Multiple sequence alignment - TraesCS7A01G182600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G182600 chr7A 100.000 3179 0 0 1 3179 137781759 137778581 0.000000e+00 5871
1 TraesCS7A01G182600 chr7B 90.199 2418 148 27 514 2913 102267578 102265232 0.000000e+00 3070
2 TraesCS7A01G182600 chr7B 91.904 1297 80 11 902 2183 102649419 102648133 0.000000e+00 1790
3 TraesCS7A01G182600 chr7B 93.085 188 9 3 1 186 102269083 102268898 4.040000e-69 272
4 TraesCS7A01G182600 chr7D 95.731 1757 69 4 928 2678 137571155 137569399 0.000000e+00 2824
5 TraesCS7A01G182600 chr7D 94.074 945 50 1 985 1929 137764434 137763496 0.000000e+00 1430
6 TraesCS7A01G182600 chr7D 84.447 1003 118 24 1 988 137767828 137766849 0.000000e+00 953
7 TraesCS7A01G182600 chr7D 95.564 541 15 4 937 1471 137608029 137607492 0.000000e+00 857
8 TraesCS7A01G182600 chr7D 83.110 746 92 20 1 719 137610678 137609940 0.000000e+00 649
9 TraesCS7A01G182600 chr7D 95.225 356 14 1 2637 2989 137569403 137569048 7.700000e-156 560
10 TraesCS7A01G182600 chr7D 84.466 412 46 8 1 408 137571972 137571575 1.070000e-104 390
11 TraesCS7A01G182600 chr7D 92.218 257 19 1 1926 2182 137717169 137716914 2.330000e-96 363
12 TraesCS7A01G182600 chr7D 87.197 289 29 3 649 930 137571565 137571278 3.960000e-84 322
13 TraesCS7A01G182600 chr7D 79.245 318 56 9 90 403 628167668 628167357 2.480000e-51 213
14 TraesCS7A01G182600 chr7D 85.644 202 6 9 2983 3162 137569003 137568803 1.160000e-44 191
15 TraesCS7A01G182600 chrUn 92.826 683 49 0 1463 2145 468058901 468059583 0.000000e+00 990
16 TraesCS7A01G182600 chrUn 95.194 541 17 4 937 1471 91673654 91673117 0.000000e+00 846
17 TraesCS7A01G182600 chrUn 83.747 886 111 19 1 859 91676878 91675999 0.000000e+00 808
18 TraesCS7A01G182600 chrUn 82.267 688 93 18 190 853 441249518 441250200 4.600000e-158 568
19 TraesCS7A01G182600 chr2B 77.901 629 125 10 1 622 563031524 563030903 2.310000e-101 379
20 TraesCS7A01G182600 chr6B 78.276 580 115 10 47 621 130973105 130973678 2.330000e-96 363
21 TraesCS7A01G182600 chr4D 76.757 370 77 5 1125 1491 78431894 78431531 6.960000e-47 198


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G182600 chr7A 137778581 137781759 3178 True 5871.0 5871 100.0000 1 3179 1 chr7A.!!$R1 3178
1 TraesCS7A01G182600 chr7B 102648133 102649419 1286 True 1790.0 1790 91.9040 902 2183 1 chr7B.!!$R1 1281
2 TraesCS7A01G182600 chr7B 102265232 102269083 3851 True 1671.0 3070 91.6420 1 2913 2 chr7B.!!$R2 2912
3 TraesCS7A01G182600 chr7D 137763496 137767828 4332 True 1191.5 1430 89.2605 1 1929 2 chr7D.!!$R5 1928
