Multiple sequence alignment - TraesCS7A01G181700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G181700 chr7A 100.000 2584 0 0 1 2584 136284739 136287322 0.000000e+00 4772
1 TraesCS7A01G181700 chr7A 89.778 225 20 2 107 328 166872729 166872953 4.210000e-73 285
2 TraesCS7A01G181700 chr1D 91.758 2184 160 15 410 2584 250223368 250225540 0.000000e+00 3018
3 TraesCS7A01G181700 chr1D 90.563 2183 179 18 413 2584 278102464 278100298 0.000000e+00 2865
4 TraesCS7A01G181700 chr7D 90.972 2182 181 12 410 2584 175933380 175931208 0.000000e+00 2924
5 TraesCS7A01G181700 chr7D 90.537 2198 177 23 406 2584 85019320 85021505 0.000000e+00 2878
6 TraesCS7A01G181700 chr7D 86.667 225 27 3 108 330 575219702 575219479 1.990000e-61 246
7 TraesCS7A01G181700 chr7D 86.036 222 27 4 110 330 433726631 433726849 4.300000e-58 235
8 TraesCS7A01G181700 chr4D 90.768 2188 180 16 410 2584 84467725 84465547 0.000000e+00 2902
9 TraesCS7A01G181700 chr4D 90.685 2190 179 19 410 2584 502108819 502106640 0.000000e+00 2891
10 TraesCS7A01G181700 chr2D 90.817 2178 182 15 410 2575 498273321 498275492 0.000000e+00 2898
11 TraesCS7A01G181700 chr2A 90.318 2200 187 14 396 2584 549959918 549957734 0.000000e+00 2859
12 TraesCS7A01G181700 chr2A 87.838 222 25 2 108 328 16010539 16010319 2.550000e-65 259
13 TraesCS7A01G181700 chr6D 90.411 2190 176 22 406 2583 325418871 325416704 0.000000e+00 2850
14 TraesCS7A01G181700 chr5D 87.838 222 25 2 110 330 163793598 163793378 2.550000e-65 259
15 TraesCS7A01G181700 chr5D 86.161 224 26 5 109 330 9283981 9284201 1.200000e-58 237
16 TraesCS7A01G181700 chr4A 87.556 225 25 3 111 332 47131462 47131238 9.170000e-65 257
17 TraesCS7A01G181700 chr3D 87.727 220 27 0 109 328 604874498 604874279 9.170000e-65 257
18 TraesCS7A01G181700 chr3D 86.283 226 27 3 106 328 547450307 547450531 2.570000e-60 243


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G181700 chr7A 136284739 136287322 2583 False 4772 4772 100.000 1 2584 1 chr7A.!!$F1 2583
1 TraesCS7A01G181700 chr1D 250223368 250225540 2172 False 3018 3018 91.758 410 2584 1 chr1D.!!$F1 2174
2 TraesCS7A01G181700 chr1D 278100298 278102464 2166 True 2865 2865 90.563 413 2584 1 chr1D.!!$R1 2171
3 TraesCS7A01G181700 chr7D 175931208 175933380 2172 True 2924 2924 90.972 410 2584 1 chr7D.!!$R1 2174
4 TraesCS7A01G181700 chr7D 85019320 85021505 2185 False 2878 2878 90.537 406 2584 1 chr7D.!!$F1 2178
5 TraesCS7A01G181700 chr4D 84465547 84467725 2178 True 2902 2902 90.768 410 2584 1 chr4D.!!$R1 2174
6 TraesCS7A01G181700 chr4D 502106640 502108819 2179 True 2891 2891 90.685 410 2584 1 chr4D.!!$R2 2174
7 TraesCS7A01G181700 chr2D 498273321 498275492 2171 False 2898 2898 90.817 410 2575 1 chr2D.!!$F1 2165
8 TraesCS7A01G181700 chr2A 549957734 549959918 2184 True 2859 2859 90.318 396 2584 1 chr2A.!!$R2 2188
9 TraesCS7A01G181700 chr6D 325416704 325418871 2167 True 2850 2850 90.411 406 2583 1 chr6D.!!$R1 2177

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
235 236 0.039618 GATTTGAAGTGGGGCTGGGA 59.960 55.0 0.0 0.0 0.0 4.37 F
239 240 0.044092 TGAAGTGGGGCTGGGATAGA 59.956 55.0 0.0 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1483 0.250793 TTGGGCTTCCGCGAATCTTA 59.749 50.0 8.23 0.0 36.88 2.10 R
1668 1690 0.685097 TGACTTGTGTAGTGCTCCCC 59.315 55.0 0.00 0.0 37.17 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.934023 TTTTTCAAAGGACACTAATATCCAGT 57.066 30.769 0.00 0.00 37.47 4.00
28 29 5.428253 TCAAAGGACACTAATATCCAGTGC 58.572 41.667 14.37 9.06 45.96 4.40
29 30 4.423625 AAGGACACTAATATCCAGTGCC 57.576 45.455 14.37 15.02 45.96 5.01
30 31 2.706190 AGGACACTAATATCCAGTGCCC 59.294 50.000 14.37 13.33 45.96 5.36
31 32 2.548067 GGACACTAATATCCAGTGCCCG 60.548 54.545 14.37 0.00 45.96 6.13
32 33 2.102588 GACACTAATATCCAGTGCCCGT 59.897 50.000 14.37 0.00 45.96 5.28
33 34 2.102588 ACACTAATATCCAGTGCCCGTC 59.897 50.000 14.37 0.00 45.96 4.79
34 35 1.340248 ACTAATATCCAGTGCCCGTCG 59.660 52.381 0.00 0.00 0.00 5.12
35 36 0.677288 TAATATCCAGTGCCCGTCGG 59.323 55.000 3.60 3.60 0.00 4.79
36 37 1.046472 AATATCCAGTGCCCGTCGGA 61.046 55.000 14.39 0.00 0.00 4.55
37 38 1.745320 ATATCCAGTGCCCGTCGGAC 61.745 60.000 14.39 0.11 0.00 4.79
47 48 4.883026 CGTCGGACACGGAATCTT 57.117 55.556 9.10 0.00 45.46 2.40
48 49 3.117589 CGTCGGACACGGAATCTTT 57.882 52.632 9.10 0.00 45.46 2.52
49 50 0.989890 CGTCGGACACGGAATCTTTC 59.010 55.000 9.10 0.00 45.46 2.62
50 51 1.667756 CGTCGGACACGGAATCTTTCA 60.668 52.381 9.10 0.00 45.46 2.69
51 52 1.725164 GTCGGACACGGAATCTTTCAC 59.275 52.381 2.62 0.00 41.39 3.18
52 53 1.616865 TCGGACACGGAATCTTTCACT 59.383 47.619 0.00 0.00 41.39 3.41
53 54 1.726791 CGGACACGGAATCTTTCACTG 59.273 52.381 0.00 0.00 36.18 3.66
54 55 2.076863 GGACACGGAATCTTTCACTGG 58.923 52.381 0.00 0.00 0.00 4.00
55 56 2.289444 GGACACGGAATCTTTCACTGGA 60.289 50.000 0.00 0.00 0.00 3.86
56 57 3.399330 GACACGGAATCTTTCACTGGAA 58.601 45.455 0.00 0.00 0.00 3.53
57 58 3.139077 ACACGGAATCTTTCACTGGAAC 58.861 45.455 0.00 0.00 31.35 3.62
58 59 2.157668 CACGGAATCTTTCACTGGAACG 59.842 50.000 0.00 0.00 31.35 3.95
59 60 2.036733 ACGGAATCTTTCACTGGAACGA 59.963 45.455 0.00 0.00 35.98 3.85
60 61 3.262420 CGGAATCTTTCACTGGAACGAT 58.738 45.455 0.00 0.00 42.02 3.73
61 62 3.062639 CGGAATCTTTCACTGGAACGATG 59.937 47.826 0.00 0.00 40.08 3.84
62 63 3.181506 GGAATCTTTCACTGGAACGATGC 60.182 47.826 0.00 0.00 40.08 3.91
63 64 2.839486 TCTTTCACTGGAACGATGCT 57.161 45.000 0.00 0.00 31.35 3.79
64 65 3.126001 TCTTTCACTGGAACGATGCTT 57.874 42.857 0.00 0.00 31.35 3.91
65 66 3.476552 TCTTTCACTGGAACGATGCTTT 58.523 40.909 0.00 0.00 31.35 3.51
66 67 3.498397 TCTTTCACTGGAACGATGCTTTC 59.502 43.478 0.00 0.00 31.35 2.62
67 68 2.839486 TCACTGGAACGATGCTTTCT 57.161 45.000 0.00 0.00 0.00 2.52
68 69 2.416747 TCACTGGAACGATGCTTTCTG 58.583 47.619 0.00 0.00 0.00 3.02
69 70 2.037121 TCACTGGAACGATGCTTTCTGA 59.963 45.455 0.00 0.00 0.00 3.27
70 71 3.005554 CACTGGAACGATGCTTTCTGAT 58.994 45.455 0.00 0.00 0.00 2.90
71 72 3.063180 CACTGGAACGATGCTTTCTGATC 59.937 47.826 0.00 0.00 0.00 2.92
72 73 2.270923 TGGAACGATGCTTTCTGATCG 58.729 47.619 0.00 0.00 45.58 3.69
73 74 2.094234 TGGAACGATGCTTTCTGATCGA 60.094 45.455 8.63 0.00 43.36 3.59
74 75 2.930040 GGAACGATGCTTTCTGATCGAA 59.070 45.455 8.63 0.00 43.36 3.71
75 76 3.242123 GGAACGATGCTTTCTGATCGAAC 60.242 47.826 8.63 0.00 43.36 3.95
76 77 1.920574 ACGATGCTTTCTGATCGAACG 59.079 47.619 8.63 0.00 43.36 3.95
77 78 2.185262 CGATGCTTTCTGATCGAACGA 58.815 47.619 0.00 0.00 43.36 3.85
78 79 2.598637 CGATGCTTTCTGATCGAACGAA 59.401 45.455 0.12 0.00 43.36 3.85
79 80 3.243877 CGATGCTTTCTGATCGAACGAAT 59.756 43.478 0.12 3.58 43.36 3.34
80 81 4.259970 CGATGCTTTCTGATCGAACGAATT 60.260 41.667 0.12 0.00 43.36 2.17
81 82 5.051708 CGATGCTTTCTGATCGAACGAATTA 60.052 40.000 0.12 0.00 43.36 1.40
82 83 5.450376 TGCTTTCTGATCGAACGAATTAC 57.550 39.130 0.12 0.00 0.00 1.89
83 84 5.168569 TGCTTTCTGATCGAACGAATTACT 58.831 37.500 0.12 0.00 0.00 2.24
84 85 5.637810 TGCTTTCTGATCGAACGAATTACTT 59.362 36.000 0.12 0.00 0.00 2.24
85 86 5.954349 GCTTTCTGATCGAACGAATTACTTG 59.046 40.000 0.12 0.00 0.00 3.16
86 87 6.401153 GCTTTCTGATCGAACGAATTACTTGT 60.401 38.462 0.12 0.00 0.00 3.16
