Multiple sequence alignment - TraesCS7A01G181400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G181400 chr7A 100.000 4123 0 0 1 4123 136170481 136166359 0.000000e+00 7614.0
1 TraesCS7A01G181400 chr7A 100.000 131 0 0 2175 2305 136168177 136168047 4.120000e-60 243.0
2 TraesCS7A01G181400 chr7A 100.000 131 0 0 2305 2435 136168307 136168177 4.120000e-60 243.0
3 TraesCS7A01G181400 chr7D 94.004 1601 62 14 705 2303 136418958 136417390 0.000000e+00 2394.0
4 TraesCS7A01G181400 chr7D 90.144 1248 78 16 2447 3662 136417137 136415903 0.000000e+00 1581.0
5 TraesCS7A01G181400 chr7D 91.975 162 8 2 2305 2466 136417513 136417357 5.360000e-54 222.0
6 TraesCS7A01G181400 chr7D 86.897 145 17 2 3971 4113 136413716 136413572 1.190000e-35 161.0
7 TraesCS7A01G181400 chr7B 92.888 1392 59 19 2305 3659 99635390 99636778 0.000000e+00 1986.0
8 TraesCS7A01G181400 chr7B 95.192 832 34 5 1477 2305 99634692 99635520 0.000000e+00 1310.0
9 TraesCS7A01G181400 chr7B 92.689 807 50 7 562 1366 99633844 99634643 0.000000e+00 1155.0
10 TraesCS7A01G181400 chr7B 86.590 522 47 11 3 522 99632601 99633101 4.660000e-154 555.0
11 TraesCS7A01G181400 chr7B 80.044 456 70 11 3678 4113 99637038 99637492 6.650000e-83 318.0
12 TraesCS7A01G181400 chr2D 79.739 153 26 2 3971 4123 11596429 11596282 5.640000e-19 106.0
13 TraesCS7A01G181400 chr4D 80.435 138 21 4 3971 4106 242922245 242922378 2.620000e-17 100.0
14 TraesCS7A01G181400 chr6B 78.676 136 28 1 3971 4106 413639565 413639699 5.680000e-14 89.8
15 TraesCS7A01G181400 chr4B 81.651 109 18 1 3998 4106 249062243 249062349 5.680000e-14 89.8
16 TraesCS7A01G181400 chr1B 78.049 123 25 1 3984 4106 272610753 272610873 4.420000e-10 76.8
17 TraesCS7A01G181400 chr3A 89.583 48 2 1 4076 4123 667625434 667625390 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G181400 chr7A 136166359 136170481 4122 True 2700.0 7614 100.0000 1 4123 3 chr7A.!!$R1 4122
1 TraesCS7A01G181400 chr7D 136413572 136418958 5386 True 1089.5 2394 90.7550 705 4113 4 chr7D.!!$R1 3408
2 TraesCS7A01G181400 chr7B 99632601 99637492 4891 False 1064.8 1986 89.4806 3 4113 5 chr7B.!!$F1 4110

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
553 594 0.031585 CTTGTCTTCACCACCGTCGA 59.968 55.0 0.00 0.0 0.00 4.20 F
557 598 0.031585 TCTTCACCACCGTCGACAAG 59.968 55.0 17.16 9.6 0.00 3.16 F
574 1281 0.105408 AAGGCAAAGCAAAGCACAGG 59.895 50.0 0.00 0.0 0.00 4.00 F
2325 3035 0.109723 CTTTGGTTCCCCCGAGTTCA 59.890 55.0 0.00 0.0 35.15 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2312 3022 0.183971 TTGCTTTGAACTCGGGGGAA 59.816 50.000 0.00 0.0 0.0 3.97 R
2314 3024 0.598065 CTTTGCTTTGAACTCGGGGG 59.402 55.000 0.00 0.0 0.0 5.40 R
2386 3096 1.133976 GCATTGGTATGGAGCAGGAGT 60.134 52.381 0.00 0.0 33.8 3.85 R
3712 5484 0.321919 GGGCTGAGCACATGAACAGA 60.322 55.000 6.82 0.0 32.9 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.093849 TGGTTAACCCTCTTTCGGAATAG 57.906 43.478 21.97 0.00 34.29 1.73
42 43 0.321122 CGGAATAGCAGCCCCAGATC 60.321 60.000 0.00 0.00 0.00 2.75
62 63 7.258441 CAGATCAGAGAATCAAATTGCATGTT 58.742 34.615 0.00 0.00 37.82 2.71
63 64 7.759886 CAGATCAGAGAATCAAATTGCATGTTT 59.240 33.333 0.00 0.00 37.82 2.83
68 69 7.762615 CAGAGAATCAAATTGCATGTTTACCAT 59.237 33.333 0.00 0.00 37.82 3.55
162 163 8.573035 ACAAATTTCGCCAGATAGAAGTAAAAA 58.427 29.630 0.00 0.00 0.00 1.94
184 185 7.749539 AAAACTAAAGCACACACAAATACAC 57.250 32.000 0.00 0.00 0.00 2.90
189 190 4.552166 AGCACACACAAATACACAAGAC 57.448 40.909 0.00 0.00 0.00 3.01
190 191 3.315191 AGCACACACAAATACACAAGACC 59.685 43.478 0.00 0.00 0.00 3.85
191 192 3.066064 GCACACACAAATACACAAGACCA 59.934 43.478 0.00 0.00 0.00 4.02
192 193 4.261572 GCACACACAAATACACAAGACCAT 60.262 41.667 0.00 0.00 0.00 3.55
193 194 5.735922 GCACACACAAATACACAAGACCATT 60.736 40.000 0.00 0.00 0.00 3.16
194 195 5.686841 CACACACAAATACACAAGACCATTG 59.313 40.000 0.00 0.00 0.00 2.82
195 196 5.592282 ACACACAAATACACAAGACCATTGA 59.408 36.000 0.00 0.00 0.00 2.57
196 197 6.144854 CACACAAATACACAAGACCATTGAG 58.855 40.000 0.00 0.00 0.00 3.02
238 239 2.097466 AGTTGTTTGAAGTCGTTGCCTG 59.903 45.455 0.00 0.00 0.00 4.85
254 256 5.631992 GTTGCCTGTAGCTTCATCTTTTAC 58.368 41.667 0.00 0.00 44.23 2.01
288 290 1.324736 CTCGAGCCTGCGATGTAAAAC 59.675 52.381 0.00 0.00 39.85 2.43
292 294 2.420022 GAGCCTGCGATGTAAAACATGT 59.580 45.455 0.00 0.00 39.27 3.21
322 324 5.100344 AGACTGATCTCAAAGACATGCAT 57.900 39.130 0.00 0.00 0.00 3.96
325 327 6.762187 AGACTGATCTCAAAGACATGCATAAG 59.238 38.462 0.00 0.00 0.00 1.73
326 328 6.413052 ACTGATCTCAAAGACATGCATAAGT 58.587 36.000 0.00 0.00 0.00 2.24
329 331 8.791327 TGATCTCAAAGACATGCATAAGTTAA 57.209 30.769 0.00 0.00 0.00 2.01
379 381 1.174783 GAGTTGCTCACCTCGGTAGA 58.825 55.000 0.00 0.00 0.00 2.59
398 400 5.475564 GGTAGATGAGGACCTAAGATCACTC 59.524 48.000 0.00 0.00 32.58 3.51
409 411 3.795623 AAGATCACTCAATGCAATGCC 57.204 42.857 1.53 0.00 0.00 4.40
410 412 2.029623 AGATCACTCAATGCAATGCCC 58.970 47.619 1.53 0.00 0.00 5.36
420 422 1.686800 GCAATGCCCCTGGGACAAT 60.687 57.895 16.20 0.00 38.70 2.71
434 436 0.529378 GACAATCCTTGCAAGGCAGG 59.471 55.000 36.24 27.75 46.06 4.85
435 437 1.217244 CAATCCTTGCAAGGCAGGC 59.783 57.895 36.24 0.00 46.06 4.85
436 438 1.986210 AATCCTTGCAAGGCAGGCC 60.986 57.895 36.24 0.97 46.06 5.19
439 441 3.741476 CTTGCAAGGCAGGCCGTC 61.741 66.667 19.14 0.00 40.61 4.79
443 445 3.423154 CAAGGCAGGCCGTCGAAC 61.423 66.667 4.37 0.00 41.95 3.95
444 446 4.699522 AAGGCAGGCCGTCGAACC 62.700 66.667 4.37 0.00 41.95 3.62
447 449 4.814294 GCAGGCCGTCGAACCGAT 62.814 66.667 0.00 0.00 38.42 4.18
448 450 2.802792 CAGGCCGTCGAACCGATA 59.197 61.111 0.00 0.00 38.42 2.92
