Multiple sequence alignment - TraesCS7A01G182000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G182000 chr7A 100.000 2090 0 0 3291 5380 136349086 136346997 0.000000e+00 3860
1 TraesCS7A01G182000 chr7A 100.000 1905 0 0 947 2851 136351430 136349526 0.000000e+00 3518
2 TraesCS7A01G182000 chr7A 100.000 757 0 0 1 757 136352376 136351620 0.000000e+00 1399
3 TraesCS7A01G182000 chr7A 93.739 559 33 2 1381 1938 136393904 136393347 0.000000e+00 837
4 TraesCS7A01G182000 chr7A 86.944 360 24 11 947 1296 136402949 136402603 3.040000e-102 383
5 TraesCS7A01G182000 chr7A 92.308 156 6 1 608 757 136403136 136402981 3.260000e-52 217
6 TraesCS7A01G182000 chr7D 92.203 1911 118 19 947 2845 136592695 136590804 0.000000e+00 2675
7 TraesCS7A01G182000 chr7D 91.531 980 63 10 3338 4306 136590726 136589756 0.000000e+00 1332
8 TraesCS7A01G182000 chr7D 96.205 606 16 6 1 603 162132916 162133517 0.000000e+00 985
9 TraesCS7A01G182000 chr7D 95.574 610 19 6 1 606 488082152 488081547 0.000000e+00 970
10 TraesCS7A01G182000 chr7D 94.340 212 11 1 4257 4467 136589744 136589533 1.870000e-84 324
11 TraesCS7A01G182000 chr7B 91.811 1905 123 15 947 2845 100032313 100030436 0.000000e+00 2623
12 TraesCS7A01G182000 chr7B 86.898 1038 102 17 3800 4816 100029767 100028743 0.000000e+00 1133
13 TraesCS7A01G182000 chr7B 94.253 609 28 7 1 608 227835484 227836086 0.000000e+00 924
14 TraesCS7A01G182000 chr7B 87.699 439 50 3 3338 3774 100030358 100029922 4.810000e-140 508
15 TraesCS7A01G182000 chr7B 89.744 156 10 1 608 757 100032495 100032340 1.530000e-45 195
16 TraesCS7A01G182000 chr2D 96.405 612 15 5 1 609 166161795 166162402 0.000000e+00 1002
17 TraesCS7A01G182000 chr5D 96.217 608 19 2 1 608 540147741 540148344 0.000000e+00 992
18 TraesCS7A01G182000 chr6D 96.066 610 18 3 1 608 291637525 291638130 0.000000e+00 989
19 TraesCS7A01G182000 chr6D 84.483 232 36 0 1759 1990 389592150 389591919 4.190000e-56 230
20 TraesCS7A01G182000 chr6D 90.643 171 16 0 2294 2464 389591599 389591429 1.510000e-55 228
21 TraesCS7A01G182000 chr2A 94.868 604 26 4 1 603 737080184 737080783 0.000000e+00 939
22 TraesCS7A01G182000 chr4A 94.314 598 28 3 1 598 201168655 201168064 0.000000e+00 911
23 TraesCS7A01G182000 chr2B 93.475 613 33 5 1 613 157281695 157281090 0.000000e+00 904
24 TraesCS7A01G182000 chr6B 91.228 171 15 0 2294 2464 582866919 582866749 3.240000e-57 233
25 TraesCS7A01G182000 chr6B 83.190 232 39 0 1759 1990 582867593 582867362 4.220000e-51 213
26 TraesCS7A01G182000 chr6A 91.228 171 15 0 2294 2464 535984093 535983923 3.240000e-57 233
27 TraesCS7A01G182000 chr6A 84.977 213 32 0 1778 1990 535984627 535984415 3.260000e-52 217


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G182000 chr7A 136346997 136352376 5379 True 2925.666667 3860 100.000000 1 5380 3 chr7A.!!$R2 5379
1 TraesCS7A01G182000 chr7A 136393347 136393904 557 True 837.000000 837 93.739000 1381 1938 1 chr7A.!!$R1 557
2 TraesCS7A01G182000 chr7A 136402603 136403136 533 True 300.000000 383 89.626000 608 1296 2 chr7A.!!$R3 688
3 TraesCS7A01G182000 chr7D 136589533 136592695 3162 True 1443.666667 2675 92.691333 947 4467 3 chr7D.!!$R2 3520
4 TraesCS7A01G182000 chr7D 162132916 162133517 601 False 985.000000 985 96.205000 1 603 1 chr7D.!!$F1 602
5 TraesCS7A01G182000 chr7D 488081547 488082152 605 True 970.000000 970 95.574000 1 606 1 chr7D.!!$R1 605
6 TraesCS7A01G182000 chr7B 100028743 100032495 3752 True 1114.750000 2623 89.038000 608 4816 4 chr7B.!!$R1 4208
7 TraesCS7A01G182000 chr7B 227835484 227836086 602 False 924.000000 924 94.253000 1 608 1 chr7B.!!$F1 607
8 TraesCS7A01G182000 chr2D 166161795 166162402 607 False 1002.000000 1002 96.405000 1 609 1 chr2D.!!$F1 608
9 TraesCS7A01G182000 chr5D 540147741 540148344 603 False 992.000000 992 96.217000 1 608 1 chr5D.!!$F1 607
10 TraesCS7A01G182000 chr6D 291637525 291638130 605 False 989.000000 989 96.066000 1 608 1 chr6D.!!$F1 607
11 TraesCS7A01G182000 chr6D 389591429 389592150 721 True 229.000000 230 87.563000 1759 2464 2 chr6D.!!$R1 705
12 TraesCS7A01G182000 chr2A 737080184 737080783 599 False 939.000000 939 94.868000 1 603 1 chr2A.!!$F1 602
13 TraesCS7A01G182000 chr4A 201168064 201168655 591 True 911.000000 911 94.314000 1 598 1 chr4A.!!$R1 597
14 TraesCS7A01G182000 chr2B 157281090 157281695 605 True 904.000000 904 93.475000 1 613 1 chr2B.!!$R1 612
15 TraesCS7A01G182000 chr6B 582866749 582867593 844 True 223.000000 233 87.209000 1759 2464 2 chr6B.!!$R1 705
16 TraesCS7A01G182000 chr6A 535983923 535984627 704 True 225.000000 233 88.102500 1778 2464 2 chr6A.!!$R1 686

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
603 611 0.179113 CAACGCACAGGCCTTTTTGT 60.179 50.0 0.00 0.00 36.38 2.83 F
1174 1191 0.798776 CTTGAGGTGCGCTTACTTGG 59.201 55.0 9.73 0.00 0.00 3.61 F
1645 1669 0.108945 CGGTTCACCTACCCTCGAAC 60.109 60.0 0.00 0.00 37.59 3.95 F
1977 2006 0.748729 TTGCCATGATGCAGCATCGA 60.749 50.0 26.79 17.61 43.14 3.59 F
1986 2015 1.227342 TGCAGCATCGACGCAAGAAA 61.227 50.0 6.14 0.00 43.62 2.52 F
2560 2778 2.032549 CACACGCATCTAAAGCTATGCC 60.033 50.0 12.46 0.00 44.50 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1574 1598 2.100749 CACAAACCAGACCCAACTTTCC 59.899 50.000 0.00 0.0 0.00 3.13 R
2473 2691 2.358957 GCAGTGAGTATGCACCATTCA 58.641 47.619 0.00 0.0 43.31 2.57 R
3400 3618 1.413077 CTCCCCCGTCTGATAAACTCC 59.587 57.143 0.00 0.0 0.00 3.85 R
3424 3642 3.007398 CACTTGCTTCAGAAGGTCCTACT 59.993 47.826 12.30 0.0 0.00 2.57 R
3520 3740 5.342806 TGCTGTCGATCAGTTTGTTTTAG 57.657 39.130 13.91 0.0 45.23 1.85 R
4391 4819 1.064389 GGCTCAAAGGGAATGCTACCT 60.064 52.381 0.00 0.0 39.21 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 0.983378 GAGCTTTGGGAGGCCCTCTA 60.983 60.000 11.29 0.00 45.70 2.43
332 339 3.146847 CCGGCCTTAGGGTGATATTTTC 58.853 50.000 0.00 0.00 34.45 2.29
355 362 5.415389 TCAACCTTGTCATATGTTGGTCATG 59.585 40.000 1.90 4.26 38.81 3.07
406 413 3.753815 TGATTCCACATGAGCTTGTCAA 58.246 40.909 0.00 0.00 39.19 3.18
427 434 8.597167 TGTCAATTAATGCTAGCCTACATAGAT 58.403 33.333 13.29 0.00 0.00 1.98
456 463 2.014335 TGTTGTGGATCAGCTCATCG 57.986 50.000 0.00 0.00 0.00 3.84
467 474 4.462508 TCAGCTCATCGTCTTGAGATTT 57.537 40.909 14.13 0.54 44.88 2.17
551 559 1.004277 AGGATAAGGTGCGAAAAGGCA 59.996 47.619 0.00 0.00 41.45 4.75
603 611 0.179113 CAACGCACAGGCCTTTTTGT 60.179 50.000 0.00 0.00 36.38 2.83
696 704 2.250939 TCGTTGCCAGTTTGCTCCG 61.251 57.895 0.00 0.00 0.00 4.63
1096 1113 2.266055 GCTCCCCTCGACTTGGTG 59.734 66.667 0.00 0.00 0.00 4.17
1121 1138 2.047002 GAGCTCCTCGGTTCTAGACT 57.953 55.000 0.87 0.00 0.00 3.24
1122 1139 2.371306 GAGCTCCTCGGTTCTAGACTT 58.629 52.381 0.87 0.00 0.00 3.01
1123 1140 2.356695 GAGCTCCTCGGTTCTAGACTTC 59.643 54.545 0.87 0.00 0.00 3.01
1124 1141 1.406180 GCTCCTCGGTTCTAGACTTCC 59.594 57.143 0.00 0.00 0.00 3.46
1125 1142 2.724454 CTCCTCGGTTCTAGACTTCCA 58.276 52.381 0.00 0.00 0.00 3.53
1126 1143 2.685897 CTCCTCGGTTCTAGACTTCCAG 59.314 54.545 0.00 0.00 0.00 3.86
1174 1191 0.798776 CTTGAGGTGCGCTTACTTGG 59.201 55.000 9.73 0.00 0.00 3.61
1176 1193 1.295423 GAGGTGCGCTTACTTGGGA 59.705 57.895 9.73 0.00 0.00 4.37
1207 1231 4.511826 TCCTTCTTTCTGAAAGCGTTCTTC 59.488 41.667 22.25 0.00 38.39 2.87
1213 1237 3.245797 TCTGAAAGCGTTCTTCATCTCG 58.754 45.455 13.57 0.00 34.60 4.04
1243 1267 2.616842 GGCGGTCTGTTCTTTCTGAAAA 59.383 45.455 4.18 0.00 36.30 2.29
1277 1301 2.110578 GCAGGGGGTTCATTGCTATTT 58.889 47.619 0.00 0.00 33.88 1.40
1359 1383 7.588143 TGCTCGTTCAAAAAGAAAAATCAAA 57.412 28.000 0.00 0.00 38.13 2.69
1373 1397 6.705381 AGAAAAATCAAAAATCGCACAATCCA 59.295 30.769 0.00 0.00 0.00 3.41
1379 1403 1.538047 AATCGCACAATCCAAGCTGT 58.462 45.000 0.00 0.00 0.00 4.40
1391 1415 6.319658 ACAATCCAAGCTGTGAATTAGGTATG 59.680 38.462 0.00 0.00 0.00 2.39
1396 1420 4.446371 AGCTGTGAATTAGGTATGCAGAC 58.554 43.478 1.94 1.94 0.00 3.51
1606 1630 1.971167 GGTTTGTGCATCGGGCTCA 60.971 57.895 0.00 1.70 43.72 4.26
1645 1669 0.108945 CGGTTCACCTACCCTCGAAC 60.109 60.000 0.00 0.00 37.59 3.95
1656 1680 2.742372 CTCGAACGGCAAGGGTGG 60.742 66.667 0.00 0.00 0.00 4.61
1745 1773 2.161855 TGCAGTCCCATAAAGCTGTTG 58.838 47.619 0.00 0.00 0.00 3.33
1914 1943 3.490800 TGCAACATTCCAATCGATGTG 57.509 42.857 0.00 0.00 0.00 3.21
1977 2006 0.748729 TTGCCATGATGCAGCATCGA 60.749 50.000 26.79 17.61 43.14 3.59
1986 2015 1.227342 TGCAGCATCGACGCAAGAAA 61.227 50.000 6.14 0.00 43.62 2.52
1994 2024 3.750639 TCGACGCAAGAAAGTTGTTTT 57.249 38.095 0.00 0.00 43.62 2.43
2183 2264 3.253188 TCATAACAGCTTGGCAACTGAAC 59.747 43.478 25.85 4.65 37.35 3.18
2218 2319 5.725362 AGAGTTTGTCTCCTGTTACTATGC 58.275 41.667 0.00 0.00 43.71 3.14
2250 2466 4.261322 GCCAATCAGGTAATGTGCATAGTG 60.261 45.833 0.00 0.00 40.61 2.74
2465 2683 6.749139 TCAAAGATCAGGTAAGGATATGTCG 58.251 40.000 0.00 0.00 0.00 4.35
2473 2691 6.776116 TCAGGTAAGGATATGTCGACACTAAT 59.224 38.462 22.71 14.68 0.00 1.73
2478 2696 7.953158 AAGGATATGTCGACACTAATGAATG 57.047 36.000 22.71 0.00 0.00 2.67
2486 2704 4.808895 TCGACACTAATGAATGGTGCATAC 59.191 41.667 0.00 0.00 34.70 2.39