87 88 7.416154 TTTCTGATCGAACGAATTACTTGTT 57.584 32.000 0.12 0.00 0.00 2.83
88 89 7.416154 TTCTGATCGAACGAATTACTTGTTT 57.584 32.000 0.12 0.00 0.00 2.83
89 90 7.045725 TCTGATCGAACGAATTACTTGTTTC 57.954 36.000 0.12 0.00 0.00 2.78
90 91 6.643360 TCTGATCGAACGAATTACTTGTTTCA 59.357 34.615 0.12 0.00 0.00 2.69
91 92 7.170151 TCTGATCGAACGAATTACTTGTTTCAA 59.830 33.333 0.12 0.00 0.00 2.69
92 93 7.067116 TGATCGAACGAATTACTTGTTTCAAC 58.933 34.615 0.12 0.00 0.00 3.18
93 94 5.740406 TCGAACGAATTACTTGTTTCAACC 58.260 37.500 0.00 0.00 0.00 3.77
94 95 4.605594 CGAACGAATTACTTGTTTCAACCG 59.394 41.667 0.00 0.00 0.00 4.44
95 96 5.488645 AACGAATTACTTGTTTCAACCGT 57.511 34.783 0.00 0.00 0.00 4.83
96 97 5.086888 ACGAATTACTTGTTTCAACCGTC 57.913 39.130 0.00 0.00 0.00 4.79
97 98 4.024641 ACGAATTACTTGTTTCAACCGTCC 60.025 41.667 0.00 0.00 0.00 4.79
98 99 4.212636 CGAATTACTTGTTTCAACCGTCCT 59.787 41.667 0.00 0.00 0.00 3.85
99 100 5.614013 CGAATTACTTGTTTCAACCGTCCTC 60.614 44.000 0.00 0.00 0.00 3.71
100 101 1.578583 ACTTGTTTCAACCGTCCTCG 58.421 50.000 0.00 0.00 0.00 4.63
101 102 1.134610 ACTTGTTTCAACCGTCCTCGT 60.135 47.619 0.00 0.00 35.01 4.18
102 103 1.260561 CTTGTTTCAACCGTCCTCGTG 59.739 52.381 0.00 0.00 35.01 4.35
103 104 0.176219 TGTTTCAACCGTCCTCGTGT 59.824 50.000 0.00 0.00 35.01 4.49
104 105 0.857287 GTTTCAACCGTCCTCGTGTC 59.143 55.000 0.00 0.00 35.01 3.67
105 106 0.249573 TTTCAACCGTCCTCGTGTCC 60.250 55.000 0.00 0.00 35.01 4.02
106 107 2.410638 TTCAACCGTCCTCGTGTCCG 62.411 60.000 0.00 0.00 35.01 4.79
107 108 2.595463 AACCGTCCTCGTGTCCGA 60.595 61.111 0.00 0.00 41.73 4.55
108 109 2.912624 AACCGTCCTCGTGTCCGAC 61.913 63.158 0.00 0.00 38.40 4.79
116 117 4.639824 CGTGTCCGACGGAAAAGA 57.360 55.556 20.26 0.00 44.85 2.52
117 118 2.889578 CGTGTCCGACGGAAAAGAA 58.110 52.632 20.26 0.00 44.85 2.52
118 119 1.425412 CGTGTCCGACGGAAAAGAAT 58.575 50.000 20.26 0.00 44.85 2.40
119 120 1.796459 CGTGTCCGACGGAAAAGAATT 59.204 47.619 20.26 0.00 44.85 2.17
120 121 2.988493 CGTGTCCGACGGAAAAGAATTA 59.012 45.455 20.26 0.00 44.85 1.40
121 122 3.615496 CGTGTCCGACGGAAAAGAATTAT 59.385 43.478 20.26 0.00 44.85 1.28
122 123 4.799949 CGTGTCCGACGGAAAAGAATTATA 59.200 41.667 20.26 0.00 44.85 0.98
123 124 5.461078 CGTGTCCGACGGAAAAGAATTATAT 59.539 40.000 20.26 0.00 44.85 0.86
124 125 6.638063 CGTGTCCGACGGAAAAGAATTATATA 59.362 38.462 20.26 0.00 44.85 0.86
125 126 7.167968 CGTGTCCGACGGAAAAGAATTATATAA 59.832 37.037 20.26 0.00 44.85 0.98
126 127 8.485591 GTGTCCGACGGAAAAGAATTATATAAG 58.514 37.037 20.26 0.00 31.38 1.73
127 128 8.415553 TGTCCGACGGAAAAGAATTATATAAGA 58.584 33.333 20.26 0.00 31.38 2.10
128 129 9.420551 GTCCGACGGAAAAGAATTATATAAGAT 57.579 33.333 20.26 0.00 31.38 2.40
129 130 9.635520 TCCGACGGAAAAGAATTATATAAGATC 57.364 33.333 15.79 2.67 0.00 2.75
130 131 9.419297 CCGACGGAAAAGAATTATATAAGATCA 57.581 33.333 8.64 0.00 0.00 2.92
146 147 4.904253 AGATCAGGTCTTACGAGTTAGC 57.096 45.455 0.00 0.00 31.47 3.09
147 148 4.270834 AGATCAGGTCTTACGAGTTAGCA 58.729 43.478 0.00 0.00 31.47 3.49
148 149 4.890581 AGATCAGGTCTTACGAGTTAGCAT 59.109 41.667 0.00 0.00 31.47 3.79
149 150 4.371855 TCAGGTCTTACGAGTTAGCATG 57.628 45.455 0.00 0.00 0.00 4.06
150 151 3.762288 TCAGGTCTTACGAGTTAGCATGT 59.238 43.478 0.00 0.00 0.00 3.21
151 152 3.859961 CAGGTCTTACGAGTTAGCATGTG 59.140 47.826 0.00 0.00 0.00 3.21
152 153 3.762288 AGGTCTTACGAGTTAGCATGTGA 59.238 43.478 0.00 0.00 0.00 3.58
153 154 4.106197 GGTCTTACGAGTTAGCATGTGAG 58.894 47.826 0.00 0.00 0.00 3.51
154 155 4.142447 GGTCTTACGAGTTAGCATGTGAGA 60.142 45.833 0.00 0.00 0.00 3.27
155 156 4.794246 GTCTTACGAGTTAGCATGTGAGAC 59.206 45.833 9.16 9.16 39.63 3.36
156 157 2.656560 ACGAGTTAGCATGTGAGACC 57.343 50.000 0.00 0.00 0.00 3.85
157 158 1.204941 ACGAGTTAGCATGTGAGACCC 59.795 52.381 0.00 0.00 0.00 4.46
158 159 1.204704 CGAGTTAGCATGTGAGACCCA 59.795 52.381 0.00 0.00 0.00 4.51
159 160 2.159043 CGAGTTAGCATGTGAGACCCAT 60.159 50.000 0.00 0.00 0.00 4.00
160 161 3.462021 GAGTTAGCATGTGAGACCCATC 58.538 50.000 0.00 0.00 0.00 3.51
161 162 2.171448 AGTTAGCATGTGAGACCCATCC 59.829 50.000 0.00 0.00 0.00 3.51
162 163 2.171448 GTTAGCATGTGAGACCCATCCT 59.829 50.000 0.00 0.00 0.00 3.24
163 164 2.180946 AGCATGTGAGACCCATCCTA 57.819 50.000 0.00 0.00 0.00 2.94
164 165 2.481441 AGCATGTGAGACCCATCCTAA 58.519 47.619 0.00 0.00 0.00 2.69
165 166 3.051581 AGCATGTGAGACCCATCCTAAT 58.948 45.455 0.00 0.00 0.00 1.73
166 167 3.144506 GCATGTGAGACCCATCCTAATG 58.855 50.000 0.00 0.00 0.00 1.90
182 183 6.505048 TCCTAATGGATGAGATGTGACATT 57.495 37.500 0.00 0.00 37.46 2.71
183 184 6.528321 TCCTAATGGATGAGATGTGACATTC 58.472 40.000 0.00 0.42 37.46 2.67
184 185 6.100134 TCCTAATGGATGAGATGTGACATTCA 59.900 38.462 0.00 6.25 37.46 2.57
185 186 6.940867 CCTAATGGATGAGATGTGACATTCAT 59.059 38.462 17.15 17.15 42.39 2.57
186 187 8.098912 CCTAATGGATGAGATGTGACATTCATA 58.901 37.037 17.15 8.41 40.50 2.15
187 188 9.498176 CTAATGGATGAGATGTGACATTCATAA 57.502 33.333 17.15 11.97 40.50 1.90
188 189 8.756486 AATGGATGAGATGTGACATTCATAAA 57.244 30.769 17.15 11.74 40.50 1.40
189 190 8.935614 ATGGATGAGATGTGACATTCATAAAT 57.064 30.769 17.15 12.87 39.87 1.40
190 191 8.161699 TGGATGAGATGTGACATTCATAAATG 57.838 34.615 17.15 0.00 46.42 2.32
191 192 7.994334 TGGATGAGATGTGACATTCATAAATGA 59.006 33.333 17.15 0.00 44.25 2.57
192 193 9.011095 GGATGAGATGTGACATTCATAAATGAT 57.989 33.333 17.15 2.35 44.25 2.45
198 199 9.955208 GATGTGACATTCATAAATGATAAAGCA 57.045 29.630 0.00 0.00 44.25 3.91
200 201 9.955208 TGTGACATTCATAAATGATAAAGCATC 57.045 29.630 0.00 0.00 44.25 3.91
213 214 9.723601 AATGATAAAGCATCTAATCTCTCCTTC 57.276 33.333 0.00 0.00 34.46 3.46
214 215 7.675062 TGATAAAGCATCTAATCTCTCCTTCC 58.325 38.462 0.00 0.00 34.46 3.46
215 216 7.512058 TGATAAAGCATCTAATCTCTCCTTCCT 59.488 37.037 0.00 0.00 34.46 3.36
216 217 5.549742 AAGCATCTAATCTCTCCTTCCTG 57.450 43.478 0.00 0.00 0.00 3.86
217 218 4.813809 AGCATCTAATCTCTCCTTCCTGA 58.186 43.478 0.00 0.00 0.00 3.86
218 219 5.405279 AGCATCTAATCTCTCCTTCCTGAT 58.595 41.667 0.00 0.00 0.00 2.90
219 220 5.845614 AGCATCTAATCTCTCCTTCCTGATT 59.154 40.000 0.00 0.00 34.16 2.57
220 221 6.329723 AGCATCTAATCTCTCCTTCCTGATTT 59.670 38.462 0.00 0.00 32.33 2.17
221 222 6.427547 GCATCTAATCTCTCCTTCCTGATTTG 59.572 42.308 0.00 0.00 32.33 2.32
222 223 7.688820 GCATCTAATCTCTCCTTCCTGATTTGA 60.689 40.741 0.00 0.00 36.05 2.69
223 224 7.739995 TCTAATCTCTCCTTCCTGATTTGAA 57.260 36.000 0.00 0.00 31.59 2.69
224 225 7.790027 TCTAATCTCTCCTTCCTGATTTGAAG 58.210 38.462 0.00 0.00 39.13 3.02
225 226 6.385766 AATCTCTCCTTCCTGATTTGAAGT 57.614 37.500 0.00 0.00 38.00 3.01
226 227 5.157940 TCTCTCCTTCCTGATTTGAAGTG 57.842 43.478 0.00 0.00 38.00 3.16
227 228 4.019860 TCTCTCCTTCCTGATTTGAAGTGG 60.020 45.833 0.00 0.00 38.00 4.00
228 229 3.009473 TCTCCTTCCTGATTTGAAGTGGG 59.991 47.826 0.00 0.00 38.00 4.61
229 230 2.041620 TCCTTCCTGATTTGAAGTGGGG 59.958 50.000 0.00 0.00 38.00 4.96
230 231 1.821136 CTTCCTGATTTGAAGTGGGGC 59.179 52.381 0.00 0.00 35.56 5.80
231 232 1.075601 TCCTGATTTGAAGTGGGGCT 58.924 50.000 0.00 0.00 0.00 5.19
232 233 1.180029 CCTGATTTGAAGTGGGGCTG 58.820 55.000 0.00 0.00 0.00 4.85
233 234 1.180029 CTGATTTGAAGTGGGGCTGG 58.820 55.000 0.00 0.00 0.00 4.85
