AutoCloner

Multiple sequence alignment - TraesCS7A01G181200

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G181200	chr7A	100.000	8408	0	0	1	8408	135905232	135913639	0.000000e+00	15527.0
1	TraesCS7A01G181200	chr7A	87.500	688	79	7	7726	8408	219862220	219861535	0.000000e+00	787.0
2	TraesCS7A01G181200	chr7A	80.250	400	45	28	5537	5915	156871067	156871453	3.870000e-68	270.0
3	TraesCS7A01G181200	chr7A	74.167	600	128	8	2406	2989	694020115	694020703	3.050000e-54	224.0
4	TraesCS7A01G181200	chr7A	75.824	364	63	15	4232	4584	730840205	730840554	2.430000e-35	161.0
5	TraesCS7A01G181200	chr7A	72.680	582	114	31	546	1114	6622543	6621994	1.460000e-32	152.0
6	TraesCS7A01G181200	chr7A	92.453	106	8	0	1721	1826	135906847	135906952	1.460000e-32	152.0
7	TraesCS7A01G181200	chr7A	92.453	106	8	0	1616	1721	135906952	135907057	1.460000e-32	152.0
8	TraesCS7A01G181200	chr7D	89.894	2741	215	24	428	3140	136264236	136266942	0.000000e+00	3470.0
9	TraesCS7A01G181200	chr7D	89.903	2278	161	33	5242	7478	136387395	136389644	0.000000e+00	2868.0
10	TraesCS7A01G181200	chr7D	88.359	2285	154	55	5242	7492	136268367	136270573	0.000000e+00	2643.0
11	TraesCS7A01G181200	chr7D	89.230	1337	86	23	3487	4785	136266939	136268255	0.000000e+00	1618.0
12	TraesCS7A01G181200	chr7D	85.984	1006	80	20	6756	7717	136295407	136296395	0.000000e+00	1020.0
13	TraesCS7A01G181200	chr7D	86.695	699	75	8	7724	8408	635707276	635707970	0.000000e+00	760.0
14	TraesCS7A01G181200	chr7D	86.688	631	67	7	7792	8408	636304548	636303921	0.000000e+00	684.0
15	TraesCS7A01G181200	chr7D	87.918	538	48	14	4221	4755	136386765	136387288	1.200000e-172	617.0
16	TraesCS7A01G181200	chr7D	86.712	444	41	8	3	435	136263476	136263912	2.120000e-130	477.0
17	TraesCS7A01G181200	chr7D	85.422	391	29	17	3832	4222	136384661	136385023	1.710000e-101	381.0
18	TraesCS7A01G181200	chr7D	76.976	721	82	43	6685	7360	136395714	136396395	1.350000e-87	335.0
19	TraesCS7A01G181200	chr7D	75.709	494	81	32	5474	5945	499970255	499969779	2.380000e-50	211.0
20	TraesCS7A01G181200	chr7D	93.103	116	5	3	5082	5196	136268253	136268366	5.220000e-37	167.0
21	TraesCS7A01G181200	chr7D	75.723	346	70	12	4174	4513	1070104	1070441	2.430000e-35	161.0
22	TraesCS7A01G181200	chr7D	85.207	169	8	8	7472	7636	136391118	136391273	3.140000e-34	158.0
23	TraesCS7A01G181200	chr7D	93.939	99	4	2	5093	5190	136387291	136387388	1.890000e-31	148.0
24	TraesCS7A01G181200	chr7D	91.509	106	9	0	1721	1826	136265436	136265541	6.800000e-31	147.0
25	TraesCS7A01G181200	chr7D	83.962	106	8	2	1616	1721	136265541	136265637	8.990000e-15	93.5
26	TraesCS7A01G181200	chr7D	92.188	64	4	1	7654	7717	136392668	136392730	1.160000e-13	89.8
27	TraesCS7A01G181200	chr7B	88.186	2277	210	35	279	2528	99134834	99137078	0.000000e+00	2660.0
28	TraesCS7A01G181200	chr7B	86.949	2176	230	31	1	2143	100006060	100003906	0.000000e+00	2396.0
29	TraesCS7A01G181200	chr7B	85.308	1055	90	28	6624	7636	99214733	99215764	0.000000e+00	1029.0
30	TraesCS7A01G181200	chr7B	85.368	991	112	17	2155	3135	100003848	100002881	0.000000e+00	996.0
31	TraesCS7A01G181200	chr7B	83.796	901	70	35	6625	7492	99994691	99993834	0.000000e+00	785.0
32	TraesCS7A01G181200	chr7B	79.743	1091	133	58	5220	6268	99198081	99199125	0.000000e+00	710.0
33	TraesCS7A01G181200	chr7B	89.484	504	38	5	7221	7714	99877836	99877338	2.580000e-174	623.0
34	TraesCS7A01G181200	chr7B	90.066	302	28	1	4783	5084	524932624	524932325	2.850000e-104	390.0
35	TraesCS7A01G181200	chr7B	76.285	856	116	43	6710	7521	99486150	99486962	7.970000e-100	375.0
36	TraesCS7A01G181200	chr7B	89.157	249	16	2	3	240	99134579	99134827	4.930000e-77	300.0
37	TraesCS7A01G181200	chr7B	77.624	505	59	32	6710	7194	99286132	99286602	3.010000e-64	257.0
38	TraesCS7A01G181200	chr7B	78.717	343	66	6	4020	4356	723287642	723287301	1.100000e-53	222.0
39	TraesCS7A01G181200	chr7B	81.625	283	25	8	3	270	615889883	615889613	8.550000e-50	209.0
40	TraesCS7A01G181200	chr7B	73.633	512	109	9	2413	2909	727546540	727546040	3.120000e-39	174.0
41	TraesCS7A01G181200	chr7B	90.566	106	10	0	1721	1826	99136174	99136279	3.160000e-29	141.0
42	TraesCS7A01G181200	chr7B	82.738	168	18	7	6466	6624	99995085	99994920	1.140000e-28	139.0
43	TraesCS7A01G181200	chr7B	88.679	106	12	0	1721	1826	100004428	100004323	6.850000e-26	130.0
44	TraesCS7A01G181200	chr7B	81.651	109	16	2	6571	6678	99894601	99894496	4.180000e-13	87.9
45	TraesCS7A01G181200	chr7B	80.870	115	13	8	5089	5199	744730777	744730668	1.950000e-11	82.4
46	TraesCS7A01G181200	chr2A	95.369	691	29	2	7721	8408	207644117	207644807	0.000000e+00	1096.0
47	TraesCS7A01G181200	chr2A	72.448	1009	224	40	536	1520	769519845	769520823	2.990000e-69	274.0
48	TraesCS7A01G181200	chr2A	79.152	283	41	8	3	268	160030658	160030377	6.710000e-41	180.0
49	TraesCS7A01G181200	chr2A	84.043	94	12	1	3446	3539	522721	522811	4.180000e-13	87.9
50	TraesCS7A01G181200	chr2A	79.208	101	17	3	1447	1547	455450450	455450546	5.450000e-07	67.6
51	TraesCS7A01G181200	chr2A	94.444	36	1	1	369	404	768213040	768213074	4.000000e-03	54.7
52	TraesCS7A01G181200	chr3B	86.950	705	72	11	7721	8408	756256673	756257374	0.000000e+00	774.0
53	TraesCS7A01G181200	chr3B	90.728	302	26	1	4783	5084	51217586	51217885	1.310000e-107	401.0
54	TraesCS7A01G181200	chr3B	83.058	242	34	7	4043	4281	273246831	273247068	6.610000e-51	213.0
55	TraesCS7A01G181200	chr3B	75.349	430	88	14	4168	4584	773538265	773538689	3.100000e-44	191.0
56	TraesCS7A01G181200	chr3B	81.132	106	17	3	516	620	19413254	19413151	1.950000e-11	82.4
57	TraesCS7A01G181200	chr3B	82.432	74	11	2	523	595	340795662	340795590	7.050000e-06	63.9
58	TraesCS7A01G181200	chrUn	86.544	706	73	15	7721	8408	15765552	15766253	0.000000e+00	758.0
59	TraesCS7A01G181200	chrUn	74.560	511	75	39	5211	5696	349247947	349247467	1.120000e-38	172.0
60	TraesCS7A01G181200	chrUn	89.362	94	8	2	11	104	103232719	103232810	5.330000e-22	117.0
61	TraesCS7A01G181200	chr6B	86.222	704	78	10	7721	8408	51760757	51761457	0.000000e+00	745.0
62	TraesCS7A01G181200	chr6B	91.946	298	22	1	4785	5082	708992200	708991905	4.690000e-112	416.0
63	TraesCS7A01G181200	chr6B	78.887	521	88	16	4020	4528	102203022	102202512	4.860000e-87	333.0
64	TraesCS7A01G181200	chr6B	72.831	611	136	21	899	1501	444751139	444750551	1.860000e-41	182.0
65	TraesCS7A01G181200	chr6B	80.000	125	18	7	5082	5202	29458321	29458442	1.500000e-12	86.1
66	TraesCS7A01G181200	chr5B	86.040	702	80	10	7721	8408	666318512	666319209	0.000000e+00	737.0
67	TraesCS7A01G181200	chr5B	78.325	406	74	11	4190	4584	548988459	548988057	5.040000e-62	250.0
68	TraesCS7A01G181200	chr5B	84.861	251	25	2	7721	7958	458014486	458014736	3.030000e-59	241.0
69	TraesCS7A01G181200	chr5B	90.000	150	13	1	7721	7868	458029958	458030107	8.610000e-45	193.0
70	TraesCS7A01G181200	chr5B	77.011	348	64	10	4248	4584	477286659	477286317	1.440000e-42	185.0
71	TraesCS7A01G181200	chr5B	79.060	234	46	3	1307	1538	308979434	308979666	3.140000e-34	158.0
72	TraesCS7A01G181200	chr5B	80.808	198	36	2	1291	1487	9283948	9284144	4.060000e-33	154.0
