Multiple sequence alignment - TraesCS7A01G181800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G181800 chr7A 100.000 2789 0 0 1 2789 136341891 136344679 0.000000e+00 5151.0
1 TraesCS7A01G181800 chr7D 88.689 1114 86 21 851 1949 136583068 136584156 0.000000e+00 1323.0
2 TraesCS7A01G181800 chr7D 97.674 43 1 0 780 822 136582977 136583019 1.070000e-09 75.0
3 TraesCS7A01G181800 chr7B 91.826 942 52 9 877 1811 100023775 100024698 0.000000e+00 1290.0
4 TraesCS7A01G181800 chr7B 91.165 781 33 9 2032 2789 100025092 100025859 0.000000e+00 1027.0
5 TraesCS7A01G181800 chr7B 92.537 201 12 2 1801 2001 100024742 100024939 4.550000e-73 285.0
6 TraesCS7A01G181800 chr4D 89.769 303 29 2 1 301 22021520 22021822 1.210000e-103 387.0
7 TraesCS7A01G181800 chr5A 90.000 300 26 4 1 299 417251270 417251566 4.360000e-103 385.0
8 TraesCS7A01G181800 chr5A 89.073 302 31 2 1 301 706823551 706823851 9.430000e-100 374.0
9 TraesCS7A01G181800 chr5A 81.217 378 66 5 297 670 199223044 199223420 1.620000e-77 300.0
10 TraesCS7A01G181800 chr2A 89.145 304 32 1 1 303 752011159 752011462 7.290000e-101 377.0
11 TraesCS7A01G181800 chr2A 89.404 302 26 4 1 297 526307184 526306884 2.620000e-100 375.0
12 TraesCS7A01G181800 chr6A 89.298 299 30 2 1 299 447119986 447119690 9.430000e-100 374.0
13 TraesCS7A01G181800 chr6A 97.059 34 1 0 1125 1158 497479212 497479179 1.080000e-04 58.4
14 TraesCS7A01G181800 chr1A 89.298 299 30 2 1 297 486575514 486575812 9.430000e-100 374.0
15 TraesCS7A01G181800 chr3D 89.073 302 30 3 1 299 173703775 173703474 3.390000e-99 372.0
16 TraesCS7A01G181800 chr3A 89.037 301 31 2 1 300 730176297 730176596 3.390000e-99 372.0
17 TraesCS7A01G181800 chr5D 79.612 309 58 4 416 721 102443892 102443586 1.680000e-52 217.0
18 TraesCS7A01G181800 chr6D 94.595 37 2 0 1122 1158 346452278 346452314 1.080000e-04 58.4
19 TraesCS7A01G181800 chr6B 97.059 34 1 0 1125 1158 534955225 534955192 1.080000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G181800 chr7A 136341891 136344679 2788 False 5151.000000 5151 100.000000 1 2789 1 chr7A.!!$F1 2788
1 TraesCS7A01G181800 chr7D 136582977 136584156 1179 False 699.000000 1323 93.181500 780 1949 2 chr7D.!!$F1 1169
2 TraesCS7A01G181800 chr7B 100023775 100025859 2084 False 867.333333 1290 91.842667 877 2789 3 chr7B.!!$F1 1912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
338 339 0.031449 GCCATCGTCTAGAGCCAGTC 59.969 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1819 1868 0.037232 GTGCCCAGTGACCAGTAGTC 60.037 60.0 0.0 0.0 46.51 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.749245 CTACTCGGTGTTCAGCAAATTT 57.251 40.909 3.05 0.00 0.00 1.82
22 23 3.626028 ACTCGGTGTTCAGCAAATTTC 57.374 42.857 3.05 0.00 0.00 2.17
23 24 3.214328 ACTCGGTGTTCAGCAAATTTCT 58.786 40.909 3.05 0.00 0.00 2.52
24 25 3.632145 ACTCGGTGTTCAGCAAATTTCTT 59.368 39.130 3.05 0.00 0.00 2.52
25 26 4.097892 ACTCGGTGTTCAGCAAATTTCTTT 59.902 37.500 3.05 0.00 0.00 2.52
26 27 5.004922 TCGGTGTTCAGCAAATTTCTTTT 57.995 34.783 3.05 0.00 0.00 2.27
27 28 6.137794 TCGGTGTTCAGCAAATTTCTTTTA 57.862 33.333 3.05 0.00 0.00 1.52
28 29 6.205784 TCGGTGTTCAGCAAATTTCTTTTAG 58.794 36.000 3.05 0.00 0.00 1.85
29 30 6.038825 TCGGTGTTCAGCAAATTTCTTTTAGA 59.961 34.615 3.05 0.00 0.00 2.10
30 31 6.863126 CGGTGTTCAGCAAATTTCTTTTAGAT 59.137 34.615 3.05 0.00 0.00 1.98
31 32 7.382218 CGGTGTTCAGCAAATTTCTTTTAGATT 59.618 33.333 3.05 0.00 0.00 2.40
32 33 9.691362 GGTGTTCAGCAAATTTCTTTTAGATTA 57.309 29.630 0.00 0.00 0.00 1.75
71 72 9.601971 TTTGCTATATAATTAAAATCGGCGAAC 57.398 29.630 15.93 0.00 0.00 3.95
72 73 8.542497 TGCTATATAATTAAAATCGGCGAACT 57.458 30.769 15.93 0.23 0.00 3.01
73 74 8.995220 TGCTATATAATTAAAATCGGCGAACTT 58.005 29.630 15.93 12.84 0.00 2.66
74 75 9.821662 GCTATATAATTAAAATCGGCGAACTTT 57.178 29.630 15.93 18.43 0.00 2.66
77 78 7.964545 ATAATTAAAATCGGCGAACTTTGTC 57.035 32.000 22.88 0.00 0.00 3.18
78 79 2.699251 AAAATCGGCGAACTTTGTCC 57.301 45.000 15.93 0.00 0.00 4.02
79 80 1.600023 AAATCGGCGAACTTTGTCCA 58.400 45.000 15.93 0.00 0.00 4.02
80 81 1.600023 AATCGGCGAACTTTGTCCAA 58.400 45.000 15.93 0.00 0.00 3.53
81 82 1.600023 ATCGGCGAACTTTGTCCAAA 58.400 45.000 15.93 0.00 0.00 3.28
82 83 1.600023 TCGGCGAACTTTGTCCAAAT 58.400 45.000 7.35 0.00 0.00 2.32
83 84 2.768698 TCGGCGAACTTTGTCCAAATA 58.231 42.857 7.35 0.00 0.00 1.40
84 85 3.340034 TCGGCGAACTTTGTCCAAATAT 58.660 40.909 7.35 0.00 0.00 1.28
85 86 4.505808 TCGGCGAACTTTGTCCAAATATA 58.494 39.130 7.35 0.00 0.00 0.86
86 87 5.120399 TCGGCGAACTTTGTCCAAATATAT 58.880 37.500 7.35 0.00 0.00 0.86
87 88 5.007234 TCGGCGAACTTTGTCCAAATATATG 59.993 40.000 7.35 0.00 0.00 1.78
88 89 4.976116 GGCGAACTTTGTCCAAATATATGC 59.024 41.667 0.00 0.00 0.00 3.14
89 90 5.221048 GGCGAACTTTGTCCAAATATATGCT 60.221 40.000 0.00 0.00 0.00 3.79
90 91 5.909610 GCGAACTTTGTCCAAATATATGCTC 59.090 40.000 0.00 0.00 0.00 4.26
91 92 6.458206 GCGAACTTTGTCCAAATATATGCTCA 60.458 38.462 0.00 0.00 0.00 4.26
92 93 7.471721 CGAACTTTGTCCAAATATATGCTCAA 58.528 34.615 0.00 0.00 0.00 3.02
93 94 7.641411 CGAACTTTGTCCAAATATATGCTCAAG 59.359 37.037 0.00 0.00 0.00 3.02
94 95 7.944729 ACTTTGTCCAAATATATGCTCAAGT 57.055 32.000 0.00 0.00 0.00 3.16
95 96 8.353423 ACTTTGTCCAAATATATGCTCAAGTT 57.647 30.769 0.00 0.00 0.00 2.66
96 97 8.246180 ACTTTGTCCAAATATATGCTCAAGTTG 58.754 33.333 0.00 0.00 0.00 3.16
97 98 6.698008 TGTCCAAATATATGCTCAAGTTGG 57.302 37.500 2.34 4.37 36.25 3.77
98 99 5.067674 TGTCCAAATATATGCTCAAGTTGGC 59.932 40.000 2.34 6.22 35.16 4.52
99 100 4.584325 TCCAAATATATGCTCAAGTTGGCC 59.416 41.667 2.34 0.00 35.16 5.36
100 101 4.539870 CAAATATATGCTCAAGTTGGCCG 58.460 43.478 2.34 0.00 0.00 6.13
101 102 3.769739 ATATATGCTCAAGTTGGCCGA 57.230 42.857 2.34 0.00 0.00 5.54
102 103 2.418368 ATATGCTCAAGTTGGCCGAA 57.582 45.000 2.34 0.00 0.00 4.30
103 104 2.192664 TATGCTCAAGTTGGCCGAAA 57.807 45.000 2.34 0.00 0.00 3.46
104 105 1.549203 ATGCTCAAGTTGGCCGAAAT 58.451 45.000 2.34 0.00 0.00 2.17
105 106 1.327303 TGCTCAAGTTGGCCGAAATT 58.673 45.000 2.34 0.00 0.00 1.82
106 107 1.686052 TGCTCAAGTTGGCCGAAATTT 59.314 42.857 2.34 0.00 0.00 1.82
107 108 2.061028 GCTCAAGTTGGCCGAAATTTG 58.939 47.619 2.34 0.00 0.00 2.32
108 109 2.545742 GCTCAAGTTGGCCGAAATTTGT 60.546 45.455 2.34 0.00 30.99 2.83
109 110 3.308530 CTCAAGTTGGCCGAAATTTGTC 58.691 45.455 2.34 0.00 30.99 3.18
110 111 2.050691 CAAGTTGGCCGAAATTTGTCG 58.949 47.619 0.00 0.00 40.77 4.35
111 112 1.314730 AGTTGGCCGAAATTTGTCGT 58.685 45.000 0.00 0.00 39.43 4.34
112 113 1.001815 AGTTGGCCGAAATTTGTCGTG 60.002 47.619 0.00 0.00 39.43 4.35
113 114 1.025812 TTGGCCGAAATTTGTCGTGT 58.974 45.000 0.00 0.00 39.43 4.49
114 115 1.025812 TGGCCGAAATTTGTCGTGTT 58.974 45.000 0.00 0.00 39.43 3.32
115 116 1.405821 TGGCCGAAATTTGTCGTGTTT 59.594 42.857 0.00 0.00 39.43 2.83
116 117 2.617308 TGGCCGAAATTTGTCGTGTTTA 59.383 40.909 0.00 0.00 39.43 2.01
117 118 3.231160 GGCCGAAATTTGTCGTGTTTAG 58.769 45.455 0.00 0.00 39.43 1.85
118 119 2.655001 GCCGAAATTTGTCGTGTTTAGC 59.345 45.455 0.00 0.00 39.43 3.09
119 120 3.231160 CCGAAATTTGTCGTGTTTAGCC 58.769 45.455 0.00 0.00 39.43 3.93
120 121 2.900046 CGAAATTTGTCGTGTTTAGCCG 59.100 45.455 0.00 0.00 36.26 5.52
121 122 3.363182 CGAAATTTGTCGTGTTTAGCCGA 60.363 43.478 0.00 0.00 36.26 5.54
122 123 4.529446 GAAATTTGTCGTGTTTAGCCGAA 58.471 39.130 0.00 0.00 34.47 4.30
123 124 3.531262 ATTTGTCGTGTTTAGCCGAAC 57.469 42.857 0.00 0.00 34.47 3.95
124 125 2.228138 TTGTCGTGTTTAGCCGAACT 57.772 45.000 2.06 0.00 34.47 3.01
125 126 2.228138 TGTCGTGTTTAGCCGAACTT 57.772 45.000 2.06 0.00 34.47 2.66
126 127 2.129607 TGTCGTGTTTAGCCGAACTTC 58.870 47.619 2.06 0.00 34.47 3.01
127 128 1.123756 GTCGTGTTTAGCCGAACTTCG 59.876 52.381 4.07 4.07 40.07 3.79
128 129 0.179258 CGTGTTTAGCCGAACTTCGC 60.179 55.000 5.61 2.03 38.82 4.70
129 130 1.145803 GTGTTTAGCCGAACTTCGCT 58.854 50.000 5.61 9.02 38.82 4.93
130 131 1.136336 GTGTTTAGCCGAACTTCGCTG 60.136 52.381 5.61 0.00 38.82 5.18
131 132 1.269883 TGTTTAGCCGAACTTCGCTGA 60.270 47.619 5.61 1.58 38.82 4.26
132 133 1.796459 GTTTAGCCGAACTTCGCTGAA 59.204 47.619 5.61 7.08 38.82 3.02
133 134 1.425412 TTAGCCGAACTTCGCTGAAC 58.575 50.000 5.61 0.00 38.82 3.18
134 135 0.601558 TAGCCGAACTTCGCTGAACT 59.398 50.000 5.61 1.00 38.82 3.01
135 136 0.946221 AGCCGAACTTCGCTGAACTG 60.946 55.000 5.61 0.00 38.82 3.16