234 235 0.251742 TGATTTGAAGTGGGGCTGGG 60.252 55.000 0.00 0.00 0.00 4.45
235 236 0.039618 GATTTGAAGTGGGGCTGGGA 59.960 55.000 0.00 0.00 0.00 4.37
236 237 0.712380 ATTTGAAGTGGGGCTGGGAT 59.288 50.000 0.00 0.00 0.00 3.85
237 238 1.377690 TTTGAAGTGGGGCTGGGATA 58.622 50.000 0.00 0.00 0.00 2.59
238 239 0.918983 TTGAAGTGGGGCTGGGATAG 59.081 55.000 0.00 0.00 0.00 2.08
239 240 0.044092 TGAAGTGGGGCTGGGATAGA 59.956 55.000 0.00 0.00 0.00 1.98
240 241 1.345422 TGAAGTGGGGCTGGGATAGAT 60.345 52.381 0.00 0.00 0.00 1.98
241 242 1.072965 GAAGTGGGGCTGGGATAGATG 59.927 57.143 0.00 0.00 0.00 2.90
242 243 1.073897 GTGGGGCTGGGATAGATGC 59.926 63.158 0.00 0.00 0.00 3.91
243 244 1.073474 TGGGGCTGGGATAGATGCT 60.073 57.895 0.00 0.00 0.00 3.79
244 245 0.698886 TGGGGCTGGGATAGATGCTT 60.699 55.000 0.00 0.00 0.00 3.91
245 246 0.480252 GGGGCTGGGATAGATGCTTT 59.520 55.000 0.00 0.00 0.00 3.51
246 247 1.613836 GGGCTGGGATAGATGCTTTG 58.386 55.000 0.00 0.00 0.00 2.77
247 248 1.133668 GGGCTGGGATAGATGCTTTGT 60.134 52.381 0.00 0.00 0.00 2.83
248 249 1.952296 GGCTGGGATAGATGCTTTGTG 59.048 52.381 0.00 0.00 0.00 3.33
249 250 2.421952 GGCTGGGATAGATGCTTTGTGA 60.422 50.000 0.00 0.00 0.00 3.58
250 251 3.484407 GCTGGGATAGATGCTTTGTGAT 58.516 45.455 0.00 0.00 0.00 3.06
251 252 3.887716 GCTGGGATAGATGCTTTGTGATT 59.112 43.478 0.00 0.00 0.00 2.57
252 253 4.340381 GCTGGGATAGATGCTTTGTGATTT 59.660 41.667 0.00 0.00 0.00 2.17
253 254 5.735354 GCTGGGATAGATGCTTTGTGATTTG 60.735 44.000 0.00 0.00 0.00 2.32
254 255 5.263599 TGGGATAGATGCTTTGTGATTTGT 58.736 37.500 0.00 0.00 0.00 2.83
255 256 6.422333 TGGGATAGATGCTTTGTGATTTGTA 58.578 36.000 0.00 0.00 0.00 2.41
256 257 6.889177 TGGGATAGATGCTTTGTGATTTGTAA 59.111 34.615 0.00 0.00 0.00 2.41
257 258 7.395772 TGGGATAGATGCTTTGTGATTTGTAAA 59.604 33.333 0.00 0.00 0.00 2.01
258 259 8.416329 GGGATAGATGCTTTGTGATTTGTAAAT 58.584 33.333 0.00 0.00 0.00 1.40
259 260 9.241317 GGATAGATGCTTTGTGATTTGTAAATG 57.759 33.333 0.00 0.00 0.00 2.32
260 261 9.793252 GATAGATGCTTTGTGATTTGTAAATGT 57.207 29.630 0.00 0.00 0.00 2.71
261 262 9.793252 ATAGATGCTTTGTGATTTGTAAATGTC 57.207 29.630 0.00 0.00 0.00 3.06
262 263 7.660112 AGATGCTTTGTGATTTGTAAATGTCA 58.340 30.769 0.00 0.00 0.00 3.58
263 264 7.596248 AGATGCTTTGTGATTTGTAAATGTCAC 59.404 33.333 0.00 0.16 40.26 3.67
264 265 5.685068 TGCTTTGTGATTTGTAAATGTCACG 59.315 36.000 0.00 0.00 41.73 4.35
265 266 5.685511 GCTTTGTGATTTGTAAATGTCACGT 59.314 36.000 0.00 0.00 41.73 4.49
266 267 6.344936 GCTTTGTGATTTGTAAATGTCACGTG 60.345 38.462 9.94 9.94 41.73 4.49
267 268 5.743026 TGTGATTTGTAAATGTCACGTGT 57.257 34.783 16.51 0.00 41.73 4.49
268 269 5.743467 TGTGATTTGTAAATGTCACGTGTC 58.257 37.500 16.51 10.98 41.73 3.67
269 270 5.294552 TGTGATTTGTAAATGTCACGTGTCA 59.705 36.000 17.50 17.50 41.73 3.58
270 271 6.017523 TGTGATTTGTAAATGTCACGTGTCAT 60.018 34.615 20.34 20.34 41.73 3.06
271 272 6.855914 GTGATTTGTAAATGTCACGTGTCATT 59.144 34.615 27.81 27.81 33.96 2.57
272 273 7.059488 GTGATTTGTAAATGTCACGTGTCATTC 59.941 37.037 31.38 23.01 33.96 2.67
273 274 5.993106 TTGTAAATGTCACGTGTCATTCA 57.007 34.783 31.38 24.75 33.82 2.57
274 275 6.552859 TTGTAAATGTCACGTGTCATTCAT 57.447 33.333 31.38 22.58 33.82 2.57
275 276 6.164408 TGTAAATGTCACGTGTCATTCATC 57.836 37.500 31.38 24.48 33.82 2.92
276 277 5.698545 TGTAAATGTCACGTGTCATTCATCA 59.301 36.000 31.38 26.03 33.82 3.07
277 278 4.934075 AATGTCACGTGTCATTCATCAG 57.066 40.909 27.81 0.00 30.14 2.90
278 279 3.385193 TGTCACGTGTCATTCATCAGT 57.615 42.857 16.51 0.00 0.00 3.41
279 280 3.059166 TGTCACGTGTCATTCATCAGTG 58.941 45.455 16.51 0.00 33.53 3.66
280 281 3.059884 GTCACGTGTCATTCATCAGTGT 58.940 45.455 16.51 0.00 33.76 3.55
281 282 3.059166 TCACGTGTCATTCATCAGTGTG 58.941 45.455 16.51 0.00 33.76 3.82
282 283 2.158254 CACGTGTCATTCATCAGTGTGG 59.842 50.000 7.58 0.00 0.00 4.17
283 284 1.733912 CGTGTCATTCATCAGTGTGGG 59.266 52.381 0.00 0.00 0.00 4.61
284 285 2.783135 GTGTCATTCATCAGTGTGGGT 58.217 47.619 0.00 0.00 0.00 4.51
285 286 2.744202 GTGTCATTCATCAGTGTGGGTC 59.256 50.000 0.00 0.00 0.00 4.46
286 287 2.639347 TGTCATTCATCAGTGTGGGTCT 59.361 45.455 0.00 0.00 0.00 3.85
287 288 3.265791 GTCATTCATCAGTGTGGGTCTC 58.734 50.000 0.00 0.00 0.00 3.36
288 289 2.905736 TCATTCATCAGTGTGGGTCTCA 59.094 45.455 0.00 0.00 0.00 3.27
289 290 2.839486 TTCATCAGTGTGGGTCTCAC 57.161 50.000 0.00 0.00 46.23 3.51
298 299 1.739067 GTGGGTCTCACATGCTAACC 58.261 55.000 0.00 0.00 45.39 2.85
299 300 3.478540 GGGTCTCACATGCTAACCC 57.521 57.895 9.62 9.62 42.62 4.11
301 302 2.717639 GGTCTCACATGCTAACCCAT 57.282 50.000 0.00 0.00 0.00 4.00
302 303 2.292267 GGTCTCACATGCTAACCCATG 58.708 52.381 0.00 0.94 46.19 3.66
303 304 2.092968 GGTCTCACATGCTAACCCATGA 60.093 50.000 8.93 0.00 44.12 3.07
304 305 3.201290 GTCTCACATGCTAACCCATGAG 58.799 50.000 8.93 0.00 44.12 2.90
305 306 3.106827 TCTCACATGCTAACCCATGAGA 58.893 45.455 8.93 4.73 44.12 3.27
306 307 3.118629 TCTCACATGCTAACCCATGAGAC 60.119 47.826 8.93 0.00 44.12 3.36
307 308 2.092968 TCACATGCTAACCCATGAGACC 60.093 50.000 8.93 0.00 44.12 3.85
308 309 2.092753 CACATGCTAACCCATGAGACCT 60.093 50.000 8.93 0.00 44.12 3.85
309 310 2.092753 ACATGCTAACCCATGAGACCTG 60.093 50.000 8.93 0.00 44.12 4.00
310 311 0.911769 TGCTAACCCATGAGACCTGG 59.088 55.000 0.00 0.00 0.00 4.45
311 312 0.912486 GCTAACCCATGAGACCTGGT 59.088 55.000 0.00 0.00 31.44 4.00
312 313 1.134371 GCTAACCCATGAGACCTGGTC 60.134 57.143 19.20 19.20 31.44 4.02
313 314 2.472029 CTAACCCATGAGACCTGGTCT 58.528 52.381 28.70 28.70 46.42 3.85
329 330 9.620259 AGACCTGGTCTCATATAATTCTTTTTC 57.380 33.333 23.49 0.00 38.71 2.29
330 331 8.438676 ACCTGGTCTCATATAATTCTTTTTCG 57.561 34.615 0.00 0.00 0.00 3.46
331 332 8.047310 ACCTGGTCTCATATAATTCTTTTTCGT 58.953 33.333 0.00 0.00 0.00 3.85
332 333 8.552034 CCTGGTCTCATATAATTCTTTTTCGTC 58.448 37.037 0.00 0.00 0.00 4.20
333 334 8.126871 TGGTCTCATATAATTCTTTTTCGTCG 57.873 34.615 0.00 0.00 0.00 5.12
334 335 7.223971 TGGTCTCATATAATTCTTTTTCGTCGG 59.776 37.037 0.00 0.00 0.00 4.79
335 336 7.437267 GGTCTCATATAATTCTTTTTCGTCGGA 59.563 37.037 0.00 0.00 0.00 4.55
336 337 8.267367 GTCTCATATAATTCTTTTTCGTCGGAC 58.733 37.037 0.00 0.00 0.00 4.79
337 338 7.977293 TCTCATATAATTCTTTTTCGTCGGACA 59.023 33.333 9.10 0.00 0.00 4.02
338 339 7.902032 TCATATAATTCTTTTTCGTCGGACAC 58.098 34.615 9.10 0.00 0.00 3.67
348 349 4.107029 TCGGACACGAGGATGGTT 57.893 55.556 0.00 0.00 45.59 3.67
349 350 1.589630 TCGGACACGAGGATGGTTG 59.410 57.895 0.00 0.00 45.59 3.77
350 351 1.447838 CGGACACGAGGATGGTTGG 60.448 63.158 0.00 0.00 44.60 3.77
351 352 1.884075 CGGACACGAGGATGGTTGGA 61.884 60.000 0.00 0.00 44.60 3.53
352 353 0.323629 GGACACGAGGATGGTTGGAA 59.676 55.000 0.00 0.00 0.00 3.53
353 354 1.439679 GACACGAGGATGGTTGGAAC 58.560 55.000 0.00 0.00 0.00 3.62
354 355 0.762418 ACACGAGGATGGTTGGAACA 59.238 50.000 0.00 0.00 0.00 3.18
367 368 2.679355 TGGAACAAGCAATTCGTTCG 57.321 45.000 0.00 0.00 39.93 3.95
368 369 2.214347 TGGAACAAGCAATTCGTTCGA 58.786 42.857 0.00 0.00 39.93 3.71
369 370 2.811431 TGGAACAAGCAATTCGTTCGAT 59.189 40.909 0.00 0.00 39.93 3.59
370 371 3.120338 TGGAACAAGCAATTCGTTCGATC 60.120 43.478 0.00 0.00 39.93 3.69