449 451 1.362717 CAGGCCGTCGAACCGATAT 59.637 57.895 0.00 0.00 38.42 1.63
450 452 0.249322 CAGGCCGTCGAACCGATATT 60.249 55.000 0.00 0.00 38.42 1.28
451 453 0.462789 AGGCCGTCGAACCGATATTT 59.537 50.000 0.00 0.00 38.42 1.40
452 454 1.134610 AGGCCGTCGAACCGATATTTT 60.135 47.619 0.00 0.00 38.42 1.82
453 455 2.101249 AGGCCGTCGAACCGATATTTTA 59.899 45.455 0.00 0.00 38.42 1.52
491 493 9.243637 CGGAGAAGAATATTGAAAACACAAAAA 57.756 29.630 0.00 0.00 33.44 1.94
512 553 3.203716 AGTGAAAAGAAGAACCACCGAC 58.796 45.455 0.00 0.00 0.00 4.79
522 563 5.187967 AGAAGAACCACCGACTAGATCAAAT 59.812 40.000 0.00 0.00 0.00 2.32
542 583 6.645415 TCAAATTCGACCTTAGACTTGTCTTC 59.355 38.462 8.66 0.00 0.00 2.87
547 588 4.308265 GACCTTAGACTTGTCTTCACCAC 58.692 47.826 8.66 0.00 0.00 4.16
550 591 1.120530 AGACTTGTCTTCACCACCGT 58.879 50.000 0.00 0.00 0.00 4.83
552 593 0.249322 ACTTGTCTTCACCACCGTCG 60.249 55.000 0.00 0.00 0.00 5.12
553 594 0.031585 CTTGTCTTCACCACCGTCGA 59.968 55.000 0.00 0.00 0.00 4.20
554 595 0.249155 TTGTCTTCACCACCGTCGAC 60.249 55.000 5.18 5.18 0.00 4.20
555 596 1.361271 GTCTTCACCACCGTCGACA 59.639 57.895 17.16 0.00 0.00 4.35
556 597 0.249155 GTCTTCACCACCGTCGACAA 60.249 55.000 17.16 0.00 0.00 3.18
557 598 0.031585 TCTTCACCACCGTCGACAAG 59.968 55.000 17.16 9.60 0.00 3.16
558 599 0.944311 CTTCACCACCGTCGACAAGG 60.944 60.000 17.16 15.51 0.00 3.61
559 600 2.981977 TTCACCACCGTCGACAAGGC 62.982 60.000 17.16 0.00 0.00 4.35
560 601 3.542676 ACCACCGTCGACAAGGCA 61.543 61.111 17.16 0.00 0.00 4.75
561 602 2.280524 CCACCGTCGACAAGGCAA 60.281 61.111 17.16 0.00 0.00 4.52
562 603 1.890041 CCACCGTCGACAAGGCAAA 60.890 57.895 17.16 0.00 0.00 3.68
563 604 1.569493 CACCGTCGACAAGGCAAAG 59.431 57.895 17.16 0.00 0.00 2.77
572 1279 0.536260 ACAAGGCAAAGCAAAGCACA 59.464 45.000 0.00 0.00 0.00 4.57
574 1281 0.105408 AAGGCAAAGCAAAGCACAGG 59.895 50.000 0.00 0.00 0.00 4.00
576 1283 0.598419 GGCAAAGCAAAGCACAGGAC 60.598 55.000 0.00 0.00 0.00 3.85
583 1290 2.076863 GCAAAGCACAGGACGATAACT 58.923 47.619 0.00 0.00 0.00 2.24
588 1295 2.497675 AGCACAGGACGATAACTCACAT 59.502 45.455 0.00 0.00 0.00 3.21
593 1300 6.144080 GCACAGGACGATAACTCACATATAAC 59.856 42.308 0.00 0.00 0.00 1.89
602 1309 9.208022 CGATAACTCACATATAACCAATCACAT 57.792 33.333 0.00 0.00 0.00 3.21
637 1344 4.929819 ACCAATTGTTGTTTACCACTCC 57.070 40.909 4.43 0.00 0.00 3.85
665 1372 7.596749 AATAAATCTTGGACGTAGAGTTGTG 57.403 36.000 9.20 0.00 32.76 3.33
666 1373 4.602340 AATCTTGGACGTAGAGTTGTGT 57.398 40.909 0.00 0.00 0.00 3.72
667 1374 5.717078 AATCTTGGACGTAGAGTTGTGTA 57.283 39.130 0.00 0.00 0.00 2.90
672 1379 6.643770 TCTTGGACGTAGAGTTGTGTATTTTC 59.356 38.462 0.00 0.00 0.00 2.29
709 1416 7.279981 CGAGAGTTGGGAATACACAATTTGATA 59.720 37.037 2.79 0.00 41.64 2.15
714 1421 8.686334 GTTGGGAATACACAATTTGATAGATGT 58.314 33.333 2.79 0.00 41.64 3.06
715 1422 9.913310 TTGGGAATACACAATTTGATAGATGTA 57.087 29.630 2.79 1.65 34.22 2.29
773 1481 4.927425 TGGAACTACTATTGAGCGTTCAAC 59.073 41.667 17.30 1.84 45.54 3.18
814 1522 3.550275 CGTTGAATGTTCGATCGTATGGT 59.450 43.478 15.94 0.00 0.00 3.55
837 1545 4.930696 TGGGAGAAGAAGATAAAAACCCC 58.069 43.478 0.00 0.00 34.54 4.95
878 1586 1.267261 CAATTACCGCCGGTCAAAACA 59.733 47.619 14.44 0.00 37.09 2.83
961 1669 4.874977 GCGCTACTGACCTCGCCC 62.875 72.222 0.00 0.00 41.53 6.13
962 1670 3.141488 CGCTACTGACCTCGCCCT 61.141 66.667 0.00 0.00 0.00 5.19
963 1671 2.809010 GCTACTGACCTCGCCCTC 59.191 66.667 0.00 0.00 0.00 4.30
964 1672 3.111939 CTACTGACCTCGCCCTCG 58.888 66.667 0.00 0.00 0.00 4.63
1269 1977 2.030628 GGCGAACCCAAAATTCTTCGAA 60.031 45.455 0.00 0.00 38.18 3.71
1286 1994 7.435068 TCTTCGAATTTTTCAGTTCTTAGGG 57.565 36.000 0.00 0.00 0.00 3.53
1294 2002 3.839323 TCAGTTCTTAGGGGTCTGGTA 57.161 47.619 0.00 0.00 0.00 3.25
1297 2005 4.293102 TCAGTTCTTAGGGGTCTGGTACTA 59.707 45.833 0.00 0.00 0.00 1.82
1376 2084 7.769970 TGAATTCCAGCAAATTTTGAGTCTTTT 59.230 29.630 13.26 0.00 0.00 2.27
1381 2089 7.867403 TCCAGCAAATTTTGAGTCTTTTCATAC 59.133 33.333 13.26 0.00 0.00 2.39
1396 2104 5.856126 TTTCATACCTGTTCACGTGATTC 57.144 39.130 20.80 15.72 0.00 2.52
1434 2142 4.082125 ACCCTGGAAGCTATTTTCACTTG 58.918 43.478 0.00 0.00 0.00 3.16
1482 2190 8.277720 ACTGTACCTGATACTAGAAGATAGGA 57.722 38.462 0.00 0.00 34.56 2.94
1483 2191 8.380099 ACTGTACCTGATACTAGAAGATAGGAG 58.620 40.741 0.00 0.00 34.56 3.69
1533 2242 8.239038 AGCTAAGTAATGTCAGTTATGAGCTA 57.761 34.615 0.00 0.00 35.66 3.32
1549 2258 9.565213 GTTATGAGCTATTTTGATGGATATTGC 57.435 33.333 0.00 0.00 0.00 3.56
1565 2274 7.059788 TGGATATTGCACACACTTATGGTTAT 58.940 34.615 0.00 0.00 0.00 1.89
1570 2279 7.929941 TTGCACACACTTATGGTTATTATCA 57.070 32.000 0.00 0.00 0.00 2.15
1571 2280 7.315247 TGCACACACTTATGGTTATTATCAC 57.685 36.000 0.00 0.00 0.00 3.06
1745 2455 4.081917 CAGTACTCTTCCCTTCCTCTTCAC 60.082 50.000 0.00 0.00 0.00 3.18
1830 2540 1.619807 GGCCAAGCATTTGCCAGGAT 61.620 55.000 13.28 0.00 43.38 3.24
1870 2580 4.632688 TGGCGCCTTTGAGTTTAGTAATAC 59.367 41.667 29.70 0.00 0.00 1.89
1878 2588 9.893305 CCTTTGAGTTTAGTAATACCAGTTTTG 57.107 33.333 0.00 0.00 0.00 2.44
1918 2628 1.141657 ACTGCTCTGTGGTGACAACAT 59.858 47.619 0.00 0.00 46.06 2.71
2117 2827 7.007723 ACATTCCACTACATAAGTCCCAAAAA 58.992 34.615 0.00 0.00 35.76 1.94
2281 2991 3.244665 CCTGCTCCATACCAATGCTGATA 60.245 47.826 0.00 0.00 0.00 2.15
2282 2992 3.743521 TGCTCCATACCAATGCTGATAC 58.256 45.455 0.00 0.00 0.00 2.24
2283 2993 3.136260 TGCTCCATACCAATGCTGATACA 59.864 43.478 0.00 0.00 0.00 2.29
2284 2994 4.202493 TGCTCCATACCAATGCTGATACAT 60.202 41.667 0.00 0.00 0.00 2.29
2285 2995 4.763793 GCTCCATACCAATGCTGATACATT 59.236 41.667 0.00 0.00 40.90 2.71