2493 2711 2.358957 TGAATGGTGCATACTCACTGC 58.641 47.619 0.00 0.00 40.10 4.40
2498 2716 3.304829 TGGTGCATACTCACTGCCTATA 58.695 45.455 0.00 0.00 38.89 1.31
2499 2717 3.903714 TGGTGCATACTCACTGCCTATAT 59.096 43.478 0.00 0.00 38.89 0.86
2511 2729 7.618907 ACTCACTGCCTATATGATGATATGAGT 59.381 37.037 0.00 0.00 0.00 3.41
2514 2732 9.129532 CACTGCCTATATGATGATATGAGTCTA 57.870 37.037 0.00 0.00 0.00 2.59
2515 2733 9.880254 ACTGCCTATATGATGATATGAGTCTAT 57.120 33.333 0.00 0.00 0.00 1.98
2549 2767 6.500684 AAATAACTTGAATCACACGCATCT 57.499 33.333 0.00 0.00 0.00 2.90
2553 2771 5.536554 ACTTGAATCACACGCATCTAAAG 57.463 39.130 0.00 0.00 0.00 1.85
2560 2778 2.032549 CACACGCATCTAAAGCTATGCC 60.033 50.000 12.46 0.00 44.50 4.40
2561 2779 2.212652 CACGCATCTAAAGCTATGCCA 58.787 47.619 12.46 0.00 44.50 4.92
2566 2784 4.553547 CGCATCTAAAGCTATGCCAAAGAC 60.554 45.833 12.46 0.00 44.50 3.01
2569 2787 6.429385 GCATCTAAAGCTATGCCAAAGACTAT 59.571 38.462 7.80 0.00 42.13 2.12
2580 2798 9.224267 CTATGCCAAAGACTATAATGCAATACT 57.776 33.333 0.00 0.00 0.00 2.12
2582 2800 9.745018 ATGCCAAAGACTATAATGCAATACTAT 57.255 29.630 0.00 0.00 0.00 2.12
2618 2836 2.875296 TGTTAGAATTGCCCAAGCTGT 58.125 42.857 0.00 0.00 40.80 4.40
2722 2940 7.074653 ACCTAATCTTTGAAGTGGTTGTCTA 57.925 36.000 0.00 0.00 0.00 2.59
2795 3013 6.309494 CACATGCAAATTCACTTCGATCAATT 59.691 34.615 0.00 0.00 0.00 2.32
2807 3025 8.715088 TCACTTCGATCAATTATAATGCATCTG 58.285 33.333 0.00 0.00 0.00 2.90
2819 3037 6.778834 ATAATGCATCTGGACAAATTGACA 57.221 33.333 0.00 0.00 0.00 3.58
2822 3040 4.338012 TGCATCTGGACAAATTGACATCT 58.662 39.130 0.00 0.00 0.00 2.90
2845 3063 6.547880 TCTCAGGAGGTGATCTATTCTTGTAC 59.452 42.308 0.00 0.00 33.51 2.90
2847 3065 6.841229 TCAGGAGGTGATCTATTCTTGTACAT 59.159 38.462 0.00 0.00 0.00 2.29
2849 3067 8.642432 CAGGAGGTGATCTATTCTTGTACATAA 58.358 37.037 0.00 0.00 0.00 1.90
3312 3530 4.472691 TCTTCTTGCATCGTGTTGAAAG 57.527 40.909 0.00 0.00 34.08 2.62
3315 3533 2.942376 TCTTGCATCGTGTTGAAAGTGT 59.058 40.909 0.00 0.00 34.38 3.55
3322 3540 3.186909 TCGTGTTGAAAGTGTGACTGAG 58.813 45.455 0.00 0.00 0.00 3.35
3324 3542 3.243877 CGTGTTGAAAGTGTGACTGAGAG 59.756 47.826 0.00 0.00 0.00 3.20
3327 3545 4.160439 TGTTGAAAGTGTGACTGAGAGTCT 59.840 41.667 0.00 0.00 45.27 3.24
3328 3546 4.576216 TGAAAGTGTGACTGAGAGTCTC 57.424 45.455 13.56 13.56 45.27 3.36
3329 3547 4.211125 TGAAAGTGTGACTGAGAGTCTCT 58.789 43.478 20.64 0.70 45.27 3.10
3330 3548 4.646945 TGAAAGTGTGACTGAGAGTCTCTT 59.353 41.667 20.64 8.04 45.27 2.85
3331 3549 5.828328 TGAAAGTGTGACTGAGAGTCTCTTA 59.172 40.000 20.64 0.00 45.27 2.10
3332 3550 6.491745 TGAAAGTGTGACTGAGAGTCTCTTAT 59.508 38.462 20.64 6.41 45.27 1.73
3333 3551 5.895636 AGTGTGACTGAGAGTCTCTTATG 57.104 43.478 20.64 10.63 45.27 1.90
3336 3554 5.861251 GTGTGACTGAGAGTCTCTTATGTTG 59.139 44.000 20.64 5.41 45.27 3.33
3340 3558 6.150307 TGACTGAGAGTCTCTTATGTTGTCTC 59.850 42.308 20.64 0.00 45.27 3.36
3364 3582 2.673368 GGTAATCAGCCTTGAGTTGTCG 59.327 50.000 0.00 0.00 36.61 4.35
3400 3618 8.043710 CCTATGCTCTACATATTTAAGGAAGGG 58.956 40.741 0.00 0.00 40.48 3.95
3481 3700 2.835389 AGGGTAAGGGTCTTCTCCTTC 58.165 52.381 0.00 0.00 43.02 3.46
3488 3707 2.192263 GGGTCTTCTCCTTCCACATCT 58.808 52.381 0.00 0.00 0.00 2.90
3496 3715 4.991776 TCTCCTTCCACATCTCTCGATAT 58.008 43.478 0.00 0.00 0.00 1.63
3497 3716 5.389520 TCTCCTTCCACATCTCTCGATATT 58.610 41.667 0.00 0.00 0.00 1.28
3498 3717 5.835819 TCTCCTTCCACATCTCTCGATATTT 59.164 40.000 0.00 0.00 0.00 1.40
3499 3718 6.325028 TCTCCTTCCACATCTCTCGATATTTT 59.675 38.462 0.00 0.00 0.00 1.82
3500 3719 6.889198 TCCTTCCACATCTCTCGATATTTTT 58.111 36.000 0.00 0.00 0.00 1.94
3557 3777 7.607607 TGATCGACAGCAATAAAGGCATATAAT 59.392 33.333 0.00 0.00 0.00 1.28
3588 3808 5.224821 TGGCTGGATCTGAATAATCTCAG 57.775 43.478 0.00 0.00 43.62 3.35
3676 3896 3.251487 CAGTGTCAGCATTGTGATTGACA 59.749 43.478 11.24 11.24 45.37 3.58
3678 3898 3.742385 TGTCAGCATTGTGATTGACAGA 58.258 40.909 11.24 0.00 43.43 3.41
3837 4189 5.177696 CACTCTTGCTTACACTGTTAACCTC 59.822 44.000 2.48 0.00 0.00 3.85
3954 4307 7.119709 ACCACTGTTTAATGTTTAAGGCTTT 57.880 32.000 4.45 0.00 0.00 3.51
4049 4404 0.800631 TGGCTACGTACAGAGACACG 59.199 55.000 0.00 0.00 43.63 4.49
4075 4430 7.012421 GCTTGATAGTATGGTTCAGTAAAAGGG 59.988 40.741 0.00 0.00 0.00 3.95
4083 4438 3.190744 GGTTCAGTAAAAGGGCAGTAAGC 59.809 47.826 0.00 0.00 44.65 3.09
4111 4466 4.525487 AGAATGTGATGTTTGACTGCCAAT 59.475 37.500 0.00 0.00 34.23 3.16
4133 4488 7.830697 CCAATGAGTATTCCAATATGGCTATCA 59.169 37.037 0.00 0.00 37.47 2.15
4176 4531 7.180051 TCAATTGGTGTATTTTCAGGCCTTATT 59.820 33.333 0.00 0.00 0.00 1.40
4185 4541 3.924114 TCAGGCCTTATTGATTTCCGA 57.076 42.857 0.00 0.00 0.00 4.55
4227 4583 6.125029 ACATGCCATTATTTAGCTGAGAACT 58.875 36.000 0.00 0.00 0.00 3.01
4231 4587 5.008118 GCCATTATTTAGCTGAGAACTGGTC 59.992 44.000 0.00 0.00 0.00 4.02
4282 4708 3.322191 ACTAGGAGCTAGAAGGGGAAG 57.678 52.381 0.00 0.00 37.49 3.46
4283 4709 1.967779 CTAGGAGCTAGAAGGGGAAGC 59.032 57.143 0.00 0.00 36.26 3.86
4293 4720 3.454858 AGAAGGGGAAGCTCACAATCTA 58.545 45.455 0.00 0.00 0.00 1.98
4329 4756 9.990360 TTCTGTAACACTGAAATCTATGTAACA 57.010 29.630 0.00 0.00 33.95 2.41
4344 4771 4.150897 TGTAACAGATCTACAATGGGGC 57.849 45.455 0.00 0.00 0.00 5.80
4482 4917 3.733344 GAATACGGGCTGCTGCGGA 62.733 63.158 13.72 0.00 40.82 5.54
4504 4939 1.839894 CACCCCCTATCCCAAGCTC 59.160 63.158 0.00 0.00 0.00 4.09
4513 4948 4.717629 CCCAAGCTCGCGTCGACA 62.718 66.667 17.16 0.00 0.00 4.35
4522 4957 1.803922 CGCGTCGACACCATTGCTA 60.804 57.895 17.16 0.00 0.00 3.49
4524 4959 1.847818 GCGTCGACACCATTGCTATA 58.152 50.000 17.16 0.00 0.00 1.31
4530 4965 2.772287 GACACCATTGCTATAGCTCCC 58.228 52.381 24.61 0.00 42.66 4.30
4531 4966 1.421646 ACACCATTGCTATAGCTCCCC 59.578 52.381 24.61 0.00 42.66 4.81
4532 4967 1.068121 ACCATTGCTATAGCTCCCCC 58.932 55.000 24.61 0.00 42.66 5.40
4533 4968 1.067295 CCATTGCTATAGCTCCCCCA 58.933 55.000 24.61 0.98 42.66 4.96
4534 4969 1.637553 CCATTGCTATAGCTCCCCCAT 59.362 52.381 24.61 5.50 42.66 4.00
4535 4970 2.356535 CCATTGCTATAGCTCCCCCATC 60.357 54.545 24.61 0.00 42.66 3.51
4536 4971 1.362224 TTGCTATAGCTCCCCCATCC 58.638 55.000 24.61 0.00 42.66 3.51
4546 4981 2.122144 CCCCATCCCCCATCCGTA 60.122 66.667 0.00 0.00 0.00 4.02
4561 4996 2.202623 GTAGCACCCGAGACGCTG 60.203 66.667 0.00 0.00 37.20 5.18
4578 5013 4.803426 GTCAGAGGAGGCGCCGTG 62.803 72.222 23.20 14.58 43.43 4.94
4622 5067 3.455469 GCCTGGGTCATGCCTTGC 61.455 66.667 0.00 3.75 37.43 4.01
4625 5070 4.349503 TGGGTCATGCCTTGCGCT 62.350 61.111 9.73 0.00 38.78 5.92
4626 5071 3.512516 GGGTCATGCCTTGCGCTC 61.513 66.667 9.73 0.00 38.78 5.03
4627 5072 2.437359 GGTCATGCCTTGCGCTCT 60.437 61.111 9.73 0.00 38.78 4.09
4663 5108 2.421314 CTGCACGACCCAGACACA 59.579 61.111 0.00 0.00 32.03 3.72
4681 5126 1.623811 ACACGCCATGTCTAAGACCTT 59.376 47.619 0.00 0.00 36.54 3.50
4683 5128 1.623811 ACGCCATGTCTAAGACCTTGT 59.376 47.619 0.00 0.00 0.00 3.16
4684 5129 2.271800 CGCCATGTCTAAGACCTTGTC 58.728 52.381 0.00 0.00 0.00 3.18
4697 5142 1.671054 CTTGTCGGGGAACGTGCAT 60.671 57.895 0.00 0.00 44.69 3.96
4699 5144 3.124921 GTCGGGGAACGTGCATGG 61.125 66.667 11.36 0.00 44.69 3.66
4717 5162 0.686224 GGAGCATCTCTAGCTGCCAT 59.314 55.000 0.00 0.00 43.61 4.40
4719 5164 0.250381 AGCATCTCTAGCTGCCATGC 60.250 55.000 11.71 11.71 41.61 4.06
4754 5199 2.352032 GGGCCGCAGACTACACTCT 61.352 63.158 0.00 0.00 0.00 3.24
4756 5201 0.737715 GGCCGCAGACTACACTCTTG 60.738 60.000 0.00 0.00 0.00 3.02
4764 5209 0.473886 ACTACACTCTTGGCACCCCT 60.474 55.000 0.00 0.00 0.00 4.79
4766 5211 0.766674 TACACTCTTGGCACCCCTGT 60.767 55.000 0.00 0.00 0.00 4.00
4781 5228 0.327924 CCTGTATGGGTGGTGCTTGA 59.672 55.000 0.00 0.00 0.00 3.02
4786 5233 4.667573 TGTATGGGTGGTGCTTGATTTTA 58.332 39.130 0.00 0.00 0.00 1.52
4790 5237 6.655078 ATGGGTGGTGCTTGATTTTATATC 57.345 37.500 0.00 0.00 0.00 1.63
4792 5239 4.023193 GGGTGGTGCTTGATTTTATATCGG 60.023 45.833 0.00 0.00 0.00 4.18
4811 5258 3.746900 GCATTGCCAATGGGAAGTC 57.253 52.632 18.52 2.35 36.27 3.01
4816 5263 2.409870 GCCAATGGGAAGTCGGCTG 61.410 63.158 0.00 0.00 39.73 4.85
4817 5264 1.750399 CCAATGGGAAGTCGGCTGG 60.750 63.158 0.00 0.00 35.59 4.85
4818 5265 1.002134 CAATGGGAAGTCGGCTGGT 60.002 57.895 0.00 0.00 0.00 4.00
4819 5266 1.002134 AATGGGAAGTCGGCTGGTG 60.002 57.895 0.00 0.00 0.00 4.17
4820 5267 2.484287 AATGGGAAGTCGGCTGGTGG 62.484 60.000 0.00 0.00 0.00 4.61
4821 5268 4.410400 GGGAAGTCGGCTGGTGGG 62.410 72.222 0.00 0.00 0.00 4.61
4822 5269 3.319198 GGAAGTCGGCTGGTGGGA 61.319 66.667 0.00 0.00 0.00 4.37
4823 5270 2.266055 GAAGTCGGCTGGTGGGAG 59.734 66.667 0.00 0.00 0.00 4.30
4824 5271 2.526873 AAGTCGGCTGGTGGGAGT 60.527 61.111 0.00 0.00 0.00 3.85
4825 5272 2.788191 GAAGTCGGCTGGTGGGAGTG 62.788 65.000 0.00 0.00 0.00 3.51
4826 5273 4.394712 GTCGGCTGGTGGGAGTGG 62.395 72.222 0.00 0.00 0.00 4.00
4836 5283 3.857038 GGGAGTGGCGGCCGATAA 61.857 66.667 33.48 10.54 0.00 1.75
4837 5284 2.280186 GGAGTGGCGGCCGATAAG 60.280 66.667 33.48 0.00 0.00 1.73
4838 5285 2.792947 GGAGTGGCGGCCGATAAGA 61.793 63.158 33.48 3.19 0.00 2.10