371 372 3.120338 GGAACAAGCAATTCGTTCGATCA 60.120 43.478 0.00 0.00 39.93 2.92
372 373 3.729526 ACAAGCAATTCGTTCGATCAG 57.270 42.857 0.00 0.00 0.00 2.90
373 374 3.325870 ACAAGCAATTCGTTCGATCAGA 58.674 40.909 0.00 0.00 0.00 3.27
374 375 3.745975 ACAAGCAATTCGTTCGATCAGAA 59.254 39.130 0.00 0.00 36.31 3.02
375 376 4.213270 ACAAGCAATTCGTTCGATCAGAAA 59.787 37.500 0.00 0.00 41.10 2.52
376 377 4.590400 AGCAATTCGTTCGATCAGAAAG 57.410 40.909 0.00 0.58 41.10 2.62
377 378 3.094294 GCAATTCGTTCGATCAGAAAGC 58.906 45.455 0.00 0.00 41.10 3.51
378 379 3.424829 GCAATTCGTTCGATCAGAAAGCA 60.425 43.478 14.60 0.00 41.10 3.91
379 380 4.711721 CAATTCGTTCGATCAGAAAGCAA 58.288 39.130 0.00 0.00 41.10 3.91
380 381 3.788434 TTCGTTCGATCAGAAAGCAAC 57.212 42.857 0.00 0.00 41.10 4.17
381 382 1.719246 TCGTTCGATCAGAAAGCAACG 59.281 47.619 0.00 0.00 41.10 4.10
382 383 1.455786 CGTTCGATCAGAAAGCAACGT 59.544 47.619 0.00 0.00 41.10 3.99
383 384 2.096909 CGTTCGATCAGAAAGCAACGTT 60.097 45.455 0.00 0.00 41.10 3.99
384 385 3.470562 GTTCGATCAGAAAGCAACGTTC 58.529 45.455 0.00 0.00 41.10 3.95
385 386 2.066262 TCGATCAGAAAGCAACGTTCC 58.934 47.619 0.00 0.00 0.00 3.62
386 387 1.798223 CGATCAGAAAGCAACGTTCCA 59.202 47.619 0.00 0.00 0.00 3.53
387 388 2.159787 CGATCAGAAAGCAACGTTCCAG 60.160 50.000 0.00 0.00 0.00 3.86
388 389 2.325583 TCAGAAAGCAACGTTCCAGT 57.674 45.000 0.00 0.00 0.00 4.00
389 390 1.939934 TCAGAAAGCAACGTTCCAGTG 59.060 47.619 0.00 0.00 0.00 3.66
390 391 1.939934 CAGAAAGCAACGTTCCAGTGA 59.060 47.619 0.00 0.00 0.00 3.41
391 392 2.354510 CAGAAAGCAACGTTCCAGTGAA 59.645 45.455 0.00 0.00 0.00 3.18
392 393 3.013921 AGAAAGCAACGTTCCAGTGAAA 58.986 40.909 0.00 0.00 30.79 2.69
393 394 3.065371 AGAAAGCAACGTTCCAGTGAAAG 59.935 43.478 0.00 0.00 36.24 2.62
394 395 2.325583 AGCAACGTTCCAGTGAAAGA 57.674 45.000 0.00 0.00 34.54 2.52
395 396 2.851195 AGCAACGTTCCAGTGAAAGAT 58.149 42.857 0.00 0.00 34.54 2.40
396 397 3.214328 AGCAACGTTCCAGTGAAAGATT 58.786 40.909 0.00 0.00 34.54 2.40
397 398 3.251004 AGCAACGTTCCAGTGAAAGATTC 59.749 43.478 0.00 0.00 34.54 2.52
398 399 3.609409 GCAACGTTCCAGTGAAAGATTCC 60.609 47.826 0.00 0.00 34.54 3.01
399 400 2.413837 ACGTTCCAGTGAAAGATTCCG 58.586 47.619 0.00 0.00 34.54 4.30
400 401 2.224209 ACGTTCCAGTGAAAGATTCCGT 60.224 45.455 0.00 0.00 34.54 4.69
401 402 2.806244 CGTTCCAGTGAAAGATTCCGTT 59.194 45.455 0.00 0.00 32.46 4.44
402 403 3.120649 CGTTCCAGTGAAAGATTCCGTTC 60.121 47.826 0.00 0.00 32.46 3.95
403 404 3.762407 TCCAGTGAAAGATTCCGTTCA 57.238 42.857 0.00 0.00 38.20 3.18
434 435 2.739849 TTTGGTTGCCCGCATCGAGA 62.740 55.000 0.00 0.00 0.00 4.04
465 466 1.155155 GTGGGGGAAGGAAAAGGCA 59.845 57.895 0.00 0.00 0.00 4.75
476 477 2.771372 AGGAAAAGGCATGTTTGGTTGT 59.229 40.909 0.00 0.00 0.00 3.32
477 478 3.199727 AGGAAAAGGCATGTTTGGTTGTT 59.800 39.130 0.00 0.00 0.00 2.83
491 492 5.723672 TTGGTTGTTTGGTTTCACTGTTA 57.276 34.783 0.00 0.00 0.00 2.41
544 545 0.819259 AGCTTGGCTCGCTGAAAACA 60.819 50.000 0.42 0.00 36.15 2.83
569 570 2.890847 ATCGGCAGTTTCTCGCGAGG 62.891 60.000 33.98 19.37 0.00 4.63
639 642 2.113986 GGGGAATGGCGGGAGATG 59.886 66.667 0.00 0.00 0.00 2.90
714 721 1.794714 CTCACCCATAGCCACTACCT 58.205 55.000 0.00 0.00 0.00 3.08
739 746 0.539051 CTTCCCTACTGCCTCACCAG 59.461 60.000 0.00 0.00 38.78 4.00
816 829 2.813474 CGTTTGCGGCGGATCTGA 60.813 61.111 9.78 0.00 0.00 3.27
820 833 4.916293 TGCGGCGGATCTGATGCC 62.916 66.667 9.78 8.55 45.39 4.40
946 961 1.673923 GGTCGGTGGTTAGGCTGTTAC 60.674 57.143 0.00 0.00 0.00 2.50
968 983 3.738281 CGCAAGGTGTAGGATCGATTTCT 60.738 47.826 0.00 3.36 0.00 2.52
1006 1021 4.954202 TCGATGTTGACTAGGTTATGGACT 59.046 41.667 0.00 0.00 0.00 3.85
1098 1113 2.044860 CAGAGAGTTGTTCGTCGTGTC 58.955 52.381 0.00 0.00 0.00 3.67
1126 1141 3.591527 ACCTTTGATCCACTATGGTCCAA 59.408 43.478 0.00 0.00 39.03 3.53
1187 1202 2.416547 ACATCTACAACTGCAATGACGC 59.583 45.455 6.19 0.00 0.00 5.19
1213 1228 4.125703 GACTCTGTGGATGCTTAGAATGG 58.874 47.826 0.00 0.00 0.00 3.16
1247 1262 3.345508 TGCTAGACTTGTCGAGACCTA 57.654 47.619 13.61 0.00 0.00 3.08
1254 1269 2.040012 ACTTGTCGAGACCTACAGGAGA 59.960 50.000 1.29 0.00 38.94 3.71
1303 1319 1.202687 CCAGTGTGGAAGAGCAAGTGA 60.203 52.381 0.00 0.00 40.96 3.41
1325 1341 3.156293 CCATGTTCCTCCATGTTGTTGA 58.844 45.455 0.00 0.00 40.50 3.18
1358 1374 3.157087 GGTTCAGGGTCATTCACAACAT 58.843 45.455 0.00 0.00 0.00 2.71
1433 1450 2.167487 CTGTTGGGAGCTTAGAGGAGAC 59.833 54.545 0.00 0.00 0.00 3.36
1444 1461 4.343526 GCTTAGAGGAGACATGATCAGGAA 59.656 45.833 15.42 0.00 0.00 3.36
1466 1483 1.081833 ATCTGGCCAGACTCCACCT 59.918 57.895 37.39 17.43 40.75 4.00
1510 1527 6.575244 ATGGTATCCATACTTCAAGGTGAA 57.425 37.500 0.00 0.00 43.19 3.18
1536 1555 9.241919 ACATTGACAATATACACTTTTCATGGA 57.758 29.630 0.00 0.00 0.00 3.41
1570 1589 6.785488 TGTATTGTTCAAGTTGAGCACTAG 57.215 37.500 20.49 0.00 37.33 2.57
1652 1671 4.833380 ACTGCTAGAGTTTCTAGGTCACAA 59.167 41.667 13.39 0.00 45.03 3.33
1661 1680 1.134995 TCTAGGTCACAATCTGCAGCG 60.135 52.381 9.47 2.18 0.00 5.18
1663 1682 0.952497 AGGTCACAATCTGCAGCGTG 60.952 55.000 19.01 19.01 0.00 5.34
1685 1707 2.067197 GGGGGAGCACTACACAAGT 58.933 57.895 0.00 0.00 39.81 3.16
1717 1739 3.490439 TCCTGCTGTTGACTTTGATCA 57.510 42.857 0.00 0.00 0.00 2.92
1730 1752 7.895975 TGACTTTGATCAGAAGTTCACATAG 57.104 36.000 18.24 6.89 37.46 2.23
1736 1758 5.422012 TGATCAGAAGTTCACATAGGTGCTA 59.578 40.000 1.79 0.00 44.87 3.49
1917 1939 2.164624 CTCAACGAGTTCTCTGGTAGGG 59.835 54.545 0.00 0.00 32.55 3.53
1920 1942 0.733729 CGAGTTCTCTGGTAGGGACG 59.266 60.000 0.00 0.00 0.00 4.79
1923 1945 3.743584 CGAGTTCTCTGGTAGGGACGATA 60.744 52.174 0.00 0.00 0.00 2.92
1924 1946 4.400120 GAGTTCTCTGGTAGGGACGATAT 58.600 47.826 0.00 0.00 0.00 1.63
1941 1963 4.342378 ACGATATTAGGACTGCACATGAGT 59.658 41.667 0.00 0.00 0.00 3.41
1982 2006 5.353394 ACAACCTGAGTAACTGTTGAGAA 57.647 39.130 2.69 0.00 0.00 2.87
2013 2037 9.635404 TTTGGAACTCTGAAGAATAGGTTTAAA 57.365 29.630 0.00 0.00 0.00 1.52
2029 2053 6.794534 AGGTTTAAAATCCTGGATCAGAAGT 58.205 36.000 10.14 0.00 32.44 3.01
2037 2061 4.042884 TCCTGGATCAGAAGTCATTCCAT 58.957 43.478 0.00 0.00 35.99 3.41
2054 2078 1.696336 CCATCCATACTCCACTCAGGG 59.304 57.143 0.00 0.00 38.24 4.45
2068 2092 3.748568 CACTCAGGGTAAGCTTGTTCTTC 59.251 47.826 9.86 0.00 0.00 2.87
2122 2146 0.951558 GGGCTTTGATGAACACGTGT 59.048 50.000 17.22 17.22 0.00 4.49
2214 2238 5.998981 TGACGCTTGGAAGAATAAAAGGTTA 59.001 36.000 0.00 0.00 0.00 2.85
2248 2273 2.558359 GCAATGTGGCTTAACAGAGGTT 59.442 45.455 0.00 0.00 41.06 3.50
2253 2278 3.389983 TGTGGCTTAACAGAGGTTAGTGT 59.610 43.478 0.00 0.00 40.40 3.55
2256 2281 5.047519 GTGGCTTAACAGAGGTTAGTGTAGA 60.048 44.000 0.00 0.00 40.40 2.59
2307 2358 0.954449 GCAGCAGCAGCAGAAGAAGA 60.954 55.000 4.63 0.00 45.49 2.87
2313 2364 3.661944 CAGCAGCAGAAGAAGAAGAAGA 58.338 45.455 0.00 0.00 0.00 2.87
2329 2397 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2335 2403 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
2359 2427 0.692476 ATCTGGTAGCAGCAACACCA 59.308 50.000 17.20 11.77 40.01 4.17
2380 2448 7.128883 ACACCAATGAACTATCCCCTATTTAGT 59.871 37.037 0.00 0.00 0.00 2.24
2468 2536 1.734465 GCTGGCACTACATGTTCAGAC 59.266 52.381 2.30 0.00 35.24 3.51
