Multiple sequence alignment - TraesCS7A01G184200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G184200 chr7A 100.000 4253 0 0 1 4253 138658464 138662716 0.000000e+00 7854.0
1 TraesCS7A01G184200 chr7A 96.970 33 1 0 3407 3439 138661831 138661863 5.940000e-04 56.5
2 TraesCS7A01G184200 chr7A 96.970 33 1 0 3368 3400 138661870 138661902 5.940000e-04 56.5
3 TraesCS7A01G184200 chr5D 88.125 2779 143 80 706 3393 507376456 507379138 0.000000e+00 3131.0
4 TraesCS7A01G184200 chr5D 95.526 380 17 0 1 380 538277359 538276980 3.640000e-170 608.0
5 TraesCS7A01G184200 chr5D 88.136 118 12 2 2955 3071 232618716 232618600 5.730000e-29 139.0
6 TraesCS7A01G184200 chr5B 90.000 2500 99 67 986 3404 637387097 637389526 0.000000e+00 3092.0
7 TraesCS7A01G184200 chr5B 88.136 118 12 2 2955 3071 272195171 272195287 5.730000e-29 139.0
8 TraesCS7A01G184200 chr5B 96.970 33 1 0 3407 3439 637389490 637389522 5.940000e-04 56.5
9 TraesCS7A01G184200 chr4A 95.801 381 16 0 1 381 159498086 159498466 2.170000e-172 616.0
10 TraesCS7A01G184200 chr4A 91.760 267 20 1 3981 4245 666479758 666479492 1.870000e-98 370.0
11 TraesCS7A01G184200 chr4A 92.857 238 17 0 378 615 159498644 159498881 3.150000e-91 346.0
12 TraesCS7A01G184200 chr2D 95.538 381 16 1 1 380 95192838 95192458 3.640000e-170 608.0
13 TraesCS7A01G184200 chr2D 95.263 380 17 1 1 380 651097064 651096686 6.080000e-168 601.0
14 TraesCS7A01G184200 chr1B 95.526 380 17 0 1 380 51293646 51294025 3.640000e-170 608.0
15 TraesCS7A01G184200 chr1B 86.837 509 60 5 3716 4218 557395759 557396266 2.870000e-156 562.0
16 TraesCS7A01G184200 chr1B 88.482 382 25 3 3875 4253 132928563 132928928 1.090000e-120 444.0
17 TraesCS7A01G184200 chrUn 95.263 380 18 0 1 380 55787676 55788055 1.690000e-168 603.0
18 TraesCS7A01G184200 chrUn 95.263 380 18 0 1 380 302514081 302513702 1.690000e-168 603.0
19 TraesCS7A01G184200 chrUn 92.437 238 18 0 378 615 55788234 55788471 1.460000e-89 340.0
20 TraesCS7A01G184200 chrUn 92.116 241 19 0 378 618 302513523 302513283 1.460000e-89 340.0
21 TraesCS7A01G184200 chrUn 91.701 241 20 0 378 618 444582215 444581975 6.810000e-88 335.0
22 TraesCS7A01G184200 chr6D 95.263 380 18 0 1 380 210137352 210136973 1.690000e-168 603.0
23 TraesCS7A01G184200 chr3D 95.000 380 19 0 1 380 175448446 175448067 7.870000e-167 597.0
24 TraesCS7A01G184200 chr3D 91.286 241 21 0 378 618 572319481 572319241 3.170000e-86 329.0
25 TraesCS7A01G184200 chr3D 100.000 28 0 0 3683 3710 274316179 274316206 8.000000e-03 52.8
26 TraesCS7A01G184200 chr7B 86.796 515 60 6 3710 4218 577301047 577300535 6.170000e-158 568.0
27 TraesCS7A01G184200 chr7B 85.475 537 61 11 3724 4253 333744333 333744859 1.040000e-150 544.0
28 TraesCS7A01G184200 chr6A 87.315 473 51 6 3786 4250 7368320 7367849 2.250000e-147 532.0
29 TraesCS7A01G184200 chr2B 88.578 429 33 10 3832 4253 615555498 615555917 1.360000e-139 507.0
30 TraesCS7A01G184200 chr2B 88.578 429 34 9 3832 4253 637450362 637450782 1.360000e-139 507.0
31 TraesCS7A01G184200 chr2B 87.696 382 28 3 3875 4253 682179531 682179166 1.090000e-115 427.0
32 TraesCS7A01G184200 chr5A 87.435 382 28 4 3875 4253 437405516 437405152 5.080000e-114 422.0
33 TraesCS7A01G184200 chr5A 87.500 120 12 2 2955 3071 322615599 322615718 7.420000e-28 135.0
34 TraesCS7A01G184200 chr7D 91.701 241 20 0 378 618 634082047 634081807 6.810000e-88 335.0
35 TraesCS7A01G184200 chr7D 80.952 252 34 6 3475 3712 571729002 571729253 2.020000e-43 187.0
36 TraesCS7A01G184200 chr7D 80.952 252 30 11 3475 3710 519689971 519690220 2.610000e-42 183.0
37 TraesCS7A01G184200 chr3B 91.701 241 20 0 378 618 584199853 584199613 6.810000e-88 335.0
38 TraesCS7A01G184200 chr3B 92.017 238 19 0 378 615 797017865 797018102 6.810000e-88 335.0
39 TraesCS7A01G184200 chr3B 84.615 78 11 1 3475 3552 747703782 747703706 4.560000e-10 76.8
40 TraesCS7A01G184200 chr3A 91.701 241 20 0 378 618 260211086 260210846 6.810000e-88 335.0
41 TraesCS7A01G184200 chr1D 90.566 159 7 5 4098 4253 226861557 226861710 2.000000e-48 204.0
42 TraesCS7A01G184200 chr1D 91.753 97 7 1 3923 4019 226861450 226861545 2.670000e-27 134.0
43 TraesCS7A01G184200 chr4D 79.457 258 39 6 3475 3718 477649436 477649179 2.030000e-38 171.0
44 TraesCS7A01G184200 chr4B 83.444 151 22 3 3570 3718 495396614 495396465 2.060000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G184200 chr7A 138658464 138662716 4252 False 2655.666667 7854 97.9800 1 4253 3 chr7A.!!$F1 4252
1 TraesCS7A01G184200 chr5D 507376456 507379138 2682 False 3131.000000 3131 88.1250 706 3393 1 chr5D.!!$F1 2687
2 TraesCS7A01G184200 chr5B 637387097 637389526 2429 False 1574.250000 3092 93.4850 986 3439 2 chr5B.!!$F2 2453
3 TraesCS7A01G184200 chr4A 159498086 159498881 795 False 481.000000 616 94.3290 1 615 2 chr4A.!!$F1 614
4 TraesCS7A01G184200 chr1B 557395759 557396266 507 False 562.000000 562 86.8370 3716 4218 1 chr1B.!!$F3 502
5 TraesCS7A01G184200 chrUn 55787676 55788471 795 False 471.500000 603 93.8500 1 615 2 chrUn.!!$F1 614
6 TraesCS7A01G184200 chrUn 302513283 302514081 798 True 471.500000 603 93.6895 1 618 2 chrUn.!!$R2 617
7 TraesCS7A01G184200 chr7B 577300535 577301047 512 True 568.000000 568 86.7960 3710 4218 1 chr7B.!!$R1 508
8 TraesCS7A01G184200 chr7B 333744333 333744859 526 False 544.000000 544 85.4750 3724 4253 1 chr7B.!!$F1 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 929 0.180171 TTCCCACACCACACACTCTG 59.820 55.0 0.00 0.0 0.00 3.35 F
754 936 0.180406 ACCACACACTCTGGACCAAC 59.820 55.0 0.00 0.0 32.55 3.77 F
1323 1552 0.394352 AAATGACGTCCTGATGCCCC 60.394 55.0 14.12 0.0 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1795 2027 0.248702 GAGTCAAGCTCGACGATCCC 60.249 60.0 0.00 0.0 40.98 3.85 R
2667 2955 0.462047 CCTTGCACATCCGGTACCTC 60.462 60.0 10.90 0.0 0.00 3.85 R
3282 3586 0.294887 CATACGAGAACGCGCAAGAC 59.705 55.0 5.73 0.0 43.96 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.354368 GAGGACCAATCTTCCACCCAA 59.646 52.381 0.00 0.00 35.33 4.12
26 27 3.230134 CCAATCTTCCACCCAAAGACAA 58.770 45.455 0.00 0.00 35.68 3.18
135 136 5.160607 TCGGTATCCCCAAATATGTGATC 57.839 43.478 0.00 0.00 0.00 2.92
145 146 5.532406 CCCAAATATGTGATCGGAAACTGAT 59.468 40.000 0.00 0.00 0.00 2.90
167 168 0.953960 AACCCGCATCCGAACAGTTC 60.954 55.000 2.85 2.85 36.29 3.01
169 170 1.635663 CCCGCATCCGAACAGTTCAC 61.636 60.000 13.82 0.00 36.29 3.18
224 225 7.587392 GCCAAAGCAAAACAATTCACTTTTATC 59.413 33.333 0.00 0.00 39.53 1.75
270 271 5.814783 AGTTGCTCGAATGCTGATAAAATC 58.185 37.500 0.00 0.00 0.00 2.17
308 309 3.740321 GCTTTCTCGAGATGATCATCCAC 59.260 47.826 28.23 21.42 38.58 4.02
349 350 7.384439 TCGGCATATTGAAGTATAGAGAGAG 57.616 40.000 0.00 0.00 0.00 3.20
393 575 1.522355 CCCATAGCGTGCCACTCTG 60.522 63.158 0.00 0.00 0.00 3.35
396 578 1.020861 CATAGCGTGCCACTCTGCAA 61.021 55.000 0.00 0.00 44.11 4.08
397 579 0.742281 ATAGCGTGCCACTCTGCAAG 60.742 55.000 0.00 0.00 44.11 4.01
402 584 1.267806 CGTGCCACTCTGCAAGAAATT 59.732 47.619 0.00 0.00 46.34 1.82
413 595 8.509690 CACTCTGCAAGAAATTCTTTCATTCTA 58.490 33.333 8.39 0.00 46.34 2.10