136 137 1.222115 GCCGAACTTCGCTGAACTGT 61.222 55.000 5.61 0.00 38.82 3.55
137 138 0.508641 CCGAACTTCGCTGAACTGTG 59.491 55.000 5.61 0.00 38.82 3.66
138 139 0.111089 CGAACTTCGCTGAACTGTGC 60.111 55.000 0.00 0.00 31.14 4.57
139 140 0.235926 GAACTTCGCTGAACTGTGCC 59.764 55.000 0.00 0.00 0.00 5.01
140 141 1.498865 AACTTCGCTGAACTGTGCCG 61.499 55.000 0.00 0.00 0.00 5.69
141 142 1.664649 CTTCGCTGAACTGTGCCGA 60.665 57.895 0.00 0.00 0.00 5.54
142 143 1.221466 CTTCGCTGAACTGTGCCGAA 61.221 55.000 0.95 0.95 0.00 4.30
143 144 0.812014 TTCGCTGAACTGTGCCGAAA 60.812 50.000 0.00 0.00 0.00 3.46
144 145 0.602638 TCGCTGAACTGTGCCGAAAT 60.603 50.000 0.00 0.00 0.00 2.17
145 146 0.238289 CGCTGAACTGTGCCGAAATT 59.762 50.000 0.00 0.00 0.00 1.82
146 147 1.334960 CGCTGAACTGTGCCGAAATTT 60.335 47.619 0.00 0.00 0.00 1.82
147 148 2.053627 GCTGAACTGTGCCGAAATTTG 58.946 47.619 0.00 0.00 0.00 2.32
148 149 2.053627 CTGAACTGTGCCGAAATTTGC 58.946 47.619 0.00 0.00 0.00 3.68
149 150 1.680735 TGAACTGTGCCGAAATTTGCT 59.319 42.857 0.00 0.00 0.00 3.91
150 151 2.881513 TGAACTGTGCCGAAATTTGCTA 59.118 40.909 0.00 0.00 0.00 3.49
151 152 3.505680 TGAACTGTGCCGAAATTTGCTAT 59.494 39.130 0.00 0.00 0.00 2.97
152 153 4.697828 TGAACTGTGCCGAAATTTGCTATA 59.302 37.500 0.00 0.00 0.00 1.31
153 154 5.182190 TGAACTGTGCCGAAATTTGCTATAA 59.818 36.000 0.00 0.00 0.00 0.98
154 155 5.835113 ACTGTGCCGAAATTTGCTATAAT 57.165 34.783 0.00 0.00 0.00 1.28
155 156 6.207691 ACTGTGCCGAAATTTGCTATAATT 57.792 33.333 0.00 0.00 0.00 1.40
156 157 6.630071 ACTGTGCCGAAATTTGCTATAATTT 58.370 32.000 0.00 0.00 39.68 1.82
157 158 7.096551 ACTGTGCCGAAATTTGCTATAATTTT 58.903 30.769 0.00 0.00 37.72 1.82
158 159 7.602265 ACTGTGCCGAAATTTGCTATAATTTTT 59.398 29.630 0.00 0.00 37.72 1.94
205 206 4.131088 GGGCCGACGACTGGAGAC 62.131 72.222 0.00 0.00 0.00 3.36
206 207 4.131088 GGCCGACGACTGGAGACC 62.131 72.222 0.00 0.00 0.00 3.85
207 208 3.371063 GCCGACGACTGGAGACCA 61.371 66.667 0.00 0.00 0.00 4.02
208 209 2.927580 GCCGACGACTGGAGACCAA 61.928 63.158 0.00 0.00 30.80 3.67
209 210 1.080705 CCGACGACTGGAGACCAAC 60.081 63.158 0.00 0.00 30.80 3.77
210 211 1.524863 CCGACGACTGGAGACCAACT 61.525 60.000 0.00 0.00 30.80 3.16
211 212 0.109689 CGACGACTGGAGACCAACTC 60.110 60.000 0.00 0.00 44.24 3.01
212 213 0.109689 GACGACTGGAGACCAACTCG 60.110 60.000 12.79 12.79 45.76 4.18
213 214 1.444553 CGACTGGAGACCAACTCGC 60.445 63.158 0.00 0.00 45.76 5.03
214 215 1.079750 GACTGGAGACCAACTCGCC 60.080 63.158 0.00 0.00 45.76 5.54
215 216 2.266055 CTGGAGACCAACTCGCCC 59.734 66.667 0.00 0.00 45.76 6.13
216 217 3.316573 CTGGAGACCAACTCGCCCC 62.317 68.421 0.00 0.00 45.76 5.80
217 218 4.097361 GGAGACCAACTCGCCCCC 62.097 72.222 0.00 0.00 45.76 5.40
218 219 3.319198 GAGACCAACTCGCCCCCA 61.319 66.667 0.00 0.00 35.84 4.96
219 220 2.852075 AGACCAACTCGCCCCCAA 60.852 61.111 0.00 0.00 0.00 4.12
220 221 2.114411 GACCAACTCGCCCCCAAA 59.886 61.111 0.00 0.00 0.00 3.28
221 222 2.203437 ACCAACTCGCCCCCAAAC 60.203 61.111 0.00 0.00 0.00 2.93
222 223 2.115266 CCAACTCGCCCCCAAACT 59.885 61.111 0.00 0.00 0.00 2.66
223 224 1.971695 CCAACTCGCCCCCAAACTC 60.972 63.158 0.00 0.00 0.00 3.01
224 225 1.228124 CAACTCGCCCCCAAACTCA 60.228 57.895 0.00 0.00 0.00 3.41
225 226 0.609131 CAACTCGCCCCCAAACTCAT 60.609 55.000 0.00 0.00 0.00 2.90
226 227 0.112412 AACTCGCCCCCAAACTCATT 59.888 50.000 0.00 0.00 0.00 2.57
227 228 0.112412 ACTCGCCCCCAAACTCATTT 59.888 50.000 0.00 0.00 0.00 2.32
228 229 1.256812 CTCGCCCCCAAACTCATTTT 58.743 50.000 0.00 0.00 0.00 1.82
229 230 1.618343 CTCGCCCCCAAACTCATTTTT 59.382 47.619 0.00 0.00 0.00 1.94
244 245 2.917172 TTTTTACGTCGGCTCACCC 58.083 52.632 0.00 0.00 0.00 4.61
245 246 0.393820 TTTTTACGTCGGCTCACCCT 59.606 50.000 0.00 0.00 0.00 4.34
246 247 0.037975 TTTTACGTCGGCTCACCCTC 60.038 55.000 0.00 0.00 0.00 4.30
247 248 1.180456 TTTACGTCGGCTCACCCTCA 61.180 55.000 0.00 0.00 0.00 3.86
248 249 1.592400 TTACGTCGGCTCACCCTCAG 61.592 60.000 0.00 0.00 0.00 3.35
249 250 2.473891 TACGTCGGCTCACCCTCAGA 62.474 60.000 0.00 0.00 0.00 3.27
250 251 2.574399 GTCGGCTCACCCTCAGAC 59.426 66.667 0.00 0.00 0.00 3.51
251 252 3.062466 TCGGCTCACCCTCAGACG 61.062 66.667 0.00 0.00 44.35 4.18
252 253 3.062466 CGGCTCACCCTCAGACGA 61.062 66.667 0.00 0.00 46.01 4.20
253 254 2.574399 GGCTCACCCTCAGACGAC 59.426 66.667 0.00 0.00 0.00 4.34
254 255 2.179517 GCTCACCCTCAGACGACG 59.820 66.667 0.00 0.00 0.00 5.12
255 256 2.333417 GCTCACCCTCAGACGACGA 61.333 63.158 0.00 0.00 0.00 4.20
256 257 1.658686 GCTCACCCTCAGACGACGAT 61.659 60.000 0.00 0.00 0.00 3.73
257 258 0.811915 CTCACCCTCAGACGACGATT 59.188 55.000 0.00 0.00 0.00 3.34
258 259 1.202582 CTCACCCTCAGACGACGATTT 59.797 52.381 0.00 0.00 0.00 2.17
259 260 1.616865 TCACCCTCAGACGACGATTTT 59.383 47.619 0.00 0.00 0.00 1.82
260 261 2.821378 TCACCCTCAGACGACGATTTTA 59.179 45.455 0.00 0.00 0.00 1.52
261 262 3.119602 TCACCCTCAGACGACGATTTTAG 60.120 47.826 0.00 0.00 0.00 1.85
262 263 2.165845 ACCCTCAGACGACGATTTTAGG 59.834 50.000 0.00 1.53 0.00 2.69
263 264 2.194271 CCTCAGACGACGATTTTAGGC 58.806 52.381 0.00 0.00 0.00 3.93
265 266 0.297820 CAGACGACGATTTTAGGCGC 59.702 55.000 0.00 0.00 45.40 6.53
266 267 0.804933 AGACGACGATTTTAGGCGCC 60.805 55.000 21.89 21.89 45.40 6.53
267 268 1.759293 GACGACGATTTTAGGCGCCC 61.759 60.000 26.15 5.24 45.40 6.13
268 269 2.531376 CGACGATTTTAGGCGCCCC 61.531 63.158 26.15 0.00 31.51 5.80
269 270 2.124445 ACGATTTTAGGCGCCCCC 60.124 61.111 26.15 5.00 0.00 5.40
271 272 2.186826 CGATTTTAGGCGCCCCCTG 61.187 63.158 26.15 2.62 45.91 4.45
272 273 1.226262 GATTTTAGGCGCCCCCTGA 59.774 57.895 26.15 6.15 45.91 3.86
273 274 0.395173 GATTTTAGGCGCCCCCTGAA 60.395 55.000 26.15 11.81 45.91 3.02
274 275 0.395724 ATTTTAGGCGCCCCCTGAAG 60.396 55.000 26.15 0.00 45.91 3.02
275 276 2.493273 TTTTAGGCGCCCCCTGAAGG 62.493 60.000 26.15 0.00 45.91 3.46
293 294 2.486966 GCCAACGGCTGAAGATGC 59.513 61.111 0.00 0.00 46.69 3.91
294 295 2.042831 GCCAACGGCTGAAGATGCT 61.043 57.895 0.00 0.00 46.69 3.79
295 296 1.986575 GCCAACGGCTGAAGATGCTC 61.987 60.000 0.00 0.00 46.69 4.26
296 297 0.392193 CCAACGGCTGAAGATGCTCT 60.392 55.000 0.00 0.00 0.00 4.09
297 298 1.446907 CAACGGCTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
298 299 2.621338 CAACGGCTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
299 300 2.301577 ACGGCTGAAGATGCTCTTAC 57.698 50.000 0.00 0.00 36.73 2.34
300 301 1.550524 ACGGCTGAAGATGCTCTTACA 59.449 47.619 0.00 0.00 36.73 2.41
301 302 2.169352 ACGGCTGAAGATGCTCTTACAT 59.831 45.455 0.00 0.00 36.73 2.29
302 303 2.543012 CGGCTGAAGATGCTCTTACATG 59.457 50.000 0.00 0.00 36.73 3.21
303 304 2.877168 GGCTGAAGATGCTCTTACATGG 59.123 50.000 0.00 0.00 36.73 3.66
304 305 3.432749 GGCTGAAGATGCTCTTACATGGA 60.433 47.826 0.00 0.00 36.73 3.41
305 306 4.387598 GCTGAAGATGCTCTTACATGGAT 58.612 43.478 0.00 0.00 36.73 3.41
306 307 4.213694 GCTGAAGATGCTCTTACATGGATG 59.786 45.833 0.00 0.00 36.73 3.51
307 308 4.132336 TGAAGATGCTCTTACATGGATGC 58.868 43.478 0.00 0.00 36.73 3.91
308 309 3.851458 AGATGCTCTTACATGGATGCA 57.149 42.857 0.00 0.04 34.88 3.96
309 310 3.741249 AGATGCTCTTACATGGATGCAG 58.259 45.455 0.00 0.00 33.87 4.41
310 311 1.671979 TGCTCTTACATGGATGCAGC 58.328 50.000 0.00 0.00 0.00 5.25
311 312 0.585357 GCTCTTACATGGATGCAGCG 59.415 55.000 0.00 0.00 0.00 5.18
312 313 0.585357 CTCTTACATGGATGCAGCGC 59.415 55.000 0.00 0.00 0.00 5.92
313 314 0.815213 TCTTACATGGATGCAGCGCC 60.815 55.000 2.29 0.00 0.00 6.53
314 315 1.789078 CTTACATGGATGCAGCGCCC 61.789 60.000 2.29 0.00 0.00 6.13
315 316 2.269520 TTACATGGATGCAGCGCCCT 62.270 55.000 2.29 0.00 0.00 5.19
316 317 2.946172 TACATGGATGCAGCGCCCTG 62.946 60.000 2.29 0.00 42.13 4.45
328 329 4.479993 GCCCTGCTGCCATCGTCT 62.480 66.667 0.00 0.00 0.00 4.18
329 330 3.094062 GCCCTGCTGCCATCGTCTA 62.094 63.158 0.00 0.00 0.00 2.59
330 331 1.068753 CCCTGCTGCCATCGTCTAG 59.931 63.158 0.00 0.00 0.00 2.43
331 332 1.395045 CCCTGCTGCCATCGTCTAGA 61.395 60.000 0.00 0.00 0.00 2.43
332 333 0.031857 CCTGCTGCCATCGTCTAGAG 59.968 60.000 0.00 0.00 0.00 2.43
333 334 0.597118 CTGCTGCCATCGTCTAGAGC 60.597 60.000 0.00 0.00 0.00 4.09
334 335 1.300542 GCTGCCATCGTCTAGAGCC 60.301 63.158 0.00 0.00 0.00 4.70
335 336 2.021068 GCTGCCATCGTCTAGAGCCA 62.021 60.000 0.00 0.00 0.00 4.75