2486 2554 2.036475 AGACTGTGTGTGGTAAGCTCAG 59.964 50.000 0.00 0.00 0.00 3.35
2548 2616 9.454859 TTGTAATCAAACACCATGTCATATGTA 57.545 29.630 1.90 0.00 0.00 2.29
2563 2631 7.102993 TGTCATATGTACGCCTAATGCAATAT 58.897 34.615 1.90 0.00 41.33 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.014297 ACTGGATATTAGTGTCCTTTGAAAAAG 57.986 33.333 2.74 0.00 36.63 2.27
2 3 7.094377 GCACTGGATATTAGTGTCCTTTGAAAA 60.094 37.037 17.28 0.00 45.60 2.29
3 4 6.374333 GCACTGGATATTAGTGTCCTTTGAAA 59.626 38.462 17.28 0.00 45.60 2.69
4 5 5.880332 GCACTGGATATTAGTGTCCTTTGAA 59.120 40.000 17.28 0.00 45.60 2.69
6 7 4.576463 GGCACTGGATATTAGTGTCCTTTG 59.424 45.833 17.28 1.41 43.20 2.77
7 8 4.781934 GGCACTGGATATTAGTGTCCTTT 58.218 43.478 17.28 0.00 43.20 3.11
12 13 2.102588 GACGGGCACTGGATATTAGTGT 59.897 50.000 17.28 3.53 45.60 3.55
13 14 2.755650 GACGGGCACTGGATATTAGTG 58.244 52.381 13.73 13.73 46.37 2.74
14 15 1.340248 CGACGGGCACTGGATATTAGT 59.660 52.381 0.00 0.00 40.47 2.24
15 16 1.336887 CCGACGGGCACTGGATATTAG 60.337 57.143 5.81 0.00 40.47 1.73
16 17 0.677288 CCGACGGGCACTGGATATTA 59.323 55.000 5.81 0.00 40.47 0.98
17 18 1.046472 TCCGACGGGCACTGGATATT 61.046 55.000 15.25 0.00 40.47 1.28
18 19 1.456892 TCCGACGGGCACTGGATAT 60.457 57.895 15.25 0.00 40.47 1.63
19 20 2.043752 TCCGACGGGCACTGGATA 60.044 61.111 15.25 0.00 40.47 2.59
20 21 3.771160 GTCCGACGGGCACTGGAT 61.771 66.667 15.00 0.00 40.47 3.41
31 32 1.725164 GTGAAAGATTCCGTGTCCGAC 59.275 52.381 0.00 0.00 35.63 4.79
32 33 1.616865 AGTGAAAGATTCCGTGTCCGA 59.383 47.619 0.00 0.00 35.63 4.55
33 34 1.726791 CAGTGAAAGATTCCGTGTCCG 59.273 52.381 0.00 0.00 0.00 4.79
34 35 2.076863 CCAGTGAAAGATTCCGTGTCC 58.923 52.381 0.00 0.00 0.00 4.02
35 36 3.040147 TCCAGTGAAAGATTCCGTGTC 57.960 47.619 0.00 0.00 0.00 3.67
36 37 3.139077 GTTCCAGTGAAAGATTCCGTGT 58.861 45.455 0.00 0.00 30.79 4.49
37 38 2.157668 CGTTCCAGTGAAAGATTCCGTG 59.842 50.000 0.00 0.00 32.46 4.94
38 39 2.036733 TCGTTCCAGTGAAAGATTCCGT 59.963 45.455 0.00 0.00 34.64 4.69
39 40 2.683968 TCGTTCCAGTGAAAGATTCCG 58.316 47.619 0.00 0.00 34.64 4.30
40 41 3.181506 GCATCGTTCCAGTGAAAGATTCC 60.182 47.826 0.00 0.00 44.08 3.01
41 42 3.686726 AGCATCGTTCCAGTGAAAGATTC 59.313 43.478 0.00 0.00 44.08 2.52
42 43 3.679389 AGCATCGTTCCAGTGAAAGATT 58.321 40.909 0.00 0.00 44.08 2.40
43 44 3.340814 AGCATCGTTCCAGTGAAAGAT 57.659 42.857 0.00 0.00 46.35 2.40
44 45 2.839486 AGCATCGTTCCAGTGAAAGA 57.161 45.000 0.00 0.00 42.00 2.52
45 46 3.499918 AGAAAGCATCGTTCCAGTGAAAG 59.500 43.478 0.00 0.00 30.79 2.62
46 47 3.250762 CAGAAAGCATCGTTCCAGTGAAA 59.749 43.478 0.00 0.00 30.79 2.69
47 48 2.807967 CAGAAAGCATCGTTCCAGTGAA 59.192 45.455 0.00 0.00 0.00 3.18
48 49 2.037121 TCAGAAAGCATCGTTCCAGTGA 59.963 45.455 0.00 0.00 0.00 3.41
49 50 2.416747 TCAGAAAGCATCGTTCCAGTG 58.583 47.619 0.00 0.00 0.00 3.66
50 51 2.839486 TCAGAAAGCATCGTTCCAGT 57.161 45.000 0.00 0.00 0.00 4.00
51 52 2.283617 CGATCAGAAAGCATCGTTCCAG 59.716 50.000 0.00 0.00 37.67 3.86
52 53 2.094234 TCGATCAGAAAGCATCGTTCCA 60.094 45.455 2.34 0.00 42.13 3.53
53 54 2.540515 TCGATCAGAAAGCATCGTTCC 58.459 47.619 2.34 0.00 42.13 3.62
54 55 3.540359 CGTTCGATCAGAAAGCATCGTTC 60.540 47.826 2.34 0.00 42.13 3.95
55 56 2.345641 CGTTCGATCAGAAAGCATCGTT 59.654 45.455 2.34 0.00 42.13 3.85
56 57 1.920574 CGTTCGATCAGAAAGCATCGT 59.079 47.619 2.34 0.00 42.13 3.73
57 58 2.185262 TCGTTCGATCAGAAAGCATCG 58.815 47.619 0.00 0.00 41.10 3.84
58 59 4.785669 ATTCGTTCGATCAGAAAGCATC 57.214 40.909 0.00 0.00 41.10 3.91
59 60 5.812642 AGTAATTCGTTCGATCAGAAAGCAT 59.187 36.000 0.00 0.00 41.10 3.79
60 61 5.168569 AGTAATTCGTTCGATCAGAAAGCA 58.831 37.500 0.00 0.00 41.10 3.91
61 62 5.704217 AGTAATTCGTTCGATCAGAAAGC 57.296 39.130 0.00 0.00 41.10 3.51
62 63 7.050281 ACAAGTAATTCGTTCGATCAGAAAG 57.950 36.000 0.00 0.58 41.10 2.62
63 64 7.416154 AACAAGTAATTCGTTCGATCAGAAA 57.584 32.000 0.00 0.00 41.10 2.52
64 65 7.170151 TGAAACAAGTAATTCGTTCGATCAGAA 59.830 33.333 0.00 0.00 36.31 3.02
65 66 6.643360 TGAAACAAGTAATTCGTTCGATCAGA 59.357 34.615 0.00 0.00 0.00 3.27
66 67 6.817396 TGAAACAAGTAATTCGTTCGATCAG 58.183 36.000 0.00 0.00 0.00 2.90
67 68 6.772770 TGAAACAAGTAATTCGTTCGATCA 57.227 33.333 0.00 0.00 0.00 2.92
68 69 6.518736 GGTTGAAACAAGTAATTCGTTCGATC 59.481 38.462 0.00 0.00 0.00 3.69
69 70 6.368213 GGTTGAAACAAGTAATTCGTTCGAT 58.632 36.000 0.00 0.00 0.00 3.59
70 71 5.556758 CGGTTGAAACAAGTAATTCGTTCGA 60.557 40.000 0.00 0.00 0.00 3.71
71 72 4.605594 CGGTTGAAACAAGTAATTCGTTCG 59.394 41.667 0.00 0.00 0.00 3.95
72 73 5.504392 ACGGTTGAAACAAGTAATTCGTTC 58.496 37.500 0.00 0.00 0.00 3.95
73 74 5.488645 ACGGTTGAAACAAGTAATTCGTT 57.511 34.783 0.00 0.00 0.00 3.85
74 75 4.024641 GGACGGTTGAAACAAGTAATTCGT 60.025 41.667 0.00 0.00 0.00 3.85
75 76 4.212636 AGGACGGTTGAAACAAGTAATTCG 59.787 41.667 0.00 0.00 0.00 3.34
76 77 5.614013 CGAGGACGGTTGAAACAAGTAATTC 60.614 44.000 0.00 0.00 35.72 2.17
77 78 4.212636 CGAGGACGGTTGAAACAAGTAATT 59.787 41.667 0.00 0.00 35.72 1.40
78 79 3.744426 CGAGGACGGTTGAAACAAGTAAT 59.256 43.478 0.00 0.00 35.72 1.89
79 80 3.125316 CGAGGACGGTTGAAACAAGTAA 58.875 45.455 0.00 0.00 35.72 2.24
80 81 2.101249 ACGAGGACGGTTGAAACAAGTA 59.899 45.455 0.00 0.00 44.46 2.24
81 82 1.134610 ACGAGGACGGTTGAAACAAGT 60.135 47.619 0.00 0.00 44.46 3.16
82 83 1.260561 CACGAGGACGGTTGAAACAAG 59.739 52.381 0.00 0.00 44.46 3.16
83 84 1.292061 CACGAGGACGGTTGAAACAA 58.708 50.000 0.00 0.00 44.46 2.83
84 85 0.176219 ACACGAGGACGGTTGAAACA 59.824 50.000 0.00 0.00 44.46 2.83
85 86 0.857287 GACACGAGGACGGTTGAAAC 59.143 55.000 0.00 0.00 44.46 2.78
86 87 0.249573 GGACACGAGGACGGTTGAAA 60.250 55.000 0.00 0.00 44.46 2.69
87 88 1.364901 GGACACGAGGACGGTTGAA 59.635 57.895 0.00 0.00 44.46 2.69
88 89 2.911484 CGGACACGAGGACGGTTGA 61.911 63.158 0.00 0.00 44.60 3.18
89 90 2.430244 CGGACACGAGGACGGTTG 60.430 66.667 0.00 0.00 44.60 3.77
90 91 2.595463 TCGGACACGAGGACGGTT 60.595 61.111 0.00 0.00 45.59 4.44
100 101 6.839820 ATATAATTCTTTTCCGTCGGACAC 57.160 37.500 15.07 0.00 0.00 3.67
101 102 8.415553 TCTTATATAATTCTTTTCCGTCGGACA 58.584 33.333 15.07 4.29 0.00 4.02
102 103 8.807667 TCTTATATAATTCTTTTCCGTCGGAC 57.192 34.615 15.07 0.00 0.00 4.79
103 104 9.635520 GATCTTATATAATTCTTTTCCGTCGGA 57.364 33.333 10.71 10.71 0.00 4.55
104 105 9.419297 TGATCTTATATAATTCTTTTCCGTCGG 57.581 33.333 4.39 4.39 0.00 4.79
123 124 5.884232 TGCTAACTCGTAAGACCTGATCTTA 59.116 40.000 0.00 0.00 46.38 2.10
125 126 4.270834 TGCTAACTCGTAAGACCTGATCT 58.729 43.478 0.00 0.00 45.01 2.75
126 127 4.634184 TGCTAACTCGTAAGACCTGATC 57.366 45.455 0.00 0.00 45.01 2.92
127 128 4.402793 ACATGCTAACTCGTAAGACCTGAT 59.597 41.667 0.00 0.00 45.01 2.90
128 129 3.762288 ACATGCTAACTCGTAAGACCTGA 59.238 43.478 0.00 0.00 45.01 3.86
129 130 3.859961 CACATGCTAACTCGTAAGACCTG 59.140 47.826 0.00 0.00 45.01 4.00
130 131 3.762288 TCACATGCTAACTCGTAAGACCT 59.238 43.478 0.00 0.00 45.01 3.85
131 132 4.106029 TCACATGCTAACTCGTAAGACC 57.894 45.455 0.00 0.00 45.01 3.85
132 133 4.794246 GTCTCACATGCTAACTCGTAAGAC 59.206 45.833 0.00 0.00 45.01 3.01
134 135 4.106197 GGTCTCACATGCTAACTCGTAAG 58.894 47.826 0.00 0.00 0.00 2.34
135 136 3.119245 GGGTCTCACATGCTAACTCGTAA 60.119 47.826 0.00 0.00 0.00 3.18