4 TraesCS7A01G182600 chr7D 137568803 137571972 3169 True 857.4 2824 89.6526 1 3162 5 chr7D.!!$R3 3161
5 TraesCS7A01G182600 chr7D 137607492 137610678 3186 True 753.0 857 89.3370 1 1471 2 chr7D.!!$R4 1470
6 TraesCS7A01G182600 chrUn 468058901 468059583 682 False 990.0 990 92.8260 1463 2145 1 chrUn.!!$F2 682
7 TraesCS7A01G182600 chrUn 91673117 91676878 3761 True 827.0 846 89.4705 1 1471 2 chrUn.!!$R1 1470
8 TraesCS7A01G182600 chrUn 441249518 441250200 682 False 568.0 568 82.2670 190 853 1 chrUn.!!$F1 663
9 TraesCS7A01G182600 chr2B 563030903 563031524 621 True 379.0 379 77.9010 1 622 1 chr2B.!!$R1 621
10 TraesCS7A01G182600 chr6B 130973105 130973678 573 False 363.0 363 78.2760 47 621 1 chr6B.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 1674 0.114364 ACATTGTTTCCCTCACCCCC 59.886 55.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2299 8444 0.179094 TCGCGGCGGTCAATAAGATT 60.179 50.0 23.46 0.0 0.0 2.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 30 3.882888 CACCCTACACACACAAAGAACAT 59.117 43.478 0.00 0.00 0.00 2.71
80 87 1.104577 ACGAAGATCTCCGGAGCTCC 61.105 60.000 27.50 23.79 37.20 4.70
113 120 0.756294 TGAACCTTGCGAGAAGACCA 59.244 50.000 1.22 0.00 0.00 4.02
178 186 3.378861 TCAACCATGGCATAATCACCA 57.621 42.857 13.04 0.00 41.06 4.17
204 212 2.231478 GCTACTCCCCTTTTTCTTTGCC 59.769 50.000 0.00 0.00 0.00 4.52
222 234 1.291877 CCCTGACGCCGAAAAGACAG 61.292 60.000 0.00 0.00 0.00 3.51
289 533 4.122776 CTGTGGCTTTGAGTATCGCTATT 58.877 43.478 0.00 0.00 38.61 1.73
290 534 5.068591 TCTGTGGCTTTGAGTATCGCTATTA 59.931 40.000 0.00 0.00 38.61 0.98
291 535 5.853936 TGTGGCTTTGAGTATCGCTATTAT 58.146 37.500 0.00 0.00 38.61 1.28
292 536 5.696270 TGTGGCTTTGAGTATCGCTATTATG 59.304 40.000 0.00 0.00 38.61 1.90
293 537 5.696724 GTGGCTTTGAGTATCGCTATTATGT 59.303 40.000 0.00 0.00 38.61 2.29
294 538 5.696270 TGGCTTTGAGTATCGCTATTATGTG 59.304 40.000 0.00 0.00 38.61 3.21
295 539 5.389935 GGCTTTGAGTATCGCTATTATGTGC 60.390 44.000 0.00 0.00 38.61 4.57
303 549 1.523758 GCTATTATGTGCCCCTTCCG 58.476 55.000 0.00 0.00 0.00 4.30
325 571 3.181427 GGGTAGAAGAGAGCTAGGATCCA 60.181 52.174 15.82 0.00 0.00 3.41
356 602 2.954684 CGGCCAGGTCAACTGCCTA 61.955 63.158 2.24 0.00 46.14 3.93
400 646 5.450171 CAGCAACATCACAAAGAAAGAGAG 58.550 41.667 0.00 0.00 0.00 3.20
409 655 9.017669 CATCACAAAGAAAGAGAGAAAACAAAG 57.982 33.333 0.00 0.00 0.00 2.77
410 656 7.538575 TCACAAAGAAAGAGAGAAAACAAAGG 58.461 34.615 0.00 0.00 0.00 3.11
441 688 3.132289 ACACACTCACGAGAAGGAAGAAA 59.868 43.478 0.00 0.00 0.00 2.52
462 709 1.633774 ATCTCCGTCTCCACACAACT 58.366 50.000 0.00 0.00 0.00 3.16