336 337 0.031857 CTGCCATCGTCTAGAGCCAG 59.968 60.000 0.00 0.00 0.00 4.85
337 338 0.684479 TGCCATCGTCTAGAGCCAGT 60.684 55.000 0.00 0.00 0.00 4.00
338 339 0.031449 GCCATCGTCTAGAGCCAGTC 59.969 60.000 0.00 0.00 0.00 3.51
339 340 1.393603 CCATCGTCTAGAGCCAGTCA 58.606 55.000 0.00 0.00 0.00 3.41
340 341 1.959985 CCATCGTCTAGAGCCAGTCAT 59.040 52.381 0.00 0.00 0.00 3.06
341 342 2.288091 CCATCGTCTAGAGCCAGTCATG 60.288 54.545 0.00 0.00 0.00 3.07
370 371 4.767255 CTGCCGGGTCAGCCAGAC 62.767 72.222 2.18 0.00 46.83 3.51
412 413 4.659874 CGTGGCACGCCGTTGTTC 62.660 66.667 28.30 0.00 39.42 3.18
413 414 4.659874 GTGGCACGCCGTTGTTCG 62.660 66.667 0.00 0.00 39.42 3.95
418 419 2.202770 ACGCCGTTGTTCGTGTCA 60.203 55.556 0.00 0.00 37.55 3.58
419 420 2.244382 CGCCGTTGTTCGTGTCAC 59.756 61.111 0.00 0.00 37.94 3.67
420 421 2.244382 GCCGTTGTTCGTGTCACG 59.756 61.111 19.38 19.38 44.19 4.35
421 422 2.925352 CCGTTGTTCGTGTCACGG 59.075 61.111 24.33 7.72 42.81 4.94
422 423 1.589461 CCGTTGTTCGTGTCACGGA 60.589 57.895 24.33 14.48 42.81 4.69
423 424 1.545614 CCGTTGTTCGTGTCACGGAG 61.546 60.000 24.33 4.65 42.81 4.63
424 425 0.868602 CGTTGTTCGTGTCACGGAGT 60.869 55.000 24.33 0.00 42.81 3.85
440 441 3.642755 GTGGCTGACACCGACTTG 58.357 61.111 1.02 0.00 44.49 3.16
441 442 2.280797 TGGCTGACACCGACTTGC 60.281 61.111 0.00 0.00 0.00 4.01
442 443 2.031163 GGCTGACACCGACTTGCT 59.969 61.111 0.00 0.00 0.00 3.91
443 444 1.292223 GGCTGACACCGACTTGCTA 59.708 57.895 0.00 0.00 0.00 3.49
444 445 1.014564 GGCTGACACCGACTTGCTAC 61.015 60.000 0.00 0.00 0.00 3.58
445 446 0.319555 GCTGACACCGACTTGCTACA 60.320 55.000 0.00 0.00 0.00 2.74
446 447 1.702886 CTGACACCGACTTGCTACAG 58.297 55.000 0.00 0.00 0.00 2.74
447 448 0.317160 TGACACCGACTTGCTACAGG 59.683 55.000 0.00 0.00 0.00 4.00
448 449 0.317479 GACACCGACTTGCTACAGGT 59.683 55.000 0.00 0.00 35.24 4.00
449 450 0.756903 ACACCGACTTGCTACAGGTT 59.243 50.000 0.00 0.00 32.04 3.50
450 451 1.270147 ACACCGACTTGCTACAGGTTC 60.270 52.381 0.00 0.00 32.04 3.62
451 452 0.038526 ACCGACTTGCTACAGGTTCG 60.039 55.000 0.00 0.00 0.00 3.95
452 453 1.352156 CCGACTTGCTACAGGTTCGC 61.352 60.000 0.00 0.00 0.00 4.70
453 454 0.388649 CGACTTGCTACAGGTTCGCT 60.389 55.000 0.00 0.00 0.00 4.93
454 455 1.351153 GACTTGCTACAGGTTCGCTC 58.649 55.000 0.00 0.00 0.00 5.03
455 456 0.037232 ACTTGCTACAGGTTCGCTCC 60.037 55.000 0.00 0.00 0.00 4.70
456 457 1.078759 CTTGCTACAGGTTCGCTCCG 61.079 60.000 0.00 0.00 0.00 4.63
457 458 2.202756 GCTACAGGTTCGCTCCGG 60.203 66.667 0.00 0.00 0.00 5.14
458 459 2.494918 CTACAGGTTCGCTCCGGG 59.505 66.667 0.00 0.00 0.00 5.73
459 460 2.283388 TACAGGTTCGCTCCGGGT 60.283 61.111 0.00 0.00 0.00 5.28
460 461 2.280823 CTACAGGTTCGCTCCGGGTC 62.281 65.000 0.00 0.00 0.00 4.46
461 462 4.796231 CAGGTTCGCTCCGGGTCG 62.796 72.222 0.00 5.68 0.00 4.79
485 486 4.760047 CCGACTCCAAGGGCGTGG 62.760 72.222 0.00 0.00 40.33 4.94
504 505 2.589494 CCTCTGAGGCACTGTAGCT 58.411 57.895 11.42 0.00 41.55 3.32
505 506 1.769026 CCTCTGAGGCACTGTAGCTA 58.231 55.000 11.42 0.00 41.55 3.32
506 507 1.407258 CCTCTGAGGCACTGTAGCTAC 59.593 57.143 17.30 17.30 41.55 3.58
507 508 1.064803 CTCTGAGGCACTGTAGCTACG 59.935 57.143 18.74 15.12 41.55 3.51
508 509 0.526524 CTGAGGCACTGTAGCTACGC 60.527 60.000 18.74 15.26 41.55 4.42
509 510 1.227002 GAGGCACTGTAGCTACGCC 60.227 63.158 25.44 25.44 41.55 5.68
510 511 2.893398 GGCACTGTAGCTACGCCT 59.107 61.111 25.48 7.73 39.73 5.52
511 512 1.519455 GGCACTGTAGCTACGCCTG 60.519 63.158 25.48 17.84 39.73 4.85
512 513 2.167861 GCACTGTAGCTACGCCTGC 61.168 63.158 18.74 18.79 0.00 4.85
513 514 1.519455 CACTGTAGCTACGCCTGCC 60.519 63.158 18.74 0.00 0.00 4.85
514 515 1.682684 ACTGTAGCTACGCCTGCCT 60.683 57.895 18.74 0.00 0.00 4.75
515 516 1.258445 ACTGTAGCTACGCCTGCCTT 61.258 55.000 18.74 0.00 0.00 4.35
516 517 0.807667 CTGTAGCTACGCCTGCCTTG 60.808 60.000 18.74 0.00 0.00 3.61
517 518 1.521681 GTAGCTACGCCTGCCTTGG 60.522 63.158 8.40 0.00 0.00 3.61
548 549 3.050619 CAGAAACACTGTAGTCACGTCC 58.949 50.000 0.00 0.00 41.30 4.79
549 550 2.049228 GAAACACTGTAGTCACGTCCG 58.951 52.381 0.00 0.00 0.00 4.79
550 551 0.318445 AACACTGTAGTCACGTCCGC 60.318 55.000 0.00 0.00 0.00 5.54
551 552 1.170919 ACACTGTAGTCACGTCCGCT 61.171 55.000 0.00 0.00 0.00 5.52
552 553 0.454620 CACTGTAGTCACGTCCGCTC 60.455 60.000 0.00 0.00 0.00 5.03
553 554 1.226046 CTGTAGTCACGTCCGCTCG 60.226 63.158 0.00 0.00 0.00 5.03
554 555 1.909141 CTGTAGTCACGTCCGCTCGT 61.909 60.000 0.00 0.00 45.10 4.18
555 556 1.225963 GTAGTCACGTCCGCTCGTC 60.226 63.158 0.47 0.00 42.27 4.20
556 557 2.733671 TAGTCACGTCCGCTCGTCG 61.734 63.158 0.47 0.00 42.27 5.12
562 563 4.838486 GTCCGCTCGTCGCAGGAG 62.838 72.222 10.91 2.68 40.31 3.69
580 581 2.427753 GGGGGCTGTCCGATCATC 59.572 66.667 0.00 0.00 36.01 2.92
581 582 2.143419 GGGGGCTGTCCGATCATCT 61.143 63.158 0.00 0.00 36.01 2.90
582 583 1.070445 GGGGCTGTCCGATCATCTG 59.930 63.158 0.00 0.00 36.01 2.90
583 584 1.070445 GGGCTGTCCGATCATCTGG 59.930 63.158 0.00 0.00 0.00 3.86
584 585 1.596477 GGCTGTCCGATCATCTGGC 60.596 63.158 0.00 0.00 0.00 4.85
585 586 1.596477 GCTGTCCGATCATCTGGCC 60.596 63.158 0.00 0.00 0.00 5.36
586 587 1.300465 CTGTCCGATCATCTGGCCG 60.300 63.158 0.00 0.00 0.00 6.13
587 588 2.029666 GTCCGATCATCTGGCCGG 59.970 66.667 4.71 4.71 43.02 6.13
588 589 3.928779 TCCGATCATCTGGCCGGC 61.929 66.667 21.18 21.18 41.55 6.13
589 590 4.996434 CCGATCATCTGGCCGGCC 62.996 72.222 39.40 39.40 35.29 6.13
590 591 3.933722 CGATCATCTGGCCGGCCT 61.934 66.667 43.34 25.11 36.94 5.19
591 592 2.281345 GATCATCTGGCCGGCCTG 60.281 66.667 43.34 40.98 36.94 4.85
592 593 2.769621 ATCATCTGGCCGGCCTGA 60.770 61.111 44.90 44.90 45.72 3.86
593 594 2.728443 GATCATCTGGCCGGCCTGAG 62.728 65.000 44.51 36.29 45.06 3.35
624 625 4.660938 GGCCGGGTCAAGCCTTGT 62.661 66.667 2.18 0.00 46.14 3.16
625 626 3.365265 GCCGGGTCAAGCCTTGTG 61.365 66.667 2.18 0.00 37.43 3.33
626 627 3.365265 CCGGGTCAAGCCTTGTGC 61.365 66.667 4.04 0.00 41.71 4.57
627 628 3.365265 CGGGTCAAGCCTTGTGCC 61.365 66.667 4.04 8.11 42.71 5.01
628 629 2.991540 GGGTCAAGCCTTGTGCCC 60.992 66.667 18.70 18.70 42.71 5.36
629 630 2.991540 GGTCAAGCCTTGTGCCCC 60.992 66.667 4.04 0.00 42.71 5.80
630 631 3.365265 GTCAAGCCTTGTGCCCCG 61.365 66.667 4.04 0.00 42.71 5.73
704 705 2.593436 CTTGCCACCCCGTCGTTT 60.593 61.111 0.00 0.00 0.00 3.60
705 706 2.124236 TTGCCACCCCGTCGTTTT 60.124 55.556 0.00 0.00 0.00 2.43
706 707 0.885596 CTTGCCACCCCGTCGTTTTA 60.886 55.000 0.00 0.00 0.00 1.52
707 708 0.885596 TTGCCACCCCGTCGTTTTAG 60.886 55.000 0.00 0.00 0.00 1.85
708 709 1.004679 GCCACCCCGTCGTTTTAGA 60.005 57.895 0.00 0.00 0.00 2.10
709 710 0.603439 GCCACCCCGTCGTTTTAGAA 60.603 55.000 0.00 0.00 0.00 2.10
710 711 1.881591 CCACCCCGTCGTTTTAGAAA 58.118 50.000 0.00 0.00 0.00 2.52
711 712 2.220313 CCACCCCGTCGTTTTAGAAAA 58.780 47.619 0.00 0.00 0.00 2.29
712 713 2.815503 CCACCCCGTCGTTTTAGAAAAT 59.184 45.455 0.00 0.00 0.00 1.82
713 714 3.253921 CCACCCCGTCGTTTTAGAAAATT 59.746 43.478 0.00 0.00 0.00 1.82
714 715 4.223659 CACCCCGTCGTTTTAGAAAATTG 58.776 43.478 0.00 0.00 0.00 2.32
715 716 3.239254 CCCCGTCGTTTTAGAAAATTGC 58.761 45.455 0.00 0.00 0.00 3.56
716 717 3.057806 CCCCGTCGTTTTAGAAAATTGCT 60.058 43.478 0.00 0.00 0.00 3.91
717 718 4.154556 CCCCGTCGTTTTAGAAAATTGCTA 59.845 41.667 0.00 0.00 0.00 3.49
718 719 5.321516 CCCGTCGTTTTAGAAAATTGCTAG 58.678 41.667 0.00 0.00 0.00 3.42
719 720 5.321516 CCGTCGTTTTAGAAAATTGCTAGG 58.678 41.667 0.00 0.00 0.00 3.02
720 721 5.106830 CCGTCGTTTTAGAAAATTGCTAGGT 60.107 40.000 0.00 0.00 0.00 3.08
721 722 5.788531 CGTCGTTTTAGAAAATTGCTAGGTG 59.211 40.000 0.00 0.00 0.00 4.00
722 723 6.565247 CGTCGTTTTAGAAAATTGCTAGGTGT 60.565 38.462 0.00 0.00 0.00 4.16
723 724 6.577427 GTCGTTTTAGAAAATTGCTAGGTGTG 59.423 38.462 0.00 0.00 0.00 3.82
724 725 5.856455 CGTTTTAGAAAATTGCTAGGTGTGG 59.144 40.000 0.00 0.00 0.00 4.17
725 726 6.293735 CGTTTTAGAAAATTGCTAGGTGTGGA 60.294 38.462 0.00 0.00 0.00 4.02
726 727 7.574967 CGTTTTAGAAAATTGCTAGGTGTGGAT 60.575 37.037 0.00 0.00 0.00 3.41
727 728 7.391148 TTTAGAAAATTGCTAGGTGTGGATC 57.609 36.000 0.00 0.00 0.00 3.36
728 729 5.184892 AGAAAATTGCTAGGTGTGGATCT 57.815 39.130 0.00 0.00 0.00 2.75
729 730 5.574188 AGAAAATTGCTAGGTGTGGATCTT 58.426 37.500 0.00 0.00 0.00 2.40
730 731 5.416952 AGAAAATTGCTAGGTGTGGATCTTG 59.583 40.000 0.00 0.00 0.00 3.02