2286 2996 5.242393 GCTCCATACCAATGCTGATACATTT 59.758 40.000 0.00 0.00 38.19 2.32
2287 2997 6.569226 GCTCCATACCAATGCTGATACATTTC 60.569 42.308 0.00 0.00 38.19 2.17
2288 2998 6.604171 TCCATACCAATGCTGATACATTTCT 58.396 36.000 0.00 0.00 38.19 2.52
2289 2999 6.487668 TCCATACCAATGCTGATACATTTCTG 59.512 38.462 0.00 0.00 38.19 3.02
2290 3000 6.263842 CCATACCAATGCTGATACATTTCTGT 59.736 38.462 0.00 0.00 38.19 3.41
2291 3001 5.571784 ACCAATGCTGATACATTTCTGTG 57.428 39.130 0.00 0.00 38.19 3.66
2292 3002 4.400251 ACCAATGCTGATACATTTCTGTGG 59.600 41.667 0.00 0.00 38.19 4.17
2293 3003 4.641541 CCAATGCTGATACATTTCTGTGGA 59.358 41.667 0.00 0.00 38.19 4.02
2294 3004 5.301045 CCAATGCTGATACATTTCTGTGGAT 59.699 40.000 0.00 0.00 38.19 3.41
2295 3005 6.487668 CCAATGCTGATACATTTCTGTGGATA 59.512 38.462 0.00 0.00 38.19 2.59
2296 3006 7.358066 CAATGCTGATACATTTCTGTGGATAC 58.642 38.462 0.00 0.00 38.19 2.24
2297 3007 6.239217 TGCTGATACATTTCTGTGGATACT 57.761 37.500 0.00 0.00 36.79 2.12
2298 3008 6.653020 TGCTGATACATTTCTGTGGATACTT 58.347 36.000 0.00 0.00 36.79 2.24
2299 3009 7.112122 TGCTGATACATTTCTGTGGATACTTT 58.888 34.615 0.00 0.00 36.79 2.66
2300 3010 7.066163 TGCTGATACATTTCTGTGGATACTTTG 59.934 37.037 0.00 0.00 36.79 2.77
2301 3011 7.320443 TGATACATTTCTGTGGATACTTTGC 57.680 36.000 0.00 0.00 36.79 3.68
2302 3012 6.883756 TGATACATTTCTGTGGATACTTTGCA 59.116 34.615 0.00 0.00 36.79 4.08
2303 3013 5.633830 ACATTTCTGTGGATACTTTGCAG 57.366 39.130 0.00 0.00 33.22 4.41
2304 3014 5.072741 ACATTTCTGTGGATACTTTGCAGT 58.927 37.500 0.00 0.00 33.22 4.40
2305 3015 5.182001 ACATTTCTGTGGATACTTTGCAGTC 59.818 40.000 0.00 0.00 33.22 3.51
2306 3016 3.334583 TCTGTGGATACTTTGCAGTCC 57.665 47.619 0.00 0.00 34.06 3.85
2307 3017 2.906389 TCTGTGGATACTTTGCAGTCCT 59.094 45.455 0.00 0.00 34.06 3.85
2308 3018 3.327757 TCTGTGGATACTTTGCAGTCCTT 59.672 43.478 0.00 0.00 34.06 3.36
2309 3019 4.074970 CTGTGGATACTTTGCAGTCCTTT 58.925 43.478 0.00 0.00 34.06 3.11
2310 3020 3.820467 TGTGGATACTTTGCAGTCCTTTG 59.180 43.478 0.00 0.00 34.06 2.77
2311 3021 3.191371 GTGGATACTTTGCAGTCCTTTGG 59.809 47.826 0.00 0.00 34.06 3.28
2312 3022 3.181434 TGGATACTTTGCAGTCCTTTGGT 60.181 43.478 0.00 0.00 34.06 3.67
2313 3023 3.826729 GGATACTTTGCAGTCCTTTGGTT 59.173 43.478 0.00 0.00 34.06 3.67
2314 3024 4.082733 GGATACTTTGCAGTCCTTTGGTTC 60.083 45.833 0.00 0.00 34.06 3.62
2315 3025 2.031870 ACTTTGCAGTCCTTTGGTTCC 58.968 47.619 0.00 0.00 0.00 3.62
2316 3026 1.341209 CTTTGCAGTCCTTTGGTTCCC 59.659 52.381 0.00 0.00 0.00 3.97
2317 3027 0.469144 TTGCAGTCCTTTGGTTCCCC 60.469 55.000 0.00 0.00 0.00 4.81
2318 3028 1.606601 GCAGTCCTTTGGTTCCCCC 60.607 63.158 0.00 0.00 0.00 5.40
2319 3029 1.303317 CAGTCCTTTGGTTCCCCCG 60.303 63.158 0.00 0.00 35.15 5.73
2320 3030 1.462627 AGTCCTTTGGTTCCCCCGA 60.463 57.895 0.00 0.00 35.15 5.14
2321 3031 1.002502 GTCCTTTGGTTCCCCCGAG 60.003 63.158 0.00 0.00 35.15 4.63
2322 3032 1.462627 TCCTTTGGTTCCCCCGAGT 60.463 57.895 0.00 0.00 35.15 4.18
2323 3033 1.063654 TCCTTTGGTTCCCCCGAGTT 61.064 55.000 0.00 0.00 35.15 3.01
2324 3034 0.608308 CCTTTGGTTCCCCCGAGTTC 60.608 60.000 0.00 0.00 35.15 3.01
2325 3035 0.109723 CTTTGGTTCCCCCGAGTTCA 59.890 55.000 0.00 0.00 35.15 3.18
2326 3036 0.551879 TTTGGTTCCCCCGAGTTCAA 59.448 50.000 0.00 0.00 35.15 2.69
2327 3037 0.551879 TTGGTTCCCCCGAGTTCAAA 59.448 50.000 0.00 0.00 35.15 2.69
2328 3038 0.109723 TGGTTCCCCCGAGTTCAAAG 59.890 55.000 0.00 0.00 35.15 2.77
2329 3039 1.241990 GGTTCCCCCGAGTTCAAAGC 61.242 60.000 0.00 0.00 0.00 3.51
2330 3040 0.536460 GTTCCCCCGAGTTCAAAGCA 60.536 55.000 0.00 0.00 0.00 3.91
2331 3041 0.183971 TTCCCCCGAGTTCAAAGCAA 59.816 50.000 0.00 0.00 0.00 3.91
2332 3042 0.183971 TCCCCCGAGTTCAAAGCAAA 59.816 50.000 0.00 0.00 0.00 3.68
2333 3043 0.598065 CCCCCGAGTTCAAAGCAAAG 59.402 55.000 0.00 0.00 0.00 2.77
2334 3044 0.598065 CCCCGAGTTCAAAGCAAAGG 59.402 55.000 0.00 0.00 0.00 3.11
2335 3045 1.318576 CCCGAGTTCAAAGCAAAGGT 58.681 50.000 0.00 0.00 0.00 3.50
2336 3046 2.500229 CCCGAGTTCAAAGCAAAGGTA 58.500 47.619 0.00 0.00 0.00 3.08
2337 3047 2.882137 CCCGAGTTCAAAGCAAAGGTAA 59.118 45.455 0.00 0.00 0.00 2.85
2338 3048 3.316868 CCCGAGTTCAAAGCAAAGGTAAA 59.683 43.478 0.00 0.00 0.00 2.01
2339 3049 4.022329 CCCGAGTTCAAAGCAAAGGTAAAT 60.022 41.667 0.00 0.00 0.00 1.40
2340 3050 5.154222 CCGAGTTCAAAGCAAAGGTAAATC 58.846 41.667 0.00 0.00 0.00 2.17
2341 3051 5.048713 CCGAGTTCAAAGCAAAGGTAAATCT 60.049 40.000 0.00 0.00 0.00 2.40
2342 3052 6.438763 CGAGTTCAAAGCAAAGGTAAATCTT 58.561 36.000 0.00 0.00 0.00 2.40
2343 3053 6.360681 CGAGTTCAAAGCAAAGGTAAATCTTG 59.639 38.462 0.00 0.00 0.00 3.02
2344 3054 7.112452 AGTTCAAAGCAAAGGTAAATCTTGT 57.888 32.000 0.00 0.00 0.00 3.16
2345 3055 8.232913 AGTTCAAAGCAAAGGTAAATCTTGTA 57.767 30.769 0.00 0.00 0.00 2.41
2346 3056 8.860088 AGTTCAAAGCAAAGGTAAATCTTGTAT 58.140 29.630 0.00 0.00 0.00 2.29
2349 3059 9.515226 TCAAAGCAAAGGTAAATCTTGTATAGT 57.485 29.630 0.00 0.00 0.00 2.12
2350 3060 9.559958 CAAAGCAAAGGTAAATCTTGTATAGTG 57.440 33.333 0.00 0.00 0.00 2.74
2351 3061 8.863872 AAGCAAAGGTAAATCTTGTATAGTGT 57.136 30.769 0.00 0.00 0.00 3.55
2352 3062 8.268850 AGCAAAGGTAAATCTTGTATAGTGTG 57.731 34.615 0.00 0.00 0.00 3.82
2353 3063 7.883311 AGCAAAGGTAAATCTTGTATAGTGTGT 59.117 33.333 0.00 0.00 0.00 3.72
2354 3064 9.158233 GCAAAGGTAAATCTTGTATAGTGTGTA 57.842 33.333 0.00 0.00 0.00 2.90
2363 3073 9.719355 AATCTTGTATAGTGTGTATTGTGAACA 57.281 29.630 0.00 0.00 0.00 3.18
2364 3074 9.890629 ATCTTGTATAGTGTGTATTGTGAACAT 57.109 29.630 0.00 0.00 0.00 2.71
2400 3110 4.877282 GAGTCATAACTCCTGCTCCATAC 58.123 47.826 0.00 0.00 45.26 2.39