466 713 0.388134 CCGTCTCCACACAACTACCG 60.388 60.000 0.00 0.00 0.00 4.02
487 807 3.834799 ATCCGAGGACCGAACCGC 61.835 66.667 0.00 0.00 41.76 5.68
534 1546 2.048444 TAGCCTACGACCTCAACGAT 57.952 50.000 0.00 0.00 34.70 3.73
568 1581 1.693640 CCCCTGTTGGCTCCAAGAT 59.306 57.895 0.83 0.00 36.52 2.40
578 1612 0.455005 GCTCCAAGATGAAGGCAAGC 59.545 55.000 0.00 0.00 0.00 4.01
599 1633 0.326927 CCCCACCTAACCGTGAACAT 59.673 55.000 0.00 0.00 35.68 2.71
602 1636 2.235402 CCCACCTAACCGTGAACATAGT 59.765 50.000 0.00 0.00 35.68 2.12
612 1646 4.181578 CCGTGAACATAGTCCGAGAAAAT 58.818 43.478 0.00 0.00 0.00 1.82
625 1659 8.567285 AGTCCGAGAAAATTTATTCAGACATT 57.433 30.769 15.21 0.75 32.79 2.71
628 1662 8.792633 TCCGAGAAAATTTATTCAGACATTGTT 58.207 29.630 0.00 0.00 0.00 2.83
636 1670 6.817765 TTATTCAGACATTGTTTCCCTCAC 57.182 37.500 0.00 0.00 0.00 3.51
640 1674 0.114364 ACATTGTTTCCCTCACCCCC 59.886 55.000 0.00 0.00 0.00 5.40
647 1681 2.042930 CCCTCACCCCCTAAGCCT 59.957 66.667 0.00 0.00 0.00 4.58
665 1699 1.768870 CCTAATGAGAACCCACCCGAT 59.231 52.381 0.00 0.00 0.00 4.18
676 1710 1.529226 CCACCCGATGCACAACTTTA 58.471 50.000 0.00 0.00 0.00 1.85
728 1764 1.893210 CGACAGAGGGAGAGGGAACTT 60.893 57.143 0.00 0.00 44.43 2.66
732 1768 1.229209 AGGGAGAGGGAACTTGCGA 60.229 57.895 0.00 0.00 44.43 5.10
733 1769 1.079057 GGGAGAGGGAACTTGCGAC 60.079 63.158 0.00 0.00 44.43 5.19
735 1771 1.585006 GAGAGGGAACTTGCGACGA 59.415 57.895 0.00 0.00 44.43 4.20
774 1810 1.838568 GAACGCGGTCGCCTTCTTTT 61.839 55.000 9.12 0.00 39.84 2.27
880 1987 3.878086 TGAAGTGCTCAATGACGAAAC 57.122 42.857 0.00 0.00 0.00 2.78
909 2016 6.732154 CCAGACTATGGCATCAAATTAACTG 58.268 40.000 1.65 4.15 43.83 3.16
914 4332 4.707030 TGGCATCAAATTAACTGCTCAG 57.293 40.909 6.15 0.00 35.03 3.35
942 4485 0.970937 CGAACTCCACTGGCTCCCTA 60.971 60.000 0.00 0.00 0.00 3.53
943 4486 0.827368 GAACTCCACTGGCTCCCTAG 59.173 60.000 0.00 0.00 0.00 3.02
1038 7168 0.033894 GGTTCCTCTCTCTCCTCCGT 60.034 60.000 0.00 0.00 0.00 4.69
1569 7705 1.526887 CGTGACATTGACACAGTGGTC 59.473 52.381 17.16 2.84 38.04 4.02
1614 7750 0.174845 GCTGCGGGTTAAAAATCCCC 59.825 55.000 0.00 0.00 40.54 4.81
1746 7882 2.287188 CCAATTCATGTATGCGCTCACC 60.287 50.000 9.73 0.00 0.00 4.02
1833 7969 2.609916 CTGCTCTGATGACATGCTGAAG 59.390 50.000 0.00 0.00 31.70 3.02
2050 8186 5.321959 TCTGAGTTCTGACTATTGCTCAG 57.678 43.478 11.74 11.74 46.51 3.35
2053 8189 4.524328 TGAGTTCTGACTATTGCTCAGTGA 59.476 41.667 0.00 0.00 37.12 3.41
2079 8215 1.202313 GCGAGCGAGAGGTACTTCAAT 60.202 52.381 7.82 0.00 45.11 2.57