73	TraesCS7A01G181200	chr5B	79.476	229	28	10	72	284	678129947	678130172	2.450000e-30	145.0
74	TraesCS7A01G181200	chr5B	75.637	353	50	25	5202	5524	417664010	417663664	8.800000e-30	143.0
75	TraesCS7A01G181200	chr5B	75.380	329	64	12	5209	5523	538597718	538597393	8.800000e-30	143.0
76	TraesCS7A01G181200	chr5B	85.915	71	10	0	535	605	665767417	665767347	9.050000e-10	76.8
77	TraesCS7A01G181200	chr2B	87.776	589	59	9	7830	8408	639493825	639493240	0.000000e+00	676.0
78	TraesCS7A01G181200	chr2B	81.498	681	99	15	7721	8385	44306921	44307590	1.240000e-147	534.0
79	TraesCS7A01G181200	chr2B	73.449	403	87	10	2567	2967	658938530	658938914	5.290000e-27	134.0
80	TraesCS7A01G181200	chr2B	78.613	173	35	2	931	1102	371748	371919	6.900000e-21	113.0
81	TraesCS7A01G181200	chr2B	94.595	37	2	0	369	405	793533114	793533078	3.280000e-04	58.4
82	TraesCS7A01G181200	chr5A	81.277	689	101	14	7721	8386	692777882	692778565	4.470000e-147	532.0
83	TraesCS7A01G181200	chr5A	77.840	537	100	13	4041	4564	708676121	708675591	1.760000e-81	315.0
84	TraesCS7A01G181200	chr5A	95.294	170	8	0	4785	4954	649634113	649633944	3.870000e-68	270.0
85	TraesCS7A01G181200	chr5A	76.660	467	76	25	5214	5657	76200255	76200711	2.360000e-55	228.0
86	TraesCS7A01G181200	chr5A	92.593	135	8	2	3	135	667116467	667116601	8.610000e-45	193.0
87	TraesCS7A01G181200	chr5A	80.216	278	32	11	3	259	131787493	131787218	4.010000e-43	187.0
88	TraesCS7A01G181200	chr5A	75.281	445	81	18	4178	4615	10719782	10720204	1.440000e-42	185.0
89	TraesCS7A01G181200	chr5A	91.339	127	6	2	4959	5082	649633777	649633653	1.450000e-37	169.0
90	TraesCS7A01G181200	chr5A	80.000	145	22	5	3450	3593	586199454	586199592	5.370000e-17	100.0
91	TraesCS7A01G181200	chr5A	77.095	179	30	7	5209	5384	454679858	454679688	8.990000e-15	93.5
92	TraesCS7A01G181200	chr3A	76.541	925	194	16	599	1520	166055874	166054970	1.270000e-132	484.0
93	TraesCS7A01G181200	chr3A	78.918	536	95	13	4039	4563	524327688	524327160	1.740000e-91	348.0
94	TraesCS7A01G181200	chr3A	74.497	596	123	14	2405	2986	130587294	130587874	1.830000e-56	231.0
95	TraesCS7A01G181200	chr3A	74.050	605	124	18	2413	2998	561065204	561065794	5.110000e-52	217.0
96	TraesCS7A01G181200	chr3A	83.616	177	16	6	3	167	53557222	53557397	4.060000e-33	154.0
97	TraesCS7A01G181200	chr1B	79.601	451	65	25	5482	5919	345495791	345496227	1.770000e-76	298.0
98	TraesCS7A01G181200	chr1B	73.958	768	155	28	492	1228	534234765	534234012	1.390000e-67	268.0
99	TraesCS7A01G181200	chr5D	75.845	592	112	11	2405	2976	348499453	348500033	1.080000e-68	272.0
100	TraesCS7A01G181200	chr5D	78.484	409	72	12	4188	4584	344528398	344528802	3.900000e-63	254.0
101	TraesCS7A01G181200	chr5D	73.128	748	123	48	5198	5914	80193502	80192802	6.660000e-46	196.0
102	TraesCS7A01G181200	chr5D	80.435	276	34	8	27	287	520907716	520907986	8.610000e-45	193.0
103	TraesCS7A01G181200	chr5D	74.388	531	94	23	2446	2959	536383149	536382644	1.110000e-43	189.0
104	TraesCS7A01G181200	chr5D	75.604	414	75	18	4177	4584	339336	339729	1.860000e-41	182.0
105	TraesCS7A01G181200	chr5D	85.635	181	14	5	3	171	232835761	232835941	6.710000e-41	180.0
106	TraesCS7A01G181200	chr5D	81.752	137	25	0	899	1035	470056288	470056152	1.920000e-21	115.0
107	TraesCS7A01G181200	chr5D	80.952	147	20	6	3448	3593	465867760	465867899	8.920000e-20	110.0
108	TraesCS7A01G181200	chr5D	85.714	105	8	4	5210	5307	497167463	497167567	4.150000e-18	104.0
109	TraesCS7A01G181200	chr5D	74.342	304	47	20	3546	3829	219473091	219472799	5.370000e-17	100.0
110	TraesCS7A01G181200	chr2D	75.521	576	119	10	2414	2989	580567070	580567623	6.470000e-66	263.0
111	TraesCS7A01G181200	chr2D	82.836	268	26	13	3	252	622248056	622248321	1.100000e-53	222.0
112	TraesCS7A01G181200	chr2D	80.074	271	38	15	5493	5753	562229076	562229340	4.010000e-43	187.0
113	TraesCS7A01G181200	chr2D	80.114	176	34	1	535	710	70491649	70491475	6.850000e-26	130.0
114	TraesCS7A01G181200	chr2D	77.470	253	31	16	5285	5522	527640066	527639825	2.460000e-25	128.0
115	TraesCS7A01G181200	chr2D	79.412	170	19	13	5752	5915	189667838	189667679	1.150000e-18	106.0
116	TraesCS7A01G181200	chr2D	78.667	150	32	0	1287	1436	570100051	570099902	5.370000e-17	100.0
117	TraesCS7A01G181200	chr2D	84.000	75	11	1	1447	1521	552968348	552968421	4.210000e-08	71.3
118	TraesCS7A01G181200	chr2D	94.444	36	2	0	369	404	643314392	643314427	1.000000e-03	56.5
119	TraesCS7A01G181200	chr1D	74.316	658	123	28	693	1329	398943470	398942838	3.920000e-58	237.0
120	TraesCS7A01G181200	chr1D	82.667	75	13	0	532	606	12361430	12361504	5.450000e-07	67.6
121	TraesCS7A01G181200	chr1D	94.872	39	1	1	429	466	426865550	426865512	9.110000e-05	60.2
122	TraesCS7A01G181200	chr3D	80.769	338	30	22	5209	5522	39437813	39438139	1.830000e-56	231.0
123	TraesCS7A01G181200	chr3D	82.510	263	44	2	4020	4281	189045854	189046115	6.560000e-56	230.0
124	TraesCS7A01G181200	chr3D	74.877	406	84	15	4174	4564	566603126	566603528	1.450000e-37	169.0
125	TraesCS7A01G181200	chr3D	79.832	119	23	1	136	253	328376420	328376302	1.500000e-12	86.1
126	TraesCS7A01G181200	chr3D	85.246	61	9	0	1449	1509	45956504	45956444	7.050000e-06	63.9
127	TraesCS7A01G181200	chr6A	76.596	423	65	28	5476	5878	513361710	513361302	1.430000e-47	202.0
128	TraesCS7A01G181200	chr6A	77.273	154	28	5	430	578	478291145	478291296	5.410000e-12	84.2
129	TraesCS7A01G181200	chr4B	77.480	373	54	25	5531	5881	123838373	123838737	6.660000e-46	196.0
130	TraesCS7A01G181200	chr1A	74.755	511	74	39	5211	5696	561738166	561737686	2.410000e-40	178.0
131	TraesCS7A01G181200	chr1A	81.034	174	29	3	2405	2578	24582017	24582186	1.470000e-27	135.0
132	TraesCS7A01G181200	chr4D	84.571	175	26	1	7719	7893	485617248	485617075	1.120000e-38	172.0
133	TraesCS7A01G181200	chr4D	74.866	187	34	8	429	612	4804564	4804740	1.170000e-08	73.1
134	TraesCS7A01G181200	chr6D	77.011	261	37	15	3445	3703	43502192	43502431	2.460000e-25	128.0
135	TraesCS7A01G181200	chr6D	77.011	261	33	18	5287	5522	147690236	147689978	3.190000e-24	124.0
136	TraesCS7A01G181200	chr4A	79.874	159	27	5	1287	1443	100663310	100663155	2.480000e-20	111.0
137	TraesCS7A01G181200	chr4A	76.974	152	25	5	432	581	122039683	122039540	2.520000e-10	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G181200	chr7A	135905232	135913639	8407	False	15527.000000	15527	100.000000	1	8408	1	chr7A.!!$F1	8407
1	TraesCS7A01G181200	chr7A	219861535	219862220	685	True	787.000000	787	87.500000	7726	8408	1	chr7A.!!$R2	682
2	TraesCS7A01G181200	chr7A	694020115	694020703	588	False	224.000000	224	74.167000	2406	2989	1	chr7A.!!$F3	583
3	TraesCS7A01G181200	chr7D	136263476	136270573	7097	False	1230.785714	3470	88.967000	3	7492	7	chr7D.!!$F4	7489
4	TraesCS7A01G181200	chr7D	136295407	136296395	988	False	1020.000000	1020	85.984000	6756	7717	1	chr7D.!!$F2	961
5	TraesCS7A01G181200	chr7D	635707276	635707970	694	False	760.000000	760	86.695000	7724	8408	1	chr7D.!!$F3	684
6	TraesCS7A01G181200	chr7D	636303921	636304548	627	True	684.000000	684	86.688000	7792	8408	1	chr7D.!!$R2	616
7	TraesCS7A01G181200	chr7D	136384661	136396395	11734	False	656.685714	2868	87.364714	3832	7717	7	chr7D.!!$F5	3885