731 732 2.113860 TTGCTAGGTGTGGATCTTGC 57.886 50.000 0.00 0.00 32.24 4.01
732 733 0.253044 TGCTAGGTGTGGATCTTGCC 59.747 55.000 0.00 0.00 30.69 4.52
733 734 0.464554 GCTAGGTGTGGATCTTGCCC 60.465 60.000 0.00 0.00 0.00 5.36
734 735 0.181350 CTAGGTGTGGATCTTGCCCC 59.819 60.000 0.00 0.00 0.00 5.80
735 736 1.279025 TAGGTGTGGATCTTGCCCCC 61.279 60.000 0.00 0.00 0.00 5.40
736 737 2.438434 GTGTGGATCTTGCCCCCG 60.438 66.667 0.00 0.00 0.00 5.73
737 738 2.609299 TGTGGATCTTGCCCCCGA 60.609 61.111 0.00 0.00 0.00 5.14
738 739 2.124695 GTGGATCTTGCCCCCGAC 60.125 66.667 0.00 0.00 0.00 4.79
739 740 2.609299 TGGATCTTGCCCCCGACA 60.609 61.111 0.00 0.00 0.00 4.35
740 741 2.124695 GGATCTTGCCCCCGACAC 60.125 66.667 0.00 0.00 0.00 3.67
741 742 2.668632 GATCTTGCCCCCGACACA 59.331 61.111 0.00 0.00 0.00 3.72
742 743 1.002624 GATCTTGCCCCCGACACAA 60.003 57.895 0.00 0.00 0.00 3.33
743 744 1.002134 ATCTTGCCCCCGACACAAG 60.002 57.895 0.00 0.00 41.70 3.16
744 745 2.484287 ATCTTGCCCCCGACACAAGG 62.484 60.000 0.00 0.00 40.90 3.61
745 746 4.966787 TTGCCCCCGACACAAGGC 62.967 66.667 0.00 0.00 45.96 4.35
749 750 2.669569 CCCCGACACAAGGCACTG 60.670 66.667 0.00 0.00 40.86 3.66
750 751 3.357079 CCCGACACAAGGCACTGC 61.357 66.667 0.00 0.00 40.86 4.40
751 752 3.716006 CCGACACAAGGCACTGCG 61.716 66.667 0.00 0.00 40.86 5.18
752 753 3.716006 CGACACAAGGCACTGCGG 61.716 66.667 0.00 0.00 40.86 5.69
753 754 2.280797 GACACAAGGCACTGCGGA 60.281 61.111 0.00 0.00 40.86 5.54
754 755 2.591715 ACACAAGGCACTGCGGAC 60.592 61.111 0.00 0.00 40.86 4.79
755 756 3.716006 CACAAGGCACTGCGGACG 61.716 66.667 0.00 0.00 40.86 4.79
756 757 3.923864 ACAAGGCACTGCGGACGA 61.924 61.111 0.00 0.00 40.86 4.20
757 758 3.414700 CAAGGCACTGCGGACGAC 61.415 66.667 0.00 0.00 40.86 4.34
769 770 2.973155 CGGACGACGCTCTTATTTTC 57.027 50.000 0.00 0.00 34.82 2.29
770 771 2.527100 CGGACGACGCTCTTATTTTCT 58.473 47.619 0.00 0.00 34.82 2.52
771 772 3.688272 CGGACGACGCTCTTATTTTCTA 58.312 45.455 0.00 0.00 34.82 2.10
772 773 3.481388 CGGACGACGCTCTTATTTTCTAC 59.519 47.826 0.00 0.00 34.82 2.59
773 774 3.481388 GGACGACGCTCTTATTTTCTACG 59.519 47.826 0.00 0.00 0.00 3.51
774 775 4.337763 GACGACGCTCTTATTTTCTACGA 58.662 43.478 0.00 0.00 0.00 3.43
775 776 4.341099 ACGACGCTCTTATTTTCTACGAG 58.659 43.478 0.00 0.00 0.00 4.18
776 777 4.142730 ACGACGCTCTTATTTTCTACGAGT 60.143 41.667 0.00 0.00 0.00 4.18
777 778 4.433945 CGACGCTCTTATTTTCTACGAGTC 59.566 45.833 0.00 0.00 0.00 3.36
778 779 4.341099 ACGCTCTTATTTTCTACGAGTCG 58.659 43.478 11.85 11.85 0.00 4.18
810 811 3.553597 GAAGCGTCTCGATTCCGAT 57.446 52.632 8.60 0.00 44.80 4.18
823 861 0.961857 TTCCGATCCGACTCCGACAA 60.962 55.000 0.00 0.00 38.22 3.18
831 869 3.934391 GACTCCGACAAGGTGCCGG 62.934 68.421 0.00 0.00 44.22 6.13
837 875 4.887190 ACAAGGTGCCGGCGGTTT 62.887 61.111 28.82 12.68 0.00 3.27
838 876 2.670251 CAAGGTGCCGGCGGTTTA 60.670 61.111 28.82 11.78 0.00 2.01
839 877 2.359478 AAGGTGCCGGCGGTTTAG 60.359 61.111 28.82 0.97 0.00 1.85
840 878 2.886134 AAGGTGCCGGCGGTTTAGA 61.886 57.895 28.82 0.00 0.00 2.10
841 879 2.124860 GGTGCCGGCGGTTTAGAT 60.125 61.111 28.82 0.00 0.00 1.98
842 880 2.178235 GGTGCCGGCGGTTTAGATC 61.178 63.158 28.82 9.29 0.00 2.75
843 881 2.202824 TGCCGGCGGTTTAGATCG 60.203 61.111 28.82 0.00 0.00 3.69
844 882 2.202837 GCCGGCGGTTTAGATCGT 60.203 61.111 28.82 0.00 0.00 3.73
845 883 1.066257 GCCGGCGGTTTAGATCGTA 59.934 57.895 28.82 0.00 0.00 3.43
846 884 0.528249 GCCGGCGGTTTAGATCGTAA 60.528 55.000 28.82 0.00 0.00 3.18
847 885 1.870993 GCCGGCGGTTTAGATCGTAAT 60.871 52.381 28.82 0.00 0.00 1.89
848 886 1.790623 CCGGCGGTTTAGATCGTAATG 59.209 52.381 19.97 0.00 0.00 1.90
849 887 1.191647 CGGCGGTTTAGATCGTAATGC 59.808 52.381 0.00 0.00 0.00 3.56
869 907 4.320023 TGCCGCCATCGTTAAATATACAT 58.680 39.130 0.00 0.00 0.00 2.29
870 908 5.480205 TGCCGCCATCGTTAAATATACATA 58.520 37.500 0.00 0.00 0.00 2.29
872 910 5.349270 GCCGCCATCGTTAAATATACATACA 59.651 40.000 0.00 0.00 0.00 2.29
873 911 6.455113 GCCGCCATCGTTAAATATACATACAG 60.455 42.308 0.00 0.00 0.00 2.74
874 912 6.035650 CCGCCATCGTTAAATATACATACAGG 59.964 42.308 0.00 0.00 0.00 4.00
875 913 6.588756 CGCCATCGTTAAATATACATACAGGT 59.411 38.462 0.00 0.00 0.00 4.00
890 928 0.671781 CAGGTCGGACAGGCAAAGAG 60.672 60.000 10.76 0.00 0.00 2.85
891 929 2.035442 GGTCGGACAGGCAAAGAGC 61.035 63.158 10.76 0.00 44.65 4.09
913 951 2.288961 AACTATTCGACACGGCGATT 57.711 45.000 16.62 0.00 40.35 3.34
919 957 1.153706 CGACACGGCGATTAACCCT 60.154 57.895 16.62 0.00 0.00 4.34
920 958 1.143969 CGACACGGCGATTAACCCTC 61.144 60.000 16.62 0.00 0.00 4.30
921 959 0.175073 GACACGGCGATTAACCCTCT 59.825 55.000 16.62 0.00 0.00 3.69
923 961 1.153429 ACGGCGATTAACCCTCTGC 60.153 57.895 16.62 0.00 0.00 4.26
924 962 1.153449 CGGCGATTAACCCTCTGCA 60.153 57.895 0.00 0.00 0.00 4.41
1026 1069 2.683933 GAGGACCTTGAGGCGGGA 60.684 66.667 0.00 0.00 39.32 5.14
1030 1073 3.358076 GACCTTGAGGCGGGAGTCG 62.358 68.421 0.00 0.00 41.26 4.18
1213 1256 1.154016 CTCGCCAGAATCACGTCGT 60.154 57.895 0.00 0.00 0.00 4.34
1215 1258 0.179181 TCGCCAGAATCACGTCGTAC 60.179 55.000 0.00 0.00 0.00 3.67
1293 1339 1.817099 CTCGAAGCTGGCCATGGAC 60.817 63.158 18.40 15.32 0.00 4.02
1407 1456 1.933115 CTGGTGGTACATTTGCCGGC 61.933 60.000 22.73 22.73 44.52 6.13
1461 1510 1.206072 GCAACAGCAGCTTCTGTCG 59.794 57.895 19.49 9.91 45.77 4.35
1628 1677 1.154282 TCGTGTGCGACATCGAGAC 60.154 57.895 5.26 1.37 42.81 3.36
1674 1723 3.269178 GGAAGAAGAGGTCTCTGCATTG 58.731 50.000 8.55 0.00 40.36 2.82
1695 1744 2.836360 GTGGAGGCCGATCGGGTA 60.836 66.667 33.98 0.58 38.44 3.69
1811 1860 1.523758 GGGTCGCTGAGTGTTTCATT 58.476 50.000 0.00 0.00 34.68 2.57
1813 1862 1.126846 GGTCGCTGAGTGTTTCATTCG 59.873 52.381 0.00 0.00 34.68 3.34
1815 1864 2.984471 GTCGCTGAGTGTTTCATTCGTA 59.016 45.455 0.00 0.00 34.68 3.43
1816 1865 2.984471 TCGCTGAGTGTTTCATTCGTAC 59.016 45.455 0.00 0.00 34.68 3.67
1817 1866 2.092211 CGCTGAGTGTTTCATTCGTACC 59.908 50.000 0.00 0.00 34.68 3.34
1819 1868 2.666508 CTGAGTGTTTCATTCGTACCGG 59.333 50.000 0.00 0.00 34.68 5.28
1820 1869 2.296752 TGAGTGTTTCATTCGTACCGGA 59.703 45.455 9.46 0.00 0.00 5.14
1874 1978 1.280710 ACTGTGGTTGTGGTGACAGAA 59.719 47.619 0.00 0.00 44.46 3.02
1888 1992 6.037610 GTGGTGACAGAATCATAGGTGATTTC 59.962 42.308 5.26 1.08 46.52 2.17
1890 1994 9.167824 TGGTGACAGAATCATAGGTGATTTCCA 62.168 40.741 5.26 5.56 44.69 3.53
1897 2001 4.960938 TCATAGGTGATTTCCAGATTCCG 58.039 43.478 0.00 0.00 0.00 4.30
1906 2010 1.788229 TCCAGATTCCGGCTGATACA 58.212 50.000 8.95 0.00 35.39 2.29
1958 2062 7.744715 CGTAAAAGTAGTGTATGCCTCTTTTTG 59.255 37.037 0.00 0.00 36.77 2.44
2001 2105 5.975693 TTGACACCTTCAGACTTGTTTTT 57.024 34.783 0.00 0.00 34.94 1.94
2151 2379 3.521937 AGACCGGGTTTCATTATCAAGGA 59.478 43.478 6.32 0.00 0.00 3.36
2152 2380 4.018779 AGACCGGGTTTCATTATCAAGGAA 60.019 41.667 6.32 0.00 0.00 3.36
2153 2381 4.867086 ACCGGGTTTCATTATCAAGGAAT 58.133 39.130 6.32 0.00 30.58 3.01
2154 2382 6.008696 ACCGGGTTTCATTATCAAGGAATA 57.991 37.500 6.32 0.00 30.58 1.75
2240 2468 7.624360 AATCTAACCATTGATTTCTTACGCA 57.376 32.000 0.00 0.00 29.63 5.24
2279 2507 6.170506 ACTAAACGAAAGAAGGCATCACATA 58.829 36.000 0.00 0.00 0.00 2.29
2281 2509 5.490139 AACGAAAGAAGGCATCACATATG 57.510 39.130 0.00 0.00 0.00 1.78
2300 2528 4.833478 ATGTCACCAAACTATGAGAGCT 57.167 40.909 0.00 0.00 0.00 4.09
2301 2529 4.623932 TGTCACCAAACTATGAGAGCTT 57.376 40.909 0.00 0.00 0.00 3.74
2433 2662 2.398252 GGGTAGACCAAACTAGTGCC 57.602 55.000 0.00 0.00 39.85 5.01
2453 2702 0.110056 GCGCCTCACTGATTGTGTTG 60.110 55.000 0.00 0.00 46.27 3.33
2458 2707 3.058914 GCCTCACTGATTGTGTTGTGTAC 60.059 47.826 0.00 0.00 46.27 2.90
2465 2714 5.523916 ACTGATTGTGTTGTGTACAGTCTTC 59.476 40.000 0.00 0.00 37.45 2.87
2475 2724 9.214957 TGTTGTGTACAGTCTTCTATAATTTGG 57.785 33.333 0.00 0.00 31.68 3.28
2602 2851 6.460781 CCCACTAATACCGCTCACATAAATA 58.539 40.000 0.00 0.00 0.00 1.40
2673 2922 4.900652 ACATCATATCACCTGAGCTTCTCT 59.099 41.667 0.00 0.00 0.00 3.10
2710 2959 9.797642 ATGAATGCCATACTCAATAACTGAATA 57.202 29.630 0.00 0.00 30.78 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.452455 AGAAATTTGCTGAACACCGAGTAG 59.548 41.667 0.00 0.00 0.00 2.57
1 2 4.385825 AGAAATTTGCTGAACACCGAGTA 58.614 39.130 0.00 0.00 0.00 2.59