4839 5286 1.591863 GAGTGGCGGCCGATAAGAC 60.592 63.158 33.48 16.38 0.00 3.01
4840 5287 2.588034 GTGGCGGCCGATAAGACC 60.588 66.667 33.48 20.27 0.00 3.85
4841 5288 2.762459 TGGCGGCCGATAAGACCT 60.762 61.111 33.48 0.00 0.00 3.85
4842 5289 1.456145 TGGCGGCCGATAAGACCTA 60.456 57.895 33.48 3.47 0.00 3.08
4843 5290 1.289380 GGCGGCCGATAAGACCTAG 59.711 63.158 33.48 0.00 0.00 3.02
4844 5291 1.373121 GCGGCCGATAAGACCTAGC 60.373 63.158 33.48 1.25 0.00 3.42
4845 5292 1.289380 CGGCCGATAAGACCTAGCC 59.711 63.158 24.07 0.00 37.03 3.93
4846 5293 1.461091 CGGCCGATAAGACCTAGCCA 61.461 60.000 24.07 0.00 40.49 4.75
4847 5294 0.756903 GGCCGATAAGACCTAGCCAA 59.243 55.000 0.00 0.00 40.20 4.52
4848 5295 1.140252 GGCCGATAAGACCTAGCCAAA 59.860 52.381 0.00 0.00 40.20 3.28
4849 5296 2.224548 GGCCGATAAGACCTAGCCAAAT 60.225 50.000 0.00 0.00 40.20 2.32
4850 5297 2.808543 GCCGATAAGACCTAGCCAAATG 59.191 50.000 0.00 0.00 0.00 2.32
4851 5298 3.403038 CCGATAAGACCTAGCCAAATGG 58.597 50.000 0.00 0.00 38.53 3.16
4852 5299 3.403038 CGATAAGACCTAGCCAAATGGG 58.597 50.000 0.90 0.00 40.85 4.00
4855 5302 3.080647 GACCTAGCCAAATGGGTCG 57.919 57.895 7.54 1.60 46.04 4.79
4856 5303 4.559502 CCTAGCCAAATGGGTCGG 57.440 61.111 7.54 7.62 46.04 4.79
4857 5304 1.152963 CCTAGCCAAATGGGTCGGG 60.153 63.158 12.98 10.59 46.04 5.14
4858 5305 1.632018 CCTAGCCAAATGGGTCGGGA 61.632 60.000 12.98 0.00 46.04 5.14
4859 5306 0.463833 CTAGCCAAATGGGTCGGGAC 60.464 60.000 7.54 0.00 46.04 4.46
4860 5307 0.912487 TAGCCAAATGGGTCGGGACT 60.912 55.000 7.54 0.00 46.04 3.85
4861 5308 2.046285 GCCAAATGGGTCGGGACTG 61.046 63.158 0.90 0.00 39.65 3.51
4862 5309 2.046285 CCAAATGGGTCGGGACTGC 61.046 63.158 0.00 0.00 0.00 4.40
4863 5310 2.046285 CAAATGGGTCGGGACTGCC 61.046 63.158 0.00 0.00 0.00 4.85
4864 5311 2.231380 AAATGGGTCGGGACTGCCT 61.231 57.895 0.00 0.00 0.00 4.75
4865 5312 2.484287 AAATGGGTCGGGACTGCCTG 62.484 60.000 0.00 0.00 42.30 4.85
4873 5320 4.083862 GGACTGCCTGACCCCGTC 62.084 72.222 0.00 0.00 0.00 4.79
4874 5321 4.083862 GACTGCCTGACCCCGTCC 62.084 72.222 0.00 0.00 0.00 4.79
4886 5333 2.764967 CCGTCCCGACCCCCATTA 60.765 66.667 0.00 0.00 0.00 1.90
4887 5334 2.368821 CCGTCCCGACCCCCATTAA 61.369 63.158 0.00 0.00 0.00 1.40
4888 5335 1.603306 CGTCCCGACCCCCATTAAA 59.397 57.895 0.00 0.00 0.00 1.52
4889 5336 0.035247 CGTCCCGACCCCCATTAAAA 60.035 55.000 0.00 0.00 0.00 1.52
4890 5337 1.466856 GTCCCGACCCCCATTAAAAC 58.533 55.000 0.00 0.00 0.00 2.43
4891 5338 1.073931 TCCCGACCCCCATTAAAACA 58.926 50.000 0.00 0.00 0.00 2.83
4892 5339 1.641714 TCCCGACCCCCATTAAAACAT 59.358 47.619 0.00 0.00 0.00 2.71
4893 5340 1.754226 CCCGACCCCCATTAAAACATG 59.246 52.381 0.00 0.00 0.00 3.21
4894 5341 1.136110 CCGACCCCCATTAAAACATGC 59.864 52.381 0.00 0.00 0.00 4.06
4895 5342 1.136110 CGACCCCCATTAAAACATGCC 59.864 52.381 0.00 0.00 0.00 4.40
4896 5343 2.466846 GACCCCCATTAAAACATGCCT 58.533 47.619 0.00 0.00 0.00 4.75
4897 5344 2.168313 GACCCCCATTAAAACATGCCTG 59.832 50.000 0.00 0.00 0.00 4.85
4898 5345 1.485895 CCCCCATTAAAACATGCCTGG 59.514 52.381 0.00 0.00 0.00 4.45
4899 5346 1.134431 CCCCATTAAAACATGCCTGGC 60.134 52.381 12.87 12.87 0.00 4.85
4900 5347 1.554160 CCCATTAAAACATGCCTGGCA 59.446 47.619 25.65 25.65 44.86 4.92
4901 5348 2.620242 CCATTAAAACATGCCTGGCAC 58.380 47.619 25.99 0.00 43.04 5.01
4902 5349 2.261345 CATTAAAACATGCCTGGCACG 58.739 47.619 25.99 19.91 43.04 5.34
4903 5350 1.610363 TTAAAACATGCCTGGCACGA 58.390 45.000 25.99 0.37 43.04 4.35
4904 5351 0.878416 TAAAACATGCCTGGCACGAC 59.122 50.000 25.99 0.00 43.04 4.34
4905 5352 1.106351 AAAACATGCCTGGCACGACA 61.106 50.000 25.99 0.00 43.04 4.35
4906 5353 1.795170 AAACATGCCTGGCACGACAC 61.795 55.000 25.99 0.00 43.04 3.67
4907 5354 2.669229 CATGCCTGGCACGACACA 60.669 61.111 25.99 0.00 43.04 3.72
4908 5355 2.359107 ATGCCTGGCACGACACAG 60.359 61.111 25.99 0.00 43.04 3.66
4914 5361 3.434319 GGCACGACACAGCCCATG 61.434 66.667 0.00 0.00 45.18 3.66
4915 5362 3.434319 GCACGACACAGCCCATGG 61.434 66.667 4.14 4.14 0.00 3.66
4925 5372 4.559502 GCCCATGGCGACTTGTAT 57.440 55.556 6.09 0.00 39.62 2.29
4926 5373 3.698250 GCCCATGGCGACTTGTATA 57.302 52.632 6.09 0.00 39.62 1.47
4927 5374 2.185004 GCCCATGGCGACTTGTATAT 57.815 50.000 6.09 0.00 39.62 0.86
4928 5375 3.328382 GCCCATGGCGACTTGTATATA 57.672 47.619 6.09 0.00 39.62 0.86
4929 5376 3.670625 GCCCATGGCGACTTGTATATAA 58.329 45.455 6.09 0.00 39.62 0.98
4930 5377 4.069304 GCCCATGGCGACTTGTATATAAA 58.931 43.478 6.09 0.00 39.62 1.40
4931 5378 4.700213 GCCCATGGCGACTTGTATATAAAT 59.300 41.667 6.09 0.00 39.62 1.40
4932 5379 5.391950 GCCCATGGCGACTTGTATATAAATG 60.392 44.000 6.09 0.00 39.62 2.32
4933 5380 5.705441 CCCATGGCGACTTGTATATAAATGT 59.295 40.000 6.09 0.00 33.84 2.71
4934 5381 6.348458 CCCATGGCGACTTGTATATAAATGTG 60.348 42.308 6.09 0.00 33.84 3.21
4935 5382 6.204688 CCATGGCGACTTGTATATAAATGTGT 59.795 38.462 0.00 0.00 33.84 3.72
4936 5383 6.838198 TGGCGACTTGTATATAAATGTGTC 57.162 37.500 0.00 0.00 0.00 3.67
4937 5384 6.578944 TGGCGACTTGTATATAAATGTGTCT 58.421 36.000 0.00 0.00 0.00 3.41
4938 5385 7.045416 TGGCGACTTGTATATAAATGTGTCTT 58.955 34.615 0.00 0.00 0.00 3.01
4939 5386 7.011016 TGGCGACTTGTATATAAATGTGTCTTG 59.989 37.037 0.00 0.00 0.00 3.02
4940 5387 6.846283 GCGACTTGTATATAAATGTGTCTTGC 59.154 38.462 0.00 0.00 0.00 4.01
4941 5388 7.345192 CGACTTGTATATAAATGTGTCTTGCC 58.655 38.462 0.00 0.00 0.00 4.52
4942 5389 7.246674 ACTTGTATATAAATGTGTCTTGCCG 57.753 36.000 0.00 0.00 0.00 5.69
4943 5390 6.821665 ACTTGTATATAAATGTGTCTTGCCGT 59.178 34.615 0.00 0.00 0.00 5.68
4944 5391 6.597262 TGTATATAAATGTGTCTTGCCGTG 57.403 37.500 0.00 0.00 0.00 4.94
4945 5392 6.110033 TGTATATAAATGTGTCTTGCCGTGT 58.890 36.000 0.00 0.00 0.00 4.49
4946 5393 5.734855 ATATAAATGTGTCTTGCCGTGTC 57.265 39.130 0.00 0.00 0.00 3.67
4947 5394 0.586319 AAATGTGTCTTGCCGTGTCG 59.414 50.000 0.00 0.00 0.00 4.35
4948 5395 0.249699 AATGTGTCTTGCCGTGTCGA 60.250 50.000 0.00 0.00 0.00 4.20
4949 5396 0.944311 ATGTGTCTTGCCGTGTCGAC 60.944 55.000 9.11 9.11 0.00 4.20
4950 5397 1.299926 GTGTCTTGCCGTGTCGACT 60.300 57.895 17.92 0.00 0.00 4.18
4951 5398 1.007734 TGTCTTGCCGTGTCGACTC 60.008 57.895 17.92 12.56 0.00 3.36
4952 5399 2.081212 GTCTTGCCGTGTCGACTCG 61.081 63.158 27.96 27.96 0.00 4.18
4953 5400 3.470567 CTTGCCGTGTCGACTCGC 61.471 66.667 29.12 23.98 0.00 5.03
4954 5401 3.898627 CTTGCCGTGTCGACTCGCT 62.899 63.158 29.12 0.00 0.00 4.93
4955 5402 4.700365 TGCCGTGTCGACTCGCTG 62.700 66.667 29.12 19.51 0.00 5.18
4964 5411 3.044305 GACTCGCTGCCGCACTTT 61.044 61.111 0.00 0.00 35.30 2.66
4965 5412 3.016474 GACTCGCTGCCGCACTTTC 62.016 63.158 0.00 0.00 35.30 2.62
4966 5413 3.043713 CTCGCTGCCGCACTTTCA 61.044 61.111 0.00 0.00 35.30 2.69
4967 5414 2.358615 TCGCTGCCGCACTTTCAT 60.359 55.556 0.00 0.00 35.30 2.57
4968 5415 2.202388 CGCTGCCGCACTTTCATG 60.202 61.111 0.00 0.00 35.30 3.07
4969 5416 2.505557 GCTGCCGCACTTTCATGC 60.506 61.111 0.00 0.00 42.48 4.06
4970 5417 2.180017 CTGCCGCACTTTCATGCC 59.820 61.111 0.00 0.00 42.99 4.40
4971 5418 3.346631 CTGCCGCACTTTCATGCCC 62.347 63.158 0.00 0.00 42.99 5.36
4972 5419 3.372730 GCCGCACTTTCATGCCCA 61.373 61.111 0.00 0.00 42.99 5.36
4973 5420 2.879907 CCGCACTTTCATGCCCAG 59.120 61.111 0.00 0.00 42.99 4.45
4974 5421 2.703798 CCGCACTTTCATGCCCAGG 61.704 63.158 0.00 0.00 42.99 4.45
4975 5422 2.575461 GCACTTTCATGCCCAGGC 59.425 61.111 0.38 0.38 39.86 4.85
4986 5433 4.728102 CCCAGGCACGACGCGTTA 62.728 66.667 15.53 0.00 43.84 3.18
4987 5434 3.179265 CCAGGCACGACGCGTTAG 61.179 66.667 15.53 13.98 43.84 2.34
4988 5435 2.430244 CAGGCACGACGCGTTAGT 60.430 61.111 15.53 14.72 43.84 2.24
4989 5436 2.019951 CAGGCACGACGCGTTAGTT 61.020 57.895 15.53 0.00 43.84 2.24
4990 5437 0.730155 CAGGCACGACGCGTTAGTTA 60.730 55.000 15.53 0.00 43.84 2.24
4991 5438 0.039256 AGGCACGACGCGTTAGTTAA 60.039 50.000 15.53 0.00 43.84 2.01
4992 5439 0.783579 GGCACGACGCGTTAGTTAAA 59.216 50.000 15.53 0.00 43.84 1.52
4993 5440 1.391144 GGCACGACGCGTTAGTTAAAT 59.609 47.619 15.53 0.00 43.84 1.40
4994 5441 2.414985 GCACGACGCGTTAGTTAAATG 58.585 47.619 15.53 6.06 38.32 2.32
4995 5442 2.159934 GCACGACGCGTTAGTTAAATGT 60.160 45.455 15.53 0.00 38.32 2.71
4996 5443 3.392141 CACGACGCGTTAGTTAAATGTG 58.608 45.455 15.53 7.57 38.32 3.21
4999 5446 3.693300 ACGCGTTAGTTAAATGTGTCG 57.307 42.857 5.58 0.00 42.81 4.35
5000 5447 2.409378 ACGCGTTAGTTAAATGTGTCGG 59.591 45.455 5.58 0.00 42.81 4.79
5001 5448 2.765918 GCGTTAGTTAAATGTGTCGGC 58.234 47.619 0.00 0.00 0.00 5.54
5002 5449 2.414138 GCGTTAGTTAAATGTGTCGGCT 59.586 45.455 0.00 0.00 0.00 5.52
5003 5450 3.483085 GCGTTAGTTAAATGTGTCGGCTC 60.483 47.826 0.00 0.00 0.00 4.70
5004 5451 3.241552 CGTTAGTTAAATGTGTCGGCTCG 60.242 47.826 0.00 0.00 0.00 5.03
5005 5452 2.450609 AGTTAAATGTGTCGGCTCGT 57.549 45.000 0.00 0.00 0.00 4.18
5006 5453 2.066262 AGTTAAATGTGTCGGCTCGTG 58.934 47.619 0.00 0.00 0.00 4.35
5007 5454 2.063266 GTTAAATGTGTCGGCTCGTGA 58.937 47.619 0.00 0.00 0.00 4.35
5008 5455 1.705256 TAAATGTGTCGGCTCGTGAC 58.295 50.000 0.00 0.00 36.88 3.67
5009 5456 0.033504 AAATGTGTCGGCTCGTGACT 59.966 50.000 0.00 0.00 37.26 3.41
5010 5457 0.388649 AATGTGTCGGCTCGTGACTC 60.389 55.000 0.00 0.00 37.26 3.36