8	TraesCS7A01G181200	chr7B	100002881	100006060	3179	True	1174.000000	2396	86.998667	1	3135	3	chr7B.!!$R9	3134
9	TraesCS7A01G181200	chr7B	99134579	99137078	2499	False	1033.666667	2660	89.303000	3	2528	3	chr7B.!!$F5	2525
10	TraesCS7A01G181200	chr7B	99214733	99215764	1031	False	1029.000000	1029	85.308000	6624	7636	1	chr7B.!!$F2	1012
11	TraesCS7A01G181200	chr7B	99198081	99199125	1044	False	710.000000	710	79.743000	5220	6268	1	chr7B.!!$F1	1048
12	TraesCS7A01G181200	chr7B	99993834	99995085	1251	True	462.000000	785	83.267000	6466	7492	2	chr7B.!!$R8	1026
13	TraesCS7A01G181200	chr7B	99486150	99486962	812	False	375.000000	375	76.285000	6710	7521	1	chr7B.!!$F4	811
14	TraesCS7A01G181200	chr2A	207644117	207644807	690	False	1096.000000	1096	95.369000	7721	8408	1	chr2A.!!$F2	687
15	TraesCS7A01G181200	chr2A	769519845	769520823	978	False	274.000000	274	72.448000	536	1520	1	chr2A.!!$F5	984
16	TraesCS7A01G181200	chr3B	756256673	756257374	701	False	774.000000	774	86.950000	7721	8408	1	chr3B.!!$F3	687
17	TraesCS7A01G181200	chrUn	15765552	15766253	701	False	758.000000	758	86.544000	7721	8408	1	chrUn.!!$F1	687
18	TraesCS7A01G181200	chr6B	51760757	51761457	700	False	745.000000	745	86.222000	7721	8408	1	chr6B.!!$F2	687
19	TraesCS7A01G181200	chr6B	102202512	102203022	510	True	333.000000	333	78.887000	4020	4528	1	chr6B.!!$R1	508
20	TraesCS7A01G181200	chr5B	666318512	666319209	697	False	737.000000	737	86.040000	7721	8408	1	chr5B.!!$F5	687
21	TraesCS7A01G181200	chr2B	639493240	639493825	585	True	676.000000	676	87.776000	7830	8408	1	chr2B.!!$R1	578
22	TraesCS7A01G181200	chr2B	44306921	44307590	669	False	534.000000	534	81.498000	7721	8385	1	chr2B.!!$F2	664
23	TraesCS7A01G181200	chr5A	692777882	692778565	683	False	532.000000	532	81.277000	7721	8386	1	chr5A.!!$F5	665
24	TraesCS7A01G181200	chr5A	708675591	708676121	530	True	315.000000	315	77.840000	4041	4564	1	chr5A.!!$R3	523
25	TraesCS7A01G181200	chr3A	166054970	166055874	904	True	484.000000	484	76.541000	599	1520	1	chr3A.!!$R1	921
26	TraesCS7A01G181200	chr3A	524327160	524327688	528	True	348.000000	348	78.918000	4039	4563	1	chr3A.!!$R2	524
27	TraesCS7A01G181200	chr3A	130587294	130587874	580	False	231.000000	231	74.497000	2405	2986	1	chr3A.!!$F2	581
28	TraesCS7A01G181200	chr3A	561065204	561065794	590	False	217.000000	217	74.050000	2413	2998	1	chr3A.!!$F3	585
29	TraesCS7A01G181200	chr1B	534234012	534234765	753	True	268.000000	268	73.958000	492	1228	1	chr1B.!!$R1	736
30	TraesCS7A01G181200	chr5D	348499453	348500033	580	False	272.000000	272	75.845000	2405	2976	1	chr5D.!!$F4	571
31	TraesCS7A01G181200	chr2D	580567070	580567623	553	False	263.000000	263	75.521000	2414	2989	1	chr2D.!!$F3	575
32	TraesCS7A01G181200	chr1D	398942838	398943470	632	True	237.000000	237	74.316000	693	1329	1	chr1D.!!$R1	636

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
277	319	0.606944	TCGCGTGCCCCTTTGTAAAT	60.607	50.0	5.77	0.00	0.00	1.40	F
1321	1759	0.389817	CAGGGCATTGAAGACGACGA	60.390	55.0	0.00	0.00	0.00	4.20	F
2426	2934	0.109723	TTGACGGCTAGGGCAAACTT	59.890	50.0	0.00	0.00	40.87	2.66	F
3281	3814	0.033894	TTATGGAAAGGCCGAACCCC	60.034	55.0	0.00	0.00	40.58	4.95	F
4956	7291	0.034896	AAATCGTGTTCCTGAGCCGT	59.965	50.0	0.00	0.00	0.00	5.68	F
5068	7403	0.179056	GCCTGGATAAGCGCTTACCA	60.179	55.0	31.44	31.44	0.00	3.25	F
6359	8758	0.248289	GGGCTGGCTCGTTACTGTAA	59.752	55.0	0.00	0.00	0.00	2.41	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1373	1811	0.107017	AAGTATTGCTCCAGCCGCAT	60.107	50.0	0.00	0.00	41.18	4.73	R
3262	3795	0.033894	GGGGTTCGGCCTTTCCATAA	60.034	55.0	0.00	0.00	37.43	1.90	R
4076	4645	0.320421	GTGCGAGACTAGGCCAAACA	60.320	55.0	5.01	0.00	0.00	2.83	R
5042	7377	0.032130	CGCTTATCCAGGCGCTTAGA	59.968	55.0	7.64	0.00	44.64	2.10	R
6333	8732	0.037590	AACGAGCCAGCCCATTACAA	59.962	50.0	0.00	0.00	0.00	2.41	R
6366	8765	0.539051	CGTGGAAGGATCTCTGGCTT	59.461	55.0	0.00	0.00	0.00	4.35	R
7961	14141	0.021610	CGTCACTTACTTAACGCGCG	59.978	55.0	30.96	30.96	0.00	6.86	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
223	237	2.906182	ATCGCGAGGCAAATCGAGCA	62.906	55.000	16.66	0.00	45.56	4.26
245	287	4.666253	GCAGGGCTTGGCAGGTGA	62.666	66.667	0.00	0.00	0.00	4.02
246	288	2.360852	CAGGGCTTGGCAGGTGAG	60.361	66.667	0.00	0.00	0.00	3.51
247	289	2.856000	AGGGCTTGGCAGGTGAGT	60.856	61.111	0.00	0.00	0.00	3.41
275	317	1.669760	CTCGCGTGCCCCTTTGTAA	60.670	57.895	5.77	0.00	0.00	2.41
276	318	1.227883	TCGCGTGCCCCTTTGTAAA	60.228	52.632	5.77	0.00	0.00	2.01
277	319	0.606944	TCGCGTGCCCCTTTGTAAAT	60.607	50.000	5.77	0.00	0.00	1.40
305	347	5.238650	CCGATGTGACTTTCCTTTGTAAACT	59.761	40.000	0.00	0.00	0.00	2.66
328	370	8.480133	ACTAGGGTTGATAAGGTCATAGTAAG	57.520	38.462	0.00	0.00	36.54	2.34
397	439	4.580580	CCTCTGCCCCAAATTATAAGACAC	59.419	45.833	0.00	0.00	0.00	3.67
466	839	0.951040	GGTGCCTCAAACCTGTCTCG	60.951	60.000	0.00	0.00	34.66	4.04
470	843	1.540363	GCCTCAAACCTGTCTCGAACA	60.540	52.381	0.00	0.00	36.18	3.18
478	851	0.673985	CTGTCTCGAACACCTGGACA	59.326	55.000	0.00	2.04	35.90	4.02
493	866	3.319926	GACAGACGGACGGACGGAC	62.320	68.421	6.00	0.32	38.39	4.79
494	867	4.112341	CAGACGGACGGACGGACC	62.112	72.222	6.00	0.00	38.39	4.46
533	923	2.943978	CGGGAGTCTCAAACCGGCT	61.944	63.158	0.00	0.00	42.48	5.52
578	968	5.009010	GCACCCCTCATATACAACTCAAATG	59.991	44.000	0.00	0.00	0.00	2.32
581	971	7.773224	CACCCCTCATATACAACTCAAATGTAA	59.227	37.037	0.00	0.00	36.88	2.41
678	1087	2.501610	GTCCACATCCGCTCCCTC	59.498	66.667	0.00	0.00	0.00	4.30
705	1114	1.306141	CCTAGCCACTCCACTCCCA	60.306	63.158	0.00	0.00	0.00	4.37
710	1119	1.307343	CCACTCCACTCCCATCCCT	60.307	63.158	0.00	0.00	0.00	4.20
776	1200	1.858091	CGCAGCGGATCATAGTTCTT	58.142	50.000	7.00	0.00	0.00	2.52
789	1213	0.888619	AGTTCTTCGTCAGCCGATCA	59.111	50.000	0.00	0.00	46.75	2.92
790	1214	0.992802	GTTCTTCGTCAGCCGATCAC	59.007	55.000	0.00	0.00	46.75	3.06
818	1242	1.688627	GGACCTCATCCTAGTCGGGTT	60.689	57.143	0.00	0.00	45.22	4.11
879	1303	1.539065	CGCGAGGAGAATGCCTTACAT	60.539	52.381	0.00	0.00	42.30	2.29
890	1314	5.132648	AGAATGCCTTACATGGGTCAGAATA	59.867	40.000	0.00	0.00	39.60	1.75
1075	1505	1.276622	GTCCACTGAGGGTATGGTGT	58.723	55.000	0.00	0.00	38.24	4.16
1084	1514	3.882131	GGTATGGTGTGACATGCCT	57.118	52.632	6.13	0.00	46.30	4.75
1230	1667	2.763215	GACATGTTGGCCTCCCCA	59.237	61.111	3.32	0.00	43.51	4.96
1258	1695	5.000591	AGACAGATACATCGTCGATCTCAT	58.999	41.667	4.34	0.00	36.32	2.90
1321	1759	0.389817	CAGGGCATTGAAGACGACGA	60.390	55.000	0.00	0.00	0.00	4.20
1368	1806	3.442625	CGTGTCCCATGTCTTACTCTACA	59.557	47.826	0.00	0.00	0.00	2.74
1373	1811	5.127194	GTCCCATGTCTTACTCTACATCACA	59.873	44.000	0.00	0.00	34.12	3.58
1374	1812	5.899547	TCCCATGTCTTACTCTACATCACAT	59.100	40.000	0.00	0.00	34.12	3.21
1482	1920	7.751348	GGTTTTACGTTGCATGTAATTGTATGA	59.249	33.333	11.49	0.00	30.49	2.15
1525	1963	4.821805	AGGTATCCGCTTGTGGAATTATTG	59.178	41.667	7.02	0.00	42.46	1.90
1540	1978	6.778069	TGGAATTATTGTTTTAGGTGTGACCA	59.222	34.615	0.00	0.00	41.95	4.02