2 3 3.214328 AGAAATTTGCTGAACACCGAGT 58.786 40.909 0.00 0.00 0.00 4.18
3 4 3.904136 AGAAATTTGCTGAACACCGAG 57.096 42.857 0.00 0.00 0.00 4.63
4 5 4.647424 AAAGAAATTTGCTGAACACCGA 57.353 36.364 0.00 0.00 0.00 4.69
5 6 6.205784 TCTAAAAGAAATTTGCTGAACACCG 58.794 36.000 0.00 0.00 32.27 4.94
6 7 8.593492 AATCTAAAAGAAATTTGCTGAACACC 57.407 30.769 0.00 0.00 32.27 4.16
45 46 9.601971 GTTCGCCGATTTTAATTATATAGCAAA 57.398 29.630 0.00 0.00 0.00 3.68
46 47 8.995220 AGTTCGCCGATTTTAATTATATAGCAA 58.005 29.630 0.00 0.00 0.00 3.91
47 48 8.542497 AGTTCGCCGATTTTAATTATATAGCA 57.458 30.769 0.00 0.00 0.00 3.49
48 49 9.821662 AAAGTTCGCCGATTTTAATTATATAGC 57.178 29.630 0.00 0.00 0.00 2.97
51 52 9.659830 GACAAAGTTCGCCGATTTTAATTATAT 57.340 29.630 0.00 0.00 0.00 0.86
52 53 8.124199 GGACAAAGTTCGCCGATTTTAATTATA 58.876 33.333 0.00 0.00 0.00 0.98
53 54 6.970613 GGACAAAGTTCGCCGATTTTAATTAT 59.029 34.615 0.00 0.00 0.00 1.28
54 55 6.072618 TGGACAAAGTTCGCCGATTTTAATTA 60.073 34.615 0.00 0.00 0.00 1.40
55 56 5.158494 GGACAAAGTTCGCCGATTTTAATT 58.842 37.500 0.00 0.00 0.00 1.40
56 57 4.216687 TGGACAAAGTTCGCCGATTTTAAT 59.783 37.500 0.00 0.00 0.00 1.40
57 58 3.564644 TGGACAAAGTTCGCCGATTTTAA 59.435 39.130 0.00 0.00 0.00 1.52
58 59 3.139850 TGGACAAAGTTCGCCGATTTTA 58.860 40.909 0.00 0.00 0.00 1.52
59 60 1.950909 TGGACAAAGTTCGCCGATTTT 59.049 42.857 0.00 0.00 0.00 1.82
60 61 1.600023 TGGACAAAGTTCGCCGATTT 58.400 45.000 0.00 0.00 0.00 2.17
61 62 1.600023 TTGGACAAAGTTCGCCGATT 58.400 45.000 0.00 0.00 0.00 3.34
62 63 1.600023 TTTGGACAAAGTTCGCCGAT 58.400 45.000 0.00 0.00 0.00 4.18
63 64 1.600023 ATTTGGACAAAGTTCGCCGA 58.400 45.000 3.71 0.00 33.32 5.54
64 65 3.757745 ATATTTGGACAAAGTTCGCCG 57.242 42.857 3.71 0.00 33.32 6.46
65 66 4.976116 GCATATATTTGGACAAAGTTCGCC 59.024 41.667 3.71 0.00 33.32 5.54
66 67 5.821204 AGCATATATTTGGACAAAGTTCGC 58.179 37.500 3.71 3.10 33.32 4.70
67 68 7.015226 TGAGCATATATTTGGACAAAGTTCG 57.985 36.000 3.71 0.00 33.32 3.95
68 69 8.462016 ACTTGAGCATATATTTGGACAAAGTTC 58.538 33.333 3.71 0.00 33.32 3.01
69 70 8.353423 ACTTGAGCATATATTTGGACAAAGTT 57.647 30.769 3.71 0.00 33.32 2.66
70 71 7.944729 ACTTGAGCATATATTTGGACAAAGT 57.055 32.000 3.71 0.00 33.32 2.66
71 72 7.703621 CCAACTTGAGCATATATTTGGACAAAG 59.296 37.037 4.67 0.00 35.07 2.77
72 73 7.546358 CCAACTTGAGCATATATTTGGACAAA 58.454 34.615 4.67 0.00 35.07 2.83
73 74 6.405731 GCCAACTTGAGCATATATTTGGACAA 60.406 38.462 12.33 2.44 35.07 3.18
74 75 5.067674 GCCAACTTGAGCATATATTTGGACA 59.932 40.000 12.33 0.00 35.07 4.02
75 76 5.507985 GGCCAACTTGAGCATATATTTGGAC 60.508 44.000 12.33 7.10 35.07 4.02
76 77 4.584325 GGCCAACTTGAGCATATATTTGGA 59.416 41.667 12.33 0.00 35.07 3.53
77 78 4.557296 CGGCCAACTTGAGCATATATTTGG 60.557 45.833 2.24 5.93 36.01 3.28
78 79 4.275689 TCGGCCAACTTGAGCATATATTTG 59.724 41.667 2.24 0.00 0.00 2.32
79 80 4.460263 TCGGCCAACTTGAGCATATATTT 58.540 39.130 2.24 0.00 0.00 1.40
80 81 4.085357 TCGGCCAACTTGAGCATATATT 57.915 40.909 2.24 0.00 0.00 1.28
81 82 3.769739 TCGGCCAACTTGAGCATATAT 57.230 42.857 2.24 0.00 0.00 0.86
82 83 3.552132 TTCGGCCAACTTGAGCATATA 57.448 42.857 2.24 0.00 0.00 0.86
83 84 2.418368 TTCGGCCAACTTGAGCATAT 57.582 45.000 2.24 0.00 0.00 1.78
84 85 2.192664 TTTCGGCCAACTTGAGCATA 57.807 45.000 2.24 0.00 0.00 3.14
85 86 1.549203 ATTTCGGCCAACTTGAGCAT 58.451 45.000 2.24 0.00 0.00 3.79
86 87 1.327303 AATTTCGGCCAACTTGAGCA 58.673 45.000 2.24 0.00 0.00 4.26
87 88 2.061028 CAAATTTCGGCCAACTTGAGC 58.939 47.619 2.24 0.00 0.00 4.26
88 89 3.308530 GACAAATTTCGGCCAACTTGAG 58.691 45.455 2.24 0.00 0.00 3.02
89 90 2.287308 CGACAAATTTCGGCCAACTTGA 60.287 45.455 2.24 0.00 35.26 3.02
90 91 2.050691 CGACAAATTTCGGCCAACTTG 58.949 47.619 2.24 0.00 35.26 3.16
91 92 1.679153 ACGACAAATTTCGGCCAACTT 59.321 42.857 2.24 0.00 43.58 2.66
92 93 1.001815 CACGACAAATTTCGGCCAACT 60.002 47.619 2.24 0.00 43.58 3.16
93 94 1.268845 ACACGACAAATTTCGGCCAAC 60.269 47.619 2.24 0.00 43.58 3.77
94 95 1.025812 ACACGACAAATTTCGGCCAA 58.974 45.000 2.24 0.00 43.58 4.52
95 96 1.025812 AACACGACAAATTTCGGCCA 58.974 45.000 2.24 0.00 43.58 5.36
96 97 2.128367 AAACACGACAAATTTCGGCC 57.872 45.000 4.68 0.00 43.58 6.13
97 98 2.655001 GCTAAACACGACAAATTTCGGC 59.345 45.455 4.68 0.00 43.58 5.54
98 99 3.231160 GGCTAAACACGACAAATTTCGG 58.769 45.455 4.68 0.00 43.58 4.30
99 100 2.900046 CGGCTAAACACGACAAATTTCG 59.100 45.455 0.00 0.00 44.87 3.46
100 101 4.136517 TCGGCTAAACACGACAAATTTC 57.863 40.909 0.00 0.00 33.69 2.17
101 102 4.035909 AGTTCGGCTAAACACGACAAATTT 59.964 37.500 0.00 0.00 39.04 1.82
102 103 3.562557 AGTTCGGCTAAACACGACAAATT 59.437 39.130 0.00 0.00 39.04 1.82
103 104 3.135994 AGTTCGGCTAAACACGACAAAT 58.864 40.909 0.00 0.00 39.04 2.32
104 105 2.553086 AGTTCGGCTAAACACGACAAA 58.447 42.857 0.00 0.00 39.04 2.83
105 106 2.228138 AGTTCGGCTAAACACGACAA 57.772 45.000 0.00 0.00 39.04 3.18
106 107 2.129607 GAAGTTCGGCTAAACACGACA 58.870 47.619 0.00 0.00 39.04 4.35
107 108 1.123756 CGAAGTTCGGCTAAACACGAC 59.876 52.381 17.61 0.00 39.04 4.34
108 109 1.411394 CGAAGTTCGGCTAAACACGA 58.589 50.000 17.61 0.00 36.00 4.35
109 110 0.179258 GCGAAGTTCGGCTAAACACG 60.179 55.000 25.55 0.00 40.84 4.49
110 111 1.136336 CAGCGAAGTTCGGCTAAACAC 60.136 52.381 25.55 7.22 40.84 3.32
111 112 1.144969 CAGCGAAGTTCGGCTAAACA 58.855 50.000 25.55 0.00 40.84 2.83
112 113 1.425412 TCAGCGAAGTTCGGCTAAAC 58.575 50.000 25.55 8.64 40.84 2.01
113 114 1.796459 GTTCAGCGAAGTTCGGCTAAA 59.204 47.619 25.55 13.05 40.84 1.85
114 115 1.000506 AGTTCAGCGAAGTTCGGCTAA 59.999 47.619 25.55 7.81 40.84 3.09
115 116 0.601558 AGTTCAGCGAAGTTCGGCTA 59.398 50.000 25.55 7.56 40.84 3.93
116 117 0.946221 CAGTTCAGCGAAGTTCGGCT 60.946 55.000 25.55 19.20 40.84 5.52
117 118 1.222115 ACAGTTCAGCGAAGTTCGGC 61.222 55.000 25.55 17.40 40.84 5.54
118 119 0.508641 CACAGTTCAGCGAAGTTCGG 59.491 55.000 25.55 10.95 40.84 4.30
119 120 0.111089 GCACAGTTCAGCGAAGTTCG 60.111 55.000 20.87 20.87 43.89 3.95
120 121 0.235926 GGCACAGTTCAGCGAAGTTC 59.764 55.000 0.00 0.00 0.00 3.01
121 122 1.498865 CGGCACAGTTCAGCGAAGTT 61.499 55.000 0.00 0.00 0.00 2.66
122 123 1.956170 CGGCACAGTTCAGCGAAGT 60.956 57.895 0.00 0.00 0.00 3.01
123 124 1.221466 TTCGGCACAGTTCAGCGAAG 61.221 55.000 0.00 0.00 0.00 3.79
124 125 0.812014 TTTCGGCACAGTTCAGCGAA 60.812 50.000 0.00 0.00 0.00 4.70
125 126 0.602638 ATTTCGGCACAGTTCAGCGA 60.603 50.000 0.00 0.00 0.00 4.93
126 127 0.238289 AATTTCGGCACAGTTCAGCG 59.762 50.000 0.00 0.00 0.00 5.18
127 128 2.053627 CAAATTTCGGCACAGTTCAGC 58.946 47.619 0.00 0.00 0.00 4.26
128 129 2.053627 GCAAATTTCGGCACAGTTCAG 58.946 47.619 0.00 0.00 0.00 3.02
129 130 1.680735 AGCAAATTTCGGCACAGTTCA 59.319 42.857 3.62 0.00 0.00 3.18
130 131 2.422276 AGCAAATTTCGGCACAGTTC 57.578 45.000 3.62 0.00 0.00 3.01
131 132 5.637006 TTATAGCAAATTTCGGCACAGTT 57.363 34.783 3.62 0.00 0.00 3.16
132 133 5.835113 ATTATAGCAAATTTCGGCACAGT 57.165 34.783 3.62 0.00 0.00 3.55
133 134 7.524294 AAAATTATAGCAAATTTCGGCACAG 57.476 32.000 3.62 0.00 37.93 3.66
134 135 7.897575 AAAAATTATAGCAAATTTCGGCACA 57.102 28.000 3.62 0.00 37.93 4.57
188 189 4.131088 GTCTCCAGTCGTCGGCCC 62.131 72.222 0.00 0.00 0.00 5.80
189 190 4.131088 GGTCTCCAGTCGTCGGCC 62.131 72.222 0.00 0.00 0.00 6.13
190 191 2.927580 TTGGTCTCCAGTCGTCGGC 61.928 63.158 0.00 0.00 33.81 5.54
191 192 1.080705 GTTGGTCTCCAGTCGTCGG 60.081 63.158 0.00 0.00 33.81 4.79
192 193 0.109689 GAGTTGGTCTCCAGTCGTCG 60.110 60.000 0.00 0.00 37.22 5.12
193 194 0.109689 CGAGTTGGTCTCCAGTCGTC 60.110 60.000 11.76 0.00 39.84 4.20
194 195 1.957562 CGAGTTGGTCTCCAGTCGT 59.042 57.895 11.76 0.00 39.84 4.34
195 196 1.444553 GCGAGTTGGTCTCCAGTCG 60.445 63.158 14.21 14.21 41.59 4.18
196 197 1.079750 GGCGAGTTGGTCTCCAGTC 60.080 63.158 0.00 0.00 39.84 3.51
197 198 2.584391 GGGCGAGTTGGTCTCCAGT 61.584 63.158 0.00 0.00 39.84 4.00
198 199 2.266055 GGGCGAGTTGGTCTCCAG 59.734 66.667 0.00 0.00 39.84 3.86
199 200 3.319198 GGGGCGAGTTGGTCTCCA 61.319 66.667 0.00 0.00 39.84 3.86
200 201 4.097361 GGGGGCGAGTTGGTCTCC 62.097 72.222 0.00 0.00 39.84 3.71
201 202 2.406002 TTTGGGGGCGAGTTGGTCTC 62.406 60.000 0.00 0.00 39.62 3.36
202 203 2.457323 TTTGGGGGCGAGTTGGTCT 61.457 57.895 0.00 0.00 0.00 3.85
203 204 2.114411 TTTGGGGGCGAGTTGGTC 59.886 61.111 0.00 0.00 0.00 4.02
204 205 2.203437 GTTTGGGGGCGAGTTGGT 60.203 61.111 0.00 0.00 0.00 3.67