2401 3111 3.643792 AGTCATAACTCCTGCTCCATACC 59.356 47.826 0.00 0.00 0.00 2.73
2402 3112 3.388024 GTCATAACTCCTGCTCCATACCA 59.612 47.826 0.00 0.00 0.00 3.25
2403 3113 4.037222 TCATAACTCCTGCTCCATACCAA 58.963 43.478 0.00 0.00 0.00 3.67
2404 3114 4.660303 TCATAACTCCTGCTCCATACCAAT 59.340 41.667 0.00 0.00 0.00 3.16
2405 3115 3.287867 AACTCCTGCTCCATACCAATG 57.712 47.619 0.00 0.00 0.00 2.82
2406 3116 1.133976 ACTCCTGCTCCATACCAATGC 60.134 52.381 0.00 0.00 0.00 3.56
2407 3117 1.142465 CTCCTGCTCCATACCAATGCT 59.858 52.381 0.00 0.00 0.00 3.79
2408 3118 1.134007 TCCTGCTCCATACCAATGCTG 60.134 52.381 0.00 0.00 0.00 4.41
2409 3119 1.134007 CCTGCTCCATACCAATGCTGA 60.134 52.381 0.00 0.00 0.00 4.26
2410 3120 2.488528 CCTGCTCCATACCAATGCTGAT 60.489 50.000 0.00 0.00 0.00 2.90
2546 3496 7.230510 TGTGTCTCTGTGTTGCCTTTATTATTT 59.769 33.333 0.00 0.00 0.00 1.40
2584 3534 1.349688 TGACGTGCTAATTGGACCCTT 59.650 47.619 0.00 0.00 33.10 3.95
2621 3571 4.080695 GGCAGGAGGCTATATGATCAATCA 60.081 45.833 0.00 0.00 44.01 2.57
2693 3643 3.806949 AGGTTAGTCCTTCATTGGCAA 57.193 42.857 0.68 0.68 45.67 4.52
2694 3644 4.112634 AGGTTAGTCCTTCATTGGCAAA 57.887 40.909 3.01 0.00 45.67 3.68
2695 3645 4.677182 AGGTTAGTCCTTCATTGGCAAAT 58.323 39.130 3.01 0.00 45.67 2.32
2705 3673 5.350365 CCTTCATTGGCAAATTCTGTGAATG 59.650 40.000 3.01 2.16 31.76 2.67
2746 3714 1.686052 TGATGGTCCTTTTGTTGCACC 59.314 47.619 0.00 0.00 0.00 5.01
2782 3751 8.194104 TGCAATTAAACTGTGTGTGATACTTTT 58.806 29.630 0.00 0.00 0.00 2.27
2823 3792 8.988934 TGTACACACAAATTCTTATTGAGTCTC 58.011 33.333 0.00 0.00 30.73 3.36
2910 3879 3.959449 TCATGCTGATAGCTTCTCAGACT 59.041 43.478 23.16 10.72 42.97 3.24
3032 4001 3.786048 GCGTTGTATCTGTAAATTGCTGC 59.214 43.478 0.00 0.00 0.00 5.25
3172 4141 9.784531 AAGGTATGATTGGTGACTTATCTTATG 57.215 33.333 0.00 0.00 0.00 1.90
3210 4179 9.326339 CTACATAATTTCATTTCTCGCATGATG 57.674 33.333 0.00 0.00 30.63 3.07
3220 4189 0.249955 TCGCATGATGGCTGTCTTGA 59.750 50.000 0.00 0.00 0.00 3.02
3276 4245 9.586435 TGTATACACTAATGAACTGTGATCAAG 57.414 33.333 0.08 0.00 35.83 3.02
3318 4294 1.809869 CGAGAGCCTGACGGATTCA 59.190 57.895 0.00 0.00 0.00 2.57
3324 4300 4.814900 CTGACGGATTCAGTCCCG 57.185 61.111 13.34 0.00 46.12 5.14
3359 4336 8.868522 TTGAAACTCTATGGTCTTGATTGATT 57.131 30.769 0.00 0.00 0.00 2.57
3391 4368 7.014230 CCCTGTTTCCTTCTTATTTTGTCTTCA 59.986 37.037 0.00 0.00 0.00 3.02
3434 4422 5.296748 TCCTGTTGCTTTTGCCTTTAATTC 58.703 37.500 0.00 0.00 46.87 2.17
3445 4433 9.780413 CTTTTGCCTTTAATTCTATCTTCTGTC 57.220 33.333 0.00 0.00 0.00 3.51
3448 4436 8.723942 TGCCTTTAATTCTATCTTCTGTCTTC 57.276 34.615 0.00 0.00 0.00 2.87
3452 4440 7.996758 TTAATTCTATCTTCTGTCTTCCCCT 57.003 36.000 0.00 0.00 0.00 4.79
3549 4539 6.769822 AGACTTTGAGCATTTCTATACCCATG 59.230 38.462 0.00 0.00 0.00 3.66
3567 4557 3.067601 CCATGTATAGCGTGTACCAGACA 59.932 47.826 0.00 0.00 34.94 3.41
3568 4558 4.440940 CCATGTATAGCGTGTACCAGACAA 60.441 45.833 0.00 0.00 40.66 3.18
3572 4562 2.273370 AGCGTGTACCAGACAATACG 57.727 50.000 0.00 0.00 40.66 3.06
3588 4578 7.994851 GACAATACGTCAATGAGAGTTTTTC 57.005 36.000 0.00 0.00 44.69 2.29
3607 4597 6.588719 TTTTCTGTTAAGTGGAATGGATGG 57.411 37.500 0.00 0.00 0.00 3.51
3640 4630 3.391382 GTAGCAGGCGGTGGAGGT 61.391 66.667 0.00 0.00 0.00 3.85
3648 4638 1.896660 GCGGTGGAGGTTGCTTCAA 60.897 57.895 0.00 0.00 0.00 2.69
3659 4649 1.326245 GTTGCTTCAACCCAAAAACGC 59.674 47.619 0.00 0.00 38.30 4.84
3662 4652 1.858458 GCTTCAACCCAAAAACGCTTC 59.142 47.619 0.00 0.00 0.00 3.86
3664 4654 3.516615 CTTCAACCCAAAAACGCTTCAA 58.483 40.909 0.00 0.00 0.00 2.69
3665 4655 2.882324 TCAACCCAAAAACGCTTCAAC 58.118 42.857 0.00 0.00 0.00 3.18
3666 4656 1.930503 CAACCCAAAAACGCTTCAACC 59.069 47.619 0.00 0.00 0.00 3.77
3667 4657 0.462375 ACCCAAAAACGCTTCAACCC 59.538 50.000 0.00 0.00 0.00 4.11
3669 4659 1.134670 CCCAAAAACGCTTCAACCCAA 60.135 47.619 0.00 0.00 0.00 4.12
3670 4660 2.622436 CCAAAAACGCTTCAACCCAAA 58.378 42.857 0.00 0.00 0.00 3.28
3671 4661 3.003480 CCAAAAACGCTTCAACCCAAAA 58.997 40.909 0.00 0.00 0.00 2.44
3672 4662 3.437049 CCAAAAACGCTTCAACCCAAAAA 59.563 39.130 0.00 0.00 0.00 1.94
3673 4663 4.095632 CCAAAAACGCTTCAACCCAAAAAT 59.904 37.500 0.00 0.00 0.00 1.82
3674 4664 5.392487 CCAAAAACGCTTCAACCCAAAAATT 60.392 36.000 0.00 0.00 0.00 1.82
3675 4665 5.478233 AAAACGCTTCAACCCAAAAATTC 57.522 34.783 0.00 0.00 0.00 2.17
3693 5465 1.985473 TCTTTGGACAACATGCAGCT 58.015 45.000 0.00 0.00 0.00 4.24
3698 5470 0.393537 GGACAACATGCAGCTAGCCT 60.394 55.000 12.13 0.00 44.83 4.58
3712 5484 2.158696 GCTAGCCTTGGAGATGATGGTT 60.159 50.000 2.29 0.00 0.00 3.67
3713 5485 2.725221 AGCCTTGGAGATGATGGTTC 57.275 50.000 0.00 0.00 0.00 3.62
3722 5494 4.019051 TGGAGATGATGGTTCTGTTCATGT 60.019 41.667 0.00 0.00 30.48 3.21
3731 5503 0.321919 TCTGTTCATGTGCTCAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
3732 5504 0.607217 CTGTTCATGTGCTCAGCCCA 60.607 55.000 0.00 0.00 0.00 5.36
3733 5505 0.038599 TGTTCATGTGCTCAGCCCAT 59.961 50.000 0.00 0.00 0.00 4.00
3739 5512 0.622136 TGTGCTCAGCCCATCATTCT 59.378 50.000 0.00 0.00 0.00 2.40
3753 5526 5.397221 CCCATCATTCTGTTGAGGAGTGTAT 60.397 44.000 0.00 0.00 29.04 2.29
3762 5535 4.534500 TGTTGAGGAGTGTATGGTATGGTT 59.466 41.667 0.00 0.00 0.00 3.67
3773 5546 1.357420 TGGTATGGTTTGGTGCCTGAT 59.643 47.619 0.00 0.00 0.00 2.90
3774 5547 2.578480 TGGTATGGTTTGGTGCCTGATA 59.422 45.455 0.00 0.00 0.00 2.15
3780 5553 1.136891 GTTTGGTGCCTGATAATGCCC 59.863 52.381 0.00 0.00 0.00 5.36
3792 5565 3.444742 TGATAATGCCCAAGTTTCTGCAG 59.555 43.478 7.63 7.63 37.12 4.41
3797 5570 3.230134 TGCCCAAGTTTCTGCAGTAATT 58.770 40.909 14.67 4.23 0.00 1.40