136 137 2.426024 GGGTCTCACATGCTAACTCGTA 59.574 50.000 0.00 0.00 0.00 3.43
137 138 1.204941 GGGTCTCACATGCTAACTCGT 59.795 52.381 0.00 0.00 0.00 4.18
138 139 1.204704 TGGGTCTCACATGCTAACTCG 59.795 52.381 0.00 0.00 0.00 4.18
139 140 3.462021 GATGGGTCTCACATGCTAACTC 58.538 50.000 0.00 0.00 0.00 3.01
140 141 2.171448 GGATGGGTCTCACATGCTAACT 59.829 50.000 0.00 0.00 34.35 2.24
141 142 2.171448 AGGATGGGTCTCACATGCTAAC 59.829 50.000 4.30 0.00 43.81 2.34
142 143 2.481441 AGGATGGGTCTCACATGCTAA 58.519 47.619 4.30 0.00 43.81 3.09
143 144 2.180946 AGGATGGGTCTCACATGCTA 57.819 50.000 4.30 0.00 43.81 3.49
144 145 2.180946 TAGGATGGGTCTCACATGCT 57.819 50.000 10.48 10.48 46.61 3.79
145 146 3.144506 CATTAGGATGGGTCTCACATGC 58.855 50.000 0.00 0.00 36.99 4.06
160 161 6.293698 TGAATGTCACATCTCATCCATTAGG 58.706 40.000 0.00 0.00 0.00 2.69
161 162 7.981102 ATGAATGTCACATCTCATCCATTAG 57.019 36.000 8.73 0.00 0.00 1.73
162 163 9.850198 TTTATGAATGTCACATCTCATCCATTA 57.150 29.630 14.85 0.97 31.20 1.90
163 164 8.756486 TTTATGAATGTCACATCTCATCCATT 57.244 30.769 14.85 0.00 31.20 3.16
164 165 8.793592 CATTTATGAATGTCACATCTCATCCAT 58.206 33.333 14.85 8.60 38.25 3.41
165 166 7.994334 TCATTTATGAATGTCACATCTCATCCA 59.006 33.333 14.85 7.23 42.61 3.41
166 167 8.387190 TCATTTATGAATGTCACATCTCATCC 57.613 34.615 14.85 0.00 42.61 3.51
172 173 9.955208 TGCTTTATCATTTATGAATGTCACATC 57.045 29.630 9.77 0.00 42.61 3.06
174 175 9.955208 GATGCTTTATCATTTATGAATGTCACA 57.045 29.630 9.77 2.96 42.61 3.58
187 188 9.723601 GAAGGAGAGATTAGATGCTTTATCATT 57.276 33.333 0.00 0.00 38.31 2.57
188 189 8.320617 GGAAGGAGAGATTAGATGCTTTATCAT 58.679 37.037 0.00 0.00 38.31 2.45
189 190 7.512058 AGGAAGGAGAGATTAGATGCTTTATCA 59.488 37.037 0.00 0.00 38.31 2.15
190 191 7.818930 CAGGAAGGAGAGATTAGATGCTTTATC 59.181 40.741 0.00 0.00 35.97 1.75
191 192 7.512058 TCAGGAAGGAGAGATTAGATGCTTTAT 59.488 37.037 0.00 0.00 0.00 1.40
192 193 6.841229 TCAGGAAGGAGAGATTAGATGCTTTA 59.159 38.462 0.00 0.00 0.00 1.85
193 194 5.664908 TCAGGAAGGAGAGATTAGATGCTTT 59.335 40.000 0.00 0.00 0.00 3.51
194 195 5.215069 TCAGGAAGGAGAGATTAGATGCTT 58.785 41.667 0.00 0.00 0.00 3.91
195 196 4.813809 TCAGGAAGGAGAGATTAGATGCT 58.186 43.478 0.00 0.00 0.00 3.79
196 197 5.743636 ATCAGGAAGGAGAGATTAGATGC 57.256 43.478 0.00 0.00 0.00 3.91
197 198 7.733969 TCAAATCAGGAAGGAGAGATTAGATG 58.266 38.462 0.00 0.00 31.01 2.90
198 199 7.927683 TCAAATCAGGAAGGAGAGATTAGAT 57.072 36.000 0.00 0.00 31.01 1.98
199 200 7.401493 ACTTCAAATCAGGAAGGAGAGATTAGA 59.599 37.037 7.04 0.00 44.69 2.10
200 201 7.495279 CACTTCAAATCAGGAAGGAGAGATTAG 59.505 40.741 7.04 0.00 44.69 1.73
201 202 7.334090 CACTTCAAATCAGGAAGGAGAGATTA 58.666 38.462 7.04 0.00 44.69 1.75
202 203 6.179040 CACTTCAAATCAGGAAGGAGAGATT 58.821 40.000 7.04 0.00 44.69 2.40
203 204 5.339035 CCACTTCAAATCAGGAAGGAGAGAT 60.339 44.000 7.04 0.00 44.69 2.75
204 205 4.019860 CCACTTCAAATCAGGAAGGAGAGA 60.020 45.833 7.04 0.00 44.69 3.10
205 206 4.260170 CCACTTCAAATCAGGAAGGAGAG 58.740 47.826 7.04 0.00 44.69 3.20
206 207 3.009473 CCCACTTCAAATCAGGAAGGAGA 59.991 47.826 7.04 0.00 44.69 3.71
207 208 3.350833 CCCACTTCAAATCAGGAAGGAG 58.649 50.000 7.04 0.00 44.69 3.69
208 209 2.041620 CCCCACTTCAAATCAGGAAGGA 59.958 50.000 7.04 0.00 44.69 3.36
209 210 2.450476 CCCCACTTCAAATCAGGAAGG 58.550 52.381 7.04 0.00 44.69 3.46
210 211 1.821136 GCCCCACTTCAAATCAGGAAG 59.179 52.381 0.00 0.00 45.63 3.46
211 212 1.428912 AGCCCCACTTCAAATCAGGAA 59.571 47.619 0.00 0.00 0.00 3.36
212 213 1.075601 AGCCCCACTTCAAATCAGGA 58.924 50.000 0.00 0.00 0.00 3.86
213 214 1.180029 CAGCCCCACTTCAAATCAGG 58.820 55.000 0.00 0.00 0.00 3.86
214 215 1.180029 CCAGCCCCACTTCAAATCAG 58.820 55.000 0.00 0.00 0.00 2.90
215 216 0.251742 CCCAGCCCCACTTCAAATCA 60.252 55.000 0.00 0.00 0.00 2.57
216 217 0.039618 TCCCAGCCCCACTTCAAATC 59.960 55.000 0.00 0.00 0.00 2.17
217 218 0.712380 ATCCCAGCCCCACTTCAAAT 59.288 50.000 0.00 0.00 0.00 2.32
218 219 1.284785 CTATCCCAGCCCCACTTCAAA 59.715 52.381 0.00 0.00 0.00 2.69
219 220 0.918983 CTATCCCAGCCCCACTTCAA 59.081 55.000 0.00 0.00 0.00 2.69
220 221 0.044092 TCTATCCCAGCCCCACTTCA 59.956 55.000 0.00 0.00 0.00 3.02
221 222 1.072965 CATCTATCCCAGCCCCACTTC 59.927 57.143 0.00 0.00 0.00 3.01
222 223 1.143813 CATCTATCCCAGCCCCACTT 58.856 55.000 0.00 0.00 0.00 3.16
223 224 1.422161 GCATCTATCCCAGCCCCACT 61.422 60.000 0.00 0.00 0.00 4.00
224 225 1.073897 GCATCTATCCCAGCCCCAC 59.926 63.158 0.00 0.00 0.00 4.61
225 226 0.698886 AAGCATCTATCCCAGCCCCA 60.699 55.000 0.00 0.00 0.00 4.96
226 227 0.480252 AAAGCATCTATCCCAGCCCC 59.520 55.000 0.00 0.00 0.00 5.80
227 228 1.133668 ACAAAGCATCTATCCCAGCCC 60.134 52.381 0.00 0.00 0.00 5.19
228 229 1.952296 CACAAAGCATCTATCCCAGCC 59.048 52.381 0.00 0.00 0.00 4.85
229 230 2.923121 TCACAAAGCATCTATCCCAGC 58.077 47.619 0.00 0.00 0.00 4.85
230 231 5.359009 ACAAATCACAAAGCATCTATCCCAG 59.641 40.000 0.00 0.00 0.00 4.45
231 232 5.263599 ACAAATCACAAAGCATCTATCCCA 58.736 37.500 0.00 0.00 0.00 4.37
232 233 5.841957 ACAAATCACAAAGCATCTATCCC 57.158 39.130 0.00 0.00 0.00 3.85
233 234 9.241317 CATTTACAAATCACAAAGCATCTATCC 57.759 33.333 0.00 0.00 0.00 2.59
234 235 9.793252 ACATTTACAAATCACAAAGCATCTATC 57.207 29.630 0.00 0.00 0.00 2.08
235 236 9.793252 GACATTTACAAATCACAAAGCATCTAT 57.207 29.630 0.00 0.00 0.00 1.98
236 237 8.791675 TGACATTTACAAATCACAAAGCATCTA 58.208 29.630 0.00 0.00 0.00 1.98
237 238 7.596248 GTGACATTTACAAATCACAAAGCATCT 59.404 33.333 0.00 0.00 0.00 2.90
238 239 7.409661 CGTGACATTTACAAATCACAAAGCATC 60.410 37.037 8.41 0.00 0.00 3.91
239 240 6.363088 CGTGACATTTACAAATCACAAAGCAT 59.637 34.615 8.41 0.00 0.00 3.79
240 241 5.685068 CGTGACATTTACAAATCACAAAGCA 59.315 36.000 8.41 0.00 0.00 3.91
241 242 5.685511 ACGTGACATTTACAAATCACAAAGC 59.314 36.000 8.41 0.00 0.00 3.51
242 243 6.690957 ACACGTGACATTTACAAATCACAAAG 59.309 34.615 25.01 0.00 0.00 2.77
243 244 6.556212 ACACGTGACATTTACAAATCACAAA 58.444 32.000 25.01 0.00 0.00 2.83
244 245 6.125327 ACACGTGACATTTACAAATCACAA 57.875 33.333 25.01 0.00 0.00 3.33
245 246 5.294552 TGACACGTGACATTTACAAATCACA 59.705 36.000 25.01 0.00 0.00 3.58
246 247 5.743467 TGACACGTGACATTTACAAATCAC 58.257 37.500 25.01 0.00 0.00 3.06
247 248 5.993106 TGACACGTGACATTTACAAATCA 57.007 34.783 25.01 7.79 0.00 2.57
248 249 7.075121 TGAATGACACGTGACATTTACAAATC 58.925 34.615 34.84 24.70 39.68 2.17
249 250 6.964908 TGAATGACACGTGACATTTACAAAT 58.035 32.000 34.84 19.23 39.68 2.32
250 251 6.364945 TGAATGACACGTGACATTTACAAA 57.635 33.333 34.84 20.85 39.68 2.83
251 252 5.993106 TGAATGACACGTGACATTTACAA 57.007 34.783 34.84 22.66 39.68 2.41
252 253 5.698545 TGATGAATGACACGTGACATTTACA 59.301 36.000 34.84 29.73 39.68 2.41
253 254 6.128553 ACTGATGAATGACACGTGACATTTAC 60.129 38.462 34.84 28.17 39.68 2.01
254 255 5.931724 ACTGATGAATGACACGTGACATTTA 59.068 36.000 34.84 32.02 39.68 1.40
255 256 4.756642 ACTGATGAATGACACGTGACATTT 59.243 37.500 34.84 25.16 39.68 2.32
256 257 4.152938 CACTGATGAATGACACGTGACATT 59.847 41.667 35.00 35.00 41.60 2.71
257 258 3.681417 CACTGATGAATGACACGTGACAT 59.319 43.478 24.49 24.49 32.16 3.06
258 259 3.059166 CACTGATGAATGACACGTGACA 58.941 45.455 25.01 23.44 0.00 3.58