205 206 1.971695 GAGTTTGGGGGCGAGTTGG 60.972 63.158 0.00 0.00 0.00 3.77
206 207 0.609131 ATGAGTTTGGGGGCGAGTTG 60.609 55.000 0.00 0.00 0.00 3.16
207 208 0.112412 AATGAGTTTGGGGGCGAGTT 59.888 50.000 0.00 0.00 0.00 3.01
208 209 0.112412 AAATGAGTTTGGGGGCGAGT 59.888 50.000 0.00 0.00 0.00 4.18
209 210 1.256812 AAAATGAGTTTGGGGGCGAG 58.743 50.000 0.00 0.00 0.00 5.03
210 211 1.710816 AAAAATGAGTTTGGGGGCGA 58.289 45.000 0.00 0.00 0.00 5.54
226 227 0.393820 AGGGTGAGCCGACGTAAAAA 59.606 50.000 0.00 0.00 34.97 1.94
227 228 0.037975 GAGGGTGAGCCGACGTAAAA 60.038 55.000 0.00 0.00 34.97 1.52
228 229 1.180456 TGAGGGTGAGCCGACGTAAA 61.180 55.000 0.00 0.00 34.97 2.01
229 230 1.592400 CTGAGGGTGAGCCGACGTAA 61.592 60.000 0.00 0.00 34.97 3.18
230 231 2.034532 TGAGGGTGAGCCGACGTA 59.965 61.111 0.00 0.00 34.97 3.57
231 232 3.374402 CTGAGGGTGAGCCGACGT 61.374 66.667 0.00 0.00 34.97 4.34
232 233 3.062466 TCTGAGGGTGAGCCGACG 61.062 66.667 0.00 0.00 34.97 5.12
233 234 2.574399 GTCTGAGGGTGAGCCGAC 59.426 66.667 0.00 0.00 34.97 4.79
234 235 3.062466 CGTCTGAGGGTGAGCCGA 61.062 66.667 0.00 0.00 34.97 5.54
235 236 3.062466 TCGTCTGAGGGTGAGCCG 61.062 66.667 0.00 0.00 34.97 5.52
236 237 2.574399 GTCGTCTGAGGGTGAGCC 59.426 66.667 0.00 0.00 0.00 4.70
237 238 1.658686 ATCGTCGTCTGAGGGTGAGC 61.659 60.000 0.00 0.00 0.00 4.26
238 239 0.811915 AATCGTCGTCTGAGGGTGAG 59.188 55.000 0.00 0.00 0.00 3.51
239 240 1.254026 AAATCGTCGTCTGAGGGTGA 58.746 50.000 0.00 0.00 0.00 4.02
240 241 2.080286 AAAATCGTCGTCTGAGGGTG 57.920 50.000 0.00 0.00 0.00 4.61
241 242 2.165845 CCTAAAATCGTCGTCTGAGGGT 59.834 50.000 0.00 0.00 0.00 4.34
242 243 2.810650 CCTAAAATCGTCGTCTGAGGG 58.189 52.381 0.00 0.00 0.00 4.30
243 244 2.194271 GCCTAAAATCGTCGTCTGAGG 58.806 52.381 0.00 0.00 0.00 3.86
244 245 1.846782 CGCCTAAAATCGTCGTCTGAG 59.153 52.381 0.00 0.00 0.00 3.35
245 246 1.904144 CGCCTAAAATCGTCGTCTGA 58.096 50.000 0.00 0.00 0.00 3.27
246 247 0.297820 GCGCCTAAAATCGTCGTCTG 59.702 55.000 0.00 0.00 0.00 3.51
247 248 0.804933 GGCGCCTAAAATCGTCGTCT 60.805 55.000 22.15 0.00 0.00 4.18
248 249 1.634753 GGCGCCTAAAATCGTCGTC 59.365 57.895 22.15 0.00 0.00 4.20
249 250 1.812507 GGGCGCCTAAAATCGTCGT 60.813 57.895 28.56 0.00 0.00 4.34
250 251 2.531376 GGGGCGCCTAAAATCGTCG 61.531 63.158 28.56 0.00 0.00 5.12
251 252 2.184830 GGGGGCGCCTAAAATCGTC 61.185 63.158 28.56 5.59 0.00 4.20
252 253 2.124445 GGGGGCGCCTAAAATCGT 60.124 61.111 28.56 0.00 0.00 3.73
253 254 2.186826 CAGGGGGCGCCTAAAATCG 61.187 63.158 28.56 5.85 0.00 3.34
254 255 0.395173 TTCAGGGGGCGCCTAAAATC 60.395 55.000 28.56 8.16 0.00 2.17
255 256 0.395724 CTTCAGGGGGCGCCTAAAAT 60.396 55.000 28.56 5.30 0.00 1.82
256 257 1.001393 CTTCAGGGGGCGCCTAAAA 60.001 57.895 28.56 18.20 0.00 1.52
257 258 2.674754 CTTCAGGGGGCGCCTAAA 59.325 61.111 28.56 14.87 0.00 1.85
258 259 3.407967 CCTTCAGGGGGCGCCTAA 61.408 66.667 28.56 5.93 0.00 2.69
277 278 2.093216 GAGCATCTTCAGCCGTTGG 58.907 57.895 0.00 0.00 0.00 3.77
289 290 2.225963 GCTGCATCCATGTAAGAGCATC 59.774 50.000 0.00 0.00 0.00 3.91
290 291 2.228059 GCTGCATCCATGTAAGAGCAT 58.772 47.619 0.00 0.00 0.00 3.79
291 292 1.671979 GCTGCATCCATGTAAGAGCA 58.328 50.000 0.00 0.00 0.00 4.26
292 293 0.585357 CGCTGCATCCATGTAAGAGC 59.415 55.000 0.00 0.00 0.00 4.09
293 294 0.585357 GCGCTGCATCCATGTAAGAG 59.415 55.000 0.00 0.00 0.00 2.85
294 295 0.815213 GGCGCTGCATCCATGTAAGA 60.815 55.000 7.64 0.00 0.00 2.10
295 296 1.650912 GGCGCTGCATCCATGTAAG 59.349 57.895 7.64 0.00 0.00 2.34
296 297 1.823470 GGGCGCTGCATCCATGTAA 60.823 57.895 7.64 0.00 0.00 2.41
297 298 2.203195 GGGCGCTGCATCCATGTA 60.203 61.111 7.64 0.00 0.00 2.29
298 299 4.119363 AGGGCGCTGCATCCATGT 62.119 61.111 7.64 0.00 0.00 3.21
299 300 3.592814 CAGGGCGCTGCATCCATG 61.593 66.667 18.62 7.92 0.00 3.66
311 312 2.985512 CTAGACGATGGCAGCAGGGC 62.986 65.000 2.73 0.00 43.73 5.19
312 313 1.068753 CTAGACGATGGCAGCAGGG 59.931 63.158 2.73 0.00 0.00 4.45
313 314 0.031857 CTCTAGACGATGGCAGCAGG 59.968 60.000 2.73 0.00 0.00 4.85
314 315 0.597118 GCTCTAGACGATGGCAGCAG 60.597 60.000 2.73 0.00 0.00 4.24
315 316 1.439228 GCTCTAGACGATGGCAGCA 59.561 57.895 2.73 0.00 0.00 4.41
316 317 1.300542 GGCTCTAGACGATGGCAGC 60.301 63.158 0.00 0.00 0.00 5.25
317 318 0.031857 CTGGCTCTAGACGATGGCAG 59.968 60.000 15.79 15.79 44.31 4.85
318 319 0.684479 ACTGGCTCTAGACGATGGCA 60.684 55.000 5.93 5.93 0.00 4.92
319 320 0.031449 GACTGGCTCTAGACGATGGC 59.969 60.000 0.00 0.00 0.00 4.40
320 321 1.393603 TGACTGGCTCTAGACGATGG 58.606 55.000 0.00 0.00 0.00 3.51
321 322 2.288091 CCATGACTGGCTCTAGACGATG 60.288 54.545 0.00 0.00 35.23 3.84
322 323 1.959985 CCATGACTGGCTCTAGACGAT 59.040 52.381 0.00 0.00 35.23 3.73
323 324 1.393603 CCATGACTGGCTCTAGACGA 58.606 55.000 0.00 0.00 35.23 4.20
324 325 0.387202 CCCATGACTGGCTCTAGACG 59.613 60.000 0.00 0.00 41.64 4.18
325 326 0.755686 CCCCATGACTGGCTCTAGAC 59.244 60.000 0.00 0.00 41.64 2.59
326 327 1.050988 GCCCCATGACTGGCTCTAGA 61.051 60.000 12.07 0.00 44.46 2.43
327 328 1.449353 GCCCCATGACTGGCTCTAG 59.551 63.158 12.07 0.00 44.46 2.43
328 329 3.647367 GCCCCATGACTGGCTCTA 58.353 61.111 12.07 0.00 44.46 2.43
395 396 4.659874 GAACAACGGCGTGCCACG 62.660 66.667 15.70 13.95 45.88 4.94
396 397 4.659874 CGAACAACGGCGTGCCAC 62.660 66.667 15.70 5.37 38.46 5.01
402 403 3.537316 CGTGACACGAACAACGGCG 62.537 63.158 23.39 4.80 46.05 6.46
403 404 2.244382 CGTGACACGAACAACGGC 59.756 61.111 23.39 0.00 46.05 5.68
404 405 1.545614 CTCCGTGACACGAACAACGG 61.546 60.000 28.83 10.72 46.05 4.44
405 406 0.868602 ACTCCGTGACACGAACAACG 60.869 55.000 28.83 11.17 46.05 4.10
406 407 0.575390 CACTCCGTGACACGAACAAC 59.425 55.000 28.83 0.00 46.05 3.32
407 408 0.528901 CCACTCCGTGACACGAACAA 60.529 55.000 28.83 10.32 46.05 2.83
408 409 1.066752 CCACTCCGTGACACGAACA 59.933 57.895 28.83 11.29 46.05 3.18
409 410 2.308039 GCCACTCCGTGACACGAAC 61.308 63.158 28.83 7.69 46.05 3.95
410 411 2.028484 GCCACTCCGTGACACGAA 59.972 61.111 28.83 8.43 46.05 3.85
411 412 2.910479 AGCCACTCCGTGACACGA 60.910 61.111 28.83 13.76 46.05 4.35
412 413 2.734723 CAGCCACTCCGTGACACG 60.735 66.667 21.02 21.02 42.11 4.49
413 414 1.664965 GTCAGCCACTCCGTGACAC 60.665 63.158 0.00 0.00 40.34 3.67
414 415 2.131067 TGTCAGCCACTCCGTGACA 61.131 57.895 0.32 0.32 46.43 3.58
415 416 1.664965 GTGTCAGCCACTCCGTGAC 60.665 63.158 0.00 0.00 41.11 3.67
416 417 2.734591 GTGTCAGCCACTCCGTGA 59.265 61.111 0.00 0.00 41.11 4.35
417 418 2.357517 GGTGTCAGCCACTCCGTG 60.358 66.667 0.00 0.00 43.94 4.94
420 421 2.048127 GTCGGTGTCAGCCACTCC 60.048 66.667 0.00 0.00 43.94 3.85
421 422 0.946221 CAAGTCGGTGTCAGCCACTC 60.946 60.000 2.67 0.00 43.94 3.51
422 423 1.069765 CAAGTCGGTGTCAGCCACT 59.930 57.895 0.00 0.00 43.94 4.00
423 424 2.607892 GCAAGTCGGTGTCAGCCAC 61.608 63.158 0.00 0.00 43.74 5.01
424 425 1.468506 TAGCAAGTCGGTGTCAGCCA 61.469 55.000 0.00 0.00 0.00 4.75
425 426 1.014564 GTAGCAAGTCGGTGTCAGCC 61.015 60.000 0.00 0.00 0.00 4.85
426 427 0.319555 TGTAGCAAGTCGGTGTCAGC 60.320 55.000 0.00 0.00 0.00 4.26
427 428 1.670087 CCTGTAGCAAGTCGGTGTCAG 60.670 57.143 0.00 0.00 0.00 3.51
428 429 0.317160 CCTGTAGCAAGTCGGTGTCA 59.683 55.000 0.00 0.00 0.00 3.58
429 430 0.317479 ACCTGTAGCAAGTCGGTGTC 59.683 55.000 0.00 0.00 0.00 3.67
430 431 0.756903 AACCTGTAGCAAGTCGGTGT 59.243 50.000 0.00 0.00 0.00 4.16
431 432 1.429463 GAACCTGTAGCAAGTCGGTG 58.571 55.000 0.00 0.00 0.00 4.94
432 433 0.038526 CGAACCTGTAGCAAGTCGGT 60.039 55.000 0.00 0.00 0.00 4.69
433 434 1.352156 GCGAACCTGTAGCAAGTCGG 61.352 60.000 0.00 0.00 0.00 4.79
434 435 0.388649 AGCGAACCTGTAGCAAGTCG 60.389 55.000 0.00 0.00 0.00 4.18
435 436 1.351153 GAGCGAACCTGTAGCAAGTC 58.649 55.000 0.00 0.00 0.00 3.01
436 437 0.037232 GGAGCGAACCTGTAGCAAGT 60.037 55.000 0.00 0.00 0.00 3.16
437 438 1.078759 CGGAGCGAACCTGTAGCAAG 61.079 60.000 0.00 0.00 0.00 4.01
438 439 1.080093 CGGAGCGAACCTGTAGCAA 60.080 57.895 0.00 0.00 0.00 3.91
439 440 2.571757 CGGAGCGAACCTGTAGCA 59.428 61.111 0.00 0.00 0.00 3.49
440 441 2.202756 CCGGAGCGAACCTGTAGC 60.203 66.667 0.00 0.00 0.00 3.58
441 442 2.280823 GACCCGGAGCGAACCTGTAG 62.281 65.000 0.73 0.00 0.00 2.74
442 443 2.283388 ACCCGGAGCGAACCTGTA 60.283 61.111 0.73 0.00 0.00 2.74
443 444 3.692406 GACCCGGAGCGAACCTGT 61.692 66.667 0.73 0.00 0.00 4.00