3813 5586 8.709386 TGCAGTAATTGTTAAAAGCTTTTGAA 57.291 26.923 30.21 20.39 0.00 2.69
3833 5606 3.713826 ACGGAGTTCCATACCATTGTT 57.286 42.857 0.00 0.00 37.78 2.83
3834 5607 4.028993 ACGGAGTTCCATACCATTGTTT 57.971 40.909 0.00 0.00 37.78 2.83
3835 5608 4.403734 ACGGAGTTCCATACCATTGTTTT 58.596 39.130 0.00 0.00 37.78 2.43
3875 6329 8.422577 ACCTTTCTCTTAATTTGCCTTTGTAT 57.577 30.769 0.00 0.00 0.00 2.29
3891 6345 7.147915 TGCCTTTGTATCATAACTTTCCATTCC 60.148 37.037 0.00 0.00 0.00 3.01
3908 6365 7.256494 TCCATTCCTTAAAGGCATTGAAAAT 57.744 32.000 0.00 0.00 34.61 1.82
3955 6415 4.473444 AGGCATCACTTTTCTTTTCTGGA 58.527 39.130 0.00 0.00 0.00 3.86
3990 6862 9.396022 CAATAATTGATGTCAAGGGTACTAAGT 57.604 33.333 1.65 0.00 39.47 2.24
4003 6875 5.422650 AGGGTACTAAGTGAGATGAGGTTTC 59.577 44.000 0.00 0.00 0.00 2.78
4016 6888 2.364002 TGAGGTTTCTCGTCATGTGTGA 59.636 45.455 0.00 0.00 42.79 3.58
4025 6897 4.157656 TCTCGTCATGTGTGATATGTGTCA 59.842 41.667 0.00 0.00 36.60 3.58
4048 6920 5.276240 CACATTTGTTAGCGTGTGTATCA 57.724 39.130 0.00 0.00 37.70 2.15
4049 6921 5.868257 CACATTTGTTAGCGTGTGTATCAT 58.132 37.500 0.00 0.00 37.70 2.45
4060 6934 4.154737 GCGTGTGTATCATATGCCATCATT 59.845 41.667 0.00 0.00 32.61 2.57
4063 6937 4.392754 TGTGTATCATATGCCATCATTCGC 59.607 41.667 0.00 0.00 34.22 4.70
4065 6939 2.865119 TCATATGCCATCATTCGCCT 57.135 45.000 0.00 0.00 34.22 5.52
4070 6944 1.766494 TGCCATCATTCGCCTTGATT 58.234 45.000 0.00 0.00 31.50 2.57
4113 6987 8.378172 CACAATCTCACGTGGGTTATTATTAT 57.622 34.615 16.53 0.00 0.00 1.28
4114 6988 8.495949 CACAATCTCACGTGGGTTATTATTATC 58.504 37.037 16.53 0.00 0.00 1.75
4115 6989 8.429641 ACAATCTCACGTGGGTTATTATTATCT 58.570 33.333 16.53 0.00 0.00 1.98
4116 6990 8.926710 CAATCTCACGTGGGTTATTATTATCTC 58.073 37.037 16.53 0.00 0.00 2.75
4117 6991 6.989659 TCTCACGTGGGTTATTATTATCTCC 58.010 40.000 16.53 0.00 0.00 3.71
4118 6992 6.014840 TCTCACGTGGGTTATTATTATCTCCC 60.015 42.308 16.53 0.00 35.85 4.30
4119 6993 5.603395 TCACGTGGGTTATTATTATCTCCCA 59.397 40.000 17.00 0.00 41.96 4.37
4120 6994 6.271391 TCACGTGGGTTATTATTATCTCCCAT 59.729 38.462 17.00 0.00 45.11 4.00
4121 6995 7.455323 TCACGTGGGTTATTATTATCTCCCATA 59.545 37.037 17.00 0.00 45.11 2.74
4122 6996 7.548075 CACGTGGGTTATTATTATCTCCCATAC 59.452 40.741 7.95 0.17 45.11 2.39
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.452189 TCCGAAAGAGGGTTAACCAAATAAATT 59.548 33.333 25.71 10.71 43.89 1.82
1 2 6.949463 TCCGAAAGAGGGTTAACCAAATAAAT 59.051 34.615 25.71 5.71 43.89 1.40
10 11 4.510571 TGCTATTCCGAAAGAGGGTTAAC 58.489 43.478 0.00 0.00 0.00 2.01
30 31 0.473326 ATTCTCTGATCTGGGGCTGC 59.527 55.000 0.00 0.00 0.00 5.25
42 43 7.092079 TGGTAAACATGCAATTTGATTCTCTG 58.908 34.615 9.06 0.00 0.00 3.35
162 163 6.443934 TGTGTATTTGTGTGTGCTTTAGTT 57.556 33.333 0.00 0.00 0.00 2.24
163 164 6.317642 TCTTGTGTATTTGTGTGTGCTTTAGT 59.682 34.615 0.00 0.00 0.00 2.24
184 185 7.373493 AGCTTTTAATTGTCTCAATGGTCTTG 58.627 34.615 0.00 0.00 0.00 3.02
189 190 7.029563 GGTGTAGCTTTTAATTGTCTCAATGG 58.970 38.462 0.00 0.00 0.00 3.16
190 191 6.742718 CGGTGTAGCTTTTAATTGTCTCAATG 59.257 38.462 0.00 0.00 0.00 2.82
191 192 6.653320 TCGGTGTAGCTTTTAATTGTCTCAAT 59.347 34.615 0.00 0.00 0.00 2.57
192 193 5.992829 TCGGTGTAGCTTTTAATTGTCTCAA 59.007 36.000 0.00 0.00 0.00 3.02
193 194 5.543714 TCGGTGTAGCTTTTAATTGTCTCA 58.456 37.500 0.00 0.00 0.00 3.27
194 195 6.147328 ACTTCGGTGTAGCTTTTAATTGTCTC 59.853 38.462 0.00 0.00 0.00 3.36
195 196 5.995897 ACTTCGGTGTAGCTTTTAATTGTCT 59.004 36.000 0.00 0.00 0.00 3.41
196 197 6.237313 ACTTCGGTGTAGCTTTTAATTGTC 57.763 37.500 0.00 0.00 0.00 3.18
238 239 9.899226 AAGTGAAAATGTAAAAGATGAAGCTAC 57.101 29.630 0.00 0.00 0.00 3.58
254 256 4.913924 CAGGCTCGAGAAAAAGTGAAAATG 59.086 41.667 18.75 0.00 0.00 2.32
267 269 0.815095 TTTACATCGCAGGCTCGAGA 59.185 50.000 18.75 0.00 42.14 4.04
288 290 6.141560 TGAGATCAGTCTAGCTTGTACATG 57.858 41.667 0.00 0.00 33.97 3.21
292 294 6.434340 TGTCTTTGAGATCAGTCTAGCTTGTA 59.566 38.462 0.00 0.00 33.97 2.41
336 338 6.814146 TCACGTGGCTTTTTAAAACTTTTGAT 59.186 30.769 17.00 0.00 0.00 2.57
342 344 4.976224 ACTCACGTGGCTTTTTAAAACT 57.024 36.364 17.00 0.00 0.00 2.66
346 348 3.073144 GCAACTCACGTGGCTTTTTAA 57.927 42.857 17.00 0.00 37.11 1.52
374 376 5.390387 AGTGATCTTAGGTCCTCATCTACC 58.610 45.833 0.00 0.00 35.91 3.18
375 377 6.065374 TGAGTGATCTTAGGTCCTCATCTAC 58.935 44.000 8.80 0.00 0.00 2.59
379 381 5.454471 GCATTGAGTGATCTTAGGTCCTCAT 60.454 44.000 12.20 3.79 0.00 2.90
387 389 4.261489 GGGCATTGCATTGAGTGATCTTAG 60.261 45.833 12.66 0.00 0.00 2.18
390 392 2.029623 GGGCATTGCATTGAGTGATCT 58.970 47.619 12.66 0.00 0.00 2.75
398 400 1.686455 TCCCAGGGGCATTGCATTG 60.686 57.895 11.39 4.20 34.68 2.82
434 436 6.399204 AATATAAAATATCGGTTCGACGGC 57.601 37.500 0.00 0.00 39.18 5.68
461 463 7.606073 TGTGTTTTCAATATTCTTCTCCGATGA 59.394 33.333 0.00 0.00 0.00 2.92
464 466 7.737972 TTGTGTTTTCAATATTCTTCTCCGA 57.262 32.000 0.00 0.00 0.00 4.55
480 482 8.556194 GGTTCTTCTTTTCACTTTTTGTGTTTT 58.444 29.630 0.00 0.00 46.27 2.43
481 483 7.713073 TGGTTCTTCTTTTCACTTTTTGTGTTT 59.287 29.630 0.00 0.00 46.27 2.83
491 493 3.118371 AGTCGGTGGTTCTTCTTTTCACT 60.118 43.478 0.00 0.00 0.00 3.41
497 500 4.087182 TGATCTAGTCGGTGGTTCTTCTT 58.913 43.478 0.00 0.00 0.00 2.52
508 511 4.308899 AGGTCGAATTTGATCTAGTCGG 57.691 45.455 6.69 1.97 32.68 4.79
512 553 7.976734 ACAAGTCTAAGGTCGAATTTGATCTAG 59.023 37.037 8.97 7.32 0.00 2.43
522 563 4.261909 GGTGAAGACAAGTCTAAGGTCGAA 60.262 45.833 2.72 0.00 39.39 3.71
542 583 3.041940 GCCTTGTCGACGGTGGTG 61.042 66.667 11.62 0.00 0.00 4.17
547 588 1.781025 TTGCTTTGCCTTGTCGACGG 61.781 55.000 11.62 8.13 0.00 4.79