2096 8232 7.365840 ACTTCAATTCAAGGTTTATCGACTC 57.634 36.000 0.00 0.00 0.00 3.36
2202 8338 7.556275 TGACACATTTTAGGGATATTGAAGGTC 59.444 37.037 0.00 0.00 0.00 3.85
2219 8362 8.696043 TTGAAGGTCAATATATTTCCTCATGG 57.304 34.615 15.30 0.00 30.26 3.66
2220 8363 6.716628 TGAAGGTCAATATATTTCCTCATGGC 59.283 38.462 15.30 0.00 0.00 4.40
2221 8364 5.574188 AGGTCAATATATTTCCTCATGGCC 58.426 41.667 11.22 0.00 0.00 5.36
2222 8365 4.396166 GGTCAATATATTTCCTCATGGCCG 59.604 45.833 0.00 0.00 0.00 6.13
2259 8402 3.499918 GCACTGCTGTTGTCTTTGTATCT 59.500 43.478 0.00 0.00 0.00 1.98
2299 8444 3.133901 TGACTGAAACTGAACTGCCACTA 59.866 43.478 0.00 0.00 0.00 2.74
2354 8499 8.984891 TTGCTGAAACATATGAAATGGTTAAG 57.015 30.769 10.38 0.00 0.00 1.85
2355 8501 8.347004 TGCTGAAACATATGAAATGGTTAAGA 57.653 30.769 10.38 0.00 0.00 2.10
2390 8536 6.039270 TGTTCCCATCTCTTACAGTTTTGTTG 59.961 38.462 0.00 0.00 38.76 3.33
2466 8615 9.469807 TGAAATTAAATGTTGTATTCGCTGTTT 57.530 25.926 0.00 0.00 0.00 2.83
2516 8665 1.267532 CGCCGTGAATCTGTATGTTGC 60.268 52.381 0.00 0.00 0.00 4.17
2517 8666 2.009774 GCCGTGAATCTGTATGTTGCT 58.990 47.619 0.00 0.00 0.00 3.91
2518 8667 2.030946 GCCGTGAATCTGTATGTTGCTC 59.969 50.000 0.00 0.00 0.00 4.26
2519 8668 3.261580 CCGTGAATCTGTATGTTGCTCA 58.738 45.455 0.00 0.00 0.00 4.26
2600 8754 3.054139 TGAGAGGGAGGGAAATGAATGTG 60.054 47.826 0.00 0.00 0.00 3.21
2705 8896 2.198287 TATAGGGCGTCACCGGAGC 61.198 63.158 9.46 8.02 40.62 4.70
2734 8926 3.311110 GGTCCTCTGCCGTCCACA 61.311 66.667 0.00 0.00 0.00 4.17
2737 8929 4.742201 CCTCTGCCGTCCACACCG 62.742 72.222 0.00 0.00 0.00 4.94
2746 8938 0.389296 CGTCCACACCGTCAGCATTA 60.389 55.000 0.00 0.00 0.00 1.90
2770 8962 4.772886 ACCAAAGGTGTAGTTCTGAACT 57.227 40.909 24.80 24.80 39.02 3.01
2866 9058 4.207891 ACCTGAGAACATCATGGTGTAC 57.792 45.455 13.06 7.87 37.76 2.90
2884 9076 1.531423 ACCTGCTGCACATCAAGAAG 58.469 50.000 0.00 0.00 0.00 2.85
2899 9091 1.473258 AGAAGAGAGAGCTGCATCGT 58.527 50.000 1.02 0.00 0.00 3.73
2948 9143 7.156876 ACTGAGAAGATTGTTCTGTCTAGAG 57.843 40.000 0.03 0.00 33.70 2.43
2953 9148 6.723977 AGAAGATTGTTCTGTCTAGAGGACTT 59.276 38.462 0.00 0.00 44.74 3.01
2969 9164 5.310857 AGAGGACTTAGTTCCTGTGGATTTT 59.689 40.000 7.83 0.00 46.80 1.82
3066 9333 2.755103 GGGTATGTTTCTTCCAGCCAAG 59.245 50.000 0.00 0.00 0.00 3.61
3077 9344 4.404691 AGCCAAGCTGTAGCAACC 57.595 55.556 6.65 0.00 45.16 3.77
3085 9352 1.089920 GCTGTAGCAACCATGACAGG 58.910 55.000 10.84 0.00 39.76 4.00
3112 9379 4.389576 CACGCGTCAGCCAAAGCC 62.390 66.667 9.86 0.00 41.25 4.35
3121 9388 2.266689 GCCAAAGCCCAAGCATGG 59.733 61.111 0.00 0.00 45.95 3.66