259 260 3.059884 ACACTGATGAATGACACGTGAC 58.940 45.455 25.01 17.68 0.00 3.67
260 261 3.059166 CACACTGATGAATGACACGTGA 58.941 45.455 25.01 0.00 0.00 4.35
261 262 2.158254 CCACACTGATGAATGACACGTG 59.842 50.000 15.48 15.48 0.00 4.49
262 263 2.416747 CCACACTGATGAATGACACGT 58.583 47.619 0.00 0.00 0.00 4.49
263 264 1.733912 CCCACACTGATGAATGACACG 59.266 52.381 0.00 0.00 0.00 4.49
264 265 2.744202 GACCCACACTGATGAATGACAC 59.256 50.000 0.00 0.00 0.00 3.67
265 266 2.639347 AGACCCACACTGATGAATGACA 59.361 45.455 0.00 0.00 0.00 3.58
266 267 3.265791 GAGACCCACACTGATGAATGAC 58.734 50.000 0.00 0.00 0.00 3.06
267 268 2.905736 TGAGACCCACACTGATGAATGA 59.094 45.455 0.00 0.00 0.00 2.57
268 269 3.005554 GTGAGACCCACACTGATGAATG 58.994 50.000 0.00 0.00 45.03 2.67
269 270 3.340814 GTGAGACCCACACTGATGAAT 57.659 47.619 0.00 0.00 45.03 2.57
270 271 2.839486 GTGAGACCCACACTGATGAA 57.161 50.000 0.00 0.00 45.03 2.57
279 280 1.739067 GGTTAGCATGTGAGACCCAC 58.261 55.000 0.00 0.00 45.88 4.61
281 282 3.478540 GGGTTAGCATGTGAGACCC 57.521 57.895 11.26 11.26 42.80 4.46
282 283 2.092968 TCATGGGTTAGCATGTGAGACC 60.093 50.000 0.00 0.00 0.00 3.85
283 284 3.118629 TCTCATGGGTTAGCATGTGAGAC 60.119 47.826 4.73 0.00 37.69 3.36
284 285 3.106827 TCTCATGGGTTAGCATGTGAGA 58.893 45.455 4.73 4.73 39.59 3.27
285 286 3.201290 GTCTCATGGGTTAGCATGTGAG 58.799 50.000 0.00 0.00 33.70 3.51
286 287 2.092968 GGTCTCATGGGTTAGCATGTGA 60.093 50.000 0.00 0.00 0.00 3.58
287 288 2.092753 AGGTCTCATGGGTTAGCATGTG 60.093 50.000 0.00 0.00 0.00 3.21
288 289 2.092753 CAGGTCTCATGGGTTAGCATGT 60.093 50.000 0.00 0.00 0.00 3.21
289 290 2.569059 CAGGTCTCATGGGTTAGCATG 58.431 52.381 0.00 0.00 0.00 4.06
290 291 1.492176 CCAGGTCTCATGGGTTAGCAT 59.508 52.381 0.00 0.00 33.94 3.79
291 292 0.911769 CCAGGTCTCATGGGTTAGCA 59.088 55.000 0.00 0.00 33.94 3.49
292 293 0.912486 ACCAGGTCTCATGGGTTAGC 59.088 55.000 5.48 0.00 42.48 3.09
293 294 2.472029 AGACCAGGTCTCATGGGTTAG 58.528 52.381 17.31 0.00 38.71 2.34
294 295 2.642171 AGACCAGGTCTCATGGGTTA 57.358 50.000 17.31 0.00 38.71 2.85
295 296 3.502086 AGACCAGGTCTCATGGGTT 57.498 52.632 17.31 0.00 38.71 4.11
303 304 9.620259 GAAAAAGAATTATATGAGACCAGGTCT 57.380 33.333 23.18 23.18 46.42 3.85
304 305 8.552034 CGAAAAAGAATTATATGAGACCAGGTC 58.448 37.037 12.25 12.25 0.00 3.85
305 306 8.047310 ACGAAAAAGAATTATATGAGACCAGGT 58.953 33.333 0.00 0.00 0.00 4.00
306 307 8.438676 ACGAAAAAGAATTATATGAGACCAGG 57.561 34.615 0.00 0.00 0.00 4.45
307 308 8.269424 CGACGAAAAAGAATTATATGAGACCAG 58.731 37.037 0.00 0.00 0.00 4.00
308 309 7.223971 CCGACGAAAAAGAATTATATGAGACCA 59.776 37.037 0.00 0.00 0.00 4.02
309 310 7.437267 TCCGACGAAAAAGAATTATATGAGACC 59.563 37.037 0.00 0.00 0.00 3.85
310 311 8.267367 GTCCGACGAAAAAGAATTATATGAGAC 58.733 37.037 0.00 0.00 0.00 3.36
311 312 7.977293 TGTCCGACGAAAAAGAATTATATGAGA 59.023 33.333 0.00 0.00 0.00 3.27
312 313 8.056571 GTGTCCGACGAAAAAGAATTATATGAG 58.943 37.037 0.00 0.00 0.00 2.90
313 314 7.902032 GTGTCCGACGAAAAAGAATTATATGA 58.098 34.615 0.00 0.00 0.00 2.15
330 331 0.736325 CAACCATCCTCGTGTCCGAC 60.736 60.000 0.00 0.00 38.40 4.79
331 332 1.589630 CAACCATCCTCGTGTCCGA 59.410 57.895 0.00 0.00 41.73 4.55
332 333 1.447838 CCAACCATCCTCGTGTCCG 60.448 63.158 0.00 0.00 0.00 4.79
333 334 0.323629 TTCCAACCATCCTCGTGTCC 59.676 55.000 0.00 0.00 0.00 4.02
334 335 1.270625 TGTTCCAACCATCCTCGTGTC 60.271 52.381 0.00 0.00 0.00 3.67
335 336 0.762418 TGTTCCAACCATCCTCGTGT 59.238 50.000 0.00 0.00 0.00 4.49
336 337 1.806542 CTTGTTCCAACCATCCTCGTG 59.193 52.381 0.00 0.00 0.00 4.35
337 338 1.882352 GCTTGTTCCAACCATCCTCGT 60.882 52.381 0.00 0.00 0.00 4.18
338 339 0.804989 GCTTGTTCCAACCATCCTCG 59.195 55.000 0.00 0.00 0.00 4.63
339 340 1.909700 TGCTTGTTCCAACCATCCTC 58.090 50.000 0.00 0.00 0.00 3.71
340 341 2.380064 TTGCTTGTTCCAACCATCCT 57.620 45.000 0.00 0.00 0.00 3.24
341 342 3.588955 GAATTGCTTGTTCCAACCATCC 58.411 45.455 0.00 0.00 0.00 3.51
342 343 3.244976 CGAATTGCTTGTTCCAACCATC 58.755 45.455 0.00 0.00 0.00 3.51
343 344 2.627699 ACGAATTGCTTGTTCCAACCAT 59.372 40.909 0.00 0.00 0.00 3.55
344 345 2.028130 ACGAATTGCTTGTTCCAACCA 58.972 42.857 0.00 0.00 0.00 3.67
345 346 2.793278 ACGAATTGCTTGTTCCAACC 57.207 45.000 0.00 0.00 0.00 3.77
346 347 2.719046 CGAACGAATTGCTTGTTCCAAC 59.281 45.455 0.00 0.00 38.97 3.77
347 348 2.614520 TCGAACGAATTGCTTGTTCCAA 59.385 40.909 0.00 0.00 38.97 3.53
348 349 2.214347 TCGAACGAATTGCTTGTTCCA 58.786 42.857 0.00 0.00 38.97 3.53
349 350 2.961522 TCGAACGAATTGCTTGTTCC 57.038 45.000 0.00 0.00 38.97 3.62
350 351 4.065423 TGATCGAACGAATTGCTTGTTC 57.935 40.909 0.12 0.00 38.83 3.18
351 352 3.745975 TCTGATCGAACGAATTGCTTGTT 59.254 39.130 0.12 0.00 0.00 2.83
352 353 3.325870 TCTGATCGAACGAATTGCTTGT 58.674 40.909 0.12 0.00 0.00 3.16
353 354 3.997319 TCTGATCGAACGAATTGCTTG 57.003 42.857 0.12 0.00 0.00 4.01
354 355 4.670221 GCTTTCTGATCGAACGAATTGCTT 60.670 41.667 0.12 0.00 0.00 3.91
355 356 3.181516 GCTTTCTGATCGAACGAATTGCT 60.182 43.478 0.12 0.00 0.00 3.91
356 357 3.094294 GCTTTCTGATCGAACGAATTGC 58.906 45.455 0.12 0.56 0.00 3.56
357 358 4.326413 TGCTTTCTGATCGAACGAATTG 57.674 40.909 0.12 0.00 0.00 2.32
358 359 4.666655 CGTTGCTTTCTGATCGAACGAATT 60.667 41.667 0.12 0.00 38.71 2.17
359 360 3.181530 CGTTGCTTTCTGATCGAACGAAT 60.182 43.478 0.12 0.00 38.71 3.34
360 361 2.154963 CGTTGCTTTCTGATCGAACGAA 59.845 45.455 0.12 0.00 38.71 3.85
361 362 1.719246 CGTTGCTTTCTGATCGAACGA 59.281 47.619 0.00 0.00 38.71 3.85
362 363 1.455786 ACGTTGCTTTCTGATCGAACG 59.544 47.619 0.00 0.00 41.38 3.95
363 364 3.470562 GAACGTTGCTTTCTGATCGAAC 58.529 45.455 5.00 0.00 0.00 3.95
364 365 2.478894 GGAACGTTGCTTTCTGATCGAA 59.521 45.455 13.06 0.00 0.00 3.71
365 366 2.066262 GGAACGTTGCTTTCTGATCGA 58.934 47.619 13.06 0.00 0.00 3.59
366 367 1.798223 TGGAACGTTGCTTTCTGATCG 59.202 47.619 20.82 0.00 0.00 3.69
367 368 2.808543 ACTGGAACGTTGCTTTCTGATC 59.191 45.455 20.82 0.00 0.00 2.92
368 369 2.549754 CACTGGAACGTTGCTTTCTGAT 59.450 45.455 20.82 0.00 0.00 2.90
369 370 1.939934 CACTGGAACGTTGCTTTCTGA 59.060 47.619 20.82 0.00 0.00 3.27
370 371 1.939934 TCACTGGAACGTTGCTTTCTG 59.060 47.619 20.82 10.09 0.00 3.02
371 372 2.325583 TCACTGGAACGTTGCTTTCT 57.674 45.000 20.82 0.00 0.00 2.52
372 373 3.064820 TCTTTCACTGGAACGTTGCTTTC 59.935 43.478 20.82 0.00 31.35 2.62
373 374 3.013921 TCTTTCACTGGAACGTTGCTTT 58.986 40.909 20.82 4.67 31.35 3.51
374 375 2.639065 TCTTTCACTGGAACGTTGCTT 58.361 42.857 20.82 5.04 31.35 3.91
375 376 2.325583 TCTTTCACTGGAACGTTGCT 57.674 45.000 20.82 0.00 31.35 3.91
376 377 3.555518 GAATCTTTCACTGGAACGTTGC 58.444 45.455 13.47 13.47 31.35 4.17
377 378 3.363970 CGGAATCTTTCACTGGAACGTTG 60.364 47.826 5.00 0.00 31.35 4.10
378 379 2.806244 CGGAATCTTTCACTGGAACGTT 59.194 45.455 0.00 0.00 31.35 3.99
379 380 2.224209 ACGGAATCTTTCACTGGAACGT 60.224 45.455 0.00 0.00 31.35 3.99
380 381 2.413837 ACGGAATCTTTCACTGGAACG 58.586 47.619 0.00 0.00 31.35 3.95
381 382 3.813166 TGAACGGAATCTTTCACTGGAAC 59.187 43.478 0.00 0.00 31.35 3.62
382 383 3.813166 GTGAACGGAATCTTTCACTGGAA 59.187 43.478 15.96 0.00 44.08 3.53
383 384 3.399330 GTGAACGGAATCTTTCACTGGA 58.601 45.455 15.96 0.00 44.08 3.86
384 385 3.813529 GTGAACGGAATCTTTCACTGG 57.186 47.619 15.96 0.00 44.08 4.00