414 596 9.240734 ACTCTGCAAGAAATTCTTTCATTCTAT 57.759 29.630 8.39 0.00 46.34 1.98
466 648 7.555965 ACTTTGTCATAAGCCTTTTCAAAGTT 58.444 30.769 15.88 7.30 45.71 2.66
496 678 5.771165 TGAGTACCACCCCATTTAACTTTTC 59.229 40.000 0.00 0.00 0.00 2.29
512 694 3.192633 ACTTTTCCCGGTGTAATTCATGC 59.807 43.478 0.00 0.00 0.00 4.06
537 719 7.651808 CACTGTTTCATGAAGGATAACAACTT 58.348 34.615 8.41 0.00 0.00 2.66
554 736 7.482169 AACAACTTCATCTAGGATGTGTCTA 57.518 36.000 7.30 0.00 0.00 2.59
564 746 4.679373 AGGATGTGTCTACCTTGCATAG 57.321 45.455 0.00 0.00 0.00 2.23
567 749 5.189736 AGGATGTGTCTACCTTGCATAGAAA 59.810 40.000 0.00 0.00 30.52 2.52
576 758 5.483685 ACCTTGCATAGAAACTGTCTGTA 57.516 39.130 0.00 0.00 37.12 2.74
587 769 1.692519 ACTGTCTGTAAAGGCCGAACT 59.307 47.619 0.00 0.00 0.00 3.01
615 797 7.113658 TGTTCAACAACCAAATTTAGCCTAA 57.886 32.000 0.00 0.00 0.00 2.69
618 800 9.699703 GTTCAACAACCAAATTTAGCCTAATAA 57.300 29.630 0.00 0.00 0.00 1.40
623 805 9.665719 ACAACCAAATTTAGCCTAATAAAATGG 57.334 29.630 0.00 10.46 39.36 3.16
624 806 8.611757 CAACCAAATTTAGCCTAATAAAATGGC 58.388 33.333 11.35 0.00 46.42 4.40
631 813 3.917988 GCCTAATAAAATGGCTCCATGC 58.082 45.455 1.59 0.00 43.05 4.06
632 814 3.321682 GCCTAATAAAATGGCTCCATGCA 59.678 43.478 1.59 0.00 45.15 3.96
633 815 4.020839 GCCTAATAAAATGGCTCCATGCAT 60.021 41.667 1.59 0.00 45.15 3.96
634 816 5.717119 CCTAATAAAATGGCTCCATGCATC 58.283 41.667 0.00 0.00 45.15 3.91
635 817 3.928727 ATAAAATGGCTCCATGCATCG 57.071 42.857 0.00 0.00 45.15 3.84
636 818 1.477553 AAAATGGCTCCATGCATCGT 58.522 45.000 0.00 0.00 45.15 3.73
637 819 1.027357 AAATGGCTCCATGCATCGTC 58.973 50.000 0.00 0.00 45.15 4.20
638 820 0.182061 AATGGCTCCATGCATCGTCT 59.818 50.000 0.00 0.00 45.15 4.18
639 821 1.051008 ATGGCTCCATGCATCGTCTA 58.949 50.000 0.00 0.00 45.15 2.59
640 822 0.390492 TGGCTCCATGCATCGTCTAG 59.610 55.000 0.00 0.00 45.15 2.43
641 823 0.676184 GGCTCCATGCATCGTCTAGA 59.324 55.000 0.00 0.00 45.15 2.43
642 824 1.274728 GGCTCCATGCATCGTCTAGAT 59.725 52.381 0.00 0.00 45.15 1.98
652 834 2.299993 TCGTCTAGATGCAAAGGCTG 57.700 50.000 7.11 0.00 41.91 4.85
653 835 1.134699 TCGTCTAGATGCAAAGGCTGG 60.135 52.381 7.11 0.00 41.91 4.85
654 836 1.673168 GTCTAGATGCAAAGGCTGGG 58.327 55.000 0.00 0.00 41.91 4.45
655 837 0.548031 TCTAGATGCAAAGGCTGGGG 59.452 55.000 0.00 0.00 41.91 4.96
656 838 0.257039 CTAGATGCAAAGGCTGGGGT 59.743 55.000 0.00 0.00 41.91 4.95
657 839 0.255890 TAGATGCAAAGGCTGGGGTC 59.744 55.000 0.00 0.00 41.91 4.46
658 840 1.304381 GATGCAAAGGCTGGGGTCA 60.304 57.895 0.00 0.00 41.91 4.02
659 841 0.685458 GATGCAAAGGCTGGGGTCAT 60.685 55.000 0.00 0.00 41.91 3.06
660 842 0.685458 ATGCAAAGGCTGGGGTCATC 60.685 55.000 0.00 0.00 41.91 2.92
661 843 2.054453 GCAAAGGCTGGGGTCATCC 61.054 63.158 0.00 0.00 36.96 3.51
662 844 1.693640 CAAAGGCTGGGGTCATCCT 59.306 57.895 0.00 0.00 40.92 3.24
663 845 4.276055 AAGGCTGGGGTCATCCTT 57.724 55.556 0.00 0.00 42.71 3.36
664 846 0.332972 AAAGGCTGGGGTCATCCTTC 59.667 55.000 2.55 0.00 45.64 3.46
665 847 0.551131 AAGGCTGGGGTCATCCTTCT 60.551 55.000 0.00 0.00 43.72 2.85
666 848 0.343372 AGGCTGGGGTCATCCTTCTA 59.657 55.000 0.00 0.00 36.17 2.10
667 849 1.061033 AGGCTGGGGTCATCCTTCTAT 60.061 52.381 0.00 0.00 36.17 1.98
668 850 1.777272 GGCTGGGGTCATCCTTCTATT 59.223 52.381 0.00 0.00 35.33 1.73
669 851 2.224646 GGCTGGGGTCATCCTTCTATTC 60.225 54.545 0.00 0.00 35.33 1.75
670 852 2.548920 GCTGGGGTCATCCTTCTATTCG 60.549 54.545 0.00 0.00 35.33 3.34
671 853 2.965831 CTGGGGTCATCCTTCTATTCGA 59.034 50.000 0.00 0.00 35.33 3.71
672 854 3.380393 TGGGGTCATCCTTCTATTCGAA 58.620 45.455 0.00 0.00 35.33 3.71
703 885 8.593492 AAAATCAGATTTTTCACTGGCTTTAC 57.407 30.769 14.43 0.00 39.28 2.01
704 886 5.356882 TCAGATTTTTCACTGGCTTTACG 57.643 39.130 0.00 0.00 35.20 3.18
709 891 2.380084 TTCACTGGCTTTACGGCTAG 57.620 50.000 0.00 0.00 44.58 3.42
721 903 1.519455 CGGCTAGCACTCCTTTCCG 60.519 63.158 18.24 3.31 33.22 4.30
747 929 0.180171 TTCCCACACCACACACTCTG 59.820 55.000 0.00 0.00 0.00 3.35
752 934 0.980754 ACACCACACACTCTGGACCA 60.981 55.000 0.00 0.00 32.55 4.02
754 936 0.180406 ACCACACACTCTGGACCAAC 59.820 55.000 0.00 0.00 32.55 3.77
755 937 0.469917 CCACACACTCTGGACCAACT 59.530 55.000 0.00 0.00 0.00 3.16
756 938 1.691976 CCACACACTCTGGACCAACTA 59.308 52.381 0.00 0.00 0.00 2.24
757 939 2.289072 CCACACACTCTGGACCAACTAG 60.289 54.545 0.00 0.00 0.00 2.57
758 940 2.365617 CACACACTCTGGACCAACTAGT 59.634 50.000 0.00 0.00 0.00 2.57
759 941 3.572682 CACACACTCTGGACCAACTAGTA 59.427 47.826 0.00 0.00 0.00 1.82
760 942 3.827302 ACACACTCTGGACCAACTAGTAG 59.173 47.826 0.00 0.00 0.00 2.57
812 1005 4.813697 GCTTCACTTCACTCTCTGTTTCTT 59.186 41.667 0.00 0.00 0.00 2.52
821 1014 5.242838 TCACTCTCTGTTTCTTTCTCTCTCC 59.757 44.000 0.00 0.00 0.00 3.71
847 1040 0.972883 ACAAGACAGAGAGGGCACTC 59.027 55.000 8.30 8.30 44.31 3.51
860 1053 1.517242 GGCACTCAAGACTGAACCAG 58.483 55.000 0.00 0.00 37.52 4.00
873 1066 2.874701 CTGAACCAGAAGTGTTGGACAG 59.125 50.000 0.00 4.11 39.08 3.51
901 1094 3.687212 CGTAGCTGAGTCTGAGAGAGAAA 59.313 47.826 0.00 0.00 30.26 2.52
902 1095 4.436852 CGTAGCTGAGTCTGAGAGAGAAAC 60.437 50.000 0.00 0.00 30.26 2.78
903 1096 2.825532 AGCTGAGTCTGAGAGAGAAACC 59.174 50.000 0.47 0.00 30.26 3.27
904 1097 2.094234 GCTGAGTCTGAGAGAGAAACCC 60.094 54.545 0.47 0.00 30.26 4.11
905 1098 3.161067 CTGAGTCTGAGAGAGAAACCCA 58.839 50.000 0.00 0.00 30.26 4.51
916 1109 7.671302 TGAGAGAGAAACCCAACATATATAGC 58.329 38.462 0.00 0.00 0.00 2.97
917 1110 7.290014 TGAGAGAGAAACCCAACATATATAGCA 59.710 37.037 0.00 0.00 0.00 3.49
918 1111 7.445945 AGAGAGAAACCCAACATATATAGCAC 58.554 38.462 0.00 0.00 0.00 4.40
919 1112 7.071196 AGAGAGAAACCCAACATATATAGCACA 59.929 37.037 0.00 0.00 0.00 4.57
920 1113 7.220030 AGAGAAACCCAACATATATAGCACAG 58.780 38.462 0.00 0.00 0.00 3.66
921 1114 5.765182 AGAAACCCAACATATATAGCACAGC 59.235 40.000 0.00 0.00 0.00 4.40
922 1115 4.705110 ACCCAACATATATAGCACAGCA 57.295 40.909 0.00 0.00 0.00 4.41
923 1116 4.389374 ACCCAACATATATAGCACAGCAC 58.611 43.478 0.00 0.00 0.00 4.40
924 1117 4.141505 ACCCAACATATATAGCACAGCACA 60.142 41.667 0.00 0.00 0.00 4.57
925 1118 5.005740 CCCAACATATATAGCACAGCACAT 58.994 41.667 0.00 0.00 0.00 3.21
926 1119 5.122869 CCCAACATATATAGCACAGCACATC 59.877 44.000 0.00 0.00 0.00 3.06
927 1120 5.122869 CCAACATATATAGCACAGCACATCC 59.877 44.000 0.00 0.00 0.00 3.51
957 1150 0.465287 CCTTGGCTGGTTGCTTGTTT 59.535 50.000 0.00 0.00 42.39 2.83
987 1180 2.368105 GCGTGTGTGCGTGAGAGAG 61.368 63.158 0.00 0.00 0.00 3.20
989 1182 0.727457 CGTGTGTGCGTGAGAGAGAG 60.727 60.000 0.00 0.00 0.00 3.20
990 1183 0.593618 GTGTGTGCGTGAGAGAGAGA 59.406 55.000 0.00 0.00 0.00 3.10
991 1184 0.593618 TGTGTGCGTGAGAGAGAGAC 59.406 55.000 0.00 0.00 0.00 3.36
992 1185 0.593618 GTGTGCGTGAGAGAGAGACA 59.406 55.000 0.00 0.00 0.00 3.41
1066 1259 0.462047 CGGGAAGAAGATGTTCCGGG 60.462 60.000 0.00 0.00 44.01 5.73
1111 1304 6.467723 CCAATGAATGGTACGCTAGTAATC 57.532 41.667 0.00 0.00 44.85 1.75
1112 1305 5.118664 CCAATGAATGGTACGCTAGTAATCG 59.881 44.000 0.00 0.00 44.85 3.34
1113 1306 4.906065 TGAATGGTACGCTAGTAATCGT 57.094 40.909 0.00 0.00 42.09 3.73