5011 5458 2.502080 GTGTCGGCTCGTGACTCG 60.502 66.667 0.00 0.00 37.26 4.18
5012 5459 2.976350 TGTCGGCTCGTGACTCGT 60.976 61.111 0.00 0.00 40.80 4.18
5013 5460 2.254651 GTCGGCTCGTGACTCGTT 59.745 61.111 0.00 0.00 40.80 3.85
5014 5461 1.371389 GTCGGCTCGTGACTCGTTT 60.371 57.895 0.00 0.00 40.80 3.60
5015 5462 0.110056 GTCGGCTCGTGACTCGTTTA 60.110 55.000 0.00 0.00 40.80 2.01
5016 5463 0.806868 TCGGCTCGTGACTCGTTTAT 59.193 50.000 0.00 0.00 40.80 1.40
5017 5464 1.189403 CGGCTCGTGACTCGTTTATC 58.811 55.000 0.00 0.00 40.80 1.75
5018 5465 1.189403 GGCTCGTGACTCGTTTATCG 58.811 55.000 0.00 0.00 40.80 2.92
5019 5466 0.566593 GCTCGTGACTCGTTTATCGC 59.433 55.000 0.00 0.00 40.80 4.58
5020 5467 1.794437 GCTCGTGACTCGTTTATCGCT 60.794 52.381 0.00 0.00 40.80 4.93
5021 5468 2.516923 CTCGTGACTCGTTTATCGCTT 58.483 47.619 0.00 0.00 40.80 4.68
5022 5469 2.247637 TCGTGACTCGTTTATCGCTTG 58.752 47.619 0.00 0.00 40.80 4.01
5023 5470 1.983605 CGTGACTCGTTTATCGCTTGT 59.016 47.619 0.00 0.00 39.67 3.16
5024 5471 2.222289 CGTGACTCGTTTATCGCTTGTG 60.222 50.000 0.00 0.00 39.67 3.33
5025 5472 2.984471 GTGACTCGTTTATCGCTTGTGA 59.016 45.455 0.00 0.00 39.67 3.58
5026 5473 3.059570 GTGACTCGTTTATCGCTTGTGAG 59.940 47.826 0.00 0.00 39.67 3.51
5027 5474 1.993370 ACTCGTTTATCGCTTGTGAGC 59.007 47.619 0.00 0.00 45.65 4.26
5043 5490 4.319249 GCAACGTGCTTTTGGGTC 57.681 55.556 0.00 0.00 40.96 4.46
5044 5491 1.435515 GCAACGTGCTTTTGGGTCA 59.564 52.632 0.00 0.00 40.96 4.02
5045 5492 0.179124 GCAACGTGCTTTTGGGTCAA 60.179 50.000 0.00 0.00 40.96 3.18
5046 5493 1.537990 GCAACGTGCTTTTGGGTCAAT 60.538 47.619 0.00 0.00 40.96 2.57
5047 5494 2.820330 CAACGTGCTTTTGGGTCAATT 58.180 42.857 0.00 0.00 0.00 2.32
5048 5495 3.194062 CAACGTGCTTTTGGGTCAATTT 58.806 40.909 0.00 0.00 0.00 1.82
5049 5496 2.820330 ACGTGCTTTTGGGTCAATTTG 58.180 42.857 0.00 0.00 0.00 2.32
5050 5497 2.134346 CGTGCTTTTGGGTCAATTTGG 58.866 47.619 0.00 0.00 0.00 3.28
5051 5498 2.493035 GTGCTTTTGGGTCAATTTGGG 58.507 47.619 0.00 0.00 0.00 4.12
5052 5499 1.202746 TGCTTTTGGGTCAATTTGGGC 60.203 47.619 0.00 0.00 0.00 5.36
5053 5500 1.072173 GCTTTTGGGTCAATTTGGGCT 59.928 47.619 0.00 0.00 0.00 5.19
5054 5501 2.769893 CTTTTGGGTCAATTTGGGCTG 58.230 47.619 0.00 0.00 0.00 4.85
5055 5502 1.799933 TTTGGGTCAATTTGGGCTGT 58.200 45.000 0.00 0.00 0.00 4.40
5056 5503 1.799933 TTGGGTCAATTTGGGCTGTT 58.200 45.000 0.00 0.00 0.00 3.16
5057 5504 1.799933 TGGGTCAATTTGGGCTGTTT 58.200 45.000 0.00 0.00 0.00 2.83
5058 5505 2.122768 TGGGTCAATTTGGGCTGTTTT 58.877 42.857 0.00 0.00 0.00 2.43
5059 5506 2.158842 TGGGTCAATTTGGGCTGTTTTG 60.159 45.455 0.00 0.00 0.00 2.44
5060 5507 2.103941 GGGTCAATTTGGGCTGTTTTGA 59.896 45.455 0.00 0.00 0.00 2.69
5061 5508 3.392882 GGTCAATTTGGGCTGTTTTGAG 58.607 45.455 0.00 0.00 0.00 3.02
5062 5509 3.392882 GTCAATTTGGGCTGTTTTGAGG 58.607 45.455 0.00 0.00 0.00 3.86
5063 5510 2.368221 TCAATTTGGGCTGTTTTGAGGG 59.632 45.455 0.00 0.00 0.00 4.30
5064 5511 2.101640 ATTTGGGCTGTTTTGAGGGT 57.898 45.000 0.00 0.00 0.00 4.34
5065 5512 1.872773 TTTGGGCTGTTTTGAGGGTT 58.127 45.000 0.00 0.00 0.00 4.11
5066 5513 1.872773 TTGGGCTGTTTTGAGGGTTT 58.127 45.000 0.00 0.00 0.00 3.27
5067 5514 1.408969 TGGGCTGTTTTGAGGGTTTC 58.591 50.000 0.00 0.00 0.00 2.78
5068 5515 1.063266 TGGGCTGTTTTGAGGGTTTCT 60.063 47.619 0.00 0.00 0.00 2.52
5069 5516 2.175931 TGGGCTGTTTTGAGGGTTTCTA 59.824 45.455 0.00 0.00 0.00 2.10
5070 5517 3.181423 TGGGCTGTTTTGAGGGTTTCTAT 60.181 43.478 0.00 0.00 0.00 1.98
5071 5518 4.043561 TGGGCTGTTTTGAGGGTTTCTATA 59.956 41.667 0.00 0.00 0.00 1.31
5072 5519 4.398358 GGGCTGTTTTGAGGGTTTCTATAC 59.602 45.833 0.00 0.00 0.00 1.47
5073 5520 5.254115 GGCTGTTTTGAGGGTTTCTATACT 58.746 41.667 0.00 0.00 0.00 2.12
5074 5521 5.123979 GGCTGTTTTGAGGGTTTCTATACTG 59.876 44.000 0.00 0.00 0.00 2.74
5075 5522 5.705905 GCTGTTTTGAGGGTTTCTATACTGT 59.294 40.000 0.00 0.00 0.00 3.55
5076 5523 6.206829 GCTGTTTTGAGGGTTTCTATACTGTT 59.793 38.462 0.00 0.00 0.00 3.16
5077 5524 7.255486 GCTGTTTTGAGGGTTTCTATACTGTTT 60.255 37.037 0.00 0.00 0.00 2.83
5078 5525 8.528044 TGTTTTGAGGGTTTCTATACTGTTTT 57.472 30.769 0.00 0.00 0.00 2.43
5079 5526 8.973182 TGTTTTGAGGGTTTCTATACTGTTTTT 58.027 29.630 0.00 0.00 0.00 1.94
5080 5527 9.244799 GTTTTGAGGGTTTCTATACTGTTTTTG 57.755 33.333 0.00 0.00 0.00 2.44
5081 5528 7.519032 TTGAGGGTTTCTATACTGTTTTTGG 57.481 36.000 0.00 0.00 0.00 3.28
5082 5529 6.007703 TGAGGGTTTCTATACTGTTTTTGGG 58.992 40.000 0.00 0.00 0.00 4.12
5083 5530 5.330233 AGGGTTTCTATACTGTTTTTGGGG 58.670 41.667 0.00 0.00 0.00 4.96
5084 5531 4.081862 GGGTTTCTATACTGTTTTTGGGGC 60.082 45.833 0.00 0.00 0.00 5.80
5085 5532 4.081862 GGTTTCTATACTGTTTTTGGGGCC 60.082 45.833 0.00 0.00 0.00 5.80
5086 5533 4.668138 TTCTATACTGTTTTTGGGGCCT 57.332 40.909 0.84 0.00 0.00 5.19
5087 5534 5.782677 TTCTATACTGTTTTTGGGGCCTA 57.217 39.130 0.84 0.00 0.00 3.93
5088 5535 5.987019 TCTATACTGTTTTTGGGGCCTAT 57.013 39.130 0.84 0.00 0.00 2.57
5089 5536 6.335781 TCTATACTGTTTTTGGGGCCTATT 57.664 37.500 0.84 0.00 0.00 1.73
5090 5537 6.737608 TCTATACTGTTTTTGGGGCCTATTT 58.262 36.000 0.84 0.00 0.00 1.40
5091 5538 5.675684 ATACTGTTTTTGGGGCCTATTTG 57.324 39.130 0.84 0.00 0.00 2.32
5092 5539 3.313791 ACTGTTTTTGGGGCCTATTTGT 58.686 40.909 0.84 0.00 0.00 2.83
5093 5540 3.323691 ACTGTTTTTGGGGCCTATTTGTC 59.676 43.478 0.84 0.00 0.00 3.18
5094 5541 3.309296 TGTTTTTGGGGCCTATTTGTCA 58.691 40.909 0.84 0.00 0.00 3.58
5095 5542 3.711704 TGTTTTTGGGGCCTATTTGTCAA 59.288 39.130 0.84 0.00 0.00 3.18
5096 5543 4.164221 TGTTTTTGGGGCCTATTTGTCAAA 59.836 37.500 0.84 0.00 0.00 2.69
5097 5544 5.126779 GTTTTTGGGGCCTATTTGTCAAAA 58.873 37.500 0.84 6.99 33.91 2.44
5098 5545 5.373812 TTTTGGGGCCTATTTGTCAAAAA 57.626 34.783 0.84 0.00 33.16 1.94
5099 5546 5.574970 TTTGGGGCCTATTTGTCAAAAAT 57.425 34.783 0.84 0.00 0.00 1.82
5100 5547 6.688073 TTTGGGGCCTATTTGTCAAAAATA 57.312 33.333 0.84 0.00 0.00 1.40
5101 5548 6.688073 TTGGGGCCTATTTGTCAAAAATAA 57.312 33.333 0.84 0.00 0.00 1.40
5102 5549 6.882768 TGGGGCCTATTTGTCAAAAATAAT 57.117 33.333 0.84 0.00 0.00 1.28
5103 5550 7.264294 TGGGGCCTATTTGTCAAAAATAATT 57.736 32.000 0.84 0.00 0.00 1.40
5104 5551 7.334858 TGGGGCCTATTTGTCAAAAATAATTC 58.665 34.615 0.84 0.00 0.00 2.17
5105 5552 7.181845 TGGGGCCTATTTGTCAAAAATAATTCT 59.818 33.333 0.84 0.00 0.00 2.40
5106 5553 8.700973 GGGGCCTATTTGTCAAAAATAATTCTA 58.299 33.333 0.84 0.00 0.00 2.10
5185 5632 2.125512 CCGTGTCTGGCACCTAGC 60.126 66.667 6.84 0.00 44.97 3.42
5186 5633 2.650116 CCGTGTCTGGCACCTAGCT 61.650 63.158 6.84 0.00 44.97 3.32
5187 5634 1.293498 CGTGTCTGGCACCTAGCTT 59.707 57.895 6.84 0.00 44.97 3.74
5188 5635 0.737715 CGTGTCTGGCACCTAGCTTC 60.738 60.000 6.84 0.00 44.97 3.86
5189 5636 0.737715 GTGTCTGGCACCTAGCTTCG 60.738 60.000 0.00 0.00 44.79 3.79
5190 5637 1.185618 TGTCTGGCACCTAGCTTCGT 61.186 55.000 0.00 0.00 44.79 3.85
5191 5638 0.737715 GTCTGGCACCTAGCTTCGTG 60.738 60.000 8.18 8.18 44.79 4.35
5192 5639 1.448540 CTGGCACCTAGCTTCGTGG 60.449 63.158 13.07 4.55 44.79 4.94
5193 5640 2.820037 GGCACCTAGCTTCGTGGC 60.820 66.667 19.18 19.18 46.47 5.01
5194 5641 2.820037 GCACCTAGCTTCGTGGCC 60.820 66.667 13.07 0.00 41.15 5.36
5195 5642 2.125106 CACCTAGCTTCGTGGCCC 60.125 66.667 0.00 0.00 0.00 5.80
5196 5643 2.606519 ACCTAGCTTCGTGGCCCA 60.607 61.111 0.00 0.00 0.00 5.36
5197 5644 2.187946 CCTAGCTTCGTGGCCCAG 59.812 66.667 0.00 0.00 0.00 4.45
5198 5645 2.187946 CTAGCTTCGTGGCCCAGG 59.812 66.667 0.00 0.00 0.00 4.45
5199 5646 4.096003 TAGCTTCGTGGCCCAGGC 62.096 66.667 0.00 0.00 41.06 4.85
5228 5675 3.409856 CGAGCACGGCCCATTTAG 58.590 61.111 0.00 0.00 35.72 1.85
5229 5676 2.823829 CGAGCACGGCCCATTTAGC 61.824 63.158 0.00 0.00 35.72 3.09
5237 5684 1.517361 GCCCATTTAGCCAAGTGCC 59.483 57.895 0.00 0.00 42.71 5.01
5238 5685 1.257055 GCCCATTTAGCCAAGTGCCA 61.257 55.000 0.00 0.00 42.71 4.92
5239 5686 1.488390 CCCATTTAGCCAAGTGCCAT 58.512 50.000 0.00 0.00 42.71 4.40
5240 5687 1.832998 CCCATTTAGCCAAGTGCCATT 59.167 47.619 0.00 0.00 42.71 3.16
5241 5688 2.236893 CCCATTTAGCCAAGTGCCATTT 59.763 45.455 0.00 0.00 42.71 2.32
5242 5689 3.307621 CCCATTTAGCCAAGTGCCATTTT 60.308 43.478 0.00 0.00 42.71 1.82
5243 5690 4.081198 CCCATTTAGCCAAGTGCCATTTTA 60.081 41.667 0.00 0.00 42.71 1.52
5244 5691 5.111293 CCATTTAGCCAAGTGCCATTTTAG 58.889 41.667 0.00 0.00 42.71 1.85
5245 5692 4.799564 TTTAGCCAAGTGCCATTTTAGG 57.200 40.909 0.00 0.00 42.71 2.69
5256 5703 3.806625 CCATTTTAGGCCCATGAAGTG 57.193 47.619 0.00 0.00 0.00 3.16
5257 5704 3.099141 CCATTTTAGGCCCATGAAGTGT 58.901 45.455 0.00 0.00 0.00 3.55
5258 5705 3.131046 CCATTTTAGGCCCATGAAGTGTC 59.869 47.826 0.00 0.00 0.00 3.67
5259 5706 2.107950 TTTAGGCCCATGAAGTGTCG 57.892 50.000 0.00 0.00 0.00 4.35
5260 5707 0.251916 TTAGGCCCATGAAGTGTCGG 59.748 55.000 0.00 0.00 0.00 4.79
5261 5708 1.622607 TAGGCCCATGAAGTGTCGGG 61.623 60.000 0.00 0.00 42.03 5.14
5263 5710 2.350895 CCCATGAAGTGTCGGGCA 59.649 61.111 0.00 0.00 0.00 5.36
5304 5751 4.039092 CCCAGGTGGCCAGGTCTG 62.039 72.222 5.11 14.56 0.00 3.51
5305 5752 3.252284 CCAGGTGGCCAGGTCTGT 61.252 66.667 21.87 0.00 0.00 3.41