444 445 4.796231 CGACCCGGAGCGAACCTG 62.796 72.222 0.73 0.00 0.00 4.00
468 469 4.760047 CCACGCCCTTGGAGTCGG 62.760 72.222 0.00 0.00 39.24 4.79
486 487 1.407258 GTAGCTACAGTGCCTCAGAGG 59.593 57.143 19.15 12.81 38.80 3.69
487 488 1.064803 CGTAGCTACAGTGCCTCAGAG 59.935 57.143 23.21 0.00 0.00 3.35
488 489 1.095600 CGTAGCTACAGTGCCTCAGA 58.904 55.000 23.21 0.00 0.00 3.27
489 490 3.631714 CGTAGCTACAGTGCCTCAG 57.368 57.895 23.21 0.14 0.00 3.35
512 513 4.760047 CTGTCGTCCCGGCCAAGG 62.760 72.222 2.24 2.18 0.00 3.61
513 514 2.725203 TTTCTGTCGTCCCGGCCAAG 62.725 60.000 2.24 0.00 0.00 3.61
514 515 2.809307 TTTCTGTCGTCCCGGCCAA 61.809 57.895 2.24 0.00 0.00 4.52
515 516 3.235481 TTTCTGTCGTCCCGGCCA 61.235 61.111 2.24 0.00 0.00 5.36
516 517 2.741211 GTTTCTGTCGTCCCGGCC 60.741 66.667 0.00 0.00 0.00 6.13
517 518 2.029964 TGTTTCTGTCGTCCCGGC 59.970 61.111 0.00 0.00 0.00 6.13
518 519 0.944311 CAGTGTTTCTGTCGTCCCGG 60.944 60.000 0.00 0.00 39.17 5.73
519 520 2.517598 CAGTGTTTCTGTCGTCCCG 58.482 57.895 0.00 0.00 39.17 5.14
528 529 2.287427 CGGACGTGACTACAGTGTTTCT 60.287 50.000 0.00 0.00 0.00 2.52
529 530 2.049228 CGGACGTGACTACAGTGTTTC 58.951 52.381 0.00 0.00 0.00 2.78
530 531 1.866880 GCGGACGTGACTACAGTGTTT 60.867 52.381 0.00 0.00 0.00 2.83
531 532 0.318445 GCGGACGTGACTACAGTGTT 60.318 55.000 0.00 0.00 0.00 3.32
532 533 1.170919 AGCGGACGTGACTACAGTGT 61.171 55.000 0.00 0.00 0.00 3.55
533 534 0.454620 GAGCGGACGTGACTACAGTG 60.455 60.000 0.00 0.00 0.00 3.66
534 535 1.874562 GAGCGGACGTGACTACAGT 59.125 57.895 0.00 0.00 0.00 3.55
535 536 1.226046 CGAGCGGACGTGACTACAG 60.226 63.158 0.00 0.00 0.00 2.74
536 537 1.904852 GACGAGCGGACGTGACTACA 61.905 60.000 10.77 0.00 46.52 2.74
537 538 1.225963 GACGAGCGGACGTGACTAC 60.226 63.158 10.77 0.00 46.52 2.73
538 539 2.733671 CGACGAGCGGACGTGACTA 61.734 63.158 10.77 0.00 46.52 2.59
539 540 4.086178 CGACGAGCGGACGTGACT 62.086 66.667 10.77 0.00 46.52 3.41
563 564 2.143419 AGATGATCGGACAGCCCCC 61.143 63.158 0.00 0.00 0.00 5.40
564 565 1.070445 CAGATGATCGGACAGCCCC 59.930 63.158 0.00 0.00 0.00 5.80
565 566 1.070445 CCAGATGATCGGACAGCCC 59.930 63.158 0.00 0.00 0.00 5.19
566 567 1.596477 GCCAGATGATCGGACAGCC 60.596 63.158 7.36 0.00 0.00 4.85
567 568 1.596477 GGCCAGATGATCGGACAGC 60.596 63.158 0.00 0.00 0.00 4.40
568 569 1.300465 CGGCCAGATGATCGGACAG 60.300 63.158 2.24 0.32 0.00 3.51
569 570 2.796193 CCGGCCAGATGATCGGACA 61.796 63.158 2.24 0.00 44.69 4.02
570 571 2.029666 CCGGCCAGATGATCGGAC 59.970 66.667 2.24 3.76 44.69 4.79
571 572 3.928779 GCCGGCCAGATGATCGGA 61.929 66.667 18.11 0.00 44.69 4.55
572 573 4.996434 GGCCGGCCAGATGATCGG 62.996 72.222 40.73 0.00 44.70 4.18
573 574 3.933722 AGGCCGGCCAGATGATCG 61.934 66.667 45.13 0.00 38.92 3.69
574 575 2.281345 CAGGCCGGCCAGATGATC 60.281 66.667 45.13 17.82 38.92 2.92
575 576 2.769621 TCAGGCCGGCCAGATGAT 60.770 61.111 45.13 23.19 38.92 2.45
576 577 3.473647 CTCAGGCCGGCCAGATGA 61.474 66.667 45.13 35.94 38.92 2.92
608 609 3.365265 CACAAGGCTTGACCCGGC 61.365 66.667 32.50 0.00 40.58 6.13
609 610 3.365265 GCACAAGGCTTGACCCGG 61.365 66.667 32.50 16.30 40.58 5.73
610 611 3.365265 GGCACAAGGCTTGACCCG 61.365 66.667 32.50 17.76 44.01 5.28
611 612 2.991540 GGGCACAAGGCTTGACCC 60.992 66.667 32.23 32.23 44.01 4.46
612 613 2.991540 GGGGCACAAGGCTTGACC 60.992 66.667 32.50 28.56 44.01 4.02
613 614 3.365265 CGGGGCACAAGGCTTGAC 61.365 66.667 32.50 22.23 44.01 3.18
687 688 0.885596 TAAAACGACGGGGTGGCAAG 60.886 55.000 0.00 0.00 0.00 4.01
688 689 0.885596 CTAAAACGACGGGGTGGCAA 60.886 55.000 0.00 0.00 0.00 4.52
689 690 1.301874 CTAAAACGACGGGGTGGCA 60.302 57.895 0.00 0.00 0.00 4.92
690 691 0.603439 TTCTAAAACGACGGGGTGGC 60.603 55.000 0.00 0.00 0.00 5.01
691 692 1.881591 TTTCTAAAACGACGGGGTGG 58.118 50.000 0.00 0.00 0.00 4.61
692 693 4.223659 CAATTTTCTAAAACGACGGGGTG 58.776 43.478 0.00 0.00 0.00 4.61
693 694 3.304861 GCAATTTTCTAAAACGACGGGGT 60.305 43.478 0.00 0.00 0.00 4.95
694 695 3.057806 AGCAATTTTCTAAAACGACGGGG 60.058 43.478 0.00 0.00 0.00 5.73
695 696 4.155310 AGCAATTTTCTAAAACGACGGG 57.845 40.909 0.00 0.00 0.00 5.28
696 697 5.106830 ACCTAGCAATTTTCTAAAACGACGG 60.107 40.000 0.00 0.00 0.00 4.79
697 698 5.788531 CACCTAGCAATTTTCTAAAACGACG 59.211 40.000 0.00 0.00 0.00 5.12
698 699 6.577427 CACACCTAGCAATTTTCTAAAACGAC 59.423 38.462 0.00 0.00 0.00 4.34
699 700 6.293735 CCACACCTAGCAATTTTCTAAAACGA 60.294 38.462 0.00 0.00 0.00 3.85
700 701 5.856455 CCACACCTAGCAATTTTCTAAAACG 59.144 40.000 0.00 0.00 0.00 3.60
701 702 6.977213 TCCACACCTAGCAATTTTCTAAAAC 58.023 36.000 0.00 0.00 0.00 2.43
702 703 7.669722 AGATCCACACCTAGCAATTTTCTAAAA 59.330 33.333 0.00 0.00 0.00 1.52
703 704 7.175104 AGATCCACACCTAGCAATTTTCTAAA 58.825 34.615 0.00 0.00 0.00 1.85
704 705 6.721318 AGATCCACACCTAGCAATTTTCTAA 58.279 36.000 0.00 0.00 0.00 2.10
705 706 6.313519 AGATCCACACCTAGCAATTTTCTA 57.686 37.500 0.00 0.00 0.00 2.10
706 707 5.184892 AGATCCACACCTAGCAATTTTCT 57.815 39.130 0.00 0.00 0.00 2.52
707 708 5.644644 CAAGATCCACACCTAGCAATTTTC 58.355 41.667 0.00 0.00 0.00 2.29
708 709 4.082026 GCAAGATCCACACCTAGCAATTTT 60.082 41.667 0.00 0.00 0.00 1.82
709 710 3.445096 GCAAGATCCACACCTAGCAATTT 59.555 43.478 0.00 0.00 0.00 1.82
710 711 3.019564 GCAAGATCCACACCTAGCAATT 58.980 45.455 0.00 0.00 0.00 2.32
711 712 2.648059 GCAAGATCCACACCTAGCAAT 58.352 47.619 0.00 0.00 0.00 3.56
712 713 1.340017 GGCAAGATCCACACCTAGCAA 60.340 52.381 0.00 0.00 0.00 3.91
713 714 0.253044 GGCAAGATCCACACCTAGCA 59.747 55.000 0.00 0.00 0.00 3.49
714 715 0.464554 GGGCAAGATCCACACCTAGC 60.465 60.000 0.00 0.00 0.00 3.42
715 716 0.181350 GGGGCAAGATCCACACCTAG 59.819 60.000 0.00 0.00 0.00 3.02
716 717 1.279025 GGGGGCAAGATCCACACCTA 61.279 60.000 0.00 0.00 0.00 3.08
717 718 2.616458 GGGGGCAAGATCCACACCT 61.616 63.158 0.00 0.00 0.00 4.00
718 719 2.043953 GGGGGCAAGATCCACACC 60.044 66.667 0.00 0.00 0.00 4.16
719 720 2.438434 CGGGGGCAAGATCCACAC 60.438 66.667 0.00 0.00 0.00 3.82
720 721 2.609299 TCGGGGGCAAGATCCACA 60.609 61.111 0.00 0.00 0.00 4.17
721 722 2.124695 GTCGGGGGCAAGATCCAC 60.125 66.667 0.00 0.00 0.00 4.02
722 723 2.609299 TGTCGGGGGCAAGATCCA 60.609 61.111 0.00 0.00 0.00 3.41
723 724 2.124695 GTGTCGGGGGCAAGATCC 60.125 66.667 0.00 0.00 0.00 3.36
724 725 1.002624 TTGTGTCGGGGGCAAGATC 60.003 57.895 0.00 0.00 0.00 2.75
725 726 1.002134 CTTGTGTCGGGGGCAAGAT 60.002 57.895 0.00 0.00 41.31 2.40
726 727 2.429930 CTTGTGTCGGGGGCAAGA 59.570 61.111 0.00 0.00 41.31 3.02
727 728 2.672996 CCTTGTGTCGGGGGCAAG 60.673 66.667 0.00 0.00 39.26 4.01
728 729 4.966787 GCCTTGTGTCGGGGGCAA 62.967 66.667 0.00 0.00 43.59 4.52
731 732 3.953775 AGTGCCTTGTGTCGGGGG 61.954 66.667 0.00 0.00 0.00 5.40
732 733 2.669569 CAGTGCCTTGTGTCGGGG 60.670 66.667 0.00 0.00 0.00 5.73
733 734 3.357079 GCAGTGCCTTGTGTCGGG 61.357 66.667 2.85 0.00 0.00 5.14
734 735 3.716006 CGCAGTGCCTTGTGTCGG 61.716 66.667 10.11 0.00 0.00 4.79
735 736 3.716006 CCGCAGTGCCTTGTGTCG 61.716 66.667 10.11 0.00 0.00 4.35
736 737 2.280797 TCCGCAGTGCCTTGTGTC 60.281 61.111 10.11 0.00 0.00 3.67
737 738 2.591715 GTCCGCAGTGCCTTGTGT 60.592 61.111 10.11 0.00 0.00 3.72
738 739 3.716006 CGTCCGCAGTGCCTTGTG 61.716 66.667 10.11 0.00 0.00 3.33
739 740 3.923864 TCGTCCGCAGTGCCTTGT 61.924 61.111 10.11 0.00 0.00 3.16
740 741 3.414700 GTCGTCCGCAGTGCCTTG 61.415 66.667 10.11 0.00 0.00 3.61
750 751 2.527100 AGAAAATAAGAGCGTCGTCCG 58.473 47.619 0.00 0.00 40.40 4.79
751 752 3.481388 CGTAGAAAATAAGAGCGTCGTCC 59.519 47.826 0.00 0.00 0.00 4.79
752 753 4.337763 TCGTAGAAAATAAGAGCGTCGTC 58.662 43.478 0.00 0.00 0.00 4.20
753 754 4.142730 ACTCGTAGAAAATAAGAGCGTCGT 60.143 41.667 0.00 0.00 34.09 4.34
754 755 4.341099 ACTCGTAGAAAATAAGAGCGTCG 58.659 43.478 0.00 0.00 34.09 5.12
755 756 4.433945 CGACTCGTAGAAAATAAGAGCGTC 59.566 45.833 0.00 0.00 34.09 5.19
756 757 4.142730 ACGACTCGTAGAAAATAAGAGCGT 60.143 41.667 1.16 11.26 38.73 5.07
757 758 4.341099 ACGACTCGTAGAAAATAAGAGCG 58.659 43.478 1.16 10.44 38.73 5.03
758 759 7.565431 GCATTACGACTCGTAGAAAATAAGAGC 60.565 40.741 11.02 2.96 43.21 4.09
759 760 7.644551 AGCATTACGACTCGTAGAAAATAAGAG 59.355 37.037 11.02 0.00 43.21 2.85
760 761 7.478322 AGCATTACGACTCGTAGAAAATAAGA 58.522 34.615 11.02 0.00 43.21 2.10
761 762 7.681125 AGCATTACGACTCGTAGAAAATAAG 57.319 36.000 11.02 0.00 43.21 1.73