1114 1307 4.852138 TGAATGGTACGCTAGTAATCGTC 58.148 43.478 0.00 0.00 39.79 4.20
1116 1309 4.745837 ATGGTACGCTAGTAATCGTCTC 57.254 45.455 0.00 0.00 39.79 3.36
1117 1310 3.801698 TGGTACGCTAGTAATCGTCTCT 58.198 45.455 0.00 0.00 39.79 3.10
1118 1311 3.558829 TGGTACGCTAGTAATCGTCTCTG 59.441 47.826 0.00 0.00 39.79 3.35
1119 1312 3.059051 GGTACGCTAGTAATCGTCTCTGG 60.059 52.174 0.00 0.00 39.79 3.86
1175 1402 2.031919 TCCAATTCACACGCCGCT 59.968 55.556 0.00 0.00 0.00 5.52
1224 1452 3.384014 GACGTCTCCAGCGACCTCG 62.384 68.421 8.70 0.00 43.27 4.63
1275 1503 1.070134 TCCACAAGGTGAGAGAAACCG 59.930 52.381 0.00 0.00 42.89 4.44
1290 1518 2.903855 CCGCCATGTCCATCAGCC 60.904 66.667 0.00 0.00 0.00 4.85
1323 1552 0.394352 AAATGACGTCCTGATGCCCC 60.394 55.000 14.12 0.00 0.00 5.80
1863 2101 3.462678 GGCCTCGGACTGGACCTC 61.463 72.222 0.00 0.00 0.00 3.85
1917 2155 3.382111 CTCAGGCAGGAGACGGTT 58.618 61.111 0.34 0.00 37.05 4.44
1938 2176 2.040178 ACCCGGATCCTCATCAACTAC 58.960 52.381 10.75 0.00 0.00 2.73
1944 2182 0.824109 TCCTCATCAACTACGCCCAG 59.176 55.000 0.00 0.00 0.00 4.45
1953 2191 1.226717 CTACGCCCAGAACTCGCTC 60.227 63.158 0.00 0.00 0.00 5.03
1977 2215 2.124403 CTCATGGCCTGCAGGGAC 60.124 66.667 33.46 17.96 45.52 4.46
2067 2317 2.360350 ACCATCGTGGGCTTGCTG 60.360 61.111 8.57 0.00 43.37 4.41
2123 2373 2.364317 CCTCTCGGGGCTCCTCAA 60.364 66.667 0.00 0.00 0.00 3.02
2161 2411 1.302366 CGCTTCCAGCATATGCAAGA 58.698 50.000 28.62 20.74 42.58 3.02
2193 2443 3.344215 CGGATCGGCATGCAGCTC 61.344 66.667 21.36 16.47 44.79 4.09
2196 2446 2.587194 ATCGGCATGCAGCTCGAC 60.587 61.111 21.36 0.00 44.52 4.20
2328 2578 1.697432 TCGGTGTTCCTCAACCTTGAT 59.303 47.619 0.00 0.00 36.46 2.57
2402 2652 2.185608 GTCCCCGAAGCAGAGCTC 59.814 66.667 5.27 5.27 38.25 4.09
2418 2668 3.568007 AGAGCTCTATAGTCAAGGCTTCG 59.432 47.826 16.50 0.00 0.00 3.79
2594 2846 7.200455 CGCCCTTTTCTTTTTCTCTCTTTTAA 58.800 34.615 0.00 0.00 0.00 1.52
2614 2902 6.542574 TTAATGTTACCACGAACGTTCATT 57.457 33.333 26.71 17.92 38.95 2.57
2615 2903 7.649370 TTAATGTTACCACGAACGTTCATTA 57.351 32.000 26.71 17.01 38.95 1.90
2617 2905 6.730960 ATGTTACCACGAACGTTCATTAAT 57.269 33.333 26.71 10.96 31.59 1.40
2618 2906 6.542574 TGTTACCACGAACGTTCATTAATT 57.457 33.333 26.71 8.86 31.59 1.40
2619 2907 6.364261 TGTTACCACGAACGTTCATTAATTG 58.636 36.000 26.71 11.70 31.59 2.32
2620 2908 4.413495 ACCACGAACGTTCATTAATTGG 57.587 40.909 26.71 21.29 0.00 3.16
2622 2910 3.426963 CCACGAACGTTCATTAATTGGGG 60.427 47.826 26.71 15.34 0.00 4.96
2623 2911 3.189702 CACGAACGTTCATTAATTGGGGT 59.810 43.478 26.71 10.24 0.00 4.95
2624 2912 3.189702 ACGAACGTTCATTAATTGGGGTG 59.810 43.478 26.71 8.95 0.00 4.61
2625 2913 3.426963 CGAACGTTCATTAATTGGGGTGG 60.427 47.826 26.71 2.64 0.00 4.61
2626 2914 1.822371 ACGTTCATTAATTGGGGTGGC 59.178 47.619 0.00 0.00 0.00 5.01
2627 2915 1.136110 CGTTCATTAATTGGGGTGGCC 59.864 52.381 0.00 0.00 0.00 5.36
2628 2916 2.183679 GTTCATTAATTGGGGTGGCCA 58.816 47.619 0.00 0.00 0.00 5.36
2629 2917 2.771372 GTTCATTAATTGGGGTGGCCAT 59.229 45.455 9.72 0.00 0.00 4.40
2630 2918 2.396608 TCATTAATTGGGGTGGCCATG 58.603 47.619 9.72 0.00 0.00 3.66
2631 2919 1.417145 CATTAATTGGGGTGGCCATGG 59.583 52.381 9.72 7.63 0.00 3.66
2632 2920 0.712979 TTAATTGGGGTGGCCATGGA 59.287 50.000 18.40 0.00 0.00 3.41
2633 2921 0.712979 TAATTGGGGTGGCCATGGAA 59.287 50.000 18.40 0.00 0.00 3.53
2667 2955 0.807667 CGAACATCAAGGAGGCGGAG 60.808 60.000 0.00 0.00 0.00 4.63
2823 3111 4.458829 ATCCAGTCCGGCGGAGGA 62.459 66.667 31.46 31.46 38.11 3.71
2879 3167 4.796231 TCTCTTCTTCGGCGGCGC 62.796 66.667 28.25 26.17 0.00 6.53
3256 3556 3.679980 CCGCCATTCCATCTCGTAAATAG 59.320 47.826 0.00 0.00 0.00 1.73
3265 3569 1.064505 TCTCGTAAATAGACCACCGCG 59.935 52.381 0.00 0.00 0.00 6.46
3266 3570 0.526096 TCGTAAATAGACCACCGCGC 60.526 55.000 0.00 0.00 0.00 6.86
3268 3572 1.879430 TAAATAGACCACCGCGCGC 60.879 57.895 27.36 23.91 0.00 6.86
3331 3643 2.159572 GCAAGTGATAAAACGCCGTGAT 60.160 45.455 0.00 0.00 0.00 3.06
3332 3644 3.669557 GCAAGTGATAAAACGCCGTGATT 60.670 43.478 0.00 0.00 0.00 2.57
3334 3646 3.331150 AGTGATAAAACGCCGTGATTGA 58.669 40.909 0.00 0.00 0.00 2.57
3335 3647 3.938963 AGTGATAAAACGCCGTGATTGAT 59.061 39.130 0.00 0.00 0.00 2.57
3336 3648 4.034048 AGTGATAAAACGCCGTGATTGATC 59.966 41.667 0.00 0.00 0.00 2.92
3338 3650 5.233476 GTGATAAAACGCCGTGATTGATCTA 59.767 40.000 0.00 0.00 0.00 1.98
3344 3666 3.370978 ACGCCGTGATTGATCTACTTTTG 59.629 43.478 0.00 0.00 0.00 2.44
3427 3749 3.189910 CGTGGGGATTGCATGATATTCTG 59.810 47.826 0.00 0.00 0.00 3.02
3432 3754 5.479375 GGGGATTGCATGATATTCTGTTGAT 59.521 40.000 0.00 0.00 0.00 2.57
3433 3755 6.660521 GGGGATTGCATGATATTCTGTTGATA 59.339 38.462 0.00 0.00 0.00 2.15
3434 3756 7.148120 GGGGATTGCATGATATTCTGTTGATAG 60.148 40.741 0.00 0.00 0.00 2.08
3435 3757 7.392673 GGGATTGCATGATATTCTGTTGATAGT 59.607 37.037 0.00 0.00 0.00 2.12
3436 3758 9.440773 GGATTGCATGATATTCTGTTGATAGTA 57.559 33.333 0.00 0.00 0.00 1.82
3445 3767 9.332301 GATATTCTGTTGATAGTAGTAGAACGC 57.668 37.037 0.00 0.00 0.00 4.84
3446 3768 6.754702 TTCTGTTGATAGTAGTAGAACGCT 57.245 37.500 0.00 0.00 0.00 5.07
3447 3769 6.360844 TCTGTTGATAGTAGTAGAACGCTC 57.639 41.667 0.00 0.00 0.00 5.03
3448 3770 6.114089 TCTGTTGATAGTAGTAGAACGCTCT 58.886 40.000 0.00 0.00 35.52 4.09
3449 3771 6.598457 TCTGTTGATAGTAGTAGAACGCTCTT 59.402 38.462 0.00 0.00 32.70 2.85
3450 3772 7.120873 TCTGTTGATAGTAGTAGAACGCTCTTT 59.879 37.037 0.00 0.00 32.70 2.52
3451 3773 7.027760 TGTTGATAGTAGTAGAACGCTCTTTG 58.972 38.462 0.00 0.00 32.70 2.77
3452 3774 5.579718 TGATAGTAGTAGAACGCTCTTTGC 58.420 41.667 0.00 0.00 38.57 3.68
3453 3775 5.357314 TGATAGTAGTAGAACGCTCTTTGCT 59.643 40.000 0.00 0.00 40.11 3.91
3454 3776 6.541278 TGATAGTAGTAGAACGCTCTTTGCTA 59.459 38.462 0.00 0.00 40.11 3.49
3455 3777 5.838531 AGTAGTAGAACGCTCTTTGCTAT 57.161 39.130 0.00 0.00 40.11 2.97
3456 3778 5.583495 AGTAGTAGAACGCTCTTTGCTATG 58.417 41.667 0.00 0.00 40.11 2.23
3457 3779 3.786635 AGTAGAACGCTCTTTGCTATGG 58.213 45.455 0.00 0.00 40.11 2.74
3458 3780 2.029838 AGAACGCTCTTTGCTATGGG 57.970 50.000 0.00 0.00 40.11 4.00
3459 3781 0.378610 GAACGCTCTTTGCTATGGGC 59.621 55.000 0.00 0.00 40.11 5.36
3460 3782 0.035056 AACGCTCTTTGCTATGGGCT 60.035 50.000 4.53 0.00 42.39 5.19
3461 3783 0.830648 ACGCTCTTTGCTATGGGCTA 59.169 50.000 4.53 0.00 42.39 3.93
3462 3784 1.221414 CGCTCTTTGCTATGGGCTAC 58.779 55.000 4.53 0.00 42.39 3.58
3463 3785 1.473257 CGCTCTTTGCTATGGGCTACA 60.473 52.381 4.53 0.00 42.39 2.74
3464 3786 2.643551 GCTCTTTGCTATGGGCTACAA 58.356 47.619 0.00 0.00 42.39 2.41
3465 3787 3.217626 GCTCTTTGCTATGGGCTACAAT 58.782 45.455 0.00 0.00 42.39 2.71
3466 3788 3.004106 GCTCTTTGCTATGGGCTACAATG 59.996 47.826 0.00 0.00 42.39 2.82
3467 3789 2.951642 TCTTTGCTATGGGCTACAATGC 59.048 45.455 0.00 0.00 42.39 3.56
3468 3790 2.433662 TTGCTATGGGCTACAATGCA 57.566 45.000 0.00 0.00 42.39 3.96
3469 3791 2.662535 TGCTATGGGCTACAATGCAT 57.337 45.000 0.00 0.00 42.39 3.96
3470 3792 3.786368 TGCTATGGGCTACAATGCATA 57.214 42.857 0.00 0.00 42.39 3.14