5306 5753 2.033141 CAGGTGGCCAGGTCTGTG 59.967 66.667 5.11 0.00 0.00 3.66
5307 5754 3.252284 AGGTGGCCAGGTCTGTGG 61.252 66.667 5.11 0.00 41.01 4.17
5313 5760 2.124983 CCAGGTCTGTGGCCGATG 60.125 66.667 0.00 0.00 0.00 3.84
5314 5761 2.821366 CAGGTCTGTGGCCGATGC 60.821 66.667 0.00 0.00 0.00 3.91
5315 5762 3.321648 AGGTCTGTGGCCGATGCA 61.322 61.111 0.00 0.00 40.13 3.96
5316 5763 2.821366 GGTCTGTGGCCGATGCAG 60.821 66.667 0.00 4.11 40.13 4.41
5317 5764 2.821366 GTCTGTGGCCGATGCAGG 60.821 66.667 13.85 0.00 40.13 4.85
5318 5765 4.100084 TCTGTGGCCGATGCAGGG 62.100 66.667 13.85 2.25 40.13 4.45
5338 5785 2.966516 GGGGGACACTGAGAAGTATAGG 59.033 54.545 0.00 0.00 0.00 2.57
5339 5786 3.630311 GGGGGACACTGAGAAGTATAGGT 60.630 52.174 0.00 0.00 0.00 3.08
5340 5787 3.385111 GGGGACACTGAGAAGTATAGGTG 59.615 52.174 0.00 0.00 0.00 4.00
5341 5788 3.385111 GGGACACTGAGAAGTATAGGTGG 59.615 52.174 0.00 0.00 0.00 4.61
5342 5789 4.279145 GGACACTGAGAAGTATAGGTGGA 58.721 47.826 0.00 0.00 0.00 4.02
5343 5790 4.339814 GGACACTGAGAAGTATAGGTGGAG 59.660 50.000 0.00 0.00 0.00 3.86
5344 5791 5.194432 GACACTGAGAAGTATAGGTGGAGA 58.806 45.833 0.00 0.00 0.00 3.71
5345 5792 5.772004 ACACTGAGAAGTATAGGTGGAGAT 58.228 41.667 0.00 0.00 0.00 2.75
5346 5793 5.596361 ACACTGAGAAGTATAGGTGGAGATG 59.404 44.000 0.00 0.00 0.00 2.90
5347 5794 5.596361 CACTGAGAAGTATAGGTGGAGATGT 59.404 44.000 0.00 0.00 0.00 3.06
5348 5795 6.773200 CACTGAGAAGTATAGGTGGAGATGTA 59.227 42.308 0.00 0.00 0.00 2.29
5349 5796 7.001674 ACTGAGAAGTATAGGTGGAGATGTAG 58.998 42.308 0.00 0.00 0.00 2.74
5350 5797 6.307776 TGAGAAGTATAGGTGGAGATGTAGG 58.692 44.000 0.00 0.00 0.00 3.18
5351 5798 6.126156 TGAGAAGTATAGGTGGAGATGTAGGT 60.126 42.308 0.00 0.00 0.00 3.08
5352 5799 6.071984 AGAAGTATAGGTGGAGATGTAGGTG 58.928 44.000 0.00 0.00 0.00 4.00
5353 5800 5.664815 AGTATAGGTGGAGATGTAGGTGA 57.335 43.478 0.00 0.00 0.00 4.02
5354 5801 5.636123 AGTATAGGTGGAGATGTAGGTGAG 58.364 45.833 0.00 0.00 0.00 3.51
5355 5802 2.166907 AGGTGGAGATGTAGGTGAGG 57.833 55.000 0.00 0.00 0.00 3.86
5356 5803 1.362932 AGGTGGAGATGTAGGTGAGGT 59.637 52.381 0.00 0.00 0.00 3.85
5357 5804 1.482593 GGTGGAGATGTAGGTGAGGTG 59.517 57.143 0.00 0.00 0.00 4.00
5358 5805 2.180276 GTGGAGATGTAGGTGAGGTGT 58.820 52.381 0.00 0.00 0.00 4.16
5359 5806 2.567615 GTGGAGATGTAGGTGAGGTGTT 59.432 50.000 0.00 0.00 0.00 3.32
5360 5807 3.008049 GTGGAGATGTAGGTGAGGTGTTT 59.992 47.826 0.00 0.00 0.00 2.83
5361 5808 3.007940 TGGAGATGTAGGTGAGGTGTTTG 59.992 47.826 0.00 0.00 0.00 2.93
5362 5809 3.600388 GAGATGTAGGTGAGGTGTTTGG 58.400 50.000 0.00 0.00 0.00 3.28
5363 5810 3.248024 AGATGTAGGTGAGGTGTTTGGA 58.752 45.455 0.00 0.00 0.00 3.53
5364 5811 3.261897 AGATGTAGGTGAGGTGTTTGGAG 59.738 47.826 0.00 0.00 0.00 3.86
5365 5812 1.697432 TGTAGGTGAGGTGTTTGGAGG 59.303 52.381 0.00 0.00 0.00 4.30
5366 5813 1.975680 GTAGGTGAGGTGTTTGGAGGA 59.024 52.381 0.00 0.00 0.00 3.71
5367 5814 1.059913 AGGTGAGGTGTTTGGAGGAG 58.940 55.000 0.00 0.00 0.00 3.69
5368 5815 0.765510 GGTGAGGTGTTTGGAGGAGT 59.234 55.000 0.00 0.00 0.00 3.85
5369 5816 1.143073 GGTGAGGTGTTTGGAGGAGTT 59.857 52.381 0.00 0.00 0.00 3.01
5370 5817 2.222027 GTGAGGTGTTTGGAGGAGTTG 58.778 52.381 0.00 0.00 0.00 3.16
5371 5818 1.142870 TGAGGTGTTTGGAGGAGTTGG 59.857 52.381 0.00 0.00 0.00 3.77
5372 5819 0.478507 AGGTGTTTGGAGGAGTTGGG 59.521 55.000 0.00 0.00 0.00 4.12
5373 5820 0.539669 GGTGTTTGGAGGAGTTGGGG 60.540 60.000 0.00 0.00 0.00 4.96
5374 5821 0.185175 GTGTTTGGAGGAGTTGGGGT 59.815 55.000 0.00 0.00 0.00 4.95
5375 5822 0.476771 TGTTTGGAGGAGTTGGGGTC 59.523 55.000 0.00 0.00 0.00 4.46
5376 5823 0.476771 GTTTGGAGGAGTTGGGGTCA 59.523 55.000 0.00 0.00 0.00 4.02
5377 5824 1.133606 GTTTGGAGGAGTTGGGGTCAA 60.134 52.381 0.00 0.00 0.00 3.18
5378 5825 1.227249 TTGGAGGAGTTGGGGTCAAA 58.773 50.000 0.00 0.00 34.28 2.69
5379 5826 1.227249 TGGAGGAGTTGGGGTCAAAA 58.773 50.000 0.00 0.00 34.28 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.803487 TCTTGATCATCTACATCCATATGGT 57.197 36.000 21.28 5.10 37.43 3.55
249 256 2.505407 TGCACAATCATACAGCCCTAGT 59.495 45.455 0.00 0.00 0.00 2.57
332 339 5.415389 TCATGACCAACATATGACAAGGTTG 59.585 40.000 10.38 2.14 40.12 3.77
369 376 7.272244 TGTGGAATCAGTTATCATACACGAAT 58.728 34.615 0.00 0.00 0.00 3.34
406 413 9.261035 ACACTATCTATGTAGGCTAGCATTAAT 57.739 33.333 18.24 9.22 0.00 1.40
427 434 4.935205 GCTGATCCACAACATAACACACTA 59.065 41.667 0.00 0.00 0.00 2.74
456 463 8.078596 GCACCCAAATATGATAAATCTCAAGAC 58.921 37.037 0.00 0.00 0.00 3.01
467 474 6.776603 TGATCACAATGCACCCAAATATGATA 59.223 34.615 0.00 0.00 0.00 2.15
551 559 7.877612 GTGAAAATCAATATCAAACACCCCTTT 59.122 33.333 0.00 0.00 0.00 3.11
603 611 8.199449 CCGGTGACTTGGTTAAATCTATACTAA 58.801 37.037 0.00 0.00 0.00 2.24
649 657 6.069323 TGTTAGGGTTGGTGACATATTACCAT 60.069 38.462 0.00 0.00 45.68 3.55
660 668 0.393820 GACCGTGTTAGGGTTGGTGA 59.606 55.000 0.00 0.00 36.34 4.02
696 704 6.484977 GGAGAGACAATGGGAAAATATGAGTC 59.515 42.308 0.00 0.00 0.00 3.36
1057 1074 1.603425 CGTCGGAGAGATCTAGAGCGA 60.603 57.143 1.62 0.00 36.95 4.93
1119 1136 0.689623 CTTGCTGGAGACCTGGAAGT 59.310 55.000 16.20 0.00 42.58 3.01
1120 1137 0.035630 CCTTGCTGGAGACCTGGAAG 60.036 60.000 17.04 17.04 45.34 3.46
1121 1138 2.069776 CCTTGCTGGAGACCTGGAA 58.930 57.895 0.00 0.00 38.35 3.53
1122 1139 2.596851 GCCTTGCTGGAGACCTGGA 61.597 63.158 0.00 0.00 38.35 3.86
1123 1140 2.045536 GCCTTGCTGGAGACCTGG 60.046 66.667 0.00 0.00 38.35 4.45
1124 1141 2.045536 GGCCTTGCTGGAGACCTG 60.046 66.667 0.00 0.00 38.35 4.00
1125 1142 2.204059 AGGCCTTGCTGGAGACCT 60.204 61.111 0.00 0.00 38.35 3.85
1126 1143 2.270527 GAGGCCTTGCTGGAGACC 59.729 66.667 6.77 0.00 38.35 3.85
1174 1191 1.560146 AGAAAGAAGGAACCGGGATCC 59.440 52.381 15.13 15.13 37.22 3.36
1176 1193 2.266279 TCAGAAAGAAGGAACCGGGAT 58.734 47.619 6.32 0.00 0.00 3.85
1277 1301 0.177604 CAAACAGTGCAGCCCCAAAA 59.822 50.000 0.00 0.00 0.00 2.44
1281 1305 2.924105 GCTCAAACAGTGCAGCCCC 61.924 63.158 0.00 0.00 36.75 5.80
1288 1312 5.344128 GCAATAAATCACAGCTCAAACAGTG 59.656 40.000 0.00 0.00 0.00 3.66
1342 1366 8.446273 TGTGCGATTTTTGATTTTTCTTTTTGA 58.554 25.926 0.00 0.00 0.00 2.69
1343 1367 8.598509 TGTGCGATTTTTGATTTTTCTTTTTG 57.401 26.923 0.00 0.00 0.00 2.44
1344 1368 9.786105 ATTGTGCGATTTTTGATTTTTCTTTTT 57.214 22.222 0.00 0.00 0.00 1.94
1347 1371 7.226325 TGGATTGTGCGATTTTTGATTTTTCTT 59.774 29.630 0.00 0.00 0.00 2.52
1349 1373 6.886307 TGGATTGTGCGATTTTTGATTTTTC 58.114 32.000 0.00 0.00 0.00 2.29
1350 1374 6.857777 TGGATTGTGCGATTTTTGATTTTT 57.142 29.167 0.00 0.00 0.00 1.94
1359 1383 1.888512 ACAGCTTGGATTGTGCGATTT 59.111 42.857 0.00 0.00 0.00 2.17
1373 1397 4.878397 GTCTGCATACCTAATTCACAGCTT 59.122 41.667 0.00 0.00 0.00 3.74
1391 1415 0.917259 CATTAGTCGACTGCGTCTGC 59.083 55.000 28.12 0.00 36.60 4.26
1396 1420 4.584029 AACAATTCATTAGTCGACTGCG 57.416 40.909 28.12 15.34 39.35 5.18
1401 1425 6.312399 ACAAGCAAACAATTCATTAGTCGA 57.688 33.333 0.00 0.00 0.00 4.20
1574 1598 2.100749 CACAAACCAGACCCAACTTTCC 59.899 50.000 0.00 0.00 0.00 3.13
1656 1680 2.128771 TGATTTCTTAGGGCTGTGGC 57.871 50.000 0.00 0.00 37.82 5.01
1745 1773 6.486993 ACTTTCACCTACATTCAGAAAAGGAC 59.513 38.462 13.83 0.00 0.00 3.85
1914 1943 3.546670 GGATCATCGCCGACGTAAATATC 59.453 47.826 0.00 0.00 41.18 1.63
1986 2015 8.379902 CGTTTATTGAAGCAAAGAAAAACAACT 58.620 29.630 0.00 0.00 0.00 3.16
1994 2024 3.003897 ACCGCGTTTATTGAAGCAAAGAA 59.996 39.130 4.92 0.00 0.00 2.52
2183 2264 4.235360 AGACAAACTCTTACATCCGTTCG 58.765 43.478 0.00 0.00 0.00 3.95
2218 2319 5.126061 ACATTACCTGATTGGCAAGCTAAAG 59.874 40.000 17.21 5.71 40.22 1.85
2250 2466 8.284693 TGTTTTAGGCGACAAAACTATTAAGTC 58.715 33.333 21.51 0.00 43.25 3.01
2465 2683 5.817296 TGAGTATGCACCATTCATTAGTGTC 59.183 40.000 0.00 0.00 33.96 3.67
2473 2691 2.358957 GCAGTGAGTATGCACCATTCA 58.641 47.619 0.00 0.00 43.31 2.57
2478 2696 2.918712 ATAGGCAGTGAGTATGCACC 57.081 50.000 0.00 0.00 45.68 5.01
2486 2704 8.009622 ACTCATATCATCATATAGGCAGTGAG 57.990 38.462 0.00 0.00 0.00 3.51
2549 2767 7.719193 TGCATTATAGTCTTTGGCATAGCTTTA 59.281 33.333 0.00 0.00 0.00 1.85
2553 2771 5.947228 TGCATTATAGTCTTTGGCATAGC 57.053 39.130 0.00 0.00 0.00 2.97
2590 2808 8.757877 AGCTTGGGCAATTCTAACAATAAATTA 58.242 29.630 0.00 0.00 41.70 1.40
2591 2809 7.550196 CAGCTTGGGCAATTCTAACAATAAATT 59.450 33.333 0.00 0.00 41.70 1.82
2592 2810 7.043565 CAGCTTGGGCAATTCTAACAATAAAT 58.956 34.615 0.00 0.00 41.70 1.40
2594 2812 5.480073 ACAGCTTGGGCAATTCTAACAATAA 59.520 36.000 0.00 0.00 41.70 1.40
2665 2883 8.856490 AGAATAACAGTTGCAAAGTACAAAAG 57.144 30.769 0.00 0.00 0.00 2.27
2705 2923 7.228706 ACAACCTATTAGACAACCACTTCAAAG 59.771 37.037 0.00 0.00 0.00 2.77
2722 2940 3.370527 CGTGAGATGGGGAACAACCTATT 60.371 47.826 0.00 0.00 38.98 1.73
2780 2998 9.276590 AGATGCATTATAATTGATCGAAGTGAA 57.723 29.630 0.00 0.00 0.00 3.18
2795 3013 7.878547 TGTCAATTTGTCCAGATGCATTATA 57.121 32.000 0.00 0.00 0.00 0.98
2807 3025 3.944015 CCTCCTGAGATGTCAATTTGTCC 59.056 47.826 0.00 0.00 30.14 4.02
2819 3037 6.142498 ACAAGAATAGATCACCTCCTGAGAT 58.858 40.000 0.00 0.00 30.20 2.75
2822 3040 6.194967 TGTACAAGAATAGATCACCTCCTGA 58.805 40.000 0.00 0.00 0.00 3.86