1557	1995	4.522114	TGACCAATCACTGTTCTCACAAA	58.478	39.130	0.00	0.00	30.36	2.83
1559	1997	3.885297	ACCAATCACTGTTCTCACAAAGG	59.115	43.478	0.00	0.00	30.36	3.11
1561	1999	4.339247	CCAATCACTGTTCTCACAAAGGTT	59.661	41.667	0.00	0.00	30.36	3.50
1562	2000	5.530915	CCAATCACTGTTCTCACAAAGGTTA	59.469	40.000	0.00	0.00	30.36	2.85
1563	2001	6.207417	CCAATCACTGTTCTCACAAAGGTTAT	59.793	38.462	0.00	0.00	30.36	1.89
1564	2002	7.255590	CCAATCACTGTTCTCACAAAGGTTATT	60.256	37.037	0.00	0.00	30.36	1.40
1565	2003	8.783093	CAATCACTGTTCTCACAAAGGTTATTA	58.217	33.333	0.00	0.00	30.36	0.98
1566	2004	7.962964	TCACTGTTCTCACAAAGGTTATTAG	57.037	36.000	0.00	0.00	30.36	1.73
1570	2008	9.220767	ACTGTTCTCACAAAGGTTATTAGATTC	57.779	33.333	0.00	0.00	30.36	2.52
1812	2250	0.463833	GAATGCCACTAGGAACGGGG	60.464	60.000	0.00	0.00	36.89	5.73
1817	2255	1.221021	CACTAGGAACGGGGGAAGC	59.779	63.158	0.00	0.00	0.00	3.86
1909	2347	0.949105	GAGCACACCAACCGAACGAT	60.949	55.000	0.00	0.00	0.00	3.73
1960	2409	4.225267	ACCCATGTCTAGTTCTAAACCAGG	59.775	45.833	0.00	0.00	0.00	4.45
2032	2493	7.257722	CCGAATCTAAAAATAGGCATTTGTGT	58.742	34.615	0.00	0.00	34.53	3.72
2036	2497	7.517614	TCTAAAAATAGGCATTTGTGTCACA	57.482	32.000	0.18	0.18	34.53	3.58
2106	2567	1.208614	GCAAAGTCGCAGAAGGCTG	59.791	57.895	0.00	0.00	45.13	4.85
2122	2583	1.406887	GGCTGCGAATGAAGGTAAGGA	60.407	52.381	0.00	0.00	0.00	3.36
2192	2699	5.892119	AGTTCAGATTCCAGATTTGATGCAT	59.108	36.000	0.00	0.00	0.00	3.96
2201	2708	3.003378	CAGATTTGATGCATCATGTCGCT	59.997	43.478	29.13	18.18	36.56	4.93
2273	2780	2.159099	TGCTAAGGGTACGCTCAATCAG	60.159	50.000	13.46	6.93	0.00	2.90
2276	2783	0.824759	AGGGTACGCTCAATCAGACC	59.175	55.000	6.62	0.00	0.00	3.85
2402	2910	5.479716	TTCTTCAGGTGTTTTCTTTCGTC	57.520	39.130	0.00	0.00	0.00	4.20
2426	2934	0.109723	TTGACGGCTAGGGCAAACTT	59.890	50.000	0.00	0.00	40.87	2.66
2474	2982	2.812619	GGATTCGCCTCCCCTCTGG	61.813	68.421	0.00	0.00	0.00	3.86
2660	3185	3.062042	CAATGGAGTTTTGGCAAAGAGC	58.938	45.455	13.04	7.80	44.65	4.09
2738	3263	3.935203	ACGAGATTTGGTATCAGTTGCTG	59.065	43.478	0.00	0.00	0.00	4.41
2784	3312	3.241530	AACTGCGACTCCAGGGCA	61.242	61.111	0.00	0.00	37.16	5.36
2863	3391	0.324368	ACTCTGGTATGGGAGCGACA	60.324	55.000	0.00	0.00	33.29	4.35
2871	3399	2.280592	GGGAGCGACAACAACGGT	60.281	61.111	0.00	0.00	43.87	4.83
2911	3440	0.599558	CGGTGGTAGTGGTTCTTCGA	59.400	55.000	0.00	0.00	0.00	3.71
3093	3625	3.198417	TCATGGACTTCTGCTGCTTCATA	59.802	43.478	0.00	0.00	0.00	2.15
3094	3626	2.977914	TGGACTTCTGCTGCTTCATAC	58.022	47.619	0.00	0.00	0.00	2.39
3140	3673	1.486310	CTAGTGGCATCTACTTGGGCA	59.514	52.381	0.00	0.00	34.48	5.36
3141	3674	0.698238	AGTGGCATCTACTTGGGCAA	59.302	50.000	0.00	0.00	38.90	4.52
3142	3675	0.811281	GTGGCATCTACTTGGGCAAC	59.189	55.000	0.00	0.00	38.90	4.17
3143	3676	0.403655	TGGCATCTACTTGGGCAACA	59.596	50.000	0.00	0.00	39.74	3.33
3144	3677	0.811281	GGCATCTACTTGGGCAACAC	59.189	55.000	0.00	0.00	39.74	3.32
3145	3678	1.533625	GCATCTACTTGGGCAACACA	58.466	50.000	0.00	0.00	39.74	3.72
3146	3679	1.470098	GCATCTACTTGGGCAACACAG	59.530	52.381	0.00	0.00	39.74	3.66
3147	3680	1.470098	CATCTACTTGGGCAACACAGC	59.530	52.381	0.00	0.00	39.74	4.40
3148	3681	0.472044	TCTACTTGGGCAACACAGCA	59.528	50.000	0.00	0.00	39.74	4.41
3149	3682	0.877071	CTACTTGGGCAACACAGCAG	59.123	55.000	0.00	0.00	39.74	4.24
3150	3683	0.182537	TACTTGGGCAACACAGCAGT	59.817	50.000	0.00	0.00	39.74	4.40
3151	3684	0.684153	ACTTGGGCAACACAGCAGTT	60.684	50.000	0.00	0.00	39.74	3.16
3152	3685	0.461135	CTTGGGCAACACAGCAGTTT	59.539	50.000	0.00	0.00	39.74	2.66
3153	3686	0.901124	TTGGGCAACACAGCAGTTTT	59.099	45.000	0.00	0.00	39.74	2.43
3154	3687	0.175302	TGGGCAACACAGCAGTTTTG	59.825	50.000	3.94	3.94	38.22	2.44
3155	3688	0.175531	GGGCAACACAGCAGTTTTGT	59.824	50.000	9.49	0.00	37.65	2.83
3156	3689	1.405391	GGGCAACACAGCAGTTTTGTT	60.405	47.619	9.49	0.00	37.65	2.83
3159	3692	2.736192	GCAACACAGCAGTTTTGTTGTT	59.264	40.909	15.28	0.00	45.03	2.83
3160	3693	3.423384	GCAACACAGCAGTTTTGTTGTTG	60.423	43.478	15.28	7.70	45.03	3.33
3161	3694	2.958213	ACACAGCAGTTTTGTTGTTGG	58.042	42.857	0.00	0.00	45.03	3.77
3162	3695	1.660104	CACAGCAGTTTTGTTGTTGGC	59.340	47.619	0.00	0.00	45.03	4.52
3163	3696	1.274728	ACAGCAGTTTTGTTGTTGGCA	59.725	42.857	0.00	0.00	45.03	4.92
3164	3697	2.289320	ACAGCAGTTTTGTTGTTGGCAA	60.289	40.909	0.00	0.00	45.03	4.52
3165	3698	2.740981	CAGCAGTTTTGTTGTTGGCAAA	59.259	40.909	0.00	0.00	36.22	3.68
3166	3699	3.374678	CAGCAGTTTTGTTGTTGGCAAAT	59.625	39.130	0.00	0.00	35.99	2.32
3167	3700	4.569966	CAGCAGTTTTGTTGTTGGCAAATA	59.430	37.500	0.00	0.00	35.99	1.40
3168	3701	5.236911	CAGCAGTTTTGTTGTTGGCAAATAT	59.763	36.000	0.00	0.00	35.99	1.28
3169	3702	5.466393	AGCAGTTTTGTTGTTGGCAAATATC	59.534	36.000	0.00	0.00	35.99	1.63
3170	3703	5.236047	GCAGTTTTGTTGTTGGCAAATATCA	59.764	36.000	0.00	0.00	35.99	2.15
3171	3704	6.238320	GCAGTTTTGTTGTTGGCAAATATCAA	60.238	34.615	0.00	0.00	35.99	2.57
3172	3705	7.678218	GCAGTTTTGTTGTTGGCAAATATCAAA	60.678	33.333	0.00	9.27	35.99	2.69
3173	3706	7.851963	CAGTTTTGTTGTTGGCAAATATCAAAG	59.148	33.333	0.00	0.00	35.99	2.77
3174	3707	7.768120	AGTTTTGTTGTTGGCAAATATCAAAGA	59.232	29.630	0.00	2.15	35.99	2.52
3175	3708	8.558700	GTTTTGTTGTTGGCAAATATCAAAGAT	58.441	29.630	0.00	0.00	35.99	2.40
3176	3709	9.770097	TTTTGTTGTTGGCAAATATCAAAGATA	57.230	25.926	0.00	0.00	35.99	1.98
3177	3710	9.941325	TTTGTTGTTGGCAAATATCAAAGATAT	57.059	25.926	0.00	0.00	36.22	1.63
3178	3711	9.941325	TTGTTGTTGGCAAATATCAAAGATATT	57.059	25.926	0.00	6.46	36.22	1.28
3179	3712	9.585099	TGTTGTTGGCAAATATCAAAGATATTC	57.415	29.630	0.00	2.60	36.22	1.75
3180	3713	9.034544	GTTGTTGGCAAATATCAAAGATATTCC	57.965	33.333	0.00	10.14	36.22	3.01
3181	3714	8.303780	TGTTGGCAAATATCAAAGATATTCCA	57.696	30.769	0.00	12.05	0.00	3.53
3182	3715	8.756927	TGTTGGCAAATATCAAAGATATTCCAA	58.243	29.630	18.98	18.98	31.26	3.53
3183	3716	9.768662	GTTGGCAAATATCAAAGATATTCCAAT	57.231	29.630	22.38	6.22	33.89	3.16
3206	3739	9.848172	CAATTTTGGTTTTTCAAAGTAGATTCG	57.152	29.630	0.00	0.00	37.82	3.34
3207	3740	7.458038	TTTTGGTTTTTCAAAGTAGATTCGC	57.542	32.000	0.00	0.00	37.82	4.70
3208	3741	5.116069	TGGTTTTTCAAAGTAGATTCGCC	57.884	39.130	0.00	0.00	0.00	5.54
3209	3742	4.580995	TGGTTTTTCAAAGTAGATTCGCCA	59.419	37.500	0.00	0.00	0.00	5.69
3210	3743	5.154222	GGTTTTTCAAAGTAGATTCGCCAG	58.846	41.667	0.00	0.00	0.00	4.85
3211	3744	4.419522	TTTTCAAAGTAGATTCGCCAGC	57.580	40.909	0.00	0.00	0.00	4.85
3212	3745	2.024176	TCAAAGTAGATTCGCCAGCC	57.976	50.000	0.00	0.00	0.00	4.85
3213	3746	1.017387	CAAAGTAGATTCGCCAGCCC	58.983	55.000	0.00	0.00	0.00	5.19
3214	3747	0.618458	AAAGTAGATTCGCCAGCCCA	59.382	50.000	0.00	0.00	0.00	5.36
3215	3748	0.179000	AAGTAGATTCGCCAGCCCAG	59.821	55.000	0.00	0.00	0.00	4.45
3216	3749	0.687757	AGTAGATTCGCCAGCCCAGA	60.688	55.000	0.00	0.00	0.00	3.86
3217	3750	0.394565	GTAGATTCGCCAGCCCAGAT	59.605	55.000	0.00	0.00	0.00	2.90
3218	3751	0.394192	TAGATTCGCCAGCCCAGATG	59.606	55.000	0.00	0.00	0.00	2.90
3219	3752	1.153086	GATTCGCCAGCCCAGATGT	60.153	57.895	0.00	0.00	0.00	3.06
3220	3753	1.153086	ATTCGCCAGCCCAGATGTC	60.153	57.895	0.00	0.00	0.00	3.06