3471 3793 3.411446 TGCTATGGGCTACAATGCATAC 58.589 45.455 0.00 0.00 42.39 2.39
3472 3794 2.416547 GCTATGGGCTACAATGCATACG 59.583 50.000 0.00 0.00 38.06 3.06
3473 3795 2.928801 ATGGGCTACAATGCATACGA 57.071 45.000 0.00 0.00 34.04 3.43
3474 3796 2.700722 TGGGCTACAATGCATACGAA 57.299 45.000 0.00 0.00 34.04 3.85
3475 3797 3.207265 TGGGCTACAATGCATACGAAT 57.793 42.857 0.00 0.00 34.04 3.34
3476 3798 3.138304 TGGGCTACAATGCATACGAATC 58.862 45.455 0.00 0.00 34.04 2.52
3477 3799 2.157668 GGGCTACAATGCATACGAATCG 59.842 50.000 0.00 0.00 34.04 3.34
3478 3800 2.411547 GGCTACAATGCATACGAATCGC 60.412 50.000 1.15 0.00 34.04 4.58
3479 3801 5.752080 GGCTACAATGCATACGAATCGCG 62.752 52.174 1.15 0.00 39.44 5.87
3480 3802 0.042188 ACAATGCATACGAATCGCGC 60.042 50.000 0.00 0.00 46.04 6.86
3481 3803 0.722469 CAATGCATACGAATCGCGCC 60.722 55.000 0.00 0.00 46.04 6.53
3482 3804 1.157257 AATGCATACGAATCGCGCCA 61.157 50.000 0.00 0.00 46.04 5.69
3483 3805 1.157257 ATGCATACGAATCGCGCCAA 61.157 50.000 0.00 0.00 46.04 4.52
3484 3806 1.083401 GCATACGAATCGCGCCAAG 60.083 57.895 0.00 0.00 46.04 3.61
3485 3807 1.564622 CATACGAATCGCGCCAAGG 59.435 57.895 0.00 0.00 46.04 3.61
3486 3808 2.244651 ATACGAATCGCGCCAAGGC 61.245 57.895 0.00 0.00 46.04 4.35
3503 3825 4.899239 CGCGAGGATGCCAGTCCC 62.899 72.222 0.00 0.00 39.17 4.46
3504 3826 3.785859 GCGAGGATGCCAGTCCCA 61.786 66.667 0.00 0.00 39.17 4.37
3505 3827 2.989639 CGAGGATGCCAGTCCCAA 59.010 61.111 0.00 0.00 39.17 4.12
3506 3828 1.450312 CGAGGATGCCAGTCCCAAC 60.450 63.158 0.00 0.00 39.17 3.77
3507 3829 1.450312 GAGGATGCCAGTCCCAACG 60.450 63.158 0.00 0.00 39.17 4.10
3508 3830 2.185310 GAGGATGCCAGTCCCAACGT 62.185 60.000 0.00 0.00 39.17 3.99
3509 3831 1.303317 GGATGCCAGTCCCAACGTT 60.303 57.895 0.00 0.00 31.82 3.99
3510 3832 0.893727 GGATGCCAGTCCCAACGTTT 60.894 55.000 0.00 0.00 31.82 3.60
3511 3833 0.958822 GATGCCAGTCCCAACGTTTT 59.041 50.000 0.00 0.00 0.00 2.43
3512 3834 0.673437 ATGCCAGTCCCAACGTTTTG 59.327 50.000 0.00 0.00 0.00 2.44
3521 3843 1.838913 CCAACGTTTTGGTCAAGCAG 58.161 50.000 0.00 0.00 46.63 4.24
3522 3844 1.134175 CCAACGTTTTGGTCAAGCAGT 59.866 47.619 0.00 0.00 46.63 4.40
3523 3845 2.416701 CCAACGTTTTGGTCAAGCAGTT 60.417 45.455 0.00 0.00 46.63 3.16
3524 3846 3.181495 CCAACGTTTTGGTCAAGCAGTTA 60.181 43.478 0.00 0.00 46.63 2.24
3525 3847 4.416620 CAACGTTTTGGTCAAGCAGTTAA 58.583 39.130 0.00 0.00 0.00 2.01
3526 3848 4.911514 ACGTTTTGGTCAAGCAGTTAAT 57.088 36.364 0.00 0.00 0.00 1.40
3527 3849 4.606961 ACGTTTTGGTCAAGCAGTTAATG 58.393 39.130 0.00 0.00 0.00 1.90
3544 3866 8.283340 CAGTTAATGCTAAGTCGGTAGTAATC 57.717 38.462 0.00 0.00 0.00 1.75
3545 3867 8.136165 CAGTTAATGCTAAGTCGGTAGTAATCT 58.864 37.037 0.00 0.00 0.00 2.40
3546 3868 9.347240 AGTTAATGCTAAGTCGGTAGTAATCTA 57.653 33.333 0.00 0.00 0.00 1.98
3547 3869 9.609950 GTTAATGCTAAGTCGGTAGTAATCTAG 57.390 37.037 0.00 0.00 0.00 2.43
3548 3870 6.821031 ATGCTAAGTCGGTAGTAATCTAGG 57.179 41.667 0.00 0.00 0.00 3.02
3549 3871 5.688807 TGCTAAGTCGGTAGTAATCTAGGT 58.311 41.667 0.00 0.00 0.00 3.08
3550 3872 6.125029 TGCTAAGTCGGTAGTAATCTAGGTT 58.875 40.000 0.00 0.00 0.00 3.50
3551 3873 6.604795 TGCTAAGTCGGTAGTAATCTAGGTTT 59.395 38.462 0.00 0.00 0.00 3.27
3552 3874 7.775093 TGCTAAGTCGGTAGTAATCTAGGTTTA 59.225 37.037 0.00 0.00 0.00 2.01
3553 3875 8.288913 GCTAAGTCGGTAGTAATCTAGGTTTAG 58.711 40.741 0.00 0.00 0.00 1.85
3554 3876 6.631971 AGTCGGTAGTAATCTAGGTTTAGC 57.368 41.667 0.00 0.00 0.00 3.09
3555 3877 6.125029 AGTCGGTAGTAATCTAGGTTTAGCA 58.875 40.000 0.00 0.00 0.00 3.49
3556 3878 6.776603 AGTCGGTAGTAATCTAGGTTTAGCAT 59.223 38.462 0.00 0.00 0.00 3.79
3557 3879 7.941238 AGTCGGTAGTAATCTAGGTTTAGCATA 59.059 37.037 0.00 0.00 0.00 3.14
3558 3880 8.738106 GTCGGTAGTAATCTAGGTTTAGCATAT 58.262 37.037 0.00 0.00 0.00 1.78
3559 3881 8.737175 TCGGTAGTAATCTAGGTTTAGCATATG 58.263 37.037 0.00 0.00 0.00 1.78
3560 3882 7.488471 CGGTAGTAATCTAGGTTTAGCATATGC 59.512 40.741 20.36 20.36 42.49 3.14
3561 3883 8.311836 GGTAGTAATCTAGGTTTAGCATATGCA 58.688 37.037 28.62 12.53 45.16 3.96
3562 3884 9.877178 GTAGTAATCTAGGTTTAGCATATGCAT 57.123 33.333 28.62 16.04 45.16 3.96
3564 3886 9.442047 AGTAATCTAGGTTTAGCATATGCATTC 57.558 33.333 28.62 15.15 45.16 2.67
3565 3887 9.219603 GTAATCTAGGTTTAGCATATGCATTCA 57.780 33.333 28.62 8.67 45.16 2.57
3566 3888 8.696043 AATCTAGGTTTAGCATATGCATTCAA 57.304 30.769 28.62 13.90 45.16 2.69
3567 3889 8.696043 ATCTAGGTTTAGCATATGCATTCAAA 57.304 30.769 28.62 18.34 45.16 2.69
3568 3890 8.696043 TCTAGGTTTAGCATATGCATTCAAAT 57.304 30.769 28.62 9.39 45.16 2.32
3569 3891 9.791801 TCTAGGTTTAGCATATGCATTCAAATA 57.208 29.630 28.62 8.37 45.16 1.40
3571 3893 8.469309 AGGTTTAGCATATGCATTCAAATAGT 57.531 30.769 28.62 7.20 45.16 2.12
3572 3894 8.917088 AGGTTTAGCATATGCATTCAAATAGTT 58.083 29.630 28.62 6.68 45.16 2.24
3625 3947 9.747293 AGTGAGATATAATGATGCTCAATATCG 57.253 33.333 0.00 0.00 37.35 2.92
3626 3948 9.526713 GTGAGATATAATGATGCTCAATATCGT 57.473 33.333 0.00 0.00 37.35 3.73
3627 3949 9.741647 TGAGATATAATGATGCTCAATATCGTC 57.258 33.333 0.00 8.88 34.31 4.20
3628 3950 9.741647 GAGATATAATGATGCTCAATATCGTCA 57.258 33.333 0.00 0.00 34.31 4.35
3632 3954 6.723131 AATGATGCTCAATATCGTCATGAG 57.277 37.500 0.00 0.00 42.70 2.90
3633 3955 5.458041 TGATGCTCAATATCGTCATGAGA 57.542 39.130 0.00 0.00 42.48 3.27
3634 3956 5.225642 TGATGCTCAATATCGTCATGAGAC 58.774 41.667 0.00 0.00 42.48 3.36
3635 3957 4.926140 TGCTCAATATCGTCATGAGACT 57.074 40.909 0.00 0.00 42.48 3.24
3636 3958 6.207417 TGATGCTCAATATCGTCATGAGACTA 59.793 38.462 0.00 0.00 42.48 2.59
3637 3959 6.581171 TGCTCAATATCGTCATGAGACTAT 57.419 37.500 0.00 0.00 42.48 2.12
3638 3960 7.687941 TGCTCAATATCGTCATGAGACTATA 57.312 36.000 0.00 0.00 42.48 1.31
3639 3961 8.110860 TGCTCAATATCGTCATGAGACTATAA 57.889 34.615 0.00 0.00 42.48 0.98
3640 3962 8.239998 TGCTCAATATCGTCATGAGACTATAAG 58.760 37.037 0.00 0.00 42.48 1.73
3641 3963 7.700234 GCTCAATATCGTCATGAGACTATAAGG 59.300 40.741 0.00 0.00 42.48 2.69
3642 3964 7.539436 TCAATATCGTCATGAGACTATAAGGC 58.461 38.462 0.00 0.00 42.73 4.35
3643 3965 7.176690 TCAATATCGTCATGAGACTATAAGGCA 59.823 37.037 0.00 0.00 42.73 4.75
3644 3966 4.837896 TCGTCATGAGACTATAAGGCAG 57.162 45.455 0.00 0.00 42.73 4.85
3645 3967 4.461198 TCGTCATGAGACTATAAGGCAGA 58.539 43.478 0.00 0.00 42.73 4.26
3646 3968 4.887655 TCGTCATGAGACTATAAGGCAGAA 59.112 41.667 0.00 0.00 42.73 3.02
3647 3969 5.536538 TCGTCATGAGACTATAAGGCAGAAT 59.463 40.000 0.00 0.00 42.73 2.40
3648 3970 6.715264 TCGTCATGAGACTATAAGGCAGAATA 59.285 38.462 0.00 0.00 42.73 1.75
3649 3971 7.230712 TCGTCATGAGACTATAAGGCAGAATAA 59.769 37.037 0.00 0.00 42.73 1.40
3650 3972 8.031864 CGTCATGAGACTATAAGGCAGAATAAT 58.968 37.037 0.00 0.00 42.73 1.28
3651 3973 9.717942 GTCATGAGACTATAAGGCAGAATAATT 57.282 33.333 0.00 0.00 41.64 1.40
3659 3981 8.774586 ACTATAAGGCAGAATAATTTTAGTGCG 58.225 33.333 0.00 0.00 0.00 5.34
3660 3982 5.897377 AAGGCAGAATAATTTTAGTGCGT 57.103 34.783 0.00 0.00 0.00 5.24
3661 3983 5.897377 AGGCAGAATAATTTTAGTGCGTT 57.103 34.783 0.00 0.00 0.00 4.84
3662 3984 5.880341 AGGCAGAATAATTTTAGTGCGTTC 58.120 37.500 0.00 0.00 0.00 3.95