3290 3508 4.335315 ACTTTCAACACGATGCAAGAAGAA 59.665 37.500 0.00 0.00 29.73 2.52
3291 3509 3.876914 ACTTTCAACACGATGCAAGAAGA 59.123 39.130 0.00 0.00 29.73 2.87
3294 3512 2.942376 ACACTTTCAACACGATGCAAGA 59.058 40.909 0.00 0.00 29.73 3.02
3295 3513 3.038017 CACACTTTCAACACGATGCAAG 58.962 45.455 0.00 0.00 31.11 4.01
3302 3520 3.186909 TCTCAGTCACACTTTCAACACG 58.813 45.455 0.00 0.00 0.00 4.49
3322 3540 4.464597 ACCTGGAGACAACATAAGAGACTC 59.535 45.833 0.00 0.00 42.06 3.36
3324 3542 4.810191 ACCTGGAGACAACATAAGAGAC 57.190 45.455 0.00 0.00 42.06 3.36
3327 3545 6.630413 GCTGATTACCTGGAGACAACATAAGA 60.630 42.308 0.00 0.00 42.06 2.10
3328 3546 5.525378 GCTGATTACCTGGAGACAACATAAG 59.475 44.000 0.00 0.00 42.06 1.73
3329 3547 5.428253 GCTGATTACCTGGAGACAACATAA 58.572 41.667 0.00 0.00 42.06 1.90
3330 3548 4.141711 GGCTGATTACCTGGAGACAACATA 60.142 45.833 0.00 0.00 42.06 2.29
3331 3549 3.370953 GGCTGATTACCTGGAGACAACAT 60.371 47.826 0.00 0.00 42.06 2.71
3332 3550 2.027192 GGCTGATTACCTGGAGACAACA 60.027 50.000 0.00 0.00 42.06 3.33
3333 3551 2.237392 AGGCTGATTACCTGGAGACAAC 59.763 50.000 0.00 0.00 42.06 3.32
3336 3554 2.501723 TCAAGGCTGATTACCTGGAGAC 59.498 50.000 0.00 0.00 37.67 3.36
3340 3558 3.012518 CAACTCAAGGCTGATTACCTGG 58.987 50.000 0.00 0.00 37.67 4.45
3400 3618 1.413077 CTCCCCCGTCTGATAAACTCC 59.587 57.143 0.00 0.00 0.00 3.85
3424 3642 3.007398 CACTTGCTTCAGAAGGTCCTACT 59.993 47.826 12.30 0.00 0.00 2.57
3520 3740 5.342806 TGCTGTCGATCAGTTTGTTTTAG 57.657 39.130 13.91 0.00 45.23 1.85
3535 3755 6.306356 GCAATTATATGCCTTTATTGCTGTCG 59.694 38.462 10.01 0.00 44.59 4.35
3565 3785 5.455755 CCTGAGATTATTCAGATCCAGCCAA 60.456 44.000 4.67 0.00 45.95 4.52
3634 3854 9.507280 GACACTGATTAATGTATCAAACCAATG 57.493 33.333 0.00 0.00 34.32 2.82
3702 3924 8.698210 TCAATCAAATGCTTCTATGCCTTTTAT 58.302 29.630 0.00 0.00 30.53 1.40
3703 3925 8.065473 TCAATCAAATGCTTCTATGCCTTTTA 57.935 30.769 0.00 0.00 30.53 1.52
3810 4162 6.347725 GGTTAACAGTGTAAGCAAGAGTGATG 60.348 42.308 8.10 0.00 32.82 3.07
4049 4404 7.012421 CCCTTTTACTGAACCATACTATCAAGC 59.988 40.741 0.00 0.00 0.00 4.01
4083 4438 6.082338 GCAGTCAAACATCACATTCTTACAG 58.918 40.000 0.00 0.00 0.00 2.74
4111 4466 6.214208 AGCTGATAGCCATATTGGAATACTCA 59.786 38.462 0.00 0.00 43.77 3.41
4143 4498 9.054922 CCTGAAAATACACCAATTGAAAAACAT 57.945 29.630 7.12 0.00 0.00 2.71
4151 4506 4.806640 AGGCCTGAAAATACACCAATTG 57.193 40.909 3.11 0.00 0.00 2.32
4176 4531 3.469008 AATATCGTGCCTCGGAAATCA 57.531 42.857 0.00 0.00 40.32 2.57
4185 4541 2.967362 TGTTCGACAAATATCGTGCCT 58.033 42.857 0.00 0.00 42.80 4.75
4282 4708 7.172361 ACAGAAGAAAGTTTCTAGATTGTGAGC 59.828 37.037 18.31 0.00 39.61 4.26
4283 4709 8.600449 ACAGAAGAAAGTTTCTAGATTGTGAG 57.400 34.615 18.31 4.64 39.61 3.51
4293 4720 8.561738 TTTCAGTGTTACAGAAGAAAGTTTCT 57.438 30.769 12.50 12.50 43.15 2.52
4329 4756 3.959495 ATGTTGCCCCATTGTAGATCT 57.041 42.857 0.00 0.00 0.00 2.75
4391 4819 1.064389 GGCTCAAAGGGAATGCTACCT 60.064 52.381 0.00 0.00 39.21 3.08
4482 4917 3.296985 TTGGGATAGGGGGTGCCCT 62.297 63.158 7.26 0.00 44.66 5.19
4504 4939 1.145759 ATAGCAATGGTGTCGACGCG 61.146 55.000 21.89 3.53 0.00 6.01
4513 4948 1.068121 GGGGGAGCTATAGCAATGGT 58.932 55.000 26.07 5.26 45.16 3.55
4522 4957 2.079161 ATGGGGGATGGGGGAGCTAT 62.079 60.000 0.00 0.00 0.00 2.97
4524 4959 4.143266 ATGGGGGATGGGGGAGCT 62.143 66.667 0.00 0.00 0.00 4.09
4530 4965 2.895424 GCTACGGATGGGGGATGGG 61.895 68.421 0.00 0.00 0.00 4.00
4531 4966 2.146724 TGCTACGGATGGGGGATGG 61.147 63.158 0.00 0.00 0.00 3.51
4532 4967 1.071471 GTGCTACGGATGGGGGATG 59.929 63.158 0.00 0.00 0.00 3.51
4533 4968 2.147387 GGTGCTACGGATGGGGGAT 61.147 63.158 0.00 0.00 0.00 3.85
4534 4969 2.766651 GGTGCTACGGATGGGGGA 60.767 66.667 0.00 0.00 0.00 4.81
4535 4970 3.873812 GGGTGCTACGGATGGGGG 61.874 72.222 0.00 0.00 0.00 5.40
4536 4971 4.235762 CGGGTGCTACGGATGGGG 62.236 72.222 0.00 0.00 0.00 4.96
4546 4981 4.057428 GACAGCGTCTCGGGTGCT 62.057 66.667 0.00 0.00 38.95 4.40
4561 4996 4.803426 CACGGCGCCTCCTCTGAC 62.803 72.222 26.68 0.00 0.00 3.51
4577 5012 0.035534 AGCATACAACCACATCCGCA 60.036 50.000 0.00 0.00 0.00 5.69
4578 5013 0.657840 GAGCATACAACCACATCCGC 59.342 55.000 0.00 0.00 0.00 5.54
4580 5015 2.717639 AGGAGCATACAACCACATCC 57.282 50.000 0.00 0.00 0.00 3.51
4622 5067 4.838486 GCGAGACCCACGAGAGCG 62.838 72.222 0.00 0.00 44.79 5.03
4663 5108 1.623811 ACAAGGTCTTAGACATGGCGT 59.376 47.619 14.72 3.22 33.68 5.68
4674 5119 1.370064 CGTTCCCCGACAAGGTCTT 59.630 57.895 0.00 0.00 39.56 3.01
4681 5126 2.358125 CATGCACGTTCCCCGACA 60.358 61.111 0.00 0.00 40.70 4.35
4683 5128 3.309436 CTCCATGCACGTTCCCCGA 62.309 63.158 0.00 0.00 40.70 5.14
4684 5129 2.819595 CTCCATGCACGTTCCCCG 60.820 66.667 0.00 0.00 44.03 5.73
4734 5179 4.814294 GTGTAGTCTGCGGCCCCG 62.814 72.222 1.59 1.59 43.09 5.73
4740 5185 0.038251 TGCCAAGAGTGTAGTCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
4743 5188 0.977395 GGGTGCCAAGAGTGTAGTCT 59.023 55.000 0.00 0.00 0.00 3.24
4748 5193 0.766674 TACAGGGGTGCCAAGAGTGT 60.767 55.000 0.00 0.00 0.00 3.55
4750 5195 0.620556 CATACAGGGGTGCCAAGAGT 59.379 55.000 0.00 0.00 0.00 3.24
4764 5209 2.897271 AATCAAGCACCACCCATACA 57.103 45.000 0.00 0.00 0.00 2.29
4766 5211 6.429692 CGATATAAAATCAAGCACCACCCATA 59.570 38.462 0.00 0.00 0.00 2.74
4771 5216 4.556699 GCCCGATATAAAATCAAGCACCAC 60.557 45.833 0.00 0.00 0.00 4.16
4804 5251 4.410400 CCCACCAGCCGACTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
4808 5255 3.314331 CACTCCCACCAGCCGACT 61.314 66.667 0.00 0.00 0.00 4.18
4819 5266 3.809374 CTTATCGGCCGCCACTCCC 62.809 68.421 23.51 0.00 0.00 4.30
4820 5267 2.280186 CTTATCGGCCGCCACTCC 60.280 66.667 23.51 0.00 0.00 3.85
4821 5268 1.591863 GTCTTATCGGCCGCCACTC 60.592 63.158 23.51 5.25 0.00 3.51
4822 5269 2.499685 GTCTTATCGGCCGCCACT 59.500 61.111 23.51 7.46 0.00 4.00
4823 5270 1.741327 TAGGTCTTATCGGCCGCCAC 61.741 60.000 23.51 11.57 0.00 5.01
4824 5271 1.456145 TAGGTCTTATCGGCCGCCA 60.456 57.895 23.51 7.47 0.00 5.69
4825 5272 1.289380 CTAGGTCTTATCGGCCGCC 59.711 63.158 23.51 15.29 0.00 6.13
4826 5273 1.373121 GCTAGGTCTTATCGGCCGC 60.373 63.158 23.51 4.66 0.00 6.53
4827 5274 1.289380 GGCTAGGTCTTATCGGCCG 59.711 63.158 22.12 22.12 0.00 6.13
4828 5275 0.756903 TTGGCTAGGTCTTATCGGCC 59.243 55.000 0.00 0.00 39.93 6.13
4829 5276 2.614829 TTTGGCTAGGTCTTATCGGC 57.385 50.000 0.00 0.00 0.00 5.54
4830 5277 3.403038 CCATTTGGCTAGGTCTTATCGG 58.597 50.000 0.00 0.00 0.00 4.18
4831 5278 3.181454 ACCCATTTGGCTAGGTCTTATCG 60.181 47.826 0.00 0.00 37.83 2.92
4832 5279 4.390264 GACCCATTTGGCTAGGTCTTATC 58.610 47.826 0.80 0.00 44.46 1.75
4833 5280 3.181454 CGACCCATTTGGCTAGGTCTTAT 60.181 47.826 6.48 0.00 45.45 1.73
4834 5281 2.169769 CGACCCATTTGGCTAGGTCTTA 59.830 50.000 6.48 0.00 45.45 2.10
4835 5282 1.065418 CGACCCATTTGGCTAGGTCTT 60.065 52.381 6.48 0.00 45.45 3.01
4836 5283 0.541863 CGACCCATTTGGCTAGGTCT 59.458 55.000 6.48 0.00 45.45 3.85
4837 5284 0.463833 CCGACCCATTTGGCTAGGTC 60.464 60.000 0.00 0.00 44.42 3.85
4838 5285 1.607612 CCGACCCATTTGGCTAGGT 59.392 57.895 0.00 0.00 37.83 3.08
4839 5286 1.152963 CCCGACCCATTTGGCTAGG 60.153 63.158 0.00 0.00 37.83 3.02
4840 5287 0.463833 GTCCCGACCCATTTGGCTAG 60.464 60.000 0.00 0.00 37.83 3.42
4841 5288 0.912487 AGTCCCGACCCATTTGGCTA 60.912 55.000 0.00 0.00 37.83 3.93
4842 5289 2.231380 AGTCCCGACCCATTTGGCT 61.231 57.895 0.00 0.00 37.83 4.75
4843 5290 2.046285 CAGTCCCGACCCATTTGGC 61.046 63.158 0.00 0.00 37.83 4.52
4844 5291 2.046285 GCAGTCCCGACCCATTTGG 61.046 63.158 0.00 0.00 41.37 3.28
4845 5292 2.046285 GGCAGTCCCGACCCATTTG 61.046 63.158 0.00 0.00 0.00 2.32
4846 5293 2.231380 AGGCAGTCCCGACCCATTT 61.231 57.895 0.00 0.00 39.21 2.32
4847 5294 2.610859 AGGCAGTCCCGACCCATT 60.611 61.111 0.00 0.00 39.21 3.16
4848 5295 3.402681 CAGGCAGTCCCGACCCAT 61.403 66.667 0.00 0.00 39.21 4.00
4849 5296 4.631740 TCAGGCAGTCCCGACCCA 62.632 66.667 0.00 0.00 39.21 4.51
4850 5297 4.083862 GTCAGGCAGTCCCGACCC 62.084 72.222 0.00 0.00 39.21 4.46
4851 5298 4.083862 GGTCAGGCAGTCCCGACC 62.084 72.222 1.38 1.38 44.25 4.79
4852 5299 4.083862 GGGTCAGGCAGTCCCGAC 62.084 72.222 0.00 0.00 35.84 4.79
4856 5303 4.083862 GACGGGGTCAGGCAGTCC 62.084 72.222 0.00 0.00 32.09 3.85
4857 5304 4.083862 GGACGGGGTCAGGCAGTC 62.084 72.222 0.00 0.00 33.68 3.51
4871 5318 1.272037 TGTTTTAATGGGGGTCGGGAC 60.272 52.381 0.00 0.00 0.00 4.46
4872 5319 1.073931 TGTTTTAATGGGGGTCGGGA 58.926 50.000 0.00 0.00 0.00 5.14
4873 5320 1.754226 CATGTTTTAATGGGGGTCGGG 59.246 52.381 0.00 0.00 0.00 5.14
4874 5321 1.136110 GCATGTTTTAATGGGGGTCGG 59.864 52.381 0.00 0.00 0.00 4.79
4875 5322 1.136110 GGCATGTTTTAATGGGGGTCG 59.864 52.381 0.00 0.00 0.00 4.79
4876 5323 2.168313 CAGGCATGTTTTAATGGGGGTC 59.832 50.000 0.00 0.00 0.00 4.46
4877 5324 2.187100 CAGGCATGTTTTAATGGGGGT 58.813 47.619 0.00 0.00 0.00 4.95
4878 5325 1.485895 CCAGGCATGTTTTAATGGGGG 59.514 52.381 0.00 0.00 0.00 5.40
4879 5326 1.134431 GCCAGGCATGTTTTAATGGGG 60.134 52.381 6.55 0.00 0.00 4.96
4880 5327 1.554160 TGCCAGGCATGTTTTAATGGG 59.446 47.619 11.22 0.00 31.71 4.00