3162 9429 2.737252 CACGTCTAGCTCCTTTGGTTTC 59.263 50.000 0.00 0.00 0.00 2.78
3163 9430 2.633481 ACGTCTAGCTCCTTTGGTTTCT 59.367 45.455 0.00 0.00 0.00 2.52
3164 9431 3.254892 CGTCTAGCTCCTTTGGTTTCTC 58.745 50.000 0.00 0.00 0.00 2.87
3165 9432 3.056465 CGTCTAGCTCCTTTGGTTTCTCT 60.056 47.826 0.00 0.00 0.00 3.10
3166 9433 4.561734 CGTCTAGCTCCTTTGGTTTCTCTT 60.562 45.833 0.00 0.00 0.00 2.85
3167 9434 5.309638 GTCTAGCTCCTTTGGTTTCTCTTT 58.690 41.667 0.00 0.00 0.00 2.52
3168 9435 5.180304 GTCTAGCTCCTTTGGTTTCTCTTTG 59.820 44.000 0.00 0.00 0.00 2.77
3169 9436 3.225940 AGCTCCTTTGGTTTCTCTTTGG 58.774 45.455 0.00 0.00 0.00 3.28
3170 9437 2.959030 GCTCCTTTGGTTTCTCTTTGGT 59.041 45.455 0.00 0.00 0.00 3.67
3171 9438 3.384789 GCTCCTTTGGTTTCTCTTTGGTT 59.615 43.478 0.00 0.00 0.00 3.67
3172 9439 4.141937 GCTCCTTTGGTTTCTCTTTGGTTT 60.142 41.667 0.00 0.00 0.00 3.27
3173 9440 5.337578 TCCTTTGGTTTCTCTTTGGTTTG 57.662 39.130 0.00 0.00 0.00 2.93
3174 9441 5.020132 TCCTTTGGTTTCTCTTTGGTTTGA 58.980 37.500 0.00 0.00 0.00 2.69
3175 9442 5.127031 TCCTTTGGTTTCTCTTTGGTTTGAG 59.873 40.000 0.00 0.00 0.00 3.02
3176 9443 4.385358 TTGGTTTCTCTTTGGTTTGAGC 57.615 40.909 0.00 0.00 0.00 4.26
3177 9444 3.631250 TGGTTTCTCTTTGGTTTGAGCT 58.369 40.909 0.00 0.00 0.00 4.09
3178 9445 3.381272 TGGTTTCTCTTTGGTTTGAGCTG 59.619 43.478 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 30 5.136828 TGTTAGGGTGCTCTTCATTTTTCA 58.863 37.500 0.00 0.00 0.00 2.69
80 87 3.543680 AGGTTCAGGGATAATGACACG 57.456 47.619 0.00 0.00 0.00 4.49
88 95 1.860641 TCTCGCAAGGTTCAGGGATA 58.139 50.000 0.00 0.00 38.47 2.59
113 120 3.119029 GGTTGCATATTCTTGTGTGGCAT 60.119 43.478 0.00 0.00 0.00 4.40
178 186 2.649816 AGAAAAAGGGGAGTAGCATGGT 59.350 45.455 1.62 1.62 0.00 3.55
204 212 1.291877 CCTGTCTTTTCGGCGTCAGG 61.292 60.000 6.85 12.12 36.87 3.86
303 549 3.181427 TGGATCCTAGCTCTCTTCTACCC 60.181 52.174 14.23 0.00 0.00 3.69
356 602 2.037641 GGAAAAATGTCCTGCTTTGCCT 59.962 45.455 0.00 0.00 34.56 4.75
422 669 5.698545 AGATTTTTCTTCCTTCTCGTGAGTG 59.301 40.000 0.00 0.00 0.00 3.51
426 673 4.092091 CGGAGATTTTTCTTCCTTCTCGTG 59.908 45.833 0.00 0.00 34.89 4.35
441 688 2.368875 AGTTGTGTGGAGACGGAGATTT 59.631 45.455 0.00 0.00 0.00 2.17
462 709 2.836360 GTCCTCGGATGGGCGGTA 60.836 66.667 0.00 0.00 0.00 4.02
466 713 3.467226 TTCGGTCCTCGGATGGGC 61.467 66.667 0.00 0.00 39.77 5.36
503 823 4.189231 GTCGTAGGCTATGGTGTTTGAAT 58.811 43.478 13.58 0.00 0.00 2.57
505 825 2.093869 GGTCGTAGGCTATGGTGTTTGA 60.094 50.000 13.58 0.00 0.00 2.69
508 828 1.755380 GAGGTCGTAGGCTATGGTGTT 59.245 52.381 13.58 0.00 0.00 3.32
