 0.00 0.00 2.29
1643 4004 7.472334 AATTCACTCATTTTGCTTCCTATGT 57.528 32.000 0.00 0.00 0.00 2.29
1644 4005 9.294030 GTAAATTCACTCATTTTGCTTCCTATG 57.706 33.333 0.00 0.00 0.00 2.23
1645 4006 9.023962 TGTAAATTCACTCATTTTGCTTCCTAT 57.976 29.630 0.00 0.00 0.00 2.57
1646 4007 8.296713 GTGTAAATTCACTCATTTTGCTTCCTA 58.703 33.333 0.00 0.00 35.68 2.94
1647 4008 7.014615 AGTGTAAATTCACTCATTTTGCTTCCT 59.985 33.333 0.00 0.00 44.07 3.36
1648 4009 7.147976 AGTGTAAATTCACTCATTTTGCTTCC 58.852 34.615 0.00 0.00 44.07 3.46
1690 4051 9.610705 GTTGGAGATAGACTACATACGGATATA 57.389 37.037 0.00 0.00 39.45 0.86
1691 4052 8.107729 TGTTGGAGATAGACTACATACGGATAT 58.892 37.037 0.00 0.00 39.45 1.63
1692 4053 7.455891 TGTTGGAGATAGACTACATACGGATA 58.544 38.462 0.00 0.00 39.45 2.59
1693 4054 6.304624 TGTTGGAGATAGACTACATACGGAT 58.695 40.000 0.00 0.00 39.45 4.18
1694 4055 5.687780 TGTTGGAGATAGACTACATACGGA 58.312 41.667 0.00 0.00 39.45 4.69
1695 4056 6.262496 TCTTGTTGGAGATAGACTACATACGG 59.738 42.308 0.00 0.00 39.45 4.02
1696 4057 7.012515 AGTCTTGTTGGAGATAGACTACATACG 59.987 40.741 0.00 0.00 43.99 3.06
1697 4058 8.228035 AGTCTTGTTGGAGATAGACTACATAC 57.772 38.462 0.00 0.00 43.99 2.39
1698 4059 8.824756 AAGTCTTGTTGGAGATAGACTACATA 57.175 34.615 0.00 0.00 44.79 2.29
1699 4060 7.726033 AAGTCTTGTTGGAGATAGACTACAT 57.274 36.000 0.00 0.00 44.79 2.29
1700 4061 8.824756 ATAAGTCTTGTTGGAGATAGACTACA 57.175 34.615 0.00 0.00 44.79 2.74
1708 4069 9.905713 TTGCTAAATATAAGTCTTGTTGGAGAT 57.094 29.630 0.00 0.00 0.00 2.75
1709 4070 9.905713 ATTGCTAAATATAAGTCTTGTTGGAGA 57.094 29.630 0.00 0.00 0.00 3.71
1710 4071 9.941664 CATTGCTAAATATAAGTCTTGTTGGAG 57.058 33.333 0.00 0.00 0.00 3.86
1711 4072 9.679661 TCATTGCTAAATATAAGTCTTGTTGGA 57.320 29.630 0.00 0.00 0.00 3.53
1715 4076 9.125026 CCCTTCATTGCTAAATATAAGTCTTGT 57.875 33.333 0.00 0.00 0.00 3.16
1716 4077 9.342308 TCCCTTCATTGCTAAATATAAGTCTTG 57.658 33.333 0.00 0.00 0.00 3.02
1717 4078 9.566432 CTCCCTTCATTGCTAAATATAAGTCTT 57.434 33.333 0.00 0.00 0.00 3.01
1718 4079 8.718656 ACTCCCTTCATTGCTAAATATAAGTCT 58.281 33.333 0.00 0.00 0.00 3.24
1719 4080 8.910351 ACTCCCTTCATTGCTAAATATAAGTC 57.090 34.615 0.00 0.00 0.00 3.01
1721 4082 8.940952 GCTACTCCCTTCATTGCTAAATATAAG 58.059 37.037 0.00 0.00 0.00 1.73
1722 4083 8.436778 TGCTACTCCCTTCATTGCTAAATATAA 58.563 33.333 0.00 0.00 0.00 0.98
1723 4084 7.973402 TGCTACTCCCTTCATTGCTAAATATA 58.027 34.615 0.00 0.00 0.00 0.86
1724 4085 6.841601 TGCTACTCCCTTCATTGCTAAATAT 58.158 36.000 0.00 0.00 0.00 1.28