550 591 0.030638 GCTTTGCTTTGCCTTGTCGA 59.969 50.000 0.00 0.00 0.00 4.20
552 593 1.211743 GTGCTTTGCTTTGCCTTGTC 58.788 50.000 0.00 0.00 0.00 3.18
553 594 0.536260 TGTGCTTTGCTTTGCCTTGT 59.464 45.000 0.00 0.00 0.00 3.16
554 595 1.214367 CTGTGCTTTGCTTTGCCTTG 58.786 50.000 0.00 0.00 0.00 3.61
555 596 0.105408 CCTGTGCTTTGCTTTGCCTT 59.895 50.000 0.00 0.00 0.00 4.35
556 597 0.756442 TCCTGTGCTTTGCTTTGCCT 60.756 50.000 0.00 0.00 0.00 4.75
557 598 0.598419 GTCCTGTGCTTTGCTTTGCC 60.598 55.000 0.00 0.00 0.00 4.52
558 599 0.936297 CGTCCTGTGCTTTGCTTTGC 60.936 55.000 0.00 0.00 0.00 3.68
559 600 0.662619 TCGTCCTGTGCTTTGCTTTG 59.337 50.000 0.00 0.00 0.00 2.77
560 601 1.609208 ATCGTCCTGTGCTTTGCTTT 58.391 45.000 0.00 0.00 0.00 3.51
561 602 2.472695 TATCGTCCTGTGCTTTGCTT 57.527 45.000 0.00 0.00 0.00 3.91
562 603 2.076863 GTTATCGTCCTGTGCTTTGCT 58.923 47.619 0.00 0.00 0.00 3.91
563 604 2.076863 AGTTATCGTCCTGTGCTTTGC 58.923 47.619 0.00 0.00 0.00 3.68
572 1279 6.971726 TGGTTATATGTGAGTTATCGTCCT 57.028 37.500 0.00 0.00 0.00 3.85
574 1281 8.700644 GTGATTGGTTATATGTGAGTTATCGTC 58.299 37.037 0.00 0.00 0.00 4.20
576 1283 8.587952 TGTGATTGGTTATATGTGAGTTATCG 57.412 34.615 0.00 0.00 0.00 2.92
593 1300 8.152898 TGGTTAGATGATTAGAGATGTGATTGG 58.847 37.037 0.00 0.00 0.00 3.16
602 1309 9.739276 AACAACAATTGGTTAGATGATTAGAGA 57.261 29.630 10.83 0.00 37.72 3.10
637 1344 7.982371 ACTCTACGTCCAAGATTTATTAACG 57.018 36.000 0.00 0.00 35.00 3.18
665 1372 8.548721 CAACTCTCGGGTTGTATATGAAAATAC 58.451 37.037 1.51 0.00 40.92 1.89
666 1373 7.713507 CCAACTCTCGGGTTGTATATGAAAATA 59.286 37.037 8.69 0.00 43.36 1.40
667 1374 6.542370 CCAACTCTCGGGTTGTATATGAAAAT 59.458 38.462 8.69 0.00 43.36 1.82
672 1379 3.386726 TCCCAACTCTCGGGTTGTATATG 59.613 47.826 8.69 0.00 44.81 1.78
680 1387 1.553704 GTGTATTCCCAACTCTCGGGT 59.446 52.381 0.00 0.00 44.81 5.28
773 1481 1.777101 GGCTTAGATCAGTAGCTGCG 58.223 55.000 0.00 0.00 35.30 5.18
814 1522 5.330233 GGGGTTTTTATCTTCTTCTCCCAA 58.670 41.667 0.00 0.00 34.62 4.12
837 1545 0.392998 CCATGACAGGTTCTTCCCCG 60.393 60.000 0.00 0.00 36.75 5.73
878 1586 1.127951 CTTGTTTATTTCTCGCGGCGT 59.872 47.619 22.90 4.86 0.00 5.68
961 1669 3.251043 GCGAGGAAAGCGAGCGAG 61.251 66.667 0.00 0.00 0.00 5.03
1122 1830 1.406065 CCATCATCGCCCTGAGGTCT 61.406 60.000 0.00 0.00 34.57 3.85
1197 1905 2.014554 CTTGGACGTGACGTGGTCG 61.015 63.158 18.09 0.00 41.37 4.79
1269 1977 5.162980 ACCAGACCCCTAAGAACTGAAAAAT 60.163 40.000 0.00 0.00 0.00 1.82
1286 1994 3.254166 TGTCGACACTTTAGTACCAGACC 59.746 47.826 15.76 0.00 0.00 3.85
1294 2002 5.607477 TCAGGAATTTGTCGACACTTTAGT 58.393 37.500 19.90 3.20 0.00 2.24
1297 2005 4.881850 ACTTCAGGAATTTGTCGACACTTT 59.118 37.500 19.90 14.63 0.00 2.66
1348 2056 6.041296 AGACTCAAAATTTGCTGGAATTCAGT 59.959 34.615 7.93 0.00 45.08 3.41
1356 2064 7.116805 GGTATGAAAAGACTCAAAATTTGCTGG 59.883 37.037 0.00 0.00 0.00 4.85
1360 2068 9.533253 AACAGGTATGAAAAGACTCAAAATTTG 57.467 29.630 0.00 0.00 0.00 2.32
1366 2074 5.465390 CGTGAACAGGTATGAAAAGACTCAA 59.535 40.000 0.00 0.00 0.00 3.02
1367 2075 4.988540 CGTGAACAGGTATGAAAAGACTCA 59.011 41.667 0.00 0.00 0.00 3.41
1368 2076 4.989168 ACGTGAACAGGTATGAAAAGACTC 59.011 41.667 0.00 0.00 0.00 3.36
1376 2084 4.494484 CTGAATCACGTGAACAGGTATGA 58.506 43.478 30.84 8.11 32.79 2.15
1381 2089 0.798776 GCCTGAATCACGTGAACAGG 59.201 55.000 40.12 40.12 45.95 4.00
1475 2183 7.013220 TGCCAATAAGAGATGTACTCCTATCT 58.987 38.462 0.00 0.00 45.96 1.98
1476 2184 7.233389 TGCCAATAAGAGATGTACTCCTATC 57.767 40.000 0.00 0.00 45.96 2.08
1477 2185 7.291182 ACTTGCCAATAAGAGATGTACTCCTAT 59.709 37.037 0.00 0.00 45.96 2.57
1478 2186 6.611642 ACTTGCCAATAAGAGATGTACTCCTA 59.388 38.462 0.00 0.00 45.96 2.94
1479 2187 5.426833 ACTTGCCAATAAGAGATGTACTCCT 59.573 40.000 0.00 0.00 45.96 3.69
1480 2188 5.525378 CACTTGCCAATAAGAGATGTACTCC 59.475 44.000 0.00 0.00 45.96 3.85
1481 2189 6.109359 ACACTTGCCAATAAGAGATGTACTC 58.891 40.000 0.00 0.00 45.22 2.59
1482 2190 6.054860 ACACTTGCCAATAAGAGATGTACT 57.945 37.500 0.00 0.00 0.00 2.73
1483 2191 7.843490 TTACACTTGCCAATAAGAGATGTAC 57.157 36.000 0.00 0.00 0.00 2.90
1533 2242 6.534475 AGTGTGTGCAATATCCATCAAAAT 57.466 33.333 0.00 0.00 0.00 1.82
1569 2278 7.590322 ACGTAGACATAACATAGCGAATTAGTG 59.410 37.037 0.00 0.00 0.00 2.74
1570 2279 7.646314 ACGTAGACATAACATAGCGAATTAGT 58.354 34.615 0.00 0.00 0.00 2.24
1571 2280 7.801783 TGACGTAGACATAACATAGCGAATTAG 59.198 37.037 0.00 0.00 0.00 1.73
1577 2286 5.091910 TCTGACGTAGACATAACATAGCG 57.908 43.478 0.00 0.00 0.00 4.26
1592 2302 7.490962 TGTTGTTTGAATAGATTTCTGACGT 57.509 32.000 0.00 0.00 0.00 4.34
1745 2455 4.690748 ACATCTTTGTCACCTAACACGATG 59.309 41.667 11.13 11.13 40.11 3.84
1830 2540 2.436417 GCCACAGCCACTTGAATCTAA 58.564 47.619 0.00 0.00 0.00 2.10
1870 2580 4.466828 CGCATTTAGAGACACAAAACTGG 58.533 43.478 0.00 0.00 0.00 4.00
1878 2588 0.727398 GCCACCGCATTTAGAGACAC 59.273 55.000 0.00 0.00 34.03 3.67
1918 2628 1.013596 CTCAACACTGAACCGCAACA 58.986 50.000 0.00 0.00 0.00 3.33
2281 2991 5.072741 ACTGCAAAGTATCCACAGAAATGT 58.927 37.500 0.00 0.00 32.67 2.71
2282 2992 5.392380 GGACTGCAAAGTATCCACAGAAATG 60.392 44.000 0.00 0.00 32.67 2.32
2283 2993 4.702131 GGACTGCAAAGTATCCACAGAAAT 59.298 41.667 0.00 0.00 32.67 2.17
2284 2994 4.072131 GGACTGCAAAGTATCCACAGAAA 58.928 43.478 0.00 0.00 32.67 2.52
2285 2995 3.327757 AGGACTGCAAAGTATCCACAGAA 59.672 43.478 0.00 0.00 33.33 3.02
2286 2996 2.906389 AGGACTGCAAAGTATCCACAGA 59.094 45.455 0.00 0.00 33.33 3.41
2287 2997 3.340814 AGGACTGCAAAGTATCCACAG 57.659 47.619 0.00 0.00 33.33 3.66
2288 2998 3.788227 AAGGACTGCAAAGTATCCACA 57.212 42.857 0.00 0.00 33.33 4.17