550 1563 0.682209 CATCTTGGAGCCAACAGGGG 60.682 60.000 0.00 0.00 37.04 4.79
554 1567 1.887956 GCCTTCATCTTGGAGCCAACA 60.888 52.381 0.00 0.00 0.00 3.33
578 1612 3.242897 TTCACGGTTAGGTGGGGCG 62.243 63.158 0.00 0.00 38.46 6.13
584 1618 2.165030 CGGACTATGTTCACGGTTAGGT 59.835 50.000 0.00 0.00 0.00 3.08
599 1633 9.667107 AATGTCTGAATAAATTTTCTCGGACTA 57.333 29.630 25.96 18.51 0.00 2.59
602 1636 8.335532 ACAATGTCTGAATAAATTTTCTCGGA 57.664 30.769 0.00 1.44 0.00 4.55
612 1646 6.208599 GGTGAGGGAAACAATGTCTGAATAAA 59.791 38.462 0.00 0.00 0.00 1.40
625 1659 1.368374 CTTAGGGGGTGAGGGAAACA 58.632 55.000 0.00 0.00 0.00 2.83
628 1662 1.618447 GGCTTAGGGGGTGAGGGAA 60.618 63.158 0.00 0.00 0.00 3.97
636 1670 2.106684 GGTTCTCATTAGGCTTAGGGGG 59.893 54.545 0.00 0.00 0.00 5.40
640 1674 3.433740 GGGTGGGTTCTCATTAGGCTTAG 60.434 52.174 0.00 0.00 0.00 2.18
647 1681 1.134220 GCATCGGGTGGGTTCTCATTA 60.134 52.381 0.00 0.00 0.00 1.90
701 1737 4.332543 TCCCTCTGTCGGCCCCTT 62.333 66.667 0.00 0.00 0.00 3.95
712 1748 1.261238 CGCAAGTTCCCTCTCCCTCT 61.261 60.000 0.00 0.00 0.00 3.69
732 1768 4.380628 GAGTGTCGTCGGCGTCGT 62.381 66.667 24.03 6.75 39.49 4.34
733 1769 3.867226 TTGAGTGTCGTCGGCGTCG 62.867 63.158 19.85 19.85 39.49 5.12
735 1771 1.660575 CTTTGAGTGTCGTCGGCGT 60.661 57.895 10.18 0.00 39.49 5.68
769 1805 0.179059 TCTCGCACACAGGCAAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
774 1810 1.948721 ATCGATCTCGCACACAGGCA 61.949 55.000 0.00 0.00 39.60 4.75
909 2016 1.668151 GTTCGGTGTGGGTCTGAGC 60.668 63.158 0.00 0.00 0.00 4.26
914 4332 1.301479 GTGGAGTTCGGTGTGGGTC 60.301 63.158 0.00 0.00 0.00 4.46
1021 7151 0.992695 TCACGGAGGAGAGAGAGGAA 59.007 55.000 0.00 0.00 0.00 3.36
1023 7153 1.092921 CGTCACGGAGGAGAGAGAGG 61.093 65.000 0.00 0.00 0.00 3.69
1155 7291 0.319211 CGCAGGTGTTGACGAGGTAA 60.319 55.000 0.00 0.00 0.00 2.85
1569 7705 1.080093 TAGCTCGACGTTGGGCTTG 60.080 57.895 34.25 5.97 36.40 4.01
1614 7750 4.528674 CCAGTCTTGGCGAGATGG 57.471 61.111 7.90 12.25 37.73 3.51
1746 7882 2.430921 GTCACGCAGGAGACGGTG 60.431 66.667 0.00 0.00 42.06 4.94
1833 7969 1.132640 GTGCTTGACGACCGCAATC 59.867 57.895 0.00 0.00 35.16 2.67
2050 8186 1.750572 CTCTCGCTCGCAGCAATCAC 61.751 60.000 8.52 0.00 42.58 3.06
2053 8189 1.667154 TACCTCTCGCTCGCAGCAAT 61.667 55.000 8.52 0.00 42.58 3.56
2079 8215 6.872020 CCTTGTAAGAGTCGATAAACCTTGAA 59.128 38.462 0.00 0.00 0.00 2.69
2096 8232 4.815269 CTCAGGAACACTCTCCTTGTAAG 58.185 47.826 0.00 0.00 43.76 2.34
2202 8338 5.065218 GCTACGGCCATGAGGAAATATATTG 59.935 44.000 2.24 0.00 36.89 1.90