1725 4086 6.247229 TGCTACTCCCTTCATTGCTAAATA 57.753 37.500 0.00 0.00 0.00 1.40
1726 4087 5.116084 TGCTACTCCCTTCATTGCTAAAT 57.884 39.130 0.00 0.00 0.00 1.40
1727 4088 4.568072 TGCTACTCCCTTCATTGCTAAA 57.432 40.909 0.00 0.00 0.00 1.85
1728 4089 4.778213 ATGCTACTCCCTTCATTGCTAA 57.222 40.909 0.00 0.00 0.00 3.09
1729 4090 4.778213 AATGCTACTCCCTTCATTGCTA 57.222 40.909 0.00 0.00 0.00 3.49
1730 4091 3.659183 AATGCTACTCCCTTCATTGCT 57.341 42.857 0.00 0.00 0.00 3.91
1731 4092 5.358160 ACTTAAATGCTACTCCCTTCATTGC 59.642 40.000 0.00 0.00 30.47 3.56
1732 4093 7.396540 AACTTAAATGCTACTCCCTTCATTG 57.603 36.000 0.00 0.00 30.47 2.82
1733 4094 7.577616 GCAAACTTAAATGCTACTCCCTTCATT 60.578 37.037 0.00 0.00 39.46 2.57
1734 4095 6.127619 GCAAACTTAAATGCTACTCCCTTCAT 60.128 38.462 0.00 0.00 39.46 2.57
1735 4096 5.183140 GCAAACTTAAATGCTACTCCCTTCA 59.817 40.000 0.00 0.00 39.46 3.02
1736 4097 5.183140 TGCAAACTTAAATGCTACTCCCTTC 59.817 40.000 8.48 0.00 42.97 3.46
1737 4098 5.048013 GTGCAAACTTAAATGCTACTCCCTT 60.048 40.000 0.00 0.00 42.97 3.95
1738 4099 4.459337 GTGCAAACTTAAATGCTACTCCCT 59.541 41.667 0.00 0.00 42.97 4.20
1739 4100 4.459337 AGTGCAAACTTAAATGCTACTCCC 59.541 41.667 0.00 0.00 42.97 4.30
1740 4101 5.412904 AGAGTGCAAACTTAAATGCTACTCC 59.587 40.000 20.70 12.39 43.62 3.85
1741 4102 6.487689 AGAGTGCAAACTTAAATGCTACTC 57.512 37.500 18.95 18.95 43.31 2.59
1742 4103 5.120830 CGAGAGTGCAAACTTAAATGCTACT 59.879 40.000 0.00 9.29 42.97 2.57
1743 4104 5.316770 CGAGAGTGCAAACTTAAATGCTAC 58.683 41.667 0.00 5.92 42.97 3.58
1744 4105 4.142902 GCGAGAGTGCAAACTTAAATGCTA 60.143 41.667 0.00 0.00 42.97 3.49
1745 4106 3.365364 GCGAGAGTGCAAACTTAAATGCT 60.365 43.478 0.00 0.00 42.97 3.79
1746 4107 2.911102 GCGAGAGTGCAAACTTAAATGC 59.089 45.455 0.00 0.00 42.86 3.56
1747 4108 4.153986 CAGCGAGAGTGCAAACTTAAATG 58.846 43.478 0.00 0.00 37.31 2.32
1751 4112 1.148310 GCAGCGAGAGTGCAAACTTA 58.852 50.000 0.00 0.00 40.86 2.24
1766 4127 0.318445 CACAAGCTCCAAAGTGCAGC 60.318 55.000 0.00 0.00 34.89 5.25
1767 4128 3.859650 CACAAGCTCCAAAGTGCAG 57.140 52.632 0.00 0.00 34.89 4.41
1810 4176 5.514274 AGTTGATGTGTAACCCAAAAGTG 57.486 39.130 0.00 0.00 34.36 3.16
1811 4177 7.504238 TCATAAGTTGATGTGTAACCCAAAAGT 59.496 33.333 0.00 0.00 34.36 2.66
1812 4178 7.807907 GTCATAAGTTGATGTGTAACCCAAAAG 59.192 37.037 0.00 0.00 36.54 2.27
1813 4179 7.504238 AGTCATAAGTTGATGTGTAACCCAAAA 59.496 33.333 0.00 0.00 36.54 2.44
1814 4180 7.001674 AGTCATAAGTTGATGTGTAACCCAAA 58.998 34.615 0.00 0.00 36.54 3.28