3663 3985 5.414454 AGGCAGAATAATTTTAGTGCGTTCA 59.586 36.000 0.00 0.00 0.00 3.18
3664 3986 6.095440 AGGCAGAATAATTTTAGTGCGTTCAT 59.905 34.615 0.00 0.00 0.00 2.57
3665 3987 7.282224 AGGCAGAATAATTTTAGTGCGTTCATA 59.718 33.333 0.00 0.00 0.00 2.15
3666 3988 7.913297 GGCAGAATAATTTTAGTGCGTTCATAA 59.087 33.333 0.00 0.00 0.00 1.90
3667 3989 8.947940 GCAGAATAATTTTAGTGCGTTCATAAG 58.052 33.333 0.00 0.00 0.00 1.73
3670 3992 9.434559 GAATAATTTTAGTGCGTTCATAAGACC 57.565 33.333 0.00 0.00 0.00 3.85
3671 3993 6.811253 AATTTTAGTGCGTTCATAAGACCA 57.189 33.333 0.00 0.00 0.00 4.02
3672 3994 5.600908 TTTTAGTGCGTTCATAAGACCAC 57.399 39.130 0.00 0.00 0.00 4.16
3673 3995 2.831685 AGTGCGTTCATAAGACCACA 57.168 45.000 0.00 0.00 0.00 4.17
3674 3996 3.120321 AGTGCGTTCATAAGACCACAA 57.880 42.857 0.00 0.00 0.00 3.33
3675 3997 3.472652 AGTGCGTTCATAAGACCACAAA 58.527 40.909 0.00 0.00 0.00 2.83
3676 3998 3.880490 AGTGCGTTCATAAGACCACAAAA 59.120 39.130 0.00 0.00 0.00 2.44
3677 3999 4.336993 AGTGCGTTCATAAGACCACAAAAA 59.663 37.500 0.00 0.00 0.00 1.94
3699 4021 8.631480 AAAAATAACCACTCGATAGGAAGTTT 57.369 30.769 9.98 6.63 0.00 2.66
3700 4022 7.611213 AAATAACCACTCGATAGGAAGTTTG 57.389 36.000 9.98 0.00 0.00 2.93
3701 4023 4.884668 AACCACTCGATAGGAAGTTTGA 57.115 40.909 9.98 0.00 0.00 2.69
3702 4024 4.884668 ACCACTCGATAGGAAGTTTGAA 57.115 40.909 9.98 0.00 0.00 2.69
3703 4025 5.223449 ACCACTCGATAGGAAGTTTGAAA 57.777 39.130 9.98 0.00 0.00 2.69
3704 4026 4.995487 ACCACTCGATAGGAAGTTTGAAAC 59.005 41.667 9.98 0.00 0.00 2.78
3705 4027 4.392138 CCACTCGATAGGAAGTTTGAAACC 59.608 45.833 4.14 0.00 0.00 3.27
3706 4028 4.994852 CACTCGATAGGAAGTTTGAAACCA 59.005 41.667 4.14 0.00 0.00 3.67
3707 4029 5.468746 CACTCGATAGGAAGTTTGAAACCAA 59.531 40.000 4.14 0.00 0.00 3.67
3708 4030 6.017440 CACTCGATAGGAAGTTTGAAACCAAA 60.017 38.462 4.14 0.00 0.00 3.28
3709 4031 6.544564 ACTCGATAGGAAGTTTGAAACCAAAA 59.455 34.615 4.14 0.00 35.54 2.44
3710 4032 6.966021 TCGATAGGAAGTTTGAAACCAAAAG 58.034 36.000 4.14 0.00 35.54 2.27
3711 4033 5.629435 CGATAGGAAGTTTGAAACCAAAAGC 59.371 40.000 4.14 0.00 35.54 3.51
3712 4034 3.780902 AGGAAGTTTGAAACCAAAAGCG 58.219 40.909 4.14 0.00 35.54 4.68
3713 4035 2.284150 GGAAGTTTGAAACCAAAAGCGC 59.716 45.455 0.00 0.00 35.54 5.92
3714 4036 2.663826 AGTTTGAAACCAAAAGCGCA 57.336 40.000 11.47 0.00 35.54 6.09
3734 4056 2.300967 CCTTGGAGCAGGGTGCCTA 61.301 63.158 0.00 0.00 46.52 3.93
3736 4058 0.257039 CTTGGAGCAGGGTGCCTATT 59.743 55.000 0.00 0.00 46.52 1.73
3754 4076 6.127479 TGCCTATTCCATCAATGTGGTAAAAC 60.127 38.462 2.70 0.00 40.27 2.43
3783 4105 6.552445 ATGATGAAGTTAGTAGGAAGCACT 57.448 37.500 0.00 0.00 0.00 4.40
3788 4110 7.958053 TGAAGTTAGTAGGAAGCACTTTTAC 57.042 36.000 0.00 0.00 0.00 2.01
3794 4116 9.447040 GTTAGTAGGAAGCACTTTTACAAAAAG 57.553 33.333 9.92 9.92 0.00 2.27
3798 4120 9.791820 GTAGGAAGCACTTTTACAAAAAGTTAA 57.208 29.630 13.60 0.00 38.32 2.01
3839 4161 6.348498 TCACATGTATTCAATAGGACAGTGG 58.652 40.000 0.00 0.00 0.00 4.00
3849 4171 2.206576 AGGACAGTGGATTTTCTGGC 57.793 50.000 0.00 0.00 38.82 4.85
3873 4198 6.855403 GCTCAAGAGAAAGAAACATTCACTTC 59.145 38.462 0.32 0.00 36.15 3.01
3881 4207 9.075678 AGAAAGAAACATTCACTTCATGAGAAT 57.924 29.630 0.00 0.00 38.99 2.40
3901 4227 7.333672 TGAGAATCAAGACATCATCAAGTTCAG 59.666 37.037 0.00 0.00 45.97 3.02
3912 4238 3.421919 TCAAGTTCAGCATGGTCATGA 57.578 42.857 14.43 0.00 41.20 3.07
3913 4239 3.753815 TCAAGTTCAGCATGGTCATGAA 58.246 40.909 14.43 0.00 41.20 2.57
3917 4243 5.320549 AGTTCAGCATGGTCATGAAATTC 57.679 39.130 14.43 0.00 41.20 2.17
3930 4256 3.281727 TGAAATTCTAAGGCCGCATCT 57.718 42.857 0.00 0.00 0.00 2.90
3939 4265 0.905357 AGGCCGCATCTAGTTCAGTT 59.095 50.000 0.00 0.00 0.00 3.16
3947 4273 5.580691 CCGCATCTAGTTCAGTTTGTTCATA 59.419 40.000 0.00 0.00 0.00 2.15
3983 4309 8.621532 AGCTAATCACTTGACACTAAATTCAA 57.378 30.769 0.00 0.00 0.00 2.69
4107 4435 8.617809 GTGTCTTTTCTTTTCATAGGTACACAA 58.382 33.333 0.00 0.00 34.12 3.33
4188 4516 7.120923 TGACAGAATGGGTATAGTAAAGTCC 57.879 40.000 0.00 0.00 43.62 3.85
4195 4523 4.713321 TGGGTATAGTAAAGTCCCACTGTC 59.287 45.833 0.00 0.00 42.52 3.51
4205 4533 4.478206 AGTCCCACTGTCACATTGATAG 57.522 45.455 0.00 0.00 40.81 2.08
4229 4558 7.911651 AGAGAATCATCTTGTTACAAGAGGAA 58.088 34.615 34.91 22.93 39.96 3.36
4231 4560 8.329203 AGAATCATCTTGTTACAAGAGGAAAC 57.671 34.615 34.91 29.60 39.96 2.78
4233 4562 4.451096 TCATCTTGTTACAAGAGGAAACGC 59.549 41.667 31.40 0.00 34.62 4.84
4239 4568 4.024387 TGTTACAAGAGGAAACGCACAATC 60.024 41.667 0.00 0.00 0.00 2.67
4241 4570 2.290641 ACAAGAGGAAACGCACAATCAC 59.709 45.455 0.00 0.00 0.00 3.06
4247 4576 2.147958 GAAACGCACAATCACCACCTA 58.852 47.619 0.00 0.00 0.00 3.08
4248 4577 1.519408 AACGCACAATCACCACCTAC 58.481 50.000 0.00 0.00 0.00 3.18
4250 4579 0.321210 CGCACAATCACCACCTACCA 60.321 55.000 0.00 0.00 0.00 3.25
4252 4581 2.446435 GCACAATCACCACCTACCAAT 58.554 47.619 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.949952 AGTTGGAAAGGTAAACTGTTGTCTT 59.050 36.000 0.00 0.00 33.01 3.01
135 136 1.644786 GCGGGTTGGATCAGTTTCCG 61.645 60.000 0.00 2.31 38.74 4.30
145 146 2.046700 GTTCGGATGCGGGTTGGA 60.047 61.111 6.82 0.00 0.00 3.53
224 225 6.595716 ACTCTCGGGTCTTAAGATCAATTTTG 59.404 38.462 17.41 5.44 0.00 2.44
270 271 5.604010 AGAAAGCGAGAAATCTGAAACTG 57.396 39.130 0.00 0.00 0.00 3.16
297 298 4.554292 CGATTCTCTTCGTGGATGATCAT 58.446 43.478 8.25 8.25 34.46 2.45
308 309 2.911723 GCCGATGATACGATTCTCTTCG 59.088 50.000 0.00 0.00 44.56 3.79
349 350 7.171678 GGTAGTAAATCATCTAGTTGATGGTGC 59.828 40.741 15.44 10.78 45.13 5.01
402 584 8.588472 TCTTCAACAGACTCATAGAATGAAAGA 58.412 33.333 0.00 0.00 39.11 2.52
413 595 3.823304 GGCCTTTTCTTCAACAGACTCAT 59.177 43.478 0.00 0.00 0.00 2.90
414 596 3.214328 GGCCTTTTCTTCAACAGACTCA 58.786 45.455 0.00 0.00 0.00 3.41
466 648 7.951245 AGTTAAATGGGGTGGTACTCAAAATAA 59.049 33.333 0.00 0.00 0.00 1.40
496 678 1.401552 CAGTGCATGAATTACACCGGG 59.598 52.381 6.32 0.00 34.83 5.73
512 694 7.206981 AGTTGTTATCCTTCATGAAACAGTG 57.793 36.000 9.88 0.00 32.18 3.66
537 719 4.342378 GCAAGGTAGACACATCCTAGATGA 59.658 45.833 11.40 0.00 0.00 2.92
554 736 4.357918 ACAGACAGTTTCTATGCAAGGT 57.642 40.909 0.00 0.00 31.12 3.50
564 746 2.762745 TCGGCCTTTACAGACAGTTTC 58.237 47.619 0.00 0.00 0.00 2.78
567 749 1.692519 AGTTCGGCCTTTACAGACAGT 59.307 47.619 0.00 0.00 0.00 3.55
587 769 6.926272 GGCTAAATTTGGTTGTTGAACATGTA 59.074 34.615 0.00 0.00 33.27 2.29
597 779 9.665719 CCATTTTATTAGGCTAAATTTGGTTGT 57.334 29.630 11.59 0.00 0.00 3.32
615 797 3.225104 ACGATGCATGGAGCCATTTTAT 58.775 40.909 16.26 0.00 44.83 1.40
618 800 1.027357 GACGATGCATGGAGCCATTT 58.973 50.000 16.26 0.00 44.83 2.32
619 801 0.182061 AGACGATGCATGGAGCCATT 59.818 50.000 16.26 0.00 44.83 3.16
620 802 1.001746 CTAGACGATGCATGGAGCCAT 59.998 52.381 16.26 0.00 44.83 4.40
621 803 0.390492 CTAGACGATGCATGGAGCCA 59.610 55.000 16.26 0.00 44.83 4.75
622 804 0.676184 TCTAGACGATGCATGGAGCC 59.324 55.000 16.26 4.31 44.83 4.70
623 805 2.335752 CATCTAGACGATGCATGGAGC 58.664 52.381 16.26 6.94 42.75 4.70
632 814 2.484417 CCAGCCTTTGCATCTAGACGAT 60.484 50.000 0.00 0.00 41.13 3.73