3221	3754	1.913951	ATTCGCCAGCCCAGATGTCA	61.914	55.000	0.00	0.00	0.00	3.58
3222	3755	1.913951	TTCGCCAGCCCAGATGTCAT	61.914	55.000	0.00	0.00	0.00	3.06
3223	3756	1.452651	CGCCAGCCCAGATGTCATT	60.453	57.895	0.00	0.00	0.00	2.57
3224	3757	0.179048	CGCCAGCCCAGATGTCATTA	60.179	55.000	0.00	0.00	0.00	1.90
3225	3758	1.312815	GCCAGCCCAGATGTCATTAC	58.687	55.000	0.00	0.00	0.00	1.89
3226	3759	1.408683	GCCAGCCCAGATGTCATTACA	60.409	52.381	0.00	0.00	40.69	2.41
3227	3760	2.945440	GCCAGCCCAGATGTCATTACAA	60.945	50.000	0.00	0.00	39.58	2.41
3228	3761	3.355378	CCAGCCCAGATGTCATTACAAA	58.645	45.455	0.00	0.00	39.58	2.83
3229	3762	3.763360	CCAGCCCAGATGTCATTACAAAA	59.237	43.478	0.00	0.00	39.58	2.44
3230	3763	4.220382	CCAGCCCAGATGTCATTACAAAAA	59.780	41.667	0.00	0.00	39.58	1.94
3231	3764	5.163513	CAGCCCAGATGTCATTACAAAAAC	58.836	41.667	0.00	0.00	39.58	2.43
3232	3765	5.047802	CAGCCCAGATGTCATTACAAAAACT	60.048	40.000	0.00	0.00	39.58	2.66
3233	3766	6.150976	CAGCCCAGATGTCATTACAAAAACTA	59.849	38.462	0.00	0.00	39.58	2.24
3234	3767	6.719370	AGCCCAGATGTCATTACAAAAACTAA	59.281	34.615	0.00	0.00	39.58	2.24
3235	3768	7.397192	AGCCCAGATGTCATTACAAAAACTAAT	59.603	33.333	0.00	0.00	39.58	1.73
3236	3769	8.682710	GCCCAGATGTCATTACAAAAACTAATA	58.317	33.333	0.00	0.00	39.58	0.98
3258	3791	8.870075	AATAAATTTATCATCACCTAGAGCCC	57.130	34.615	11.08	0.00	0.00	5.19
3259	3792	5.912149	AATTTATCATCACCTAGAGCCCA	57.088	39.130	0.00	0.00	0.00	5.36
3260	3793	6.460103	AATTTATCATCACCTAGAGCCCAT	57.540	37.500	0.00	0.00	0.00	4.00
3261	3794	5.912149	TTTATCATCACCTAGAGCCCATT	57.088	39.130	0.00	0.00	0.00	3.16
3262	3795	5.912149	TTATCATCACCTAGAGCCCATTT	57.088	39.130	0.00	0.00	0.00	2.32
3263	3796	4.803329	ATCATCACCTAGAGCCCATTTT	57.197	40.909	0.00	0.00	0.00	1.82
3264	3797	5.912149	ATCATCACCTAGAGCCCATTTTA	57.088	39.130	0.00	0.00	0.00	1.52
3265	3798	5.912149	TCATCACCTAGAGCCCATTTTAT	57.088	39.130	0.00	0.00	0.00	1.40
3266	3799	5.624159	TCATCACCTAGAGCCCATTTTATG	58.376	41.667	0.00	0.00	0.00	1.90
3279	3812	3.780902	CATTTTATGGAAAGGCCGAACC	58.219	45.455	0.00	2.27	40.66	3.62
3280	3813	1.842052	TTTATGGAAAGGCCGAACCC	58.158	50.000	0.00	0.00	40.58	4.11
3281	3814	0.033894	TTATGGAAAGGCCGAACCCC	60.034	55.000	0.00	0.00	40.58	4.95
3282	3815	1.208844	TATGGAAAGGCCGAACCCCA	61.209	55.000	0.00	2.18	40.58	4.96
3283	3816	2.361230	GGAAAGGCCGAACCCCAG	60.361	66.667	0.00	0.00	40.58	4.45
3284	3817	2.754375	GAAAGGCCGAACCCCAGA	59.246	61.111	0.00	0.00	40.58	3.86
3285	3818	1.303282	GAAAGGCCGAACCCCAGAT	59.697	57.895	0.00	0.00	40.58	2.90
3286	3819	0.544697	GAAAGGCCGAACCCCAGATA	59.455	55.000	0.00	0.00	40.58	1.98
3287	3820	0.546598	AAAGGCCGAACCCCAGATAG	59.453	55.000	0.00	0.00	40.58	2.08
3288	3821	1.345715	AAGGCCGAACCCCAGATAGG	61.346	60.000	0.00	0.00	40.58	2.57
3299	3832	2.568623	CCAGATAGGGCCCATGTAAC	57.431	55.000	27.56	6.62	0.00	2.50
3300	3833	1.774254	CCAGATAGGGCCCATGTAACA	59.226	52.381	27.56	0.00	0.00	2.41
3301	3834	2.487265	CCAGATAGGGCCCATGTAACAC	60.487	54.545	27.56	6.09	0.00	3.32
3302	3835	1.774856	AGATAGGGCCCATGTAACACC	59.225	52.381	27.56	1.89	0.00	4.16
3303	3836	1.774856	GATAGGGCCCATGTAACACCT	59.225	52.381	27.56	0.25	0.00	4.00
3304	3837	1.676248	TAGGGCCCATGTAACACCTT	58.324	50.000	27.56	0.00	0.00	3.50
3305	3838	0.783850	AGGGCCCATGTAACACCTTT	59.216	50.000	27.56	0.00	0.00	3.11
3306	3839	1.182667	GGGCCCATGTAACACCTTTC	58.817	55.000	19.95	0.00	0.00	2.62
3307	3840	1.182667	GGCCCATGTAACACCTTTCC	58.817	55.000	0.00	0.00	0.00	3.13
3308	3841	1.272480	GGCCCATGTAACACCTTTCCT	60.272	52.381	0.00	0.00	0.00	3.36
3309	3842	2.025699	GGCCCATGTAACACCTTTCCTA	60.026	50.000	0.00	0.00	0.00	2.94
3310	3843	3.562609	GGCCCATGTAACACCTTTCCTAA	60.563	47.826	0.00	0.00	0.00	2.69
3311	3844	4.083565	GCCCATGTAACACCTTTCCTAAA	58.916	43.478	0.00	0.00	0.00	1.85
3312	3845	4.525100	GCCCATGTAACACCTTTCCTAAAA	59.475	41.667	0.00	0.00	0.00	1.52
3313	3846	5.336451	GCCCATGTAACACCTTTCCTAAAAG	60.336	44.000	0.00	0.00	41.36	2.27
3325	3858	6.918067	CTTTCCTAAAAGGGATCCAGTTTT	57.082	37.500	21.47	21.47	38.59	2.43
3326	3859	7.303182	CTTTCCTAAAAGGGATCCAGTTTTT	57.697	36.000	22.43	20.50	38.59	1.94
3327	3860	6.664428	TTCCTAAAAGGGATCCAGTTTTTG	57.336	37.500	22.43	20.15	35.59	2.44
3328	3861	5.711698	TCCTAAAAGGGATCCAGTTTTTGT	58.288	37.500	22.43	7.66	35.59	2.83
3329	3862	6.140377	TCCTAAAAGGGATCCAGTTTTTGTT	58.860	36.000	22.43	7.38	35.59	2.83
3330	3863	6.613679	TCCTAAAAGGGATCCAGTTTTTGTTT	59.386	34.615	22.43	9.94	35.59	2.83
3331	3864	7.126573	TCCTAAAAGGGATCCAGTTTTTGTTTT	59.873	33.333	22.43	12.72	35.59	2.43
3332	3865	7.226523	CCTAAAAGGGATCCAGTTTTTGTTTTG	59.773	37.037	22.43	9.43	0.00	2.44
3333	3866	4.687901	AGGGATCCAGTTTTTGTTTTGG	57.312	40.909	15.23	0.00	0.00	3.28
3334	3867	3.138304	GGGATCCAGTTTTTGTTTTGGC	58.862	45.455	15.23	0.00	0.00	4.52
3335	3868	3.181455	GGGATCCAGTTTTTGTTTTGGCT	60.181	43.478	15.23	0.00	0.00	4.75
3336	3869	4.058124	GGATCCAGTTTTTGTTTTGGCTC	58.942	43.478	6.95	0.00	0.00	4.70
3337	3870	4.442753	GGATCCAGTTTTTGTTTTGGCTCA	60.443	41.667	6.95	0.00	29.63	4.26
3338	3871	4.751767	TCCAGTTTTTGTTTTGGCTCAT	57.248	36.364	0.00	0.00	0.00	2.90
3339	3872	5.860941	TCCAGTTTTTGTTTTGGCTCATA	57.139	34.783	0.00	0.00	0.00	2.15
3340	3873	5.841810	TCCAGTTTTTGTTTTGGCTCATAG	58.158	37.500	0.00	0.00	0.00	2.23
3341	3874	5.596361	TCCAGTTTTTGTTTTGGCTCATAGA	59.404	36.000	0.00	0.00	0.00	1.98
3342	3875	6.097554	TCCAGTTTTTGTTTTGGCTCATAGAA	59.902	34.615	0.00	0.00	0.00	2.10
3343	3876	6.421801	CCAGTTTTTGTTTTGGCTCATAGAAG	59.578	38.462	0.00	0.00	0.00	2.85
3344	3877	7.202526	CAGTTTTTGTTTTGGCTCATAGAAGA	58.797	34.615	0.00	0.00	0.00	2.87
3345	3878	7.869429	CAGTTTTTGTTTTGGCTCATAGAAGAT	59.131	33.333	0.00	0.00	0.00	2.40
3346	3879	8.424133	AGTTTTTGTTTTGGCTCATAGAAGATT	58.576	29.630	0.00	0.00	0.00	2.40
3347	3880	9.691362	GTTTTTGTTTTGGCTCATAGAAGATTA	57.309	29.630	0.00	0.00	0.00	1.75
3348	3881	9.912634	TTTTTGTTTTGGCTCATAGAAGATTAG	57.087	29.630	0.00	0.00	0.00	1.73
3349	3882	8.862325	TTTGTTTTGGCTCATAGAAGATTAGA	57.138	30.769	0.00	0.00	0.00	2.10
3350	3883	9.466497	TTTGTTTTGGCTCATAGAAGATTAGAT	57.534	29.630	0.00	0.00	0.00	1.98
3351	3884	9.466497	TTGTTTTGGCTCATAGAAGATTAGATT	57.534	29.630	0.00	0.00	0.00	2.40
3352	3885	9.466497	TGTTTTGGCTCATAGAAGATTAGATTT	57.534	29.630	0.00	0.00	0.00	2.17
3353	3886	9.727627	GTTTTGGCTCATAGAAGATTAGATTTG	57.272	33.333	0.00	0.00	0.00	2.32
3354	3887	7.502120	TTGGCTCATAGAAGATTAGATTTGC	57.498	36.000	0.00	0.00	0.00	3.68
3355	3888	6.594744	TGGCTCATAGAAGATTAGATTTGCA	58.405	36.000	0.00	0.00	0.00	4.08
3356	3889	7.056006	TGGCTCATAGAAGATTAGATTTGCAA	58.944	34.615	0.00	0.00	0.00	4.08
3357	3890	7.228108	TGGCTCATAGAAGATTAGATTTGCAAG	59.772	37.037	0.00	0.00	0.00	4.01
3358	3891	7.228308	GGCTCATAGAAGATTAGATTTGCAAGT	59.772	37.037	0.00	0.00	0.00	3.16
3359	3892	8.068977	GCTCATAGAAGATTAGATTTGCAAGTG	58.931	37.037	0.00	0.00	0.00	3.16
3360	3893	9.107177	CTCATAGAAGATTAGATTTGCAAGTGT	57.893	33.333	0.00	0.00	0.00	3.55
3361	3894	9.453572	TCATAGAAGATTAGATTTGCAAGTGTT	57.546	29.630	0.00	0.00	0.00	3.32
3373	3906	9.840427	AGATTTGCAAGTGTTATATTTACACAC	57.160	29.630	17.81	9.90	46.42	3.82