762 763 7.645340 GGTAGCATTACGACTCGTAGAAAATAA 59.355 37.037 11.02 0.00 43.21 1.40
763 764 7.134815 GGTAGCATTACGACTCGTAGAAAATA 58.865 38.462 11.02 0.00 43.21 1.40
764 765 5.975939 GGTAGCATTACGACTCGTAGAAAAT 59.024 40.000 11.02 1.95 43.21 1.82
765 766 5.335127 GGTAGCATTACGACTCGTAGAAAA 58.665 41.667 11.02 0.00 43.21 2.29
766 767 4.494690 CGGTAGCATTACGACTCGTAGAAA 60.495 45.833 11.02 0.00 43.21 2.52
767 768 3.001634 CGGTAGCATTACGACTCGTAGAA 59.998 47.826 11.02 0.61 43.21 2.10
768 769 2.541346 CGGTAGCATTACGACTCGTAGA 59.459 50.000 11.02 4.18 43.21 2.59
769 770 2.349249 CCGGTAGCATTACGACTCGTAG 60.349 54.545 11.02 2.92 43.21 3.51
770 771 1.599071 CCGGTAGCATTACGACTCGTA 59.401 52.381 7.22 7.22 41.54 3.43
771 772 0.379669 CCGGTAGCATTACGACTCGT 59.620 55.000 9.45 9.45 44.35 4.18
772 773 0.659427 TCCGGTAGCATTACGACTCG 59.341 55.000 0.00 0.00 0.00 4.18
773 774 1.945394 TCTCCGGTAGCATTACGACTC 59.055 52.381 0.00 0.00 0.00 3.36
774 775 2.048444 TCTCCGGTAGCATTACGACT 57.952 50.000 0.00 0.00 0.00 4.18
775 776 2.728922 CTTCTCCGGTAGCATTACGAC 58.271 52.381 0.00 0.00 0.00 4.34
776 777 1.066605 GCTTCTCCGGTAGCATTACGA 59.933 52.381 17.10 0.00 36.17 3.43
777 778 1.488527 GCTTCTCCGGTAGCATTACG 58.511 55.000 17.10 0.00 36.17 3.18
778 779 1.202382 ACGCTTCTCCGGTAGCATTAC 60.202 52.381 20.23 0.00 35.94 1.89
810 811 2.927580 GCACCTTGTCGGAGTCGGA 61.928 63.158 0.00 0.00 36.95 4.55
823 861 2.588856 GATCTAAACCGCCGGCACCT 62.589 60.000 28.98 10.00 0.00 4.00
831 869 1.191647 CGGCATTACGATCTAAACCGC 59.808 52.381 12.37 5.09 35.47 5.68
832 870 1.191647 GCGGCATTACGATCTAAACCG 59.808 52.381 16.55 16.55 42.19 4.44
833 871 1.529865 GGCGGCATTACGATCTAAACC 59.470 52.381 3.07 0.00 35.47 3.27
834 872 2.206750 TGGCGGCATTACGATCTAAAC 58.793 47.619 7.97 0.00 35.47 2.01
835 873 2.605837 TGGCGGCATTACGATCTAAA 57.394 45.000 7.97 0.00 35.47 1.85
836 874 2.683968 GATGGCGGCATTACGATCTAA 58.316 47.619 26.52 0.00 35.47 2.10
837 875 1.402325 CGATGGCGGCATTACGATCTA 60.402 52.381 26.52 0.00 35.47 1.98
838 876 0.667487 CGATGGCGGCATTACGATCT 60.667 55.000 26.52 0.59 35.47 2.75
839 877 0.944311 ACGATGGCGGCATTACGATC 60.944 55.000 30.75 16.80 43.17 3.69
840 878 0.531974 AACGATGGCGGCATTACGAT 60.532 50.000 30.75 20.73 43.17 3.73
841 879 0.102663 TAACGATGGCGGCATTACGA 59.897 50.000 30.75 14.63 43.17 3.43
842 880 0.931702 TTAACGATGGCGGCATTACG 59.068 50.000 26.52 25.64 43.17 3.18
843 881 3.619233 ATTTAACGATGGCGGCATTAC 57.381 42.857 26.52 13.11 43.17 1.89
844 882 5.932883 TGTATATTTAACGATGGCGGCATTA 59.067 36.000 26.52 12.57 43.17 1.90
845 883 4.757657 TGTATATTTAACGATGGCGGCATT 59.242 37.500 26.52 13.67 43.17 3.56
846 884 4.320023 TGTATATTTAACGATGGCGGCAT 58.680 39.130 26.11 26.11 43.17 4.40
847 885 3.729966 TGTATATTTAACGATGGCGGCA 58.270 40.909 16.34 16.34 43.17 5.69
848 886 4.939509 ATGTATATTTAACGATGGCGGC 57.060 40.909 0.00 0.00 43.17 6.53
849 887 6.035650 CCTGTATGTATATTTAACGATGGCGG 59.964 42.308 0.00 0.00 43.17 6.13
869 907 0.320374 CTTTGCCTGTCCGACCTGTA 59.680 55.000 0.00 0.00 0.00 2.74
870 908 1.071471 CTTTGCCTGTCCGACCTGT 59.929 57.895 0.00 0.00 0.00 4.00
872 910 1.674057 CTCTTTGCCTGTCCGACCT 59.326 57.895 0.00 0.00 0.00 3.85
873 911 2.035442 GCTCTTTGCCTGTCCGACC 61.035 63.158 0.00 0.00 35.15 4.79
874 912 2.383527 CGCTCTTTGCCTGTCCGAC 61.384 63.158 0.00 0.00 38.78 4.79
875 913 2.048222 CGCTCTTTGCCTGTCCGA 60.048 61.111 0.00 0.00 38.78 4.55
897 935 2.462889 GGTTAATCGCCGTGTCGAATA 58.537 47.619 0.00 0.00 42.15 1.75
909 947 1.293924 CTGCTGCAGAGGGTTAATCG 58.706 55.000 24.88 0.00 32.44 3.34
913 951 0.036010 GAAGCTGCTGCAGAGGGTTA 60.036 55.000 32.30 0.00 42.74 2.85
919 957 0.179116 GAGATCGAAGCTGCTGCAGA 60.179 55.000 32.30 12.35 42.74 4.26
920 958 1.152989 GGAGATCGAAGCTGCTGCAG 61.153 60.000 24.80 24.80 42.74 4.41
921 959 1.153489 GGAGATCGAAGCTGCTGCA 60.153 57.895 18.42 0.88 42.74 4.41
923 961 2.974845 CAGGAGATCGAAGCTGCTG 58.025 57.895 20.07 20.07 43.65 4.41
924 962 1.143620 GCAGGAGATCGAAGCTGCT 59.856 57.895 6.82 6.82 34.12 4.24
1192 1235 2.125552 CGTGATTCTGGCGAGCCA 60.126 61.111 16.67 16.67 45.02 4.75
1213 1256 1.234615 GCGGCTTGCTTGAGGTTGTA 61.235 55.000 0.00 0.00 41.73 2.41
1215 1258 2.256461 GCGGCTTGCTTGAGGTTG 59.744 61.111 0.00 0.00 41.73 3.77
1293 1339 4.521062 CTCAGGGCCGCCTCGAAG 62.521 72.222 9.86 0.00 0.00 3.79
1317 1363 2.684843 CCGCTGCTGGACTTTCTGC 61.685 63.158 4.82 0.00 0.00 4.26
1347 1393 2.276116 GGAGGTGACCTGTCGCTCA 61.276 63.158 9.89 0.00 39.85 4.26
1381 1430 3.149196 CAAATGTACCACCAGCAGAAGT 58.851 45.455 0.00 0.00 0.00 3.01
1384 1433 1.533625 GCAAATGTACCACCAGCAGA 58.466 50.000 0.00 0.00 0.00 4.26
1407 1456 3.129502 CCGGTGCACTGCTCATGG 61.130 66.667 20.76 1.31 0.00 3.66
1447 1496 1.424240 CATGCGACAGAAGCTGCTG 59.576 57.895 20.95 20.95 41.63 4.41
1448 1497 1.744368 CCATGCGACAGAAGCTGCT 60.744 57.895 0.00 0.00 34.37 4.24
1449 1498 1.300971 TTCCATGCGACAGAAGCTGC 61.301 55.000 0.00 0.00 34.37 5.25
1450 1499 0.445436 GTTCCATGCGACAGAAGCTG 59.555 55.000 0.00 0.00 37.52 4.24
1461 1510 1.084370 CCTCGACTTCCGTTCCATGC 61.084 60.000 0.00 0.00 39.75 4.06
1491 1540 1.674651 CTCCCTCTCGTCCACGACA 60.675 63.158 0.00 0.00 44.22 4.35
1644 1693 2.607750 TCTTCTTCCGCCTGGCCT 60.608 61.111 14.12 0.00 34.14 5.19
1645 1694 2.124942 CTCTTCTTCCGCCTGGCC 60.125 66.667 14.12 0.00 34.14 5.36
1674 1723 4.899239 CGATCGGCCTCCACTGCC 62.899 72.222 7.38 0.00 45.70 4.85
1725 1774 4.739716 CCAACAACAAACATCAGCAAGTAC 59.260 41.667 0.00 0.00 0.00 2.73
1813 1862 1.471684 CAGTGACCAGTAGTCCGGTAC 59.528 57.143 0.00 0.00 45.68 3.34
1815 1864 0.898789 CCAGTGACCAGTAGTCCGGT 60.899 60.000 0.00 0.00 45.68 5.28
1816 1865 1.605058 CCCAGTGACCAGTAGTCCGG 61.605 65.000 0.00 0.00 45.68 5.14
1817 1866 1.890894 CCCAGTGACCAGTAGTCCG 59.109 63.158 0.00 0.00 45.68 4.79
1819 1868 0.037232 GTGCCCAGTGACCAGTAGTC 60.037 60.000 0.00 0.00 46.51 2.59
1820 1869 0.471971 AGTGCCCAGTGACCAGTAGT 60.472 55.000 0.00 0.00 0.00 2.73
1828 1932 1.631071 TTCACACCAGTGCCCAGTGA 61.631 55.000 4.72 3.37 45.49 3.41
1829 1933 0.751277 TTTCACACCAGTGCCCAGTG 60.751 55.000 0.00 0.00 45.49 3.66
1888 1992 2.620251 TTGTATCAGCCGGAATCTGG 57.380 50.000 5.05 3.14 32.63 3.86
1890 1994 4.101585 TCTGAATTGTATCAGCCGGAATCT 59.898 41.667 5.05 0.00 45.21 2.40
1897 2001 6.441093 TTCAACATCTGAATTGTATCAGCC 57.559 37.500 0.00 0.00 45.21 4.85
1906 2010 2.827921 GGTGGGCTTCAACATCTGAATT 59.172 45.455 0.00 0.00 43.20 2.17
1958 2062 7.281999 TGTCAAAATCAAACATTTCTTTTCCCC 59.718 33.333 0.00 0.00 0.00 4.81
2078 2304 4.286808 TCTGTGGATTTCAGGAATCACAGA 59.713 41.667 23.64 23.64 46.34 3.41
2079 2305 4.582869 TCTGTGGATTTCAGGAATCACAG 58.417 43.478 21.40 21.40 44.91 3.66
2122 2350 4.316205 AATGAAACCCGGTCTGTTTTTC 57.684 40.909 8.45 4.48 36.13 2.29
2251 2479 5.763204 TGATGCCTTCTTTCGTTTAGTCTTT 59.237 36.000 0.00 0.00 0.00 2.52
2279 2507 4.833478 AGCTCTCATAGTTTGGTGACAT 57.167 40.909 0.00 0.00 42.32 3.06
2281 2509 5.808030 GTCTAAGCTCTCATAGTTTGGTGAC 59.192 44.000 0.00 0.00 30.36 3.67
2300 2528 9.967451 TTATGGAAAATGATGTAGTTGGTCTAA 57.033 29.630 0.00 0.00 0.00 2.10
2301 2529 9.613428 CTTATGGAAAATGATGTAGTTGGTCTA 57.387 33.333 0.00 0.00 0.00 2.59
2334 2562 7.600065 TGGTAGACAGACAAATACTGTTACTC 58.400 38.462 0.00 0.00 46.57 2.59
2335 2563 7.534723 TGGTAGACAGACAAATACTGTTACT 57.465 36.000 0.00 0.00 46.57 2.24
2336 2564 8.773404 ATTGGTAGACAGACAAATACTGTTAC 57.227 34.615 0.00 0.00 46.57 2.50
2340 2568 7.063898 CACAGATTGGTAGACAGACAAATACTG 59.936 40.741 0.00 0.00 40.68 2.74
2430 2659 4.393155 AATCAGTGAGGCGCGGCA 62.393 61.111 34.94 12.69 0.00 5.69
2431 2660 3.869272 CAATCAGTGAGGCGCGGC 61.869 66.667 27.06 27.06 0.00 6.53
2432 2661 2.434884 ACAATCAGTGAGGCGCGG 60.435 61.111 8.83 0.00 0.00 6.46
2446 2695 9.772973 AATTATAGAAGACTGTACACAACACAA 57.227 29.630 0.00 0.00 33.45 3.33
2453 2702 9.880157 TTACCCAAATTATAGAAGACTGTACAC 57.120 33.333 0.00 0.00 0.00 2.90
2564 2813 2.182516 AGTGGGGATTAGGTGGAGAG 57.817 55.000 0.00 0.00 0.00 3.20
2643 2892 4.445453 TCAGGTGATATGATGTGTTGCTC 58.555 43.478 0.00 0.00 0.00 4.26
2673 2922 5.716228 AGTATGGCATTCATTGTTCCTTTCA 59.284 36.000 4.78 0.00 37.30 2.69
2710 2959 6.655003 GCCATTGCCTTACATAGTATGTGTAT 59.345 38.462 23.36 1.46 44.60 2.29
2718 2967 8.796475 CAATTAATAGCCATTGCCTTACATAGT 58.204 33.333 0.00 0.00 38.69 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.