1816 4182 6.121776 AGTCATAAGTTGATGTGTAACCCA 57.878 37.500 0.00 0.00 36.54 4.51
1817 4183 8.732746 ATAAGTCATAAGTTGATGTGTAACCC 57.267 34.615 0.00 0.00 36.54 4.11
1818 4184 8.827677 GGATAAGTCATAAGTTGATGTGTAACC 58.172 37.037 0.00 0.00 36.54 2.85
1819 4185 8.827677 GGGATAAGTCATAAGTTGATGTGTAAC 58.172 37.037 0.00 0.00 36.54 2.50
1820 4186 8.544622 TGGGATAAGTCATAAGTTGATGTGTAA 58.455 33.333 0.00 0.00 36.54 2.41
1821 4187 8.084985 TGGGATAAGTCATAAGTTGATGTGTA 57.915 34.615 0.00 0.00 36.54 2.90
1822 4188 6.957631 TGGGATAAGTCATAAGTTGATGTGT 58.042 36.000 0.00 0.00 36.54 3.72
1823 4189 7.864108 TTGGGATAAGTCATAAGTTGATGTG 57.136 36.000 0.00 0.00 36.54 3.21
1824 4190 9.561069 GTATTGGGATAAGTCATAAGTTGATGT 57.439 33.333 0.00 0.00 36.54 3.06
1825 4191 9.559732 TGTATTGGGATAAGTCATAAGTTGATG 57.440 33.333 0.00 0.00 36.54 3.07
1827 4193 9.967451 TTTGTATTGGGATAAGTCATAAGTTGA 57.033 29.630 0.00 0.00 0.00 3.18
1853 4219 3.197766 TGTCTTGAGCCAATCGTCCTAAT 59.802 43.478 0.00 0.00 0.00 1.73
1944 7812 9.084533 ACAATTGCAGTTTATAACTCCCTTTTA 57.915 29.630 5.05 0.00 40.46 1.52
2182 8058 4.974645 TGTGAGTCTAACAATGGAACCT 57.025 40.909 0.00 0.00 0.00 3.50
2190 8066 9.750125 CATATACTGCTTATGTGAGTCTAACAA 57.250 33.333 0.00 0.00 32.31 2.83
2194 8070 8.478775 AACCATATACTGCTTATGTGAGTCTA 57.521 34.615 4.82 0.00 32.31 2.59
2296 8172 5.385198 ACCAAATCTAGACTTTGCCAAGAA 58.615 37.500 4.25 0.00 33.27 2.52
2338 8214 8.700439 TTAAAGAGTTAAGGGTGCAACTTATT 57.300 30.769 0.00 0.00 35.17 1.40
2361 8237 2.415776 GGACGAAACATGTCCGGTTTA 58.584 47.619 20.01 0.00 45.82 2.01
2380 8256 1.532868 CTGCTTTCGTTGAGTCAAGGG 59.467 52.381 21.91 10.81 31.27 3.95
2391 8268 1.680338 AGCCTGAAAACTGCTTTCGT 58.320 45.000 0.00 0.00 45.59 3.85
2393 8270 5.772521 TGATTTAGCCTGAAAACTGCTTTC 58.227 37.500 0.00 0.00 43.33 2.62
2484 8362 1.539388 TGCCAATTGCTCGACGAAATT 59.461 42.857 0.00 0.09 42.00 1.82
2535 8424 4.835927 CAGGTATGCCTCCGTGTC 57.164 61.111 0.00 0.00 44.97 3.67
2710 8605 2.496817 GCGGCGGAGAGACTCATT 59.503 61.111 9.78 0.00 31.08 2.57
2819 11419 3.132289 CCGAGATGAGCCTTACCTTTGTA 59.868 47.826 0.00 0.00 0.00 2.41
2824 11424 1.403687 GCCCGAGATGAGCCTTACCT 61.404 60.000 0.00 0.00 0.00 3.08
2828 11428 3.854669 CCGCCCGAGATGAGCCTT 61.855 66.667 0.00 0.00 0.00 4.35
2900 11537 2.047274 TGTAGCCGCTGCCTGAAC 60.047 61.111 2.16 0.00 38.69 3.18
2902 11539 4.435436 CGTGTAGCCGCTGCCTGA 62.435 66.667 2.16 0.00 38.69 3.86
2903 11540 2.629050 ATACGTGTAGCCGCTGCCTG 62.629 60.000 2.16 0.00 38.69 4.85