3383	3916	7.898309	GTGTTATATTTACACACTTCTGCTTCG	59.102	37.037	13.12	0.00	44.08	3.79
3384	3917	3.813529	ATTTACACACTTCTGCTTCGC	57.186	42.857	0.00	0.00	0.00	4.70
3385	3918	1.508632	TTACACACTTCTGCTTCGCC	58.491	50.000	0.00	0.00	0.00	5.54
3386	3919	0.320421	TACACACTTCTGCTTCGCCC	60.320	55.000	0.00	0.00	0.00	6.13
3387	3920	2.032681	ACACTTCTGCTTCGCCCC	59.967	61.111	0.00	0.00	0.00	5.80
3388	3921	2.747855	CACTTCTGCTTCGCCCCC	60.748	66.667	0.00	0.00	0.00	5.40
3402	3935	2.660802	CCCCCGTAAACTCACGCT	59.339	61.111	0.00	0.00	40.59	5.07
3403	3936	1.740296	CCCCCGTAAACTCACGCTG	60.740	63.158	0.00	0.00	40.59	5.18
3404	3937	2.388232	CCCCGTAAACTCACGCTGC	61.388	63.158	0.00	0.00	40.59	5.25
3405	3938	2.388232	CCCGTAAACTCACGCTGCC	61.388	63.158	0.00	0.00	40.59	4.85
3406	3939	1.374252	CCGTAAACTCACGCTGCCT	60.374	57.895	0.00	0.00	40.59	4.75
3407	3940	1.626654	CCGTAAACTCACGCTGCCTG	61.627	60.000	0.00	0.00	40.59	4.85
3408	3941	0.666274	CGTAAACTCACGCTGCCTGA	60.666	55.000	1.54	1.54	34.78	3.86
3409	3942	1.726853	GTAAACTCACGCTGCCTGAT	58.273	50.000	1.87	0.00	0.00	2.90
3410	3943	2.734175	CGTAAACTCACGCTGCCTGATA	60.734	50.000	1.87	0.00	34.78	2.15
3411	3944	1.726853	AAACTCACGCTGCCTGATAC	58.273	50.000	1.87	0.00	0.00	2.24
3412	3945	0.458543	AACTCACGCTGCCTGATACG	60.459	55.000	1.87	0.00	0.00	3.06
3413	3946	2.202743	TCACGCTGCCTGATACGC	60.203	61.111	0.00	0.00	0.00	4.42
3414	3947	2.509111	CACGCTGCCTGATACGCA	60.509	61.111	0.00	0.00	34.41	5.24
3415	3948	2.509336	ACGCTGCCTGATACGCAC	60.509	61.111	0.00	0.00	31.61	5.34
3416	3949	3.264897	CGCTGCCTGATACGCACC	61.265	66.667	0.00	0.00	31.61	5.01
3417	3950	2.897350	GCTGCCTGATACGCACCC	60.897	66.667	0.00	0.00	31.61	4.61
3418	3951	2.903357	CTGCCTGATACGCACCCT	59.097	61.111	0.00	0.00	31.61	4.34
3419	3952	1.522355	CTGCCTGATACGCACCCTG	60.522	63.158	0.00	0.00	31.61	4.45
3420	3953	2.244117	CTGCCTGATACGCACCCTGT	62.244	60.000	0.00	0.00	31.61	4.00
3421	3954	1.815421	GCCTGATACGCACCCTGTG	60.815	63.158	0.00	0.00	36.51	3.66
3422	3955	1.596934	CCTGATACGCACCCTGTGT	59.403	57.895	0.00	0.00	44.22	3.72
3423	3956	0.821517	CCTGATACGCACCCTGTGTA	59.178	55.000	0.00	0.00	45.90	2.90
3424	3957	1.470979	CCTGATACGCACCCTGTGTAC	60.471	57.143	0.00	0.00	44.84	2.90
3425	3958	0.171679	TGATACGCACCCTGTGTACG	59.828	55.000	0.00	0.00	44.84	3.67
3426	3959	0.171903	GATACGCACCCTGTGTACGT	59.828	55.000	0.00	0.00	44.84	3.57
3427	3960	1.401552	GATACGCACCCTGTGTACGTA	59.598	52.381	0.00	0.00	44.84	3.57
3428	3961	0.521291	TACGCACCCTGTGTACGTAC	59.479	55.000	18.90	18.90	41.83	3.67
3429	3962	1.444895	CGCACCCTGTGTACGTACC	60.445	63.158	22.43	14.05	35.75	3.34
3430	3963	1.444895	GCACCCTGTGTACGTACCG	60.445	63.158	22.43	10.86	35.75	4.02
3431	3964	1.444895	CACCCTGTGTACGTACCGC	60.445	63.158	22.43	15.33	0.00	5.68
3432	3965	1.604593	ACCCTGTGTACGTACCGCT	60.605	57.895	22.43	0.00	0.00	5.52
3433	3966	1.138247	CCCTGTGTACGTACCGCTC	59.862	63.158	22.43	10.89	0.00	5.03
3434	3967	1.588824	CCCTGTGTACGTACCGCTCA	61.589	60.000	22.43	14.37	0.00	4.26
3435	3968	0.454600	CCTGTGTACGTACCGCTCAT	59.545	55.000	22.43	0.00	0.00	2.90
3436	3969	1.672363	CCTGTGTACGTACCGCTCATA	59.328	52.381	22.43	0.00	0.00	2.15
3437	3970	2.540361	CCTGTGTACGTACCGCTCATAC	60.540	54.545	22.43	12.38	0.00	2.39
3438	3971	2.083002	TGTGTACGTACCGCTCATACA	58.917	47.619	22.43	14.73	0.00	2.29
3439	3972	2.159531	TGTGTACGTACCGCTCATACAC	60.160	50.000	22.43	13.52	43.78	2.90
3440	3973	1.062440	TGTACGTACCGCTCATACACG	59.938	52.381	22.43	0.00	38.52	4.49
3441	3974	1.062587	GTACGTACCGCTCATACACGT	59.937	52.381	15.00	3.46	46.49	4.49
3442	3975	0.523072	ACGTACCGCTCATACACGTT	59.477	50.000	0.00	0.00	42.69	3.99
3443	3976	1.068333	ACGTACCGCTCATACACGTTT	60.068	47.619	0.00	0.00	42.69	3.60
3444	3977	1.987770	CGTACCGCTCATACACGTTTT	59.012	47.619	0.00	0.00	0.00	2.43
3445	3978	2.409378	CGTACCGCTCATACACGTTTTT	59.591	45.455	0.00	0.00	0.00	1.94
3484	4017	9.823647	TTTTTAATCTTTAAGAAATGTGTGCCA	57.176	25.926	0.00	0.00	0.00	4.92
3485	4018	8.810652	TTTAATCTTTAAGAAATGTGTGCCAC	57.189	30.769	0.00	0.00	34.56	5.01
3486	4019	4.481930	TCTTTAAGAAATGTGTGCCACG	57.518	40.909	0.00	0.00	37.14	4.94
3487	4020	3.252215	TCTTTAAGAAATGTGTGCCACGG	59.748	43.478	0.00	0.00	37.14	4.94
3488	4021	1.529226	TAAGAAATGTGTGCCACGGG	58.471	50.000	0.00	0.00	37.14	5.28
3508	4041	1.641577	CGATTCGAACTCCAACCCTC	58.358	55.000	0.00	0.00	0.00	4.30
3538	4071	4.895961	ACTTCAGCTTCTAGTAACCAACC	58.104	43.478	0.00	0.00	0.00	3.77
3539	4072	4.347000	ACTTCAGCTTCTAGTAACCAACCA	59.653	41.667	0.00	0.00	0.00	3.67
3540	4073	4.967084	TCAGCTTCTAGTAACCAACCAA	57.033	40.909	0.00	0.00	0.00	3.67
3580	4113	7.138736	TGTTATGCACACTAGCTTTCTTTTTC	58.861	34.615	0.00	0.00	34.99	2.29
3586	4119	4.816925	ACACTAGCTTTCTTTTTCGCTTCT	59.183	37.500	0.00	0.00	34.14	2.85
3593	4126	6.017109	AGCTTTCTTTTTCGCTTCTTATGTGA	60.017	34.615	0.00	0.00	0.00	3.58
3594	4127	6.803807	GCTTTCTTTTTCGCTTCTTATGTGAT	59.196	34.615	0.00	0.00	0.00	3.06
3798	4349	6.034470	GTGAACTTTGTTTGAAAATCTGCGAA	59.966	34.615	0.00	0.00	0.00	4.70
3801	4352	7.357951	ACTTTGTTTGAAAATCTGCGAAAAA	57.642	28.000	0.00	0.00	0.00	1.94
3804	4355	9.276397	CTTTGTTTGAAAATCTGCGAAAAATTT	57.724	25.926	0.00	0.00	0.00	1.82
3896	4463	0.392595	GCCTGGGCTAAAGCGTAAGT	60.393	55.000	4.12	0.00	43.26	2.24
3898	4465	1.338769	CCTGGGCTAAAGCGTAAGTGT	60.339	52.381	0.00	0.00	43.26	3.55
4010	4579	9.465985	GTTCGAAAATTTGAGGTATACCAAAAA	57.534	29.630	23.87	20.95	36.10	1.94
4076	4645	1.450848	CATGGTCGCAGATGCACCT	60.451	57.895	19.88	0.00	40.67	4.00
4113	4682	1.414181	CACACTCCTCTCAACTGGTGT	59.586	52.381	0.00	0.00	38.24	4.16
4152	4724	7.180051	TGAATAAATAACCCCAACTTCTTGCAT	59.820	33.333	0.00	0.00	0.00	3.96
4158	4730	2.170166	CCCAACTTCTTGCATAAGCCA	58.830	47.619	8.77	0.00	41.13	4.75
4184	4756	2.027837	CGGACATATGAGGCATCCATGA	60.028	50.000	10.38	0.00	0.00	3.07
4186	4758	2.998670	GACATATGAGGCATCCATGACG	59.001	50.000	10.38	0.00	41.91	4.35
4198	4770	2.710377	TCCATGACGGGTTTGAATGAG	58.290	47.619	0.00	0.00	34.36	2.90
4230	6545	3.494232	GTTTGCACGTTGTAACACAGTT	58.506	40.909	0.00	0.00	0.00	3.16
4340	6661	7.722949	ATTGGTCACATAATCTGGTGAAAAT	57.277	32.000	0.00	0.00	44.83	1.82
4409	6741	0.597637	ACTCTTCTGGCACGAACACG	60.598	55.000	0.00	0.00	0.00	4.49
4410	6742	0.597637	CTCTTCTGGCACGAACACGT	60.598	55.000	0.00	0.00	41.02	4.49
4615	6949	9.509855	AAAAAGAAACAAGAAACAAAAACCAAC	57.490	25.926	0.00	0.00	0.00	3.77
4680	7014	4.448210	AGAAAAAGACCAGTTCGCTACAA	58.552	39.130	0.00	0.00	0.00	2.41
4786	7121	2.618053	CGTTTAGCAGTGGGAGTTAGG	58.382	52.381	0.00	0.00	0.00	2.69
4787	7122	2.677037	CGTTTAGCAGTGGGAGTTAGGG	60.677	54.545	0.00	0.00	0.00	3.53
4788	7123	0.909623	TTAGCAGTGGGAGTTAGGGC	59.090	55.000	0.00	0.00	0.00	5.19
4789	7124	0.252513	TAGCAGTGGGAGTTAGGGCA	60.253	55.000	0.00	0.00	0.00	5.36
4790	7125	0.916358	AGCAGTGGGAGTTAGGGCAT	60.916	55.000	0.00	0.00	0.00	4.40
4791	7126	0.464554	GCAGTGGGAGTTAGGGCATC	60.465	60.000	0.00	0.00	0.00	3.91
4792	7127	1.207791	CAGTGGGAGTTAGGGCATCT	58.792	55.000	0.00	0.00	0.00	2.90
4793	7128	1.139853	CAGTGGGAGTTAGGGCATCTC	59.860	57.143	0.00	0.00	0.00	2.75