633 815 1.134699 CCAGCCTTTGCATCTAGACGA 60.135 52.381 0.00 0.00 41.13 4.20
634 816 1.293924 CCAGCCTTTGCATCTAGACG 58.706 55.000 0.00 0.00 41.13 4.18
635 817 1.673168 CCCAGCCTTTGCATCTAGAC 58.327 55.000 0.00 0.00 41.13 2.59
636 818 0.548031 CCCCAGCCTTTGCATCTAGA 59.452 55.000 0.00 0.00 41.13 2.43
637 819 0.257039 ACCCCAGCCTTTGCATCTAG 59.743 55.000 0.00 0.00 41.13 2.43
638 820 0.255890 GACCCCAGCCTTTGCATCTA 59.744 55.000 0.00 0.00 41.13 1.98
639 821 1.000396 GACCCCAGCCTTTGCATCT 60.000 57.895 0.00 0.00 41.13 2.90
640 822 0.685458 ATGACCCCAGCCTTTGCATC 60.685 55.000 0.00 0.00 41.13 3.91
641 823 0.685458 GATGACCCCAGCCTTTGCAT 60.685 55.000 0.00 0.00 41.13 3.96
642 824 1.304381 GATGACCCCAGCCTTTGCA 60.304 57.895 0.00 0.00 41.13 4.08
643 825 2.054453 GGATGACCCCAGCCTTTGC 61.054 63.158 0.00 0.00 45.12 3.68
644 826 4.344237 GGATGACCCCAGCCTTTG 57.656 61.111 0.00 0.00 45.12 2.77
649 831 2.548920 CGAATAGAAGGATGACCCCAGC 60.549 54.545 0.00 0.00 36.73 4.85
650 832 2.965831 TCGAATAGAAGGATGACCCCAG 59.034 50.000 0.00 0.00 36.73 4.45
651 833 3.040655 TCGAATAGAAGGATGACCCCA 57.959 47.619 0.00 0.00 36.73 4.96
678 860 7.382218 CGTAAAGCCAGTGAAAAATCTGATTTT 59.618 33.333 19.79 19.79 43.83 1.82
679 861 6.863126 CGTAAAGCCAGTGAAAAATCTGATTT 59.137 34.615 9.76 9.76 34.02 2.17
680 862 6.381801 CGTAAAGCCAGTGAAAAATCTGATT 58.618 36.000 0.00 0.00 34.02 2.57
681 863 5.106157 CCGTAAAGCCAGTGAAAAATCTGAT 60.106 40.000 0.00 0.00 34.02 2.90
682 864 4.215399 CCGTAAAGCCAGTGAAAAATCTGA 59.785 41.667 0.00 0.00 34.02 3.27
683 865 4.475944 CCGTAAAGCCAGTGAAAAATCTG 58.524 43.478 0.00 0.00 0.00 2.90
684 866 3.057526 GCCGTAAAGCCAGTGAAAAATCT 60.058 43.478 0.00 0.00 0.00 2.40
685 867 3.057526 AGCCGTAAAGCCAGTGAAAAATC 60.058 43.478 0.00 0.00 0.00 2.17
686 868 2.890945 AGCCGTAAAGCCAGTGAAAAAT 59.109 40.909 0.00 0.00 0.00 1.82
687 869 2.303175 AGCCGTAAAGCCAGTGAAAAA 58.697 42.857 0.00 0.00 0.00 1.94
688 870 1.975660 AGCCGTAAAGCCAGTGAAAA 58.024 45.000 0.00 0.00 0.00 2.29
689 871 2.695359 CTAGCCGTAAAGCCAGTGAAA 58.305 47.619 0.00 0.00 0.00 2.69
690 872 1.674817 GCTAGCCGTAAAGCCAGTGAA 60.675 52.381 2.29 0.00 32.40 3.18
691 873 0.108329 GCTAGCCGTAAAGCCAGTGA 60.108 55.000 2.29 0.00 32.40 3.41
692 874 0.391130 TGCTAGCCGTAAAGCCAGTG 60.391 55.000 13.29 0.00 37.97 3.66
693 875 0.391263 GTGCTAGCCGTAAAGCCAGT 60.391 55.000 13.29 0.00 37.97 4.00
694 876 0.108138 AGTGCTAGCCGTAAAGCCAG 60.108 55.000 13.29 0.00 37.97 4.85
695 877 0.108329 GAGTGCTAGCCGTAAAGCCA 60.108 55.000 13.29 0.00 37.97 4.75
696 878 0.810426 GGAGTGCTAGCCGTAAAGCC 60.810 60.000 13.29 0.25 37.97 4.35
697 879 0.175989 AGGAGTGCTAGCCGTAAAGC 59.824 55.000 13.29 0.00 39.25 3.51
698 880 2.674796 AAGGAGTGCTAGCCGTAAAG 57.325 50.000 13.29 0.00 0.00 1.85
699 881 2.354403 GGAAAGGAGTGCTAGCCGTAAA 60.354 50.000 13.29 0.00 0.00 2.01
700 882 1.206371 GGAAAGGAGTGCTAGCCGTAA 59.794 52.381 13.29 0.00 0.00 3.18
701 883 0.822164 GGAAAGGAGTGCTAGCCGTA 59.178 55.000 13.29 0.00 0.00 4.02
702 884 1.597461 GGAAAGGAGTGCTAGCCGT 59.403 57.895 13.29 0.00 0.00 5.68
703 885 1.519455 CGGAAAGGAGTGCTAGCCG 60.519 63.158 13.29 9.99 0.00 5.52
704 886 1.815840 GCGGAAAGGAGTGCTAGCC 60.816 63.158 13.29 3.49 0.00 3.93
709 891 4.090057 GCGTGCGGAAAGGAGTGC 62.090 66.667 0.00 0.00 0.00 4.40
721 903 2.983030 TGGTGTGGGAATGCGTGC 60.983 61.111 0.00 0.00 0.00 5.34
774 956 2.089201 TGAAGCCGATGTCTTCTACGA 58.911 47.619 0.00 0.00 40.31 3.43
779 961 2.413453 GTGAAGTGAAGCCGATGTCTTC 59.587 50.000 0.00 0.00 40.13 2.87
847 1040 3.313526 CCAACACTTCTGGTTCAGTCTTG 59.686 47.826 0.00 0.00 32.61 3.02
873 1066 1.540267 TCAGACTCAGCTACGTGTTCC 59.460 52.381 0.00 0.00 0.00 3.62
901 1094 4.141505 TGTGCTGTGCTATATATGTTGGGT 60.142 41.667 0.00 0.00 0.00 4.51
902 1095 4.388485 TGTGCTGTGCTATATATGTTGGG 58.612 43.478 0.00 0.00 0.00 4.12
903 1096 5.122869 GGATGTGCTGTGCTATATATGTTGG 59.877 44.000 0.00 0.00 0.00 3.77
904 1097 5.702209 TGGATGTGCTGTGCTATATATGTTG 59.298 40.000 0.00 0.00 0.00 3.33
905 1098 5.868454 TGGATGTGCTGTGCTATATATGTT 58.132 37.500 0.00 0.00 0.00 2.71
920 1113 4.082192 CGCAGCAAATGGATGTGC 57.918 55.556 0.00 0.00 36.51 4.57
951 1144 1.120437 GCGCGGAACTCAAAAACAAG 58.880 50.000 8.83 0.00 0.00 3.16
957 1150 2.586635 ACACGCGCGGAACTCAAA 60.587 55.556 35.22 0.00 0.00 2.69
987 1180 3.126831 CACGCCCATCTTATTCTGTCTC 58.873 50.000 0.00 0.00 0.00 3.36
989 1182 2.213499 CCACGCCCATCTTATTCTGTC 58.787 52.381 0.00 0.00 0.00 3.51
990 1183 1.747206 GCCACGCCCATCTTATTCTGT 60.747 52.381 0.00 0.00 0.00 3.41
991 1184 0.947244 GCCACGCCCATCTTATTCTG 59.053 55.000 0.00 0.00 0.00 3.02
992 1185 0.532862 CGCCACGCCCATCTTATTCT 60.533 55.000 0.00 0.00 0.00 2.40
1066 1259 3.093278 CCGATTGTTGAGGCTCGC 58.907 61.111 10.42 5.99 0.00 5.03
1101 1294 4.023963 TGAATCCAGAGACGATTACTAGCG 60.024 45.833 0.00 0.00 39.51 4.26
1103 1296 6.616947 GGATGAATCCAGAGACGATTACTAG 58.383 44.000 4.38 0.00 46.38 2.57
1119 1312 4.664150 AGGAGAAGAACGAGGATGAATC 57.336 45.455 0.00 0.00 0.00 2.52
1155 1382 1.206578 CGGCGTGTGAATTGGACAC 59.793 57.895 0.00 7.11 40.34 3.67
1175 1402 2.828520 CCTAGAAGACAGACAGGAGCAA 59.171 50.000 0.00 0.00 0.00 3.91
1185 1412 0.827368 GTGGGAGGCCTAGAAGACAG 59.173 60.000 4.42 0.00 0.00 3.51
1275 1503 3.589881 GCGGCTGATGGACATGGC 61.590 66.667 0.00 0.00 0.00 4.40
1290 1518 3.155998 CGTCATTTTAAGCTCTGTTGCG 58.844 45.455 0.00 0.00 38.13 4.85
1795 2027 0.248702 GAGTCAAGCTCGACGATCCC 60.249 60.000 0.00 0.00 40.98 3.85
1796 2028 3.243855 GAGTCAAGCTCGACGATCC 57.756 57.895 0.00 0.00 40.98 3.36
1804 2036 4.821589 CCCCGGCGAGTCAAGCTC 62.822 72.222 9.30 0.00 40.77 4.09
1884 2122 1.002011 GAGGCCCTTGGACTTGACC 60.002 63.158 0.00 0.00 43.92 4.02
1917 2155 2.471815 AGTTGATGAGGATCCGGGTA 57.528 50.000 5.98 0.00 0.00 3.69
1938 2176 1.226717 GTAGAGCGAGTTCTGGGCG 60.227 63.158 0.00 0.00 0.00 6.13
1944 2182 1.064458 GAGCCCGTAGAGCGAGTTC 59.936 63.158 0.00 0.00 44.77 3.01
1980 2218 4.481112 CATTTGTCGGCGGCCTGC 62.481 66.667 18.34 9.98 45.38 4.85
1981 2219 4.481112 GCATTTGTCGGCGGCCTG 62.481 66.667 18.34 10.86 0.00 4.85
2123 2373 4.704833 ACAGCGCCATTGCCGTCT 62.705 61.111 2.29 0.00 34.65 4.18
2150 2400 1.221414 GAGGTCGGTCTTGCATATGC 58.779 55.000 21.09 21.09 42.50 3.14
2161 2411 3.441290 CCGCTTCTCGAGGTCGGT 61.441 66.667 23.31 0.00 41.67 4.69
2267 2517 1.299620 GTGTCGTACAGCGTGTGGT 60.300 57.895 0.00 0.00 42.13 4.16
2268 2518 1.299544 TGTGTCGTACAGCGTGTGG 60.300 57.895 0.00 0.00 42.13 4.17
2269 2519 4.312383 TGTGTCGTACAGCGTGTG 57.688 55.556 0.00 0.00 42.13 3.82
2286 2536 2.680352 ATCCTCGCCACCACGTCT 60.680 61.111 0.00 0.00 0.00 4.18
2328 2578 1.304217 GTCCTCCTCGGTGTCCTCA 60.304 63.158 0.00 0.00 0.00 3.86
2356 2606 4.789075 GTAGTCGAAGCCGCCGCA 62.789 66.667 0.00 0.00 37.52 5.69
2358 2608 4.170062 TCGTAGTCGAAGCCGCCG 62.170 66.667 0.00 0.00 43.34 6.46
2597 2885 5.106634 CCCAATTAATGAACGTTCGTGGTAA 60.107 40.000 23.05 17.90 0.00 2.85
2603 2891 3.426963 CCACCCCAATTAATGAACGTTCG 60.427 47.826 22.48 6.94 0.00 3.95
2619 2907 3.672503 AGGTTCCATGGCCACCCC 61.673 66.667 23.04 3.41 0.00 4.95
2620 2908 2.362889 CAGGTTCCATGGCCACCC 60.363 66.667 23.04 13.07 0.00 4.61