4881 5328 2.620242 GTGCCAGGCATGTTTTAATGG 58.380 47.619 19.75 0.00 41.91 3.16
4882 5329 2.094803 TCGTGCCAGGCATGTTTTAATG 60.095 45.455 29.45 5.34 44.84 1.90
4883 5330 2.094752 GTCGTGCCAGGCATGTTTTAAT 60.095 45.455 29.45 0.00 44.84 1.40
4884 5331 1.268352 GTCGTGCCAGGCATGTTTTAA 59.732 47.619 29.45 10.45 44.84 1.52
4885 5332 0.878416 GTCGTGCCAGGCATGTTTTA 59.122 50.000 29.45 10.83 44.84 1.52
4886 5333 1.106351 TGTCGTGCCAGGCATGTTTT 61.106 50.000 29.45 0.00 44.84 2.43
4887 5334 1.528076 TGTCGTGCCAGGCATGTTT 60.528 52.632 29.45 0.00 44.84 2.83
4888 5335 2.112928 TGTCGTGCCAGGCATGTT 59.887 55.556 29.45 0.00 44.84 2.71
4889 5336 2.669569 GTGTCGTGCCAGGCATGT 60.670 61.111 29.45 0.00 44.84 3.21
4890 5337 2.669229 TGTGTCGTGCCAGGCATG 60.669 61.111 25.99 25.99 45.79 4.06
4891 5338 2.359107 CTGTGTCGTGCCAGGCAT 60.359 61.111 19.75 0.00 41.91 4.40
4898 5345 3.434319 CCATGGGCTGTGTCGTGC 61.434 66.667 2.85 0.00 0.00 5.34
4899 5346 3.434319 GCCATGGGCTGTGTCGTG 61.434 66.667 15.13 0.00 46.69 4.35
4908 5355 2.185004 ATATACAAGTCGCCATGGGC 57.815 50.000 15.13 4.92 46.75 5.36
4909 5356 5.705441 ACATTTATATACAAGTCGCCATGGG 59.295 40.000 15.13 3.69 0.00 4.00
4910 5357 6.204688 ACACATTTATATACAAGTCGCCATGG 59.795 38.462 7.63 7.63 0.00 3.66
4911 5358 7.171508 AGACACATTTATATACAAGTCGCCATG 59.828 37.037 0.00 0.00 0.00 3.66
4912 5359 7.217200 AGACACATTTATATACAAGTCGCCAT 58.783 34.615 0.00 0.00 0.00 4.40
4913 5360 6.578944 AGACACATTTATATACAAGTCGCCA 58.421 36.000 0.00 0.00 0.00 5.69
4914 5361 7.345192 CAAGACACATTTATATACAAGTCGCC 58.655 38.462 0.00 0.00 0.00 5.54
4915 5362 6.846283 GCAAGACACATTTATATACAAGTCGC 59.154 38.462 0.00 0.00 0.00 5.19
4916 5363 7.345192 GGCAAGACACATTTATATACAAGTCG 58.655 38.462 0.00 0.00 0.00 4.18
4917 5364 7.011109 ACGGCAAGACACATTTATATACAAGTC 59.989 37.037 0.00 0.00 0.00 3.01
4918 5365 6.821665 ACGGCAAGACACATTTATATACAAGT 59.178 34.615 0.00 0.00 0.00 3.16
4919 5366 7.125755 CACGGCAAGACACATTTATATACAAG 58.874 38.462 0.00 0.00 0.00 3.16
4920 5367 6.596106 ACACGGCAAGACACATTTATATACAA 59.404 34.615 0.00 0.00 0.00 2.41
4921 5368 6.110033 ACACGGCAAGACACATTTATATACA 58.890 36.000 0.00 0.00 0.00 2.29
4922 5369 6.561533 CGACACGGCAAGACACATTTATATAC 60.562 42.308 0.00 0.00 0.00 1.47
4923 5370 5.460748 CGACACGGCAAGACACATTTATATA 59.539 40.000 0.00 0.00 0.00 0.86
4924 5371 4.270084 CGACACGGCAAGACACATTTATAT 59.730 41.667 0.00 0.00 0.00 0.86
4925 5372 3.615056 CGACACGGCAAGACACATTTATA 59.385 43.478 0.00 0.00 0.00 0.98
4926 5373 2.415168 CGACACGGCAAGACACATTTAT 59.585 45.455 0.00 0.00 0.00 1.40
4927 5374 1.795872 CGACACGGCAAGACACATTTA 59.204 47.619 0.00 0.00 0.00 1.40
4928 5375 0.586319 CGACACGGCAAGACACATTT 59.414 50.000 0.00 0.00 0.00 2.32
4929 5376 0.249699 TCGACACGGCAAGACACATT 60.250 50.000 0.00 0.00 0.00 2.71
4930 5377 0.944311 GTCGACACGGCAAGACACAT 60.944 55.000 11.55 0.00 34.09 3.21
4931 5378 1.590525 GTCGACACGGCAAGACACA 60.591 57.895 11.55 0.00 34.09 3.72
4932 5379 1.276145 GAGTCGACACGGCAAGACAC 61.276 60.000 19.50 0.00 36.18 3.67
4933 5380 1.007734 GAGTCGACACGGCAAGACA 60.008 57.895 19.50 0.00 36.18 3.41
4934 5381 2.081212 CGAGTCGACACGGCAAGAC 61.081 63.158 24.93 1.61 32.13 3.01
4935 5382 2.254350 CGAGTCGACACGGCAAGA 59.746 61.111 24.93 0.00 32.13 3.02
4936 5383 3.470567 GCGAGTCGACACGGCAAG 61.471 66.667 31.17 8.70 32.13 4.01
4937 5384 3.973516 AGCGAGTCGACACGGCAA 61.974 61.111 31.17 0.00 32.13 4.52
4938 5385 4.700365 CAGCGAGTCGACACGGCA 62.700 66.667 31.17 0.00 32.13 5.69
4952 5399 2.505557 GCATGAAAGTGCGGCAGC 60.506 61.111 1.18 0.31 45.41 5.25
4953 5400 2.180017 GGCATGAAAGTGCGGCAG 59.820 61.111 1.18 0.00 45.97 4.85
4954 5401 3.372730 GGGCATGAAAGTGCGGCA 61.373 61.111 0.00 0.00 45.97 5.69
4955 5402 3.346631 CTGGGCATGAAAGTGCGGC 62.347 63.158 0.00 0.00 45.97 6.53
4956 5403 2.703798 CCTGGGCATGAAAGTGCGG 61.704 63.158 0.00 0.00 45.97 5.69
4957 5404 2.879907 CCTGGGCATGAAAGTGCG 59.120 61.111 0.00 0.00 45.97 5.34
4958 5405 2.575461 GCCTGGGCATGAAAGTGC 59.425 61.111 6.75 0.00 44.31 4.40
4969 5416 4.728102 TAACGCGTCGTGCCTGGG 62.728 66.667 14.44 0.00 39.99 4.45
4970 5417 3.179265 CTAACGCGTCGTGCCTGG 61.179 66.667 14.44 0.00 39.99 4.45
4971 5418 0.730155 TAACTAACGCGTCGTGCCTG 60.730 55.000 14.44 0.23 39.99 4.85
4972 5419 0.039256 TTAACTAACGCGTCGTGCCT 60.039 50.000 14.44 0.00 39.99 4.75
4973 5420 0.783579 TTTAACTAACGCGTCGTGCC 59.216 50.000 14.44 0.00 39.99 5.01
4974 5421 2.159934 ACATTTAACTAACGCGTCGTGC 60.160 45.455 14.44 0.00 39.99 5.34
4975 5422 3.121261 ACACATTTAACTAACGCGTCGTG 60.121 43.478 14.44 8.47 39.99 4.35
4976 5423 3.052036 ACACATTTAACTAACGCGTCGT 58.948 40.909 14.44 10.64 43.97 4.34
4977 5424 3.642210 GACACATTTAACTAACGCGTCG 58.358 45.455 14.44 9.87 0.00 5.12
4978 5425 3.480825 CCGACACATTTAACTAACGCGTC 60.481 47.826 14.44 0.00 0.00 5.19
4979 5426 2.409378 CCGACACATTTAACTAACGCGT 59.591 45.455 5.58 5.58 0.00 6.01
4980 5427 2.781973 GCCGACACATTTAACTAACGCG 60.782 50.000 3.53 3.53 0.00 6.01
4981 5428 2.414138 AGCCGACACATTTAACTAACGC 59.586 45.455 0.00 0.00 0.00 4.84
4982 5429 3.241552 CGAGCCGACACATTTAACTAACG 60.242 47.826 0.00 0.00 0.00 3.18
4983 5430 3.676646 ACGAGCCGACACATTTAACTAAC 59.323 43.478 1.50 0.00 0.00 2.34
4984 5431 3.676172 CACGAGCCGACACATTTAACTAA 59.324 43.478 1.50 0.00 0.00 2.24
4985 5432 3.057386 TCACGAGCCGACACATTTAACTA 60.057 43.478 1.50 0.00 0.00 2.24
4986 5433 2.066262 CACGAGCCGACACATTTAACT 58.934 47.619 1.50 0.00 0.00 2.24
4987 5434 2.063266 TCACGAGCCGACACATTTAAC 58.937 47.619 1.50 0.00 0.00 2.01
4988 5435 2.063266 GTCACGAGCCGACACATTTAA 58.937 47.619 1.50 0.00 33.43 1.52
4989 5436 1.271379 AGTCACGAGCCGACACATTTA 59.729 47.619 1.50 0.00 35.77 1.40
4990 5437 0.033504 AGTCACGAGCCGACACATTT 59.966 50.000 1.50 0.00 35.77 2.32
4991 5438 0.388649 GAGTCACGAGCCGACACATT 60.389 55.000 1.50 0.00 35.77 2.71
4992 5439 1.213013 GAGTCACGAGCCGACACAT 59.787 57.895 1.50 0.00 35.77 3.21
4993 5440 2.643272 GAGTCACGAGCCGACACA 59.357 61.111 1.50 0.00 35.77 3.72
4994 5441 2.502080 CGAGTCACGAGCCGACAC 60.502 66.667 1.50 0.00 45.77 3.67
4995 5442 2.067091 AAACGAGTCACGAGCCGACA 62.067 55.000 0.00 0.00 45.77 4.35
4996 5443 0.110056 TAAACGAGTCACGAGCCGAC 60.110 55.000 0.00 0.00 45.77 4.79
4997 5444 0.806868 ATAAACGAGTCACGAGCCGA 59.193 50.000 0.00 0.00 45.77 5.54
4998 5445 1.189403 GATAAACGAGTCACGAGCCG 58.811 55.000 0.00 0.00 45.77 5.52
4999 5446 1.189403 CGATAAACGAGTCACGAGCC 58.811 55.000 0.00 0.00 45.77 4.70
5000 5447 0.566593 GCGATAAACGAGTCACGAGC 59.433 55.000 0.00 0.00 45.77 5.03
5001 5448 2.175530 AGCGATAAACGAGTCACGAG 57.824 50.000 0.00 0.00 45.77 4.18
5002 5449 2.247637 CAAGCGATAAACGAGTCACGA 58.752 47.619 0.00 0.00 45.77 4.35
5003 5450 1.983605 ACAAGCGATAAACGAGTCACG 59.016 47.619 0.00 0.00 45.77 4.35
5004 5451 2.984471 TCACAAGCGATAAACGAGTCAC 59.016 45.455 0.00 0.00 45.77 3.67
5005 5452 3.242518 CTCACAAGCGATAAACGAGTCA 58.757 45.455 0.00 0.00 45.77 3.41
5006 5453 2.028165 GCTCACAAGCGATAAACGAGTC 59.972 50.000 0.00 0.00 45.77 3.36
5007 5454 1.993370 GCTCACAAGCGATAAACGAGT 59.007 47.619 0.00 0.00 45.77 4.18
5008 5455 2.703190 GCTCACAAGCGATAAACGAG 57.297 50.000 0.00 0.00 45.77 4.18
5026 5473 0.179124 TTGACCCAAAAGCACGTTGC 60.179 50.000 2.28 2.28 45.46 4.17
5027 5474 2.507339 ATTGACCCAAAAGCACGTTG 57.493 45.000 0.00 0.00 0.00 4.10
5028 5475 3.194062 CAAATTGACCCAAAAGCACGTT 58.806 40.909 0.00 0.00 0.00 3.99
5029 5476 2.482839 CCAAATTGACCCAAAAGCACGT 60.483 45.455 0.00 0.00 0.00 4.49
5030 5477 2.134346 CCAAATTGACCCAAAAGCACG 58.866 47.619 0.00 0.00 0.00 5.34
5031 5478 2.493035 CCCAAATTGACCCAAAAGCAC 58.507 47.619 0.00 0.00 0.00 4.40
5032 5479 1.202746 GCCCAAATTGACCCAAAAGCA 60.203 47.619 0.00 0.00 0.00 3.91
5033 5480 1.072173 AGCCCAAATTGACCCAAAAGC 59.928 47.619 0.00 0.00 0.00 3.51
5034 5481 2.104622 ACAGCCCAAATTGACCCAAAAG 59.895 45.455 0.00 0.00 0.00 2.27
5035 5482 2.122768 ACAGCCCAAATTGACCCAAAA 58.877 42.857 0.00 0.00 0.00 2.44
5036 5483 1.799933 ACAGCCCAAATTGACCCAAA 58.200 45.000 0.00 0.00 0.00 3.28
5037 5484 1.799933 AACAGCCCAAATTGACCCAA 58.200 45.000 0.00 0.00 0.00 4.12
5038 5485 1.799933 AAACAGCCCAAATTGACCCA 58.200 45.000 0.00 0.00 0.00 4.51
5039 5486 2.103941 TCAAAACAGCCCAAATTGACCC 59.896 45.455 0.00 0.00 0.00 4.46
5040 5487 3.392882 CTCAAAACAGCCCAAATTGACC 58.607 45.455 0.00 0.00 0.00 4.02
5041 5488 3.392882 CCTCAAAACAGCCCAAATTGAC 58.607 45.455 0.00 0.00 0.00 3.18
5042 5489 2.368221 CCCTCAAAACAGCCCAAATTGA 59.632 45.455 0.00 0.00 0.00 2.57
5043 5490 2.104622 ACCCTCAAAACAGCCCAAATTG 59.895 45.455 0.00 0.00 0.00 2.32
5044 5491 2.407562 ACCCTCAAAACAGCCCAAATT 58.592 42.857 0.00 0.00 0.00 1.82
5045 5492 2.101640 ACCCTCAAAACAGCCCAAAT 57.898 45.000 0.00 0.00 0.00 2.32
5046 5493 1.872773 AACCCTCAAAACAGCCCAAA 58.127 45.000 0.00 0.00 0.00 3.28
5047 5494 1.760029 GAAACCCTCAAAACAGCCCAA 59.240 47.619 0.00 0.00 0.00 4.12
5048 5495 1.063266 AGAAACCCTCAAAACAGCCCA 60.063 47.619 0.00 0.00 0.00 5.36
5049 5496 1.704641 AGAAACCCTCAAAACAGCCC 58.295 50.000 0.00 0.00 0.00 5.19
5050 5497 5.123979 CAGTATAGAAACCCTCAAAACAGCC 59.876 44.000 0.00 0.00 0.00 4.85