4794	7129	0.470341	GTGGGAGTTAGGGCATCTCC	59.530	60.000	0.00	0.00	44.78	3.71
4795	7130	0.044092	TGGGAGTTAGGGCATCTCCA	59.956	55.000	8.85	0.00	46.61	3.86
4796	7131	1.213296	GGGAGTTAGGGCATCTCCAA	58.787	55.000	8.85	0.00	46.61	3.53
4797	7132	1.777272	GGGAGTTAGGGCATCTCCAAT	59.223	52.381	8.85	0.00	46.61	3.16
4798	7133	2.487986	GGGAGTTAGGGCATCTCCAATG	60.488	54.545	8.85	0.00	46.61	2.82
4799	7134	2.225467	GAGTTAGGGCATCTCCAATGC	58.775	52.381	1.40	1.40	43.85	3.56
4804	7139	3.126528	GCATCTCCAATGCCCAGC	58.873	61.111	0.00	0.00	39.01	4.85
4805	7140	2.842256	GCATCTCCAATGCCCAGCG	61.842	63.158	0.00	0.00	39.01	5.18
4806	7141	2.517875	ATCTCCAATGCCCAGCGC	60.518	61.111	0.00	0.00	38.31	5.92
4807	7142	3.052909	ATCTCCAATGCCCAGCGCT	62.053	57.895	2.64	2.64	38.78	5.92
4808	7143	1.699054	ATCTCCAATGCCCAGCGCTA	61.699	55.000	10.99	0.00	38.78	4.26
4809	7144	1.451927	CTCCAATGCCCAGCGCTAA	60.452	57.895	10.99	0.00	38.78	3.09
4810	7145	1.001517	TCCAATGCCCAGCGCTAAA	60.002	52.632	10.99	0.00	38.78	1.85
4811	7146	1.031571	TCCAATGCCCAGCGCTAAAG	61.032	55.000	10.99	2.25	38.78	1.85
4812	7147	1.226773	CAATGCCCAGCGCTAAAGC	60.227	57.895	10.99	14.35	38.78	3.51
4813	7148	1.678635	AATGCCCAGCGCTAAAGCA	60.679	52.632	24.66	24.66	42.21	3.91
4814	7149	1.660560	AATGCCCAGCGCTAAAGCAG	61.661	55.000	25.82	8.49	42.21	4.24
4815	7150	3.512516	GCCCAGCGCTAAAGCAGG	61.513	66.667	10.99	5.79	42.57	4.85
4828	7163	2.584608	GCAGGGCGCTAGGAAAGA	59.415	61.111	7.64	0.00	37.77	2.52
4829	7164	1.147153	GCAGGGCGCTAGGAAAGAT	59.853	57.895	7.64	0.00	37.77	2.40
4830	7165	0.464554	GCAGGGCGCTAGGAAAGATT	60.465	55.000	7.64	0.00	37.77	2.40
4831	7166	2.019156	GCAGGGCGCTAGGAAAGATTT	61.019	52.381	7.64	0.00	37.77	2.17
4832	7167	1.943340	CAGGGCGCTAGGAAAGATTTC	59.057	52.381	7.64	0.00	36.46	2.17
4842	7177	0.173481	GAAAGATTTCCCGGCCAAGC	59.827	55.000	2.24	0.00	0.00	4.01
4843	7178	1.595093	AAAGATTTCCCGGCCAAGCG	61.595	55.000	2.24	0.00	0.00	4.68
4844	7179	2.437716	GATTTCCCGGCCAAGCGA	60.438	61.111	2.24	0.00	0.00	4.93
4845	7180	2.750237	ATTTCCCGGCCAAGCGAC	60.750	61.111	2.24	0.00	0.00	5.19
4850	7185	4.745751	CCGGCCAAGCGACGGTTA	62.746	66.667	12.54	0.00	42.53	2.85
4851	7186	3.484547	CGGCCAAGCGACGGTTAC	61.485	66.667	12.54	7.64	0.00	2.50
4852	7187	2.357760	GGCCAAGCGACGGTTACA	60.358	61.111	12.54	0.00	0.00	2.41
4853	7188	1.743995	GGCCAAGCGACGGTTACAT	60.744	57.895	12.54	0.00	0.00	2.29
4854	7189	1.702491	GGCCAAGCGACGGTTACATC	61.702	60.000	12.54	2.08	0.00	3.06
4855	7190	1.017177	GCCAAGCGACGGTTACATCA	61.017	55.000	12.54	0.00	0.00	3.07
4856	7191	1.651987	CCAAGCGACGGTTACATCAT	58.348	50.000	12.54	0.00	0.00	2.45
4857	7192	1.327460	CCAAGCGACGGTTACATCATG	59.673	52.381	12.54	0.00	0.00	3.07
4858	7193	1.327460	CAAGCGACGGTTACATCATGG	59.673	52.381	12.54	0.00	0.00	3.66
4859	7194	0.821517	AGCGACGGTTACATCATGGA	59.178	50.000	0.00	0.00	0.00	3.41
4860	7195	1.412710	AGCGACGGTTACATCATGGAT	59.587	47.619	0.00	0.00	0.00	3.41
4861	7196	2.158957	AGCGACGGTTACATCATGGATT	60.159	45.455	0.00	0.00	0.00	3.01
4862	7197	2.221055	GCGACGGTTACATCATGGATTC	59.779	50.000	0.00	0.00	0.00	2.52
4863	7198	2.800544	CGACGGTTACATCATGGATTCC	59.199	50.000	0.00	0.00	0.00	3.01
4864	7199	3.139077	GACGGTTACATCATGGATTCCC	58.861	50.000	0.00	0.00	0.00	3.97
4882	7217	4.575973	AGCATCGGGGCTGGCATC	62.576	66.667	2.88	0.00	43.89	3.91
4884	7219	4.240103	CATCGGGGCTGGCATCGA	62.240	66.667	17.61	17.61	36.07	3.59
4885	7220	3.244580	ATCGGGGCTGGCATCGAT	61.245	61.111	19.85	19.85	37.50	3.59
4886	7221	3.541950	ATCGGGGCTGGCATCGATG	62.542	63.158	21.27	21.27	40.27	3.84
4901	7236	4.397382	CATCGATGCCAAATATAACAGCG	58.603	43.478	13.37	0.00	42.78	5.18
4903	7238	3.740832	TCGATGCCAAATATAACAGCGAG	59.259	43.478	0.00	0.00	44.81	5.03
4904	7239	3.665323	CGATGCCAAATATAACAGCGAGC	60.665	47.826	0.00	0.00	44.03	5.03
4905	7240	1.597195	TGCCAAATATAACAGCGAGCG	59.403	47.619	0.00	0.00	0.00	5.03
4906	7241	1.660333	GCCAAATATAACAGCGAGCGC	60.660	52.381	6.78	6.78	42.33	5.92
4921	7256	1.710339	GCGCTTAGTGCTTTCTCCG	59.290	57.895	10.83	0.00	40.11	4.63
4922	7257	1.710339	CGCTTAGTGCTTTCTCCGC	59.290	57.895	0.00	0.00	40.11	5.54
4923	7258	1.014044	CGCTTAGTGCTTTCTCCGCA	61.014	55.000	0.00	0.00	40.11	5.69
4928	7263	4.063529	TGCTTTCTCCGCACAAGG	57.936	55.556	0.00	0.00	31.40	3.61
4929	7264	1.148273	TGCTTTCTCCGCACAAGGT	59.852	52.632	0.00	0.00	31.40	3.50
4930	7265	1.165907	TGCTTTCTCCGCACAAGGTG	61.166	55.000	0.00	0.00	36.51	4.00
4931	7266	0.884704	GCTTTCTCCGCACAAGGTGA	60.885	55.000	0.00	0.00	35.23	4.02
4932	7267	1.151668	CTTTCTCCGCACAAGGTGAG	58.848	55.000	0.00	0.00	35.23	3.51
4936	7271	3.052082	CCGCACAAGGTGAGGCAG	61.052	66.667	6.21	0.00	45.37	4.85
4937	7272	2.031012	CGCACAAGGTGAGGCAGA	59.969	61.111	0.00	0.00	35.23	4.26
4938	7273	1.597854	CGCACAAGGTGAGGCAGAA	60.598	57.895	0.00	0.00	35.23	3.02
4939	7274	1.165907	CGCACAAGGTGAGGCAGAAA	61.166	55.000	0.00	0.00	35.23	2.52
4940	7275	1.251251	GCACAAGGTGAGGCAGAAAT	58.749	50.000	0.00	0.00	35.23	2.17
4941	7276	1.200948	GCACAAGGTGAGGCAGAAATC	59.799	52.381	0.00	0.00	35.23	2.17
4942	7277	1.466167	CACAAGGTGAGGCAGAAATCG	59.534	52.381	0.00	0.00	35.23	3.34
4943	7278	1.072331	ACAAGGTGAGGCAGAAATCGT	59.928	47.619	0.00	0.00	0.00	3.73
4944	7279	1.466167	CAAGGTGAGGCAGAAATCGTG	59.534	52.381	0.00	0.00	0.00	4.35
4945	7280	0.687354	AGGTGAGGCAGAAATCGTGT	59.313	50.000	0.00	0.00	0.00	4.49
4946	7281	1.072331	AGGTGAGGCAGAAATCGTGTT	59.928	47.619	0.00	0.00	0.00	3.32
4947	7282	1.464997	GGTGAGGCAGAAATCGTGTTC	59.535	52.381	0.00	0.00	0.00	3.18
4948	7283	1.464997	GTGAGGCAGAAATCGTGTTCC	59.535	52.381	0.00	0.00	0.00	3.62
4949	7284	1.347707	TGAGGCAGAAATCGTGTTCCT	59.652	47.619	0.00	0.00	0.00	3.36
4950	7285	1.734465	GAGGCAGAAATCGTGTTCCTG	59.266	52.381	0.00	0.00	0.00	3.86
4951	7286	1.347707	AGGCAGAAATCGTGTTCCTGA	59.652	47.619	0.00	0.00	0.00	3.86
4952	7287	1.734465	GGCAGAAATCGTGTTCCTGAG	59.266	52.381	0.00	0.00	0.00	3.35
4953	7288	1.129437	GCAGAAATCGTGTTCCTGAGC	59.871	52.381	0.00	0.00	0.00	4.26
4954	7289	1.734465	CAGAAATCGTGTTCCTGAGCC	59.266	52.381	0.00	0.00	0.00	4.70
4955	7290	0.721718	GAAATCGTGTTCCTGAGCCG	59.278	55.000	0.00	0.00	0.00	5.52
4956	7291	0.034896	AAATCGTGTTCCTGAGCCGT	59.965	50.000	0.00	0.00	0.00	5.68
4957	7292	0.892755	AATCGTGTTCCTGAGCCGTA	59.107	50.000	0.00	0.00	0.00	4.02
4958	7293	1.112113	ATCGTGTTCCTGAGCCGTAT	58.888	50.000	0.00	0.00	0.00	3.06
4959	7294	0.892755	TCGTGTTCCTGAGCCGTATT	59.107	50.000	0.00	0.00	0.00	1.89
4960	7295	2.093890	TCGTGTTCCTGAGCCGTATTA	58.906	47.619	0.00	0.00	0.00	0.98
4961	7296	2.492881	TCGTGTTCCTGAGCCGTATTAA	59.507	45.455	0.00	0.00	0.00	1.40
4962	7297	2.858344	CGTGTTCCTGAGCCGTATTAAG	59.142	50.000	0.00	0.00	0.00	1.85
4963	7298	2.608090	GTGTTCCTGAGCCGTATTAAGC	59.392	50.000	0.00	0.00	0.00	3.09
4964	7299	1.859080	GTTCCTGAGCCGTATTAAGCG	59.141	52.381	0.00	0.00	0.00	4.68
4965	7300	1.108776	TCCTGAGCCGTATTAAGCGT	58.891	50.000	2.35	0.00	0.00	5.07
4966	7301	1.479323	TCCTGAGCCGTATTAAGCGTT	59.521	47.619	2.35	0.00	0.00	4.84
4967	7302	1.593006	CCTGAGCCGTATTAAGCGTTG	59.407	52.381	2.35	0.00	0.00	4.10
4968	7303	1.593006	CTGAGCCGTATTAAGCGTTGG	59.407	52.381	2.35	0.00	0.00	3.77