2622 2910 2.283101 TGCAGGTTCCATGGCCAC 60.283 61.111 8.16 6.09 0.00 5.01
2623 2911 2.036098 CTGCAGGTTCCATGGCCA 59.964 61.111 8.56 8.56 0.00 5.36
2624 2912 2.757099 CCTGCAGGTTCCATGGCC 60.757 66.667 25.53 3.12 0.00 5.36
2667 2955 0.462047 CCTTGCACATCCGGTACCTC 60.462 60.000 10.90 0.00 0.00 3.85
2838 3126 4.812476 TCATGGCCGAAGACGCCG 62.812 66.667 0.00 0.00 38.08 6.46
2839 3127 3.195698 GTCATGGCCGAAGACGCC 61.196 66.667 0.00 0.00 38.29 5.68
2840 3128 3.554692 CGTCATGGCCGAAGACGC 61.555 66.667 24.72 1.58 46.74 5.19
2842 3130 2.511600 CCCGTCATGGCCGAAGAC 60.512 66.667 10.93 10.93 35.87 3.01
2843 3131 3.781307 CCCCGTCATGGCCGAAGA 61.781 66.667 0.00 0.00 35.87 2.87
3268 3572 3.376935 AAGACGCCGGATCAGCTGG 62.377 63.158 15.13 0.00 46.56 4.85
3270 3574 2.185350 CAAGACGCCGGATCAGCT 59.815 61.111 5.05 0.00 0.00 4.24
3271 3575 3.567797 GCAAGACGCCGGATCAGC 61.568 66.667 5.05 6.74 32.94 4.26
3272 3576 3.257561 CGCAAGACGCCGGATCAG 61.258 66.667 5.05 0.00 43.02 2.90
3282 3586 0.294887 CATACGAGAACGCGCAAGAC 59.705 55.000 5.73 0.00 43.96 3.01
3291 3599 3.186909 TGCTATGCACACATACGAGAAC 58.813 45.455 0.00 0.00 37.74 3.01
3331 3643 6.426937 GGTACAAGTGCTCAAAAGTAGATCAA 59.573 38.462 0.00 0.00 0.00 2.57
3332 3644 5.932303 GGTACAAGTGCTCAAAAGTAGATCA 59.068 40.000 0.00 0.00 0.00 2.92
3334 3646 5.246307 GGGTACAAGTGCTCAAAAGTAGAT 58.754 41.667 0.00 0.00 0.00 1.98
3335 3647 4.638304 GGGTACAAGTGCTCAAAAGTAGA 58.362 43.478 0.00 0.00 0.00 2.59
3336 3648 3.432252 CGGGTACAAGTGCTCAAAAGTAG 59.568 47.826 0.00 0.00 0.00 2.57
3338 3650 2.158871 TCGGGTACAAGTGCTCAAAAGT 60.159 45.455 0.00 0.00 0.00 2.66
3344 3666 3.521947 AATAGTCGGGTACAAGTGCTC 57.478 47.619 0.00 0.00 0.00 4.26
3404 3726 2.205022 ATATCATGCAATCCCCACGG 57.795 50.000 0.00 0.00 0.00 4.94
3405 3727 3.189910 CAGAATATCATGCAATCCCCACG 59.810 47.826 0.00 0.00 0.00 4.94
3427 3749 6.020520 GCAAAGAGCGTTCTACTACTATCAAC 60.021 42.308 0.90 0.00 31.96 3.18
3451 3773 2.416547 CGTATGCATTGTAGCCCATAGC 59.583 50.000 3.54 0.00 44.25 2.97
3452 3774 3.925379 TCGTATGCATTGTAGCCCATAG 58.075 45.455 3.54 0.00 0.00 2.23
3453 3775 4.344359 TTCGTATGCATTGTAGCCCATA 57.656 40.909 3.54 0.00 0.00 2.74
3454 3776 2.928801 TCGTATGCATTGTAGCCCAT 57.071 45.000 3.54 0.00 0.00 4.00
3455 3777 2.700722 TTCGTATGCATTGTAGCCCA 57.299 45.000 3.54 0.00 0.00 5.36
3456 3778 2.157668 CGATTCGTATGCATTGTAGCCC 59.842 50.000 3.54 0.00 0.00 5.19
3457 3779 2.411547 GCGATTCGTATGCATTGTAGCC 60.412 50.000 3.54 0.00 0.00 3.93
3458 3780 2.718789 CGCGATTCGTATGCATTGTAGC 60.719 50.000 3.54 1.38 0.00 3.58
3459 3781 2.718789 GCGCGATTCGTATGCATTGTAG 60.719 50.000 12.10 0.00 41.07 2.74
3460 3782 1.191425 GCGCGATTCGTATGCATTGTA 59.809 47.619 12.10 0.00 41.07 2.41
3461 3783 0.042188 GCGCGATTCGTATGCATTGT 60.042 50.000 12.10 0.00 41.07 2.71
3462 3784 0.722469 GGCGCGATTCGTATGCATTG 60.722 55.000 12.10 0.00 41.07 2.82
3463 3785 1.157257 TGGCGCGATTCGTATGCATT 61.157 50.000 12.10 0.00 41.07 3.56
3464 3786 1.157257 TTGGCGCGATTCGTATGCAT 61.157 50.000 12.10 3.79 41.07 3.96
3465 3787 1.761244 CTTGGCGCGATTCGTATGCA 61.761 55.000 12.10 0.00 41.07 3.96
3466 3788 1.083401 CTTGGCGCGATTCGTATGC 60.083 57.895 12.10 9.36 41.07 3.14
3467 3789 1.564622 CCTTGGCGCGATTCGTATG 59.435 57.895 12.10 0.00 41.07 2.39
3468 3790 2.244651 GCCTTGGCGCGATTCGTAT 61.245 57.895 12.10 0.00 41.07 3.06
3469 3791 2.888534 GCCTTGGCGCGATTCGTA 60.889 61.111 12.10 0.00 41.07 3.43
3486 3808 4.899239 GGGACTGGCATCCTCGCG 62.899 72.222 0.00 0.00 38.95 5.87
3487 3809 3.329542 TTGGGACTGGCATCCTCGC 62.330 63.158 13.32 6.53 38.95 5.03
3488 3810 1.450312 GTTGGGACTGGCATCCTCG 60.450 63.158 13.32 0.00 38.95 4.63
3489 3811 1.450312 CGTTGGGACTGGCATCCTC 60.450 63.158 13.32 6.68 38.95 3.71
3490 3812 1.779061 AACGTTGGGACTGGCATCCT 61.779 55.000 0.00 0.00 38.95 3.24
3491 3813 0.893727 AAACGTTGGGACTGGCATCC 60.894 55.000 0.00 7.25 38.13 3.51
3492 3814 0.958822 AAAACGTTGGGACTGGCATC 59.041 50.000 0.00 0.00 0.00 3.91
3493 3815 0.673437 CAAAACGTTGGGACTGGCAT 59.327 50.000 0.00 0.00 0.00 4.40
3494 3816 2.111162 CAAAACGTTGGGACTGGCA 58.889 52.632 0.00 0.00 0.00 4.92
3503 3825 2.559998 ACTGCTTGACCAAAACGTTG 57.440 45.000 0.00 0.00 34.25 4.10
3504 3826 4.705337 TTAACTGCTTGACCAAAACGTT 57.295 36.364 0.00 0.00 0.00 3.99
3505 3827 4.606961 CATTAACTGCTTGACCAAAACGT 58.393 39.130 0.00 0.00 0.00 3.99
3519 3841 8.136165 AGATTACTACCGACTTAGCATTAACTG 58.864 37.037 0.00 0.00 0.00 3.16
3520 3842 8.235359 AGATTACTACCGACTTAGCATTAACT 57.765 34.615 0.00 0.00 0.00 2.24
3521 3843 9.609950 CTAGATTACTACCGACTTAGCATTAAC 57.390 37.037 0.00 0.00 0.00 2.01
3522 3844 8.790718 CCTAGATTACTACCGACTTAGCATTAA 58.209 37.037 0.00 0.00 0.00 1.40
3523 3845 7.941238 ACCTAGATTACTACCGACTTAGCATTA 59.059 37.037 0.00 0.00 0.00 1.90
3524 3846 6.776603 ACCTAGATTACTACCGACTTAGCATT 59.223 38.462 0.00 0.00 0.00 3.56
3525 3847 6.305411 ACCTAGATTACTACCGACTTAGCAT 58.695 40.000 0.00 0.00 0.00 3.79
3526 3848 5.688807 ACCTAGATTACTACCGACTTAGCA 58.311 41.667 0.00 0.00 0.00 3.49
3527 3849 6.631971 AACCTAGATTACTACCGACTTAGC 57.368 41.667 0.00 0.00 0.00 3.09
3528 3850 8.288913 GCTAAACCTAGATTACTACCGACTTAG 58.711 40.741 0.00 0.00 0.00 2.18
3529 3851 7.775093 TGCTAAACCTAGATTACTACCGACTTA 59.225 37.037 0.00 0.00 0.00 2.24
3530 3852 6.604795 TGCTAAACCTAGATTACTACCGACTT 59.395 38.462 0.00 0.00 0.00 3.01
3531 3853 6.125029 TGCTAAACCTAGATTACTACCGACT 58.875 40.000 0.00 0.00 0.00 4.18
3532 3854 6.382869 TGCTAAACCTAGATTACTACCGAC 57.617 41.667 0.00 0.00 0.00 4.79
3533 3855 8.737175 CATATGCTAAACCTAGATTACTACCGA 58.263 37.037 0.00 0.00 0.00 4.69
3534 3856 7.488471 GCATATGCTAAACCTAGATTACTACCG 59.512 40.741 20.64 0.00 38.21 4.02
3535 3857 8.311836 TGCATATGCTAAACCTAGATTACTACC 58.688 37.037 27.13 0.00 42.66 3.18
3536 3858 9.877178 ATGCATATGCTAAACCTAGATTACTAC 57.123 33.333 27.13 0.00 42.66 2.73
3538 3860 9.442047 GAATGCATATGCTAAACCTAGATTACT 57.558 33.333 27.13 0.00 42.66 2.24
3539 3861 9.219603 TGAATGCATATGCTAAACCTAGATTAC 57.780 33.333 27.13 10.21 42.66 1.89
3540 3862 9.791801 TTGAATGCATATGCTAAACCTAGATTA 57.208 29.630 27.13 3.67 42.66 1.75
3541 3863 8.696043 TTGAATGCATATGCTAAACCTAGATT 57.304 30.769 27.13 15.06 42.66 2.40
3542 3864 8.696043 TTTGAATGCATATGCTAAACCTAGAT 57.304 30.769 27.13 7.35 42.66 1.98
3543 3865 8.696043 ATTTGAATGCATATGCTAAACCTAGA 57.304 30.769 27.13 5.16 42.66 2.43
3545 3867 9.573166 ACTATTTGAATGCATATGCTAAACCTA 57.427 29.630 27.13 6.67 42.66 3.08
3546 3868 8.469309 ACTATTTGAATGCATATGCTAAACCT 57.531 30.769 27.13 11.85 42.66 3.50
3608 3930 7.543520 GTCTCATGACGATATTGAGCATCATTA 59.456 37.037 0.00 0.00 38.08 1.90
3609 3931 6.368243 GTCTCATGACGATATTGAGCATCATT 59.632 38.462 0.00 0.00 38.08 2.57
3610 3932 5.868258 GTCTCATGACGATATTGAGCATCAT 59.132 40.000 0.00 0.00 38.08 2.45
3611 3933 5.010415 AGTCTCATGACGATATTGAGCATCA 59.990 40.000 0.00 0.00 45.93 3.07
3612 3934 5.760193 GTCTCATGACGATATTGAGCATC 57.240 43.478 0.00 0.00 37.41 3.91
3625 3947 9.717942 AATTATTCTGCCTTATAGTCTCATGAC 57.282 33.333 0.00 0.00 43.22 3.06
3633 3955 8.774586 CGCACTAAAATTATTCTGCCTTATAGT 58.225 33.333 0.00 0.00 0.00 2.12