387 388 4.865365 CCTCTAGTGAACGGAATCTTTCAC 59.135 45.833 15.66 15.66 46.28 3.18
388 389 4.620803 GCCTCTAGTGAACGGAATCTTTCA 60.621 45.833 0.00 0.00 0.00 2.69
389 390 3.866327 GCCTCTAGTGAACGGAATCTTTC 59.134 47.826 0.00 0.00 0.00 2.62
390 391 3.676324 CGCCTCTAGTGAACGGAATCTTT 60.676 47.826 0.00 0.00 0.00 2.52
391 392 2.159226 CGCCTCTAGTGAACGGAATCTT 60.159 50.000 0.00 0.00 0.00 2.40
392 393 1.405821 CGCCTCTAGTGAACGGAATCT 59.594 52.381 0.00 0.00 0.00 2.40
393 394 1.134560 ACGCCTCTAGTGAACGGAATC 59.865 52.381 10.51 0.00 0.00 2.52
394 395 1.135083 CACGCCTCTAGTGAACGGAAT 60.135 52.381 10.51 0.00 41.83 3.01
395 396 0.242825 CACGCCTCTAGTGAACGGAA 59.757 55.000 10.51 0.00 41.83 4.30
396 397 0.892358 ACACGCCTCTAGTGAACGGA 60.892 55.000 3.20 0.00 41.83 4.69
397 398 0.038526 AACACGCCTCTAGTGAACGG 60.039 55.000 3.20 4.31 41.83 4.44
398 399 1.455786 CAAACACGCCTCTAGTGAACG 59.544 52.381 3.20 0.00 41.83 3.95
399 400 1.798813 CCAAACACGCCTCTAGTGAAC 59.201 52.381 3.20 0.00 41.83 3.18
400 401 1.414919 ACCAAACACGCCTCTAGTGAA 59.585 47.619 3.20 0.00 41.83 3.18
401 402 1.045407 ACCAAACACGCCTCTAGTGA 58.955 50.000 3.20 0.00 41.83 3.41
402 403 1.531149 CAACCAAACACGCCTCTAGTG 59.469 52.381 0.00 0.00 44.57 2.74
403 404 1.878953 CAACCAAACACGCCTCTAGT 58.121 50.000 0.00 0.00 0.00 2.57
404 405 0.517316 GCAACCAAACACGCCTCTAG 59.483 55.000 0.00 0.00 0.00 2.43
405 406 0.887387 GGCAACCAAACACGCCTCTA 60.887 55.000 0.00 0.00 41.50 2.43
406 407 2.193536 GGCAACCAAACACGCCTCT 61.194 57.895 0.00 0.00 41.50 3.69
407 408 2.335011 GGCAACCAAACACGCCTC 59.665 61.111 0.00 0.00 41.50 4.70
444 445 1.765074 CTTTTCCTTCCCCCACGGA 59.235 57.895 0.00 0.00 39.68 4.69
448 449 0.252193 CATGCCTTTTCCTTCCCCCA 60.252 55.000 0.00 0.00 0.00 4.96
450 451 1.644509 AACATGCCTTTTCCTTCCCC 58.355 50.000 0.00 0.00 0.00 4.81
460 461 2.238395 ACCAAACAACCAAACATGCCTT 59.762 40.909 0.00 0.00 0.00 4.35
465 466 4.934602 CAGTGAAACCAAACAACCAAACAT 59.065 37.500 0.00 0.00 37.80 2.71
476 477 2.955660 CAGGCCTAACAGTGAAACCAAA 59.044 45.455 3.98 0.00 37.80 3.28
477 478 2.582052 CAGGCCTAACAGTGAAACCAA 58.418 47.619 3.98 0.00 37.80 3.67
528 529 0.944386 GAGTGTTTTCAGCGAGCCAA 59.056 50.000 0.00 0.00 0.00 4.52
539 540 0.034896 ACTGCCGATCCGAGTGTTTT 59.965 50.000 0.00 0.00 0.00 2.43
544 545 0.173708 GAGAAACTGCCGATCCGAGT 59.826 55.000 0.00 0.00 0.00 4.18
627 630 0.111253 GATTTCCCATCTCCCGCCAT 59.889 55.000 0.00 0.00 0.00 4.40
666 669 1.076995 GGGGGTGCGGCTAGATTTT 60.077 57.895 0.00 0.00 0.00 1.82
714 721 2.188817 GAGGCAGTAGGGAAGAAAGGA 58.811 52.381 0.00 0.00 0.00 3.36
897 910 1.765074 GGAGGGGTGTTGCTTACCA 59.235 57.895 6.87 0.00 40.03 3.25
906 919 0.403750 TAACAAAGGGGGAGGGGTGT 60.404 55.000 0.00 0.00 0.00 4.16
946 961 2.225068 AATCGATCCTACACCTTGCG 57.775 50.000 0.00 0.00 0.00 4.85
968 983 0.594602 ATCGACGGTTCGTTCAGTGA 59.405 50.000 0.00 0.00 46.01 3.41
990 1005 3.021695 CCGTGAGTCCATAACCTAGTCA 58.978 50.000 0.00 0.00 0.00 3.41
1006 1021 3.387699 TGAATTATCAGCCTCATCCGTGA 59.612 43.478 0.00 0.00 0.00 4.35
1044 1059 1.076024 ACCCATGCCTGAATCACACTT 59.924 47.619 0.00 0.00 0.00 3.16
1098 1113 0.905357 AGTGGATCAAAGGTCTCCCG 59.095 55.000 0.00 0.00 35.12 5.14
1126 1141 4.384208 CCTCTCTTGTTCCCGGATAAACAT 60.384 45.833 0.73 0.00 35.46 2.71
1187 1202 0.534412 AAGCATCCACAGAGTCTCGG 59.466 55.000 0.00 0.00 0.00 4.63
1230 1245 3.262660 TCCTGTAGGTCTCGACAAGTCTA 59.737 47.826 0.00 0.00 36.34 2.59
1247 1262 2.477190 TAGCAGCCCCCTTCTCCTGT 62.477 60.000 0.00 0.00 0.00 4.00
1254 1269 1.893315 TATCTTGTAGCAGCCCCCTT 58.107 50.000 0.00 0.00 0.00 3.95
1325 1341 1.916181 CCCTGAACCTCTGGTTATGGT 59.084 52.381 1.61 0.00 46.95 3.55
1358 1374 3.198635 GGTCTCCATTGATCTCCTGAACA 59.801 47.826 0.00 0.00 0.00 3.18
1433 1450 2.621998 GCCAGATGGTTTCCTGATCATG 59.378 50.000 0.00 0.00 37.57 3.07
1444 1461 0.842030 TGGAGTCTGGCCAGATGGTT 60.842 55.000 37.07 22.56 39.97 3.67
1466 1483 0.250793 TTGGGCTTCCGCGAATCTTA 59.749 50.000 8.23 0.00 36.88 2.10
1486 1503 6.575244 TCACCTTGAAGTATGGATACCATT 57.425 37.500 8.59 0.00 42.23 3.16
1510 1527 9.241919 TCCATGAAAAGTGTATATTGTCAATGT 57.758 29.630 8.39 4.17 0.00 2.71
1536 1555 9.577110 CAACTTGAACAATACAAGCATATCAAT 57.423 29.630 0.00 0.00 45.66 2.57
1668 1690 0.685097 TGACTTGTGTAGTGCTCCCC 59.315 55.000 0.00 0.00 37.17 4.81
1671 1693 4.151335 CACATTCTGACTTGTGTAGTGCTC 59.849 45.833 10.34 0.00 38.69 4.26
1698 1720 3.405831 TCTGATCAAAGTCAACAGCAGG 58.594 45.455 0.00 0.00 0.00 4.85
1717 1739 3.772025 AGCTAGCACCTATGTGAACTTCT 59.228 43.478 18.83 0.00 45.76 2.85
1730 1752 1.745264 CTCCTAGCCAGCTAGCACC 59.255 63.158 18.83 4.27 43.35 5.01
1736 1758 2.041405 GACCCCTCCTAGCCAGCT 60.041 66.667 0.00 0.00 0.00 4.24
1917 1939 4.871513 TCATGTGCAGTCCTAATATCGTC 58.128 43.478 0.00 0.00 0.00 4.20
1920 1942 6.051717 ACAACTCATGTGCAGTCCTAATATC 58.948 40.000 0.00 0.00 41.93 1.63
1923 1945 4.292186 ACAACTCATGTGCAGTCCTAAT 57.708 40.909 0.00 0.00 41.93 1.73
1924 1946 3.769739 ACAACTCATGTGCAGTCCTAA 57.230 42.857 0.00 0.00 41.93 2.69
1941 1963 9.268268 CAGGTTGTAGTGTCTAAGATTAAACAA 57.732 33.333 0.00 0.00 0.00 2.83
1960 1982 5.353394 TTCTCAACAGTTACTCAGGTTGT 57.647 39.130 11.87 0.00 40.96 3.32
1963 1985 3.244249 GCCTTCTCAACAGTTACTCAGGT 60.244 47.826 0.00 0.00 0.00 4.00
1982 2006 3.795688 TCTTCAGAGTTCCAAATGCCT 57.204 42.857 0.00 0.00 0.00 4.75
2013 2037 4.476113 TGGAATGACTTCTGATCCAGGATT 59.524 41.667 2.53 0.00 35.33 3.01
2029 2053 4.297768 TGAGTGGAGTATGGATGGAATGA 58.702 43.478 0.00 0.00 0.00 2.57
2037 2061 3.643237 CTTACCCTGAGTGGAGTATGGA 58.357 50.000 0.00 0.00 38.35 3.41
2054 2078 4.202010 TGCAACAAGGAAGAACAAGCTTAC 60.202 41.667 0.00 0.00 0.00 2.34
2122 2146 0.992695 TCGACCTCTTCCTCCTCAGA 59.007 55.000 0.00 0.00 0.00 3.27
2185 2209 5.957842 TTATTCTTCCAAGCGTCATTGTT 57.042 34.783 0.00 0.00 0.00 2.83
2214 2238 1.302285 CATTGCCTCTGCCCACTCT 59.698 57.895 0.00 0.00 36.33 3.24
2248 2273 7.674348 TCCTCCTCTTCTTCAAATTCTACACTA 59.326 37.037 0.00 0.00 0.00 2.74
2253 2278 7.798710 TCTTCCTCCTCTTCTTCAAATTCTA 57.201 36.000 0.00 0.00 0.00 2.10
2256 2281 5.709631 GCTTCTTCCTCCTCTTCTTCAAATT 59.290 40.000 0.00 0.00 0.00 1.82
2301 2352 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2307 2358 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2313 2364 9.546428 CTTCTTCTTCTTCTTCTTCTTCTTCTT 57.454 33.333 0.00 0.00 0.00 2.52
2329 2397 4.141959 GCTGCTACCAGATCTTCTTCTTCT 60.142 45.833 0.00 0.00 41.77 2.85
2335 2403 2.568956 TGTTGCTGCTACCAGATCTTCT 59.431 45.455 11.51 0.00 41.77 2.85
2359 2427 9.799106 CATTGACTAAATAGGGGATAGTTCATT 57.201 33.333 0.00 0.00 30.33 2.57
2380 2448 9.023962 ACAGTTCAAATTATTAAGAGCCATTGA 57.976 29.630 0.00 0.00 0.00 2.57
2434 2502 7.162761 TGTAGTGCCAGCTAGTTAAACAAATA 58.837 34.615 0.00 0.00 0.00 1.40
2468 2536 1.151668 GCTGAGCTTACCACACACAG 58.848 55.000 0.00 0.00 0.00 3.66
2486 2554 4.252971 TGTCACCACTTCTAACTAGTGC 57.747 45.455 0.00 0.00 41.28 4.40
2518 2586 6.299922 TGACATGGTGTTTGATTACAACCTA 58.700 36.000 0.00 0.00 34.80 3.08
2525 2593 7.254624 GCGTACATATGACATGGTGTTTGATTA 60.255 37.037 10.38 0.00 0.00 1.75
2563 2631 2.902846 CCGACGTTTGGTTGCCCA 60.903 61.111 0.00 0.00 39.65 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.