2904 11541 1.956629 AATACGTGTAGCCGCTGCCT 61.957 55.000 2.16 0.00 38.69 4.75
2906 11543 1.636340 CAATACGTGTAGCCGCTGC 59.364 57.895 2.16 1.45 37.95 5.25
2907 11544 0.459585 ACCAATACGTGTAGCCGCTG 60.460 55.000 2.16 0.00 0.00 5.18
3154 12169 3.868757 TTGACCAGTAGATGTCCTTCG 57.131 47.619 0.00 0.00 0.00 3.79
3155 12170 4.695928 GGTTTTGACCAGTAGATGTCCTTC 59.304 45.833 0.00 0.00 0.00 3.46
3156 12171 4.104102 TGGTTTTGACCAGTAGATGTCCTT 59.896 41.667 0.00 0.00 34.33 3.36
3259 12298 2.685897 CCTCAACTTCAAAACCGGACAA 59.314 45.455 9.46 0.00 0.00 3.18
3260 12299 2.294074 CCTCAACTTCAAAACCGGACA 58.706 47.619 9.46 0.00 0.00 4.02
3277 12316 3.181470 GCAGAGTCTAGATTTGGTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
3365 12404 0.847373 TGTTGCCAAGGACCAAGGTA 59.153 50.000 0.00 0.00 0.00 3.08
3431 12470 2.300623 GCACTTGCACTAAACACTCG 57.699 50.000 0.00 0.00 41.59 4.18
3446 12485 7.813645 CAATATGCAGTATGATGTATTGCACT 58.186 34.615 7.28 0.00 46.20 4.40
3449 12488 5.735892 CGCAATATGCAGTATGATGTATTGC 59.264 40.000 20.01 20.01 46.50 3.56
3450 12489 5.735892 GCGCAATATGCAGTATGATGTATTG 59.264 40.000 0.30 7.68 45.36 1.90
3451 12490 5.645067 AGCGCAATATGCAGTATGATGTATT 59.355 36.000 11.47 0.00 45.36 1.89
3469 12508 0.525761 GCATGTCCCTAAAAGCGCAA 59.474 50.000 11.47 0.00 0.00 4.85
3472 12511 1.164411 TGTGCATGTCCCTAAAAGCG 58.836 50.000 0.00 0.00 0.00 4.68
3475 12514 5.185454 CAGAGTATGTGCATGTCCCTAAAA 58.815 41.667 0.00 0.00 0.00 1.52
3794 12834 2.511218 AGGCCTTGCAGATGGAAGAATA 59.489 45.455 14.81 0.00 44.86 1.75
3806 12846 3.225798 GCACACCAAGGCCTTGCA 61.226 61.111 35.85 0.00 39.16 4.08
4122 13162 4.535781 TCACCAAATGATACCATGAAGGG 58.464 43.478 0.00 0.00 34.99 3.95
4128 13168 7.039784 CCGGATTTATTCACCAAATGATACCAT 60.040 37.037 0.00 0.00 37.11 3.55
4150 13190 1.900981 CATTGCAACCACCACCGGA 60.901 57.895 9.46 0.00 0.00 5.14
4410 13450 4.574674 AACTGCAAGACCCATATTGAGA 57.425 40.909 0.00 0.00 37.43 3.27
4416 13456 3.585289 TGGACTTAACTGCAAGACCCATA 59.415 43.478 2.81 0.00 38.92 2.74
4468 13508 3.066291 ACAATGGCATACGAAAGACCA 57.934 42.857 0.00 0.00 34.28 4.02
4483 13523 9.100554 ACAATGAATGGTATAAATGCAACAATG 57.899 29.630 0.00 0.00 0.00 2.82
4515 13676 7.272515 CACCACAACAAAGTTTTTACACTACAG 59.727 37.037 0.00 0.00 0.00 2.74
4563 13724 7.328249 GCGTTCATATTGAAGAGAGGAAGATAG 59.672 40.741 0.00 0.00 37.00 2.08
5036 14198 9.801873 GTAATCATAAAAGCAGCAAAGGATAAA 57.198 29.630 0.00 0.00 0.00 1.40
5953 15159 2.303175 TGCACGGTTTTAGGAAGCTTT 58.697 42.857 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.