2289 2999 3.191371 CCAAAGGACTGCAAAGTATCCAC 59.809 47.826 0.00 0.00 33.33 4.02
2290 3000 3.181434 ACCAAAGGACTGCAAAGTATCCA 60.181 43.478 0.00 0.00 33.33 3.41
2291 3001 3.421844 ACCAAAGGACTGCAAAGTATCC 58.578 45.455 0.00 0.00 0.00 2.59
2292 3002 4.082733 GGAACCAAAGGACTGCAAAGTATC 60.083 45.833 0.00 0.00 0.00 2.24
2293 3003 3.826729 GGAACCAAAGGACTGCAAAGTAT 59.173 43.478 0.00 0.00 0.00 2.12
2294 3004 3.219281 GGAACCAAAGGACTGCAAAGTA 58.781 45.455 0.00 0.00 0.00 2.24
2295 3005 2.031870 GGAACCAAAGGACTGCAAAGT 58.968 47.619 0.00 0.00 0.00 2.66
2296 3006 2.800881 GGAACCAAAGGACTGCAAAG 57.199 50.000 0.00 0.00 0.00 2.77
2311 3021 0.536460 TGCTTTGAACTCGGGGGAAC 60.536 55.000 0.00 0.00 0.00 3.62
2312 3022 0.183971 TTGCTTTGAACTCGGGGGAA 59.816 50.000 0.00 0.00 0.00 3.97
2313 3023 0.183971 TTTGCTTTGAACTCGGGGGA 59.816 50.000 0.00 0.00 0.00 4.81
2314 3024 0.598065 CTTTGCTTTGAACTCGGGGG 59.402 55.000 0.00 0.00 0.00 5.40
2315 3025 0.598065 CCTTTGCTTTGAACTCGGGG 59.402 55.000 0.00 0.00 0.00 5.73
2316 3026 1.318576 ACCTTTGCTTTGAACTCGGG 58.681 50.000 0.00 0.00 0.00 5.14
2317 3027 4.561735 TTTACCTTTGCTTTGAACTCGG 57.438 40.909 0.00 0.00 0.00 4.63
2318 3028 6.002062 AGATTTACCTTTGCTTTGAACTCG 57.998 37.500 0.00 0.00 0.00 4.18
2319 3029 7.203218 ACAAGATTTACCTTTGCTTTGAACTC 58.797 34.615 0.00 0.00 0.00 3.01
2320 3030 7.112452 ACAAGATTTACCTTTGCTTTGAACT 57.888 32.000 0.00 0.00 0.00 3.01
2323 3033 9.515226 ACTATACAAGATTTACCTTTGCTTTGA 57.485 29.630 0.00 0.00 0.00 2.69
2324 3034 9.559958 CACTATACAAGATTTACCTTTGCTTTG 57.440 33.333 0.00 0.00 0.00 2.77
2325 3035 9.297037 ACACTATACAAGATTTACCTTTGCTTT 57.703 29.630 0.00 0.00 0.00 3.51
2326 3036 8.730680 CACACTATACAAGATTTACCTTTGCTT 58.269 33.333 0.00 0.00 0.00 3.91
2327 3037 7.883311 ACACACTATACAAGATTTACCTTTGCT 59.117 33.333 0.00 0.00 0.00 3.91
2328 3038 8.040716 ACACACTATACAAGATTTACCTTTGC 57.959 34.615 0.00 0.00 0.00 3.68
2337 3047 9.719355 TGTTCACAATACACACTATACAAGATT 57.281 29.630 0.00 0.00 0.00 2.40
2338 3048 9.890629 ATGTTCACAATACACACTATACAAGAT 57.109 29.630 0.00 0.00 0.00 2.40
2379 3089 3.643792 GGTATGGAGCAGGAGTTATGACT 59.356 47.826 0.00 0.00 39.32 3.41
2380 3090 3.388024 TGGTATGGAGCAGGAGTTATGAC 59.612 47.826 0.00 0.00 0.00 3.06
2381 3091 3.653164 TGGTATGGAGCAGGAGTTATGA 58.347 45.455 0.00 0.00 0.00 2.15
2382 3092 4.422073 TTGGTATGGAGCAGGAGTTATG 57.578 45.455 0.00 0.00 33.80 1.90
2383 3093 4.747931 GCATTGGTATGGAGCAGGAGTTAT 60.748 45.833 0.00 0.00 33.80 1.89
2384 3094 3.433598 GCATTGGTATGGAGCAGGAGTTA 60.434 47.826 0.00 0.00 33.80 2.24
2385 3095 2.684927 GCATTGGTATGGAGCAGGAGTT 60.685 50.000 0.00 0.00 33.80 3.01
2386 3096 1.133976 GCATTGGTATGGAGCAGGAGT 60.134 52.381 0.00 0.00 33.80 3.85
2387 3097 1.142465 AGCATTGGTATGGAGCAGGAG 59.858 52.381 0.00 0.00 33.80 3.69
2388 3098 1.134007 CAGCATTGGTATGGAGCAGGA 60.134 52.381 0.00 0.00 33.80 3.86
2389 3099 1.134007 TCAGCATTGGTATGGAGCAGG 60.134 52.381 0.00 0.00 33.80 4.85
2390 3100 2.336945 TCAGCATTGGTATGGAGCAG 57.663 50.000 0.00 0.00 33.80 4.24
2391 3101 3.136260 TGTATCAGCATTGGTATGGAGCA 59.864 43.478 0.00 0.00 32.15 4.26
2392 3102 3.743521 TGTATCAGCATTGGTATGGAGC 58.256 45.455 0.00 0.00 32.15 4.70
2393 3103 6.713903 AGAAATGTATCAGCATTGGTATGGAG 59.286 38.462 0.00 0.00 38.87 3.86
2394 3104 6.487668 CAGAAATGTATCAGCATTGGTATGGA 59.512 38.462 0.00 0.00 38.87 3.41
2395 3105 6.263842 ACAGAAATGTATCAGCATTGGTATGG 59.736 38.462 0.00 0.00 38.87 2.74
2396 3106 7.136772 CACAGAAATGTATCAGCATTGGTATG 58.863 38.462 0.00 0.00 38.87 2.39
2397 3107 6.263842 CCACAGAAATGTATCAGCATTGGTAT 59.736 38.462 0.00 0.00 38.87 2.73
2398 3108 5.589855 CCACAGAAATGTATCAGCATTGGTA 59.410 40.000 0.00 0.00 38.87 3.25
2399 3109 4.400251 CCACAGAAATGTATCAGCATTGGT 59.600 41.667 0.00 0.00 38.87 3.67
2400 3110 4.641541 TCCACAGAAATGTATCAGCATTGG 59.358 41.667 0.00 0.00 38.87 3.16
2401 3111 5.823209 TCCACAGAAATGTATCAGCATTG 57.177 39.130 0.00 0.00 38.87 2.82
2402 3112 7.285566 AGTATCCACAGAAATGTATCAGCATT 58.714 34.615 0.00 0.00 40.43 3.56
2403 3113 6.835174 AGTATCCACAGAAATGTATCAGCAT 58.165 36.000 0.00 0.00 0.00 3.79
2404 3114 6.239217 AGTATCCACAGAAATGTATCAGCA 57.761 37.500 0.00 0.00 0.00 4.41
2405 3115 7.412853 CAAAGTATCCACAGAAATGTATCAGC 58.587 38.462 0.00 0.00 0.00 4.26
2406 3116 7.066163 TGCAAAGTATCCACAGAAATGTATCAG 59.934 37.037 0.00 0.00 0.00 2.90
2407 3117 6.883756 TGCAAAGTATCCACAGAAATGTATCA 59.116 34.615 0.00 0.00 0.00 2.15
2408 3118 7.066284 ACTGCAAAGTATCCACAGAAATGTATC 59.934 37.037 0.00 0.00 32.67 2.24
2409 3119 6.886459 ACTGCAAAGTATCCACAGAAATGTAT 59.114 34.615 0.00 0.00 32.67 2.29
2410 3120 6.237901 ACTGCAAAGTATCCACAGAAATGTA 58.762 36.000 0.00 0.00 32.67 2.29
2546 3496 7.495606 AGCACGTCAGAATATAATCATCAAACA 59.504 33.333 0.00 0.00 0.00 2.83
2584 3534 1.078918 CTGCCATCAACTCCGCTGA 60.079 57.895 0.00 0.00 0.00 4.26
2621 3571 2.311542 TGAATTTGCAGGGAGGGTATGT 59.688 45.455 0.00 0.00 0.00 2.29
2684 3634 4.527427 TCCATTCACAGAATTTGCCAATGA 59.473 37.500 0.00 0.00 33.76 2.57
2688 3638 5.486735 AATTCCATTCACAGAATTTGCCA 57.513 34.783 0.00 0.00 39.14 4.92
2689 3639 6.633856 AGTAATTCCATTCACAGAATTTGCC 58.366 36.000 3.57 0.00 41.64 4.52
2690 3640 9.294030 CTAAGTAATTCCATTCACAGAATTTGC 57.706 33.333 3.57 0.00 41.64 3.68
2693 3643 9.739276 TGTCTAAGTAATTCCATTCACAGAATT 57.261 29.630 3.73 3.73 43.36 2.17
2694 3644 9.911788 ATGTCTAAGTAATTCCATTCACAGAAT 57.088 29.630 0.00 0.00 34.18 2.40
2695 3645 9.166173 CATGTCTAAGTAATTCCATTCACAGAA 57.834 33.333 0.00 0.00 0.00 3.02
2763 3731 9.567848 CTTTTACAAAAGTATCACACACAGTTT 57.432 29.630 6.33 0.00 40.31 2.66
3032 4001 3.197766 TGTACCATTCCTGAACTAGCCAG 59.802 47.826 5.91 5.91 0.00 4.85