2206 8342 2.639839 AGCTACGGCCATGAGGAAATAT 59.360 45.455 2.24 0.00 39.73 1.28
2212 8348 1.344438 TGAATAGCTACGGCCATGAGG 59.656 52.381 2.24 0.00 39.73 3.86
2216 8359 3.617531 GCTATGTGAATAGCTACGGCCAT 60.618 47.826 2.24 0.00 44.49 4.40
2217 8360 2.288825 GCTATGTGAATAGCTACGGCCA 60.289 50.000 2.24 0.00 44.49 5.36
2218 8361 2.338500 GCTATGTGAATAGCTACGGCC 58.662 52.381 9.88 0.00 44.49 6.13
2259 8402 7.984422 TCAGTCAGAATGCTAAAATGAAGAA 57.016 32.000 0.00 0.00 34.76 2.52
2299 8444 0.179094 TCGCGGCGGTCAATAAGATT 60.179 50.000 23.46 0.00 0.00 2.40
2327 8472 7.656707 AACCATTTCATATGTTTCAGCAAAC 57.343 32.000 1.90 0.00 42.16 2.93
2358 8504 7.004086 ACTGTAAGAGATGGGAACAAAATCAA 58.996 34.615 0.00 0.00 40.88 2.57
2369 8515 6.039270 TCAACAACAAAACTGTAAGAGATGGG 59.961 38.462 0.00 0.00 37.43 4.00
2449 8598 3.216147 GCCAAACAGCGAATACAACAT 57.784 42.857 0.00 0.00 0.00 2.71
2466 8615 1.992233 GCCATCGATTTTCAGCGCCA 61.992 55.000 2.29 0.00 0.00 5.69
2516 8665 3.980134 CAGTCGCAATGCTATCTAGTGAG 59.020 47.826 2.94 0.00 0.00 3.51
2517 8666 3.381590 ACAGTCGCAATGCTATCTAGTGA 59.618 43.478 2.94 0.00 0.00 3.41
2518 8667 3.711086 ACAGTCGCAATGCTATCTAGTG 58.289 45.455 2.94 0.00 0.00 2.74
2519 8668 4.392921 AACAGTCGCAATGCTATCTAGT 57.607 40.909 2.94 0.00 0.00 2.57
2600 8754 4.754322 TCAAAGAAAAAGTCAAAGGCACC 58.246 39.130 0.00 0.00 0.00 5.01
2705 8896 0.842467 AGAGGACCCCAACCCAGAAG 60.842 60.000 0.00 0.00 0.00 2.85
2734 8926 0.398696 TTGGTGGTAATGCTGACGGT 59.601 50.000 0.00 0.00 0.00 4.83
2737 8929 2.514803 ACCTTTGGTGGTAATGCTGAC 58.485 47.619 0.00 0.00 38.79 3.51
2746 8938 7.102076 AGTTCAGAACTACACCTTTGGTGGT 62.102 44.000 14.58 7.15 45.27 4.16
2770 8962 4.541705 TCACAAAGTTTCCAATGGAGGAA 58.458 39.130 0.86 0.00 45.61 3.36
2866 9058 1.738350 CTCTTCTTGATGTGCAGCAGG 59.262 52.381 0.00 0.00 0.00 4.85
2884 9076 1.135141 AGACAACGATGCAGCTCTCTC 60.135 52.381 0.00 0.00 0.00 3.20
2937 9132 5.946972 CAGGAACTAAGTCCTCTAGACAGAA 59.053 44.000 0.00 0.00 45.40 3.02
2948 9143 5.564848 GCAAAAATCCACAGGAACTAAGTCC 60.565 44.000 0.00 0.00 36.02 3.85
2953 9148 3.751175 CGAGCAAAAATCCACAGGAACTA 59.249 43.478 0.00 0.00 36.02 2.24
3043 9290 2.311542 TGGCTGGAAGAAACATACCCAT 59.688 45.455 0.00 0.00 34.07 4.00
3066 9333 1.089920 CCTGTCATGGTTGCTACAGC 58.910 55.000 0.00 0.00 38.39 4.40
3085 9352 1.986378 GCTGACGCGTGTGGATATATC 59.014 52.381 20.70 3.96 0.00 1.63
3099 9366 2.956987 CTTGGGCTTTGGCTGACG 59.043 61.111 0.00 0.00 38.73 4.35
3121 9388 4.033358 CGTGTAATCAGCAATCAGAGGAAC 59.967 45.833 0.00 0.00 0.00 3.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.