3634 3956 8.774586 ACGCACTAAAATTATTCTGCCTTATAG 58.225 33.333 0.00 0.00 0.00 1.31
3635 3957 8.671384 ACGCACTAAAATTATTCTGCCTTATA 57.329 30.769 0.00 0.00 0.00 0.98
3636 3958 7.568199 ACGCACTAAAATTATTCTGCCTTAT 57.432 32.000 0.00 0.00 0.00 1.73
3637 3959 6.995511 ACGCACTAAAATTATTCTGCCTTA 57.004 33.333 0.00 0.00 0.00 2.69
3638 3960 5.897377 ACGCACTAAAATTATTCTGCCTT 57.103 34.783 0.00 0.00 0.00 4.35
3639 3961 5.414454 TGAACGCACTAAAATTATTCTGCCT 59.586 36.000 0.00 0.00 0.00 4.75
3640 3962 5.636837 TGAACGCACTAAAATTATTCTGCC 58.363 37.500 0.00 0.00 0.00 4.85
3641 3963 8.835467 TTATGAACGCACTAAAATTATTCTGC 57.165 30.769 0.00 0.00 0.00 4.26
3644 3966 9.434559 GGTCTTATGAACGCACTAAAATTATTC 57.565 33.333 0.00 0.00 0.00 1.75
3645 3967 8.952278 TGGTCTTATGAACGCACTAAAATTATT 58.048 29.630 0.00 0.00 31.14 1.40
3646 3968 8.395633 GTGGTCTTATGAACGCACTAAAATTAT 58.604 33.333 2.51 0.00 39.97 1.28
3647 3969 7.388224 TGTGGTCTTATGAACGCACTAAAATTA 59.612 33.333 5.84 0.00 44.44 1.40
3648 3970 6.205853 TGTGGTCTTATGAACGCACTAAAATT 59.794 34.615 5.84 0.00 44.44 1.82
3649 3971 5.703592 TGTGGTCTTATGAACGCACTAAAAT 59.296 36.000 5.84 0.00 44.44 1.82
3650 3972 5.057819 TGTGGTCTTATGAACGCACTAAAA 58.942 37.500 5.84 0.00 44.44 1.52
3651 3973 4.633175 TGTGGTCTTATGAACGCACTAAA 58.367 39.130 5.84 0.00 44.44 1.85
3652 3974 4.260139 TGTGGTCTTATGAACGCACTAA 57.740 40.909 5.84 0.00 44.44 2.24
3653 3975 3.945981 TGTGGTCTTATGAACGCACTA 57.054 42.857 5.84 0.00 44.44 2.74
3654 3976 2.831685 TGTGGTCTTATGAACGCACT 57.168 45.000 5.84 0.00 44.44 4.40
3674 3996 8.512138 CAAACTTCCTATCGAGTGGTTATTTTT 58.488 33.333 6.41 0.05 0.00 1.94
3675 3997 7.881232 TCAAACTTCCTATCGAGTGGTTATTTT 59.119 33.333 6.41 2.08 0.00 1.82
3676 3998 7.391620 TCAAACTTCCTATCGAGTGGTTATTT 58.608 34.615 6.41 3.72 0.00 1.40
3677 3999 6.942976 TCAAACTTCCTATCGAGTGGTTATT 58.057 36.000 6.41 0.00 0.00 1.40
3678 4000 6.540438 TCAAACTTCCTATCGAGTGGTTAT 57.460 37.500 6.41 0.00 0.00 1.89
3679 4001 5.988310 TCAAACTTCCTATCGAGTGGTTA 57.012 39.130 6.41 0.00 0.00 2.85
3680 4002 4.884668 TCAAACTTCCTATCGAGTGGTT 57.115 40.909 6.41 0.00 0.00 3.67
3681 4003 4.884668 TTCAAACTTCCTATCGAGTGGT 57.115 40.909 6.41 0.00 0.00 4.16
3682 4004 4.392138 GGTTTCAAACTTCCTATCGAGTGG 59.608 45.833 0.00 0.00 0.00 4.00
3683 4005 4.994852 TGGTTTCAAACTTCCTATCGAGTG 59.005 41.667 0.00 0.00 0.00 3.51
3684 4006 5.223449 TGGTTTCAAACTTCCTATCGAGT 57.777 39.130 0.00 0.00 0.00 4.18
3685 4007 6.554334 TTTGGTTTCAAACTTCCTATCGAG 57.446 37.500 0.00 0.00 37.89 4.04
3686 4008 6.514376 GCTTTTGGTTTCAAACTTCCTATCGA 60.514 38.462 0.00 0.00 41.97 3.59
3687 4009 5.629435 GCTTTTGGTTTCAAACTTCCTATCG 59.371 40.000 0.00 0.00 41.97 2.92
3688 4010 5.629435 CGCTTTTGGTTTCAAACTTCCTATC 59.371 40.000 0.00 0.00 41.97 2.08
3689 4011 5.528870 CGCTTTTGGTTTCAAACTTCCTAT 58.471 37.500 0.00 0.00 41.97 2.57
3690 4012 4.735283 GCGCTTTTGGTTTCAAACTTCCTA 60.735 41.667 0.00 0.00 41.97 2.94
3691 4013 3.780902 CGCTTTTGGTTTCAAACTTCCT 58.219 40.909 0.00 0.00 41.97 3.36
3692 4014 2.284150 GCGCTTTTGGTTTCAAACTTCC 59.716 45.455 0.00 0.00 41.97 3.46
3693 4015 2.926838 TGCGCTTTTGGTTTCAAACTTC 59.073 40.909 9.73 0.00 41.97 3.01
3694 4016 2.929398 CTGCGCTTTTGGTTTCAAACTT 59.071 40.909 9.73 0.00 41.97 2.66
3695 4017 2.539476 CTGCGCTTTTGGTTTCAAACT 58.461 42.857 9.73 0.00 41.97 2.66
3696 4018 1.005032 GCTGCGCTTTTGGTTTCAAAC 60.005 47.619 9.73 0.00 41.97 2.93
3697 4019 1.285578 GCTGCGCTTTTGGTTTCAAA 58.714 45.000 9.73 0.00 40.71 2.69
3698 4020 0.529555 GGCTGCGCTTTTGGTTTCAA 60.530 50.000 9.73 0.00 0.00 2.69
3699 4021 1.067250 GGCTGCGCTTTTGGTTTCA 59.933 52.632 9.73 0.00 0.00 2.69
3700 4022 0.249447 AAGGCTGCGCTTTTGGTTTC 60.249 50.000 9.73 0.00 0.00 2.78
3701 4023 0.530431 CAAGGCTGCGCTTTTGGTTT 60.530 50.000 9.73 0.00 0.00 3.27
3702 4024 1.067916 CAAGGCTGCGCTTTTGGTT 59.932 52.632 9.73 0.00 0.00 3.67
3703 4025 2.730094 CAAGGCTGCGCTTTTGGT 59.270 55.556 9.73 0.00 0.00 3.67
3704 4026 2.048877 CCAAGGCTGCGCTTTTGG 60.049 61.111 9.73 13.08 37.10 3.28
3705 4027 1.080974 CTCCAAGGCTGCGCTTTTG 60.081 57.895 9.73 7.80 0.00 2.44
3706 4028 2.924105 GCTCCAAGGCTGCGCTTTT 61.924 57.895 9.73 0.00 0.00 2.27
3707 4029 3.368571 GCTCCAAGGCTGCGCTTT 61.369 61.111 9.73 0.00 0.00 3.51
3708 4030 4.648626 TGCTCCAAGGCTGCGCTT 62.649 61.111 9.73 0.00 0.00 4.68
3712 4034 4.357279 ACCCTGCTCCAAGGCTGC 62.357 66.667 0.00 0.00 35.85 5.25
3713 4035 2.360852 CACCCTGCTCCAAGGCTG 60.361 66.667 0.00 0.00 35.85 4.85
3714 4036 4.357279 GCACCCTGCTCCAAGGCT 62.357 66.667 0.00 0.00 40.96 4.58
3722 4044 0.475906 GATGGAATAGGCACCCTGCT 59.524 55.000 0.00 0.00 44.28 4.24
3725 4047 2.515429 ACATTGATGGAATAGGCACCCT 59.485 45.455 0.00 0.00 37.71 4.34
3734 4056 7.722949 ATCTGTTTTACCACATTGATGGAAT 57.277 32.000 10.89 0.00 43.02 3.01
3736 4058 8.685427 CATTATCTGTTTTACCACATTGATGGA 58.315 33.333 10.89 0.00 43.02 3.41
3754 4076 9.202273 GCTTCCTACTAACTTCATCATTATCTG 57.798 37.037 0.00 0.00 0.00 2.90
3765 4087 7.958053 TGTAAAAGTGCTTCCTACTAACTTC 57.042 36.000 0.00 0.00 30.95 3.01
3801 4123 8.432013 TGAATACATGTGATAAACTATGCTCCT 58.568 33.333 9.11 0.00 0.00 3.69
3815 4137 6.156083 TCCACTGTCCTATTGAATACATGTGA 59.844 38.462 9.11 0.00 0.00 3.58
3817 4139 6.560003 TCCACTGTCCTATTGAATACATGT 57.440 37.500 2.69 2.69 0.00 3.21
3820 4142 8.328758 AGAAAATCCACTGTCCTATTGAATACA 58.671 33.333 0.00 0.00 0.00 2.29
3821 4143 8.616076 CAGAAAATCCACTGTCCTATTGAATAC 58.384 37.037 0.00 0.00 0.00 1.89
3829 4151 2.912956 AGCCAGAAAATCCACTGTCCTA 59.087 45.455 0.00 0.00 32.93 2.94
3836 4158 3.679389 TCTCTTGAGCCAGAAAATCCAC 58.321 45.455 0.00 0.00 0.00 4.02
3839 4161 6.566197 TTCTTTCTCTTGAGCCAGAAAATC 57.434 37.500 8.11 0.00 38.00 2.17
3849 4171 7.923888 TGAAGTGAATGTTTCTTTCTCTTGAG 58.076 34.615 13.32 0.00 37.16 3.02
3873 4198 7.555306 ACTTGATGATGTCTTGATTCTCATG 57.445 36.000 0.00 0.00 0.00 3.07
3881 4207 4.644498 TGCTGAACTTGATGATGTCTTGA 58.356 39.130 0.00 0.00 0.00 3.02
3901 4227 4.500375 GGCCTTAGAATTTCATGACCATGC 60.500 45.833 0.00 0.00 38.65 4.06
3912 4238 4.423625 ACTAGATGCGGCCTTAGAATTT 57.576 40.909 0.00 0.00 0.00 1.82
3913 4239 4.141711 TGAACTAGATGCGGCCTTAGAATT 60.142 41.667 0.00 0.00 0.00 2.17
3917 4243 2.101582 ACTGAACTAGATGCGGCCTTAG 59.898 50.000 0.00 0.00 0.00 2.18
3930 4256 7.276658 TGTGGTCTTATGAACAAACTGAACTA 58.723 34.615 0.00 0.00 42.15 2.24
3939 4265 7.575414 TTAGCTTTTGTGGTCTTATGAACAA 57.425 32.000 0.00 0.00 42.15 2.83
3947 4273 5.827797 TCAAGTGATTAGCTTTTGTGGTCTT 59.172 36.000 0.00 0.00 0.00 3.01
4003 4329 6.347888 GCTCCTACTATTAGTACTTGCTCTCG 60.348 46.154 0.00 0.00 0.00 4.04
4107 4435 8.375493 TGTTCTGGTTGAGATATACTAAAGGT 57.625 34.615 0.00 0.00 0.00 3.50
4188 4516 6.343703 TGATTCTCTATCAATGTGACAGTGG 58.656 40.000 13.37 0.00 40.29 4.00
4205 4533 8.447053 GTTTCCTCTTGTAACAAGATGATTCTC 58.553 37.037 0.00 0.00 0.00 2.87
4224 4552 1.069227 GTGGTGATTGTGCGTTTCCTC 60.069 52.381 0.00 0.00 0.00 3.71
4229 4558 1.519408 GTAGGTGGTGATTGTGCGTT 58.481 50.000 0.00 0.00 0.00 4.84
4231 4560 0.321210 TGGTAGGTGGTGATTGTGCG 60.321 55.000 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.