3210 4179 5.086104 TCAACCTAATACTCAAGACAGCC 57.914 43.478 0.00 0.00 0.00 4.85
3244 4213 9.313118 CACAGTTCATTAGTGTATACAATGCTA 57.687 33.333 15.79 6.82 38.37 3.49
3246 4215 8.196802 TCACAGTTCATTAGTGTATACAATGC 57.803 34.615 15.79 0.00 38.37 3.56
3269 4238 1.351430 CGGTTCGCTTCGCTTGATCA 61.351 55.000 0.00 0.00 0.00 2.92
3322 4298 6.036517 CCATAGAGTTTCAAAAGTCAGATCGG 59.963 42.308 11.75 0.00 40.10 4.18
3323 4299 6.591834 ACCATAGAGTTTCAAAAGTCAGATCG 59.408 38.462 11.75 2.35 40.10 3.69
3324 4300 7.821846 AGACCATAGAGTTTCAAAAGTCAGATC 59.178 37.037 11.75 0.00 40.10 2.75
3359 4336 8.367156 CAAAATAAGAAGGAAACAGGGAAATGA 58.633 33.333 0.00 0.00 0.00 2.57
3434 4422 4.803452 AGAGAGGGGAAGACAGAAGATAG 58.197 47.826 0.00 0.00 0.00 2.08
3445 4433 1.135960 GGGATGGAAGAGAGGGGAAG 58.864 60.000 0.00 0.00 0.00 3.46
3448 4436 1.601248 AAAGGGATGGAAGAGAGGGG 58.399 55.000 0.00 0.00 0.00 4.79
3524 4514 6.313519 TGGGTATAGAAATGCTCAAAGTCT 57.686 37.500 0.00 0.00 0.00 3.24
3549 4539 4.908156 CGTATTGTCTGGTACACGCTATAC 59.092 45.833 0.00 0.00 38.00 1.47
3567 4557 7.730364 ACAGAAAAACTCTCATTGACGTATT 57.270 32.000 0.00 0.00 29.07 1.89
3568 4558 7.730364 AACAGAAAAACTCTCATTGACGTAT 57.270 32.000 0.00 0.00 29.07 3.06
3572 4562 7.857885 CCACTTAACAGAAAAACTCTCATTGAC 59.142 37.037 0.00 0.00 29.07 3.18
3581 4571 7.255942 CCATCCATTCCACTTAACAGAAAAACT 60.256 37.037 0.00 0.00 0.00 2.66
3587 4577 5.512942 TTCCATCCATTCCACTTAACAGA 57.487 39.130 0.00 0.00 0.00 3.41
3588 4578 5.105756 GGTTTCCATCCATTCCACTTAACAG 60.106 44.000 0.00 0.00 0.00 3.16
3607 4597 4.636206 CCTGCTACCTAATCAACAGGTTTC 59.364 45.833 0.00 0.00 44.18 2.78
3627 4617 3.850098 AAGCAACCTCCACCGCCTG 62.850 63.158 0.00 0.00 0.00 4.85
3640 4630 1.205893 AGCGTTTTTGGGTTGAAGCAA 59.794 42.857 0.00 0.00 0.00 3.91
3648 4638 0.462375 GGGTTGAAGCGTTTTTGGGT 59.538 50.000 0.00 0.00 0.00 4.51
3659 4649 6.112058 TGTCCAAAGAATTTTTGGGTTGAAG 58.888 36.000 21.63 5.38 46.71 3.02
3662 4652 5.645497 TGTTGTCCAAAGAATTTTTGGGTTG 59.355 36.000 21.63 2.97 46.71 3.77
3664 4654 5.428184 TGTTGTCCAAAGAATTTTTGGGT 57.572 34.783 21.63 0.00 46.71 4.51
3665 4655 5.277925 GCATGTTGTCCAAAGAATTTTTGGG 60.278 40.000 21.63 12.25 46.71 4.12
3667 4657 6.360844 TGCATGTTGTCCAAAGAATTTTTG 57.639 33.333 0.00 6.27 35.03 2.44
3669 4659 4.512571 GCTGCATGTTGTCCAAAGAATTTT 59.487 37.500 0.00 0.00 35.03 1.82
3670 4660 4.060205 GCTGCATGTTGTCCAAAGAATTT 58.940 39.130 0.00 0.00 40.26 1.82
3671 4661 3.322828 AGCTGCATGTTGTCCAAAGAATT 59.677 39.130 1.02 0.00 0.00 2.17
3672 4662 2.895404 AGCTGCATGTTGTCCAAAGAAT 59.105 40.909 1.02 0.00 0.00 2.40
3673 4663 2.309613 AGCTGCATGTTGTCCAAAGAA 58.690 42.857 1.02 0.00 0.00 2.52
3674 4664 1.985473 AGCTGCATGTTGTCCAAAGA 58.015 45.000 1.02 0.00 0.00 2.52
3675 4665 2.415090 GCTAGCTGCATGTTGTCCAAAG 60.415 50.000 7.70 0.00 42.31 2.77
3689 5461 2.550423 CCATCATCTCCAAGGCTAGCTG 60.550 54.545 15.72 5.79 0.00 4.24
3693 5465 3.135348 CAGAACCATCATCTCCAAGGCTA 59.865 47.826 0.00 0.00 0.00 3.93
3698 5470 4.639078 TGAACAGAACCATCATCTCCAA 57.361 40.909 0.00 0.00 0.00 3.53
3712 5484 0.321919 GGGCTGAGCACATGAACAGA 60.322 55.000 6.82 0.00 32.90 3.41
3713 5485 0.607217 TGGGCTGAGCACATGAACAG 60.607 55.000 4.67 4.42 36.87 3.16
3722 5494 0.622136 ACAGAATGATGGGCTGAGCA 59.378 50.000 6.82 0.00 39.69 4.26
3731 5503 5.526479 CCATACACTCCTCAACAGAATGATG 59.474 44.000 0.00 0.00 40.64 3.07
3732 5504 5.190528 ACCATACACTCCTCAACAGAATGAT 59.809 40.000 0.00 0.00 39.69 2.45
3733 5505 4.532126 ACCATACACTCCTCAACAGAATGA 59.468 41.667 0.00 0.00 39.69 2.57
3739 5512 4.101114 ACCATACCATACACTCCTCAACA 58.899 43.478 0.00 0.00 0.00 3.33
3753 5526 0.774276 TCAGGCACCAAACCATACCA 59.226 50.000 0.00 0.00 0.00 3.25
3762 5535 0.334335 TGGGCATTATCAGGCACCAA 59.666 50.000 0.00 0.00 30.63 3.67
3773 5546 2.875296 ACTGCAGAAACTTGGGCATTA 58.125 42.857 23.35 0.00 35.45 1.90
3774 5547 1.708341 ACTGCAGAAACTTGGGCATT 58.292 45.000 23.35 0.00 35.45 3.56
3780 5553 8.268738 GCTTTTAACAATTACTGCAGAAACTTG 58.731 33.333 23.35 18.82 0.00 3.16
3792 5565 8.342725 TCCGTTCAAAAGCTTTTAACAATTAC 57.657 30.769 23.44 12.19 0.00 1.89
3797 5570 5.570234 ACTCCGTTCAAAAGCTTTTAACA 57.430 34.783 23.44 8.51 0.00 2.41
3813 5586 3.713826 AACAATGGTATGGAACTCCGT 57.286 42.857 0.00 0.00 39.43 4.69
3849 5622 7.124573 ACAAAGGCAAATTAAGAGAAAGGTT 57.875 32.000 0.00 0.00 0.00 3.50
3862 6316 8.133024 TGGAAAGTTATGATACAAAGGCAAAT 57.867 30.769 0.00 0.00 0.00 2.32
3875 6329 6.951198 TGCCTTTAAGGAATGGAAAGTTATGA 59.049 34.615 16.18 0.00 37.67 2.15
3926 6383 9.481340 AGAAAAGAAAAGTGATGCCTTATTTTC 57.519 29.630 5.72 5.72 39.18 2.29
3934 6391 4.279420 ACTCCAGAAAAGAAAAGTGATGCC 59.721 41.667 0.00 0.00 0.00 4.40
3937 6394 8.924511 TGATTACTCCAGAAAAGAAAAGTGAT 57.075 30.769 0.00 0.00 0.00 3.06
3938 6395 8.924511 ATGATTACTCCAGAAAAGAAAAGTGA 57.075 30.769 0.00 0.00 0.00 3.41
3990 6862 3.511540 ACATGACGAGAAACCTCATCTCA 59.488 43.478 0.00 0.00 42.79 3.27
4003 6875 4.266265 GTGACACATATCACACATGACGAG 59.734 45.833 0.00 0.00 46.89 4.18
4028 6900 6.574832 GCATATGATACACACGCTAACAAATG 59.425 38.462 6.97 0.00 0.00 2.32
4031 6903 4.509970 GGCATATGATACACACGCTAACAA 59.490 41.667 6.97 0.00 0.00 2.83
4046 6918 2.815503 CAAGGCGAATGATGGCATATGA 59.184 45.455 6.97 0.00 33.44 2.15
4047 6919 2.815503 TCAAGGCGAATGATGGCATATG 59.184 45.455 0.00 0.00 33.44 1.78
4048 6920 3.144657 TCAAGGCGAATGATGGCATAT 57.855 42.857 0.00 0.00 33.44 1.78
4049 6921 2.636647 TCAAGGCGAATGATGGCATA 57.363 45.000 0.00 0.00 33.44 3.14
4060 6934 3.054728 TGGTTCTATCCAAATCAAGGCGA 60.055 43.478 0.00 0.00 34.24 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.