5051 5498 5.705905 ACAGTATAGAAACCCTCAAAACAGC 59.294 40.000 0.00 0.00 0.00 4.40
5052 5499 7.745620 AACAGTATAGAAACCCTCAAAACAG 57.254 36.000 0.00 0.00 0.00 3.16
5053 5500 8.528044 AAAACAGTATAGAAACCCTCAAAACA 57.472 30.769 0.00 0.00 0.00 2.83
5054 5501 9.244799 CAAAAACAGTATAGAAACCCTCAAAAC 57.755 33.333 0.00 0.00 0.00 2.43
5055 5502 8.417884 CCAAAAACAGTATAGAAACCCTCAAAA 58.582 33.333 0.00 0.00 0.00 2.44
5056 5503 7.014808 CCCAAAAACAGTATAGAAACCCTCAAA 59.985 37.037 0.00 0.00 0.00 2.69
5057 5504 6.492087 CCCAAAAACAGTATAGAAACCCTCAA 59.508 38.462 0.00 0.00 0.00 3.02
5058 5505 6.007703 CCCAAAAACAGTATAGAAACCCTCA 58.992 40.000 0.00 0.00 0.00 3.86
5059 5506 5.417894 CCCCAAAAACAGTATAGAAACCCTC 59.582 44.000 0.00 0.00 0.00 4.30
5060 5507 5.330233 CCCCAAAAACAGTATAGAAACCCT 58.670 41.667 0.00 0.00 0.00 4.34
5061 5508 4.081862 GCCCCAAAAACAGTATAGAAACCC 60.082 45.833 0.00 0.00 0.00 4.11
5062 5509 4.081862 GGCCCCAAAAACAGTATAGAAACC 60.082 45.833 0.00 0.00 0.00 3.27
5063 5510 4.770531 AGGCCCCAAAAACAGTATAGAAAC 59.229 41.667 0.00 0.00 0.00 2.78
5064 5511 5.005628 AGGCCCCAAAAACAGTATAGAAA 57.994 39.130 0.00 0.00 0.00 2.52
5065 5512 4.668138 AGGCCCCAAAAACAGTATAGAA 57.332 40.909 0.00 0.00 0.00 2.10
5066 5513 5.987019 ATAGGCCCCAAAAACAGTATAGA 57.013 39.130 0.00 0.00 0.00 1.98
5067 5514 6.379988 ACAAATAGGCCCCAAAAACAGTATAG 59.620 38.462 0.00 0.00 0.00 1.31
5068 5515 6.257586 ACAAATAGGCCCCAAAAACAGTATA 58.742 36.000 0.00 0.00 0.00 1.47
5069 5516 5.090845 ACAAATAGGCCCCAAAAACAGTAT 58.909 37.500 0.00 0.00 0.00 2.12
5070 5517 4.484912 ACAAATAGGCCCCAAAAACAGTA 58.515 39.130 0.00 0.00 0.00 2.74
5071 5518 3.313791 ACAAATAGGCCCCAAAAACAGT 58.686 40.909 0.00 0.00 0.00 3.55
5072 5519 3.323403 TGACAAATAGGCCCCAAAAACAG 59.677 43.478 0.00 0.00 0.00 3.16
5073 5520 3.309296 TGACAAATAGGCCCCAAAAACA 58.691 40.909 0.00 0.00 0.00 2.83
5074 5521 4.344359 TTGACAAATAGGCCCCAAAAAC 57.656 40.909 0.00 0.00 0.00 2.43
5075 5522 5.373812 TTTTGACAAATAGGCCCCAAAAA 57.626 34.783 0.00 0.00 32.67 1.94
5076 5523 5.373812 TTTTTGACAAATAGGCCCCAAAA 57.626 34.783 0.00 2.75 33.42 2.44
5077 5524 5.574970 ATTTTTGACAAATAGGCCCCAAA 57.425 34.783 0.00 0.00 0.00 3.28
5078 5525 6.688073 TTATTTTTGACAAATAGGCCCCAA 57.312 33.333 0.00 0.00 0.00 4.12
5079 5526 6.882768 ATTATTTTTGACAAATAGGCCCCA 57.117 33.333 0.00 0.00 0.00 4.96
5080 5527 7.564793 AGAATTATTTTTGACAAATAGGCCCC 58.435 34.615 0.00 0.00 0.00 5.80
5171 5618 1.185618 ACGAAGCTAGGTGCCAGACA 61.186 55.000 0.00 0.00 44.23 3.41
5172 5619 0.737715 CACGAAGCTAGGTGCCAGAC 60.738 60.000 0.00 0.00 44.23 3.51
5173 5620 1.591703 CACGAAGCTAGGTGCCAGA 59.408 57.895 0.00 0.00 44.23 3.86
5174 5621 1.448540 CCACGAAGCTAGGTGCCAG 60.449 63.158 10.70 0.00 44.23 4.85
5175 5622 2.662596 CCACGAAGCTAGGTGCCA 59.337 61.111 10.70 0.00 44.23 4.92
5176 5623 2.820037 GCCACGAAGCTAGGTGCC 60.820 66.667 10.70 0.00 44.23 5.01
5177 5624 2.820037 GGCCACGAAGCTAGGTGC 60.820 66.667 10.70 0.00 43.29 5.01
5178 5625 2.125106 GGGCCACGAAGCTAGGTG 60.125 66.667 4.39 9.50 0.00 4.00
5179 5626 2.606519 TGGGCCACGAAGCTAGGT 60.607 61.111 0.00 0.00 0.00 3.08
5180 5627 2.187946 CTGGGCCACGAAGCTAGG 59.812 66.667 0.00 0.00 0.00 3.02
5181 5628 2.187946 CCTGGGCCACGAAGCTAG 59.812 66.667 0.00 0.00 0.00 3.42
5182 5629 4.096003 GCCTGGGCCACGAAGCTA 62.096 66.667 0.00 0.00 34.56 3.32
5211 5658 2.823829 GCTAAATGGGCCGTGCTCG 61.824 63.158 0.00 0.14 0.00 5.03
5212 5659 2.481471 GGCTAAATGGGCCGTGCTC 61.481 63.158 0.00 0.00 40.19 4.26
5213 5660 2.440247 GGCTAAATGGGCCGTGCT 60.440 61.111 0.00 0.00 40.19 4.40
5219 5666 1.257055 TGGCACTTGGCTAAATGGGC 61.257 55.000 4.25 0.00 44.01 5.36
5220 5667 1.488390 ATGGCACTTGGCTAAATGGG 58.512 50.000 4.25 0.00 44.01 4.00
5221 5668 3.615224 AAATGGCACTTGGCTAAATGG 57.385 42.857 4.25 0.00 44.01 3.16
5222 5669 5.111293 CCTAAAATGGCACTTGGCTAAATG 58.889 41.667 4.25 0.00 44.01 2.32
5223 5670 5.343307 CCTAAAATGGCACTTGGCTAAAT 57.657 39.130 4.25 0.00 44.01 1.40
5224 5671 4.799564 CCTAAAATGGCACTTGGCTAAA 57.200 40.909 4.25 0.00 44.01 1.85
5236 5683 3.099141 ACACTTCATGGGCCTAAAATGG 58.901 45.455 4.53 0.00 0.00 3.16
5237 5684 3.181497 CGACACTTCATGGGCCTAAAATG 60.181 47.826 4.53 0.00 0.00 2.32
5238 5685 3.016736 CGACACTTCATGGGCCTAAAAT 58.983 45.455 4.53 0.00 0.00 1.82
5239 5686 2.432444 CGACACTTCATGGGCCTAAAA 58.568 47.619 4.53 0.00 0.00 1.52
5240 5687 1.339631 CCGACACTTCATGGGCCTAAA 60.340 52.381 4.53 0.00 0.00 1.85
5241 5688 0.251916 CCGACACTTCATGGGCCTAA 59.748 55.000 4.53 0.00 0.00 2.69
5242 5689 1.622607 CCCGACACTTCATGGGCCTA 61.623 60.000 4.53 0.00 34.25 3.93
5243 5690 2.671070 CCGACACTTCATGGGCCT 59.329 61.111 4.53 0.00 0.00 5.19
5244 5691 2.438434 CCCGACACTTCATGGGCC 60.438 66.667 0.00 0.00 34.25 5.80
5246 5693 2.040544 GTGCCCGACACTTCATGGG 61.041 63.158 0.00 0.00 46.41 4.00
5247 5694 3.578456 GTGCCCGACACTTCATGG 58.422 61.111 0.00 0.00 46.41 3.66
5287 5734 4.039092 CAGACCTGGCCACCTGGG 62.039 72.222 13.74 10.61 45.34 4.45
5288 5735 3.252284 ACAGACCTGGCCACCTGG 61.252 66.667 22.01 16.41 46.30 4.45
5289 5736 2.033141 CACAGACCTGGCCACCTG 59.967 66.667 18.47 18.47 34.19 4.00
5290 5737 3.252284 CCACAGACCTGGCCACCT 61.252 66.667 0.00 0.00 34.19 4.00
5296 5743 2.124983 CATCGGCCACAGACCTGG 60.125 66.667 2.24 0.00 34.19 4.45
5297 5744 2.821366 GCATCGGCCACAGACCTG 60.821 66.667 2.24 0.00 0.00 4.00
5298 5745 3.320879 CTGCATCGGCCACAGACCT 62.321 63.158 2.24 0.00 40.13 3.85
5299 5746 2.821366 CTGCATCGGCCACAGACC 60.821 66.667 2.24 0.00 40.13 3.85
5300 5747 2.821366 CCTGCATCGGCCACAGAC 60.821 66.667 2.24 0.00 40.13 3.51
5301 5748 4.100084 CCCTGCATCGGCCACAGA 62.100 66.667 2.24 0.00 40.13 3.41
5317 5764 2.966516 CCTATACTTCTCAGTGTCCCCC 59.033 54.545 0.00 0.00 34.06 5.40
5318 5765 3.385111 CACCTATACTTCTCAGTGTCCCC 59.615 52.174 0.00 0.00 34.06 4.81
5319 5766 3.385111 CCACCTATACTTCTCAGTGTCCC 59.615 52.174 0.00 0.00 34.06 4.46
5320 5767 4.279145 TCCACCTATACTTCTCAGTGTCC 58.721 47.826 0.00 0.00 34.06 4.02
5321 5768 5.194432 TCTCCACCTATACTTCTCAGTGTC 58.806 45.833 0.00 0.00 34.06 3.67
5322 5769 5.194473 TCTCCACCTATACTTCTCAGTGT 57.806 43.478 0.00 0.00 34.06 3.55
5323 5770 5.596361 ACATCTCCACCTATACTTCTCAGTG 59.404 44.000 0.00 0.00 34.06 3.66
5324 5771 5.772004 ACATCTCCACCTATACTTCTCAGT 58.228 41.667 0.00 0.00 36.99 3.41
5325 5772 6.432783 CCTACATCTCCACCTATACTTCTCAG 59.567 46.154 0.00 0.00 0.00 3.35
5326 5773 6.126156 ACCTACATCTCCACCTATACTTCTCA 60.126 42.308 0.00 0.00 0.00 3.27
5327 5774 6.207810 CACCTACATCTCCACCTATACTTCTC 59.792 46.154 0.00 0.00 0.00 2.87
5328 5775 6.071984 CACCTACATCTCCACCTATACTTCT 58.928 44.000 0.00 0.00 0.00 2.85
5329 5776 6.069331 TCACCTACATCTCCACCTATACTTC 58.931 44.000 0.00 0.00 0.00 3.01
5330 5777 6.027025 TCACCTACATCTCCACCTATACTT 57.973 41.667 0.00 0.00 0.00 2.24
5331 5778 5.458362 CCTCACCTACATCTCCACCTATACT 60.458 48.000 0.00 0.00 0.00 2.12
5332 5779 4.767928 CCTCACCTACATCTCCACCTATAC 59.232 50.000 0.00 0.00 0.00 1.47
5333 5780 4.419200 ACCTCACCTACATCTCCACCTATA 59.581 45.833 0.00 0.00 0.00 1.31
5334 5781 3.207777 ACCTCACCTACATCTCCACCTAT 59.792 47.826 0.00 0.00 0.00 2.57
5335 5782 2.585900 ACCTCACCTACATCTCCACCTA 59.414 50.000 0.00 0.00 0.00 3.08
5336 5783 1.362932 ACCTCACCTACATCTCCACCT 59.637 52.381 0.00 0.00 0.00 4.00
5337 5784 1.482593 CACCTCACCTACATCTCCACC 59.517 57.143 0.00 0.00 0.00 4.61
5338 5785 2.180276 ACACCTCACCTACATCTCCAC 58.820 52.381 0.00 0.00 0.00 4.02
5339 5786 2.623418 ACACCTCACCTACATCTCCA 57.377 50.000 0.00 0.00 0.00 3.86
5340 5787 3.600388 CAAACACCTCACCTACATCTCC 58.400 50.000 0.00 0.00 0.00 3.71
5341 5788 3.260884 TCCAAACACCTCACCTACATCTC 59.739 47.826 0.00 0.00 0.00 2.75
5342 5789 3.248024 TCCAAACACCTCACCTACATCT 58.752 45.455 0.00 0.00 0.00 2.90
5343 5790 3.600388 CTCCAAACACCTCACCTACATC 58.400 50.000 0.00 0.00 0.00 3.06
5344 5791 2.305927 CCTCCAAACACCTCACCTACAT 59.694 50.000 0.00 0.00 0.00 2.29
5345 5792 1.697432 CCTCCAAACACCTCACCTACA 59.303 52.381 0.00 0.00 0.00 2.74
5346 5793 1.975680 TCCTCCAAACACCTCACCTAC 59.024 52.381 0.00 0.00 0.00 3.18
5347 5794 2.257207 CTCCTCCAAACACCTCACCTA 58.743 52.381 0.00 0.00 0.00 3.08
5348 5795 1.059913 CTCCTCCAAACACCTCACCT 58.940 55.000 0.00 0.00 0.00 4.00
5349 5796 0.765510 ACTCCTCCAAACACCTCACC 59.234 55.000 0.00 0.00 0.00 4.02
5350 5797 2.222027 CAACTCCTCCAAACACCTCAC 58.778 52.381 0.00 0.00 0.00 3.51
5351 5798 1.142870 CCAACTCCTCCAAACACCTCA 59.857 52.381 0.00 0.00 0.00 3.86
5352 5799 1.545651 CCCAACTCCTCCAAACACCTC 60.546 57.143 0.00 0.00 0.00 3.85
5353 5800 0.478507 CCCAACTCCTCCAAACACCT 59.521 55.000 0.00 0.00 0.00 4.00
5354 5801 0.539669 CCCCAACTCCTCCAAACACC 60.540 60.000 0.00 0.00 0.00 4.16
5355 5802 0.185175 ACCCCAACTCCTCCAAACAC 59.815 55.000 0.00 0.00 0.00 3.32
5356 5803 0.476771 GACCCCAACTCCTCCAAACA 59.523 55.000 0.00 0.00 0.00 2.83
5357 5804 0.476771 TGACCCCAACTCCTCCAAAC 59.523 55.000 0.00 0.00 0.00 2.93
5358 5805 1.227249 TTGACCCCAACTCCTCCAAA 58.773 50.000 0.00 0.00 0.00 3.28
5359 5806 1.227249 TTTGACCCCAACTCCTCCAA 58.773 50.000 0.00 0.00 30.88 3.53
5360 5807 1.227249 TTTTGACCCCAACTCCTCCA 58.773 50.000 0.00 0.00 30.88 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.