4969	7304	1.066716	TGAGCCGTATTAAGCGTTGGT	60.067	47.619	2.35	0.00	0.00	3.67
4970	7305	2.166050	TGAGCCGTATTAAGCGTTGGTA	59.834	45.455	2.35	0.00	0.00	3.25
4971	7306	2.537214	GAGCCGTATTAAGCGTTGGTAC	59.463	50.000	2.35	0.00	0.00	3.34
4972	7307	2.167075	AGCCGTATTAAGCGTTGGTACT	59.833	45.455	0.00	0.00	0.00	2.73
4973	7308	2.931969	GCCGTATTAAGCGTTGGTACTT	59.068	45.455	0.00	0.00	0.00	2.24
4974	7309	4.111916	GCCGTATTAAGCGTTGGTACTTA	58.888	43.478	0.00	0.00	0.00	2.24
4975	7310	4.207841	GCCGTATTAAGCGTTGGTACTTAG	59.792	45.833	0.00	0.00	30.47	2.18
4976	7311	4.207841	CCGTATTAAGCGTTGGTACTTAGC	59.792	45.833	0.00	0.00	30.47	3.09
4977	7312	4.085924	CGTATTAAGCGTTGGTACTTAGCG	60.086	45.833	0.00	0.00	30.47	4.26
4979	7314	3.087176	GCGTTGGTACTTAGCGCC	58.913	61.111	16.43	0.00	41.93	6.53
4980	7315	1.447314	GCGTTGGTACTTAGCGCCT	60.447	57.895	16.43	0.00	41.93	5.52
4981	7316	1.017701	GCGTTGGTACTTAGCGCCTT	61.018	55.000	16.43	0.00	41.93	4.35
4982	7317	0.719465	CGTTGGTACTTAGCGCCTTG	59.281	55.000	2.29	0.00	0.00	3.61
4983	7318	0.446616	GTTGGTACTTAGCGCCTTGC	59.553	55.000	2.29	0.00	46.98	4.01
4994	7329	4.065110	GCCTTGCGTTGGAAGAGT	57.935	55.556	0.00	0.00	0.00	3.24
4995	7330	2.331265	GCCTTGCGTTGGAAGAGTT	58.669	52.632	0.00	0.00	0.00	3.01
4996	7331	1.519408	GCCTTGCGTTGGAAGAGTTA	58.481	50.000	0.00	0.00	0.00	2.24
4997	7332	1.877443	GCCTTGCGTTGGAAGAGTTAA	59.123	47.619	0.00	0.00	0.00	2.01
4998	7333	2.350484	GCCTTGCGTTGGAAGAGTTAAC	60.350	50.000	0.00	0.00	0.00	2.01
5006	7341	6.257169	CGTTGGAAGAGTTAACGCTTATAG	57.743	41.667	22.31	10.21	40.31	1.31
5007	7342	5.231568	CGTTGGAAGAGTTAACGCTTATAGG	59.768	44.000	22.31	12.85	40.31	2.57
5008	7343	4.690122	TGGAAGAGTTAACGCTTATAGGC	58.310	43.478	22.31	10.93	36.14	3.93
5009	7344	4.056740	GGAAGAGTTAACGCTTATAGGCC	58.943	47.826	22.31	15.49	36.14	5.19
5010	7345	4.202233	GGAAGAGTTAACGCTTATAGGCCT	60.202	45.833	22.31	11.78	36.14	5.19
5011	7346	5.354842	AAGAGTTAACGCTTATAGGCCTT	57.645	39.130	21.19	0.81	34.25	4.35
5012	7347	5.354842	AGAGTTAACGCTTATAGGCCTTT	57.645	39.130	12.58	5.50	0.00	3.11
5013	7348	5.742063	AGAGTTAACGCTTATAGGCCTTTT	58.258	37.500	12.58	0.84	0.00	2.27
5014	7349	6.881570	AGAGTTAACGCTTATAGGCCTTTTA	58.118	36.000	12.58	0.00	0.00	1.52
5015	7350	7.506971	AGAGTTAACGCTTATAGGCCTTTTAT	58.493	34.615	12.58	0.00	0.00	1.40
5016	7351	8.645110	AGAGTTAACGCTTATAGGCCTTTTATA	58.355	33.333	12.58	0.00	0.00	0.98
5017	7352	9.264719	GAGTTAACGCTTATAGGCCTTTTATAA	57.735	33.333	12.58	8.54	0.00	0.98
5018	7353	9.617523	AGTTAACGCTTATAGGCCTTTTATAAA	57.382	29.630	12.58	0.00	0.00	1.40
5023	7358	9.961265	ACGCTTATAGGCCTTTTATAAATTTTC	57.039	29.630	12.58	0.00	0.00	2.29
5054	7389	3.915437	TTTTCTTTTCTAAGCGCCTGG	57.085	42.857	2.29	0.00	0.00	4.45
5055	7390	2.851263	TTCTTTTCTAAGCGCCTGGA	57.149	45.000	2.29	0.00	0.00	3.86
5056	7391	3.350219	TTCTTTTCTAAGCGCCTGGAT	57.650	42.857	2.29	0.00	0.00	3.41
5057	7392	4.481368	TTCTTTTCTAAGCGCCTGGATA	57.519	40.909	2.29	0.00	0.00	2.59
5058	7393	4.481368	TCTTTTCTAAGCGCCTGGATAA	57.519	40.909	2.29	0.00	0.00	1.75
5059	7394	4.442706	TCTTTTCTAAGCGCCTGGATAAG	58.557	43.478	13.79	13.79	0.00	1.73
5060	7395	2.240493	TTCTAAGCGCCTGGATAAGC	57.760	50.000	2.29	0.00	0.00	3.09
5065	7400	4.750460	CGCCTGGATAAGCGCTTA	57.250	55.556	30.48	30.48	46.50	3.09
5066	7401	2.226269	CGCCTGGATAAGCGCTTAC	58.774	57.895	30.92	22.53	46.50	2.34
5067	7402	1.222115	CGCCTGGATAAGCGCTTACC	61.222	60.000	30.92	28.97	46.50	2.85
5068	7403	0.179056	GCCTGGATAAGCGCTTACCA	60.179	55.000	31.44	31.44	0.00	3.25
5069	7404	1.543429	GCCTGGATAAGCGCTTACCAT	60.543	52.381	32.62	22.08	31.14	3.55
5070	7405	2.851195	CCTGGATAAGCGCTTACCATT	58.149	47.619	32.62	20.97	31.14	3.16
5071	7406	2.549754	CCTGGATAAGCGCTTACCATTG	59.450	50.000	32.62	26.21	31.14	2.82
5072	7407	2.549754	CTGGATAAGCGCTTACCATTGG	59.450	50.000	32.62	23.88	31.14	3.16
5073	7408	2.171659	TGGATAAGCGCTTACCATTGGA	59.828	45.455	30.74	15.00	0.00	3.53
5074	7409	2.548480	GGATAAGCGCTTACCATTGGAC	59.452	50.000	30.92	14.10	0.00	4.02
5075	7410	2.772077	TAAGCGCTTACCATTGGACA	57.228	45.000	25.53	1.40	0.00	4.02
5076	7411	2.128771	AAGCGCTTACCATTGGACAT	57.871	45.000	23.72	0.00	0.00	3.06
5077	7412	1.382522	AGCGCTTACCATTGGACATG	58.617	50.000	2.64	0.00	0.00	3.21
5078	7413	0.248621	GCGCTTACCATTGGACATGC	60.249	55.000	10.37	9.31	0.00	4.06
5079	7414	0.381801	CGCTTACCATTGGACATGCC	59.618	55.000	10.37	0.00	37.10	4.40
5080	7415	0.746659	GCTTACCATTGGACATGCCC	59.253	55.000	10.37	0.00	34.97	5.36
5106	7441	1.065709	GGGTTAGATCCCTCGCACAAA	60.066	52.381	0.00	0.00	43.85	2.83
5113	7448	0.608035	TCCCTCGCACAAACCATTCC	60.608	55.000	0.00	0.00	0.00	3.01
5155	7492	3.499737	CCACGAGCGACAATGGCC	61.500	66.667	0.00	0.00	0.00	5.36
5198	7535	2.701006	CGTGGCGCCGTCTATTTG	59.299	61.111	23.90	0.53	0.00	2.32
5199	7536	1.807981	CGTGGCGCCGTCTATTTGA	60.808	57.895	23.90	0.00	0.00	2.69
5200	7537	1.713830	GTGGCGCCGTCTATTTGAC	59.286	57.895	23.90	7.01	42.06	3.18
5210	7547	2.618053	GTCTATTTGACGGGGTCACTG	58.382	52.381	0.00	0.00	42.60	3.66
5211	7548	2.232941	GTCTATTTGACGGGGTCACTGA	59.767	50.000	0.00	0.00	42.60	3.41
5212	7549	3.104512	TCTATTTGACGGGGTCACTGAT	58.895	45.455	0.00	0.00	42.60	2.90
5213	7550	4.098960	GTCTATTTGACGGGGTCACTGATA	59.901	45.833	0.00	0.00	42.60	2.15
5214	7551	4.899457	TCTATTTGACGGGGTCACTGATAT	59.101	41.667	0.00	0.00	42.60	1.63
5215	7552	2.979814	TTGACGGGGTCACTGATATG	57.020	50.000	0.00	0.00	42.60	1.78
5216	7553	1.860641	TGACGGGGTCACTGATATGT	58.139	50.000	0.00	0.00	37.67	2.29
5217	7554	1.754803	TGACGGGGTCACTGATATGTC	59.245	52.381	0.00	0.00	37.67	3.06
5218	7555	2.032620	GACGGGGTCACTGATATGTCT	58.967	52.381	0.00	0.00	32.09	3.41
5246	7590	0.806241	GCGAGACGAGAGGAAGTCTT	59.194	55.000	0.00	0.00	46.52	3.01
5253	7597	2.564947	ACGAGAGGAAGTCTTGCTGAAT	59.435	45.455	11.83	0.00	40.12	2.57
5254	7598	3.007398	ACGAGAGGAAGTCTTGCTGAATT	59.993	43.478	11.83	0.00	40.12	2.17
5310	7663	5.072193	ACAGGTCACATGCCATATTCTCATA	59.928	40.000	0.00	0.00	0.00	2.15
5887	8271	9.248291	AGCATTTGAAAACTGTTAAATGTGTAG	57.752	29.630	20.08	4.35	40.70	2.74
5915	8299	8.419076	AAAAGTGTTGACCATGTATTCAAAAC	57.581	30.769	11.66	11.66	39.40	2.43
6000	8385	6.844097	TGTGTAAAGAAAAAGTGAAACCCT	57.156	33.333	0.00	0.00	37.80	4.34
6023	8408	7.281999	CCCTAGAGAGAGAAAATGGATGAAAAC	59.718	40.741	0.00	0.00	0.00	2.43
6103	8489	6.944557	AACCGTGAAAGAAACAAAGAAAAG	57.055	33.333	0.00	0.00	0.00	2.27
6109	8495	7.201435	CGTGAAAGAAACAAAGAAAAGGAAAGG	60.201	37.037	0.00	0.00	0.00	3.11
6253	8649	8.343366	TCAAGTAAGTCACGCTCTACTATTATG	58.657	37.037	0.00	0.00	0.00	1.90
6258	8654	5.589050	AGTCACGCTCTACTATTATGTCACA	59.411	40.000	0.00	0.00	0.00	3.58
6259	8655	6.095021	AGTCACGCTCTACTATTATGTCACAA	59.905	38.462	0.00	0.00	0.00	3.33
6276	8672	2.484264	CACAAAAAGCCGAGAACTAGGG	59.516	50.000	0.00	0.00	0.00	3.53
6297	8693	1.832608	CCCGAGATCGATCCCACCA	60.833	63.158	21.66	0.00	43.02	4.17
6305	8702	0.976073	TCGATCCCACCACTCCCTTC	60.976	60.000	0.00	0.00	0.00	3.46
6306	8703	1.264749	CGATCCCACCACTCCCTTCA	61.265	60.000	0.00	0.00	0.00	3.02
6313	8710	3.010138	CCCACCACTCCCTTCAAATTCTA	59.990	47.826	0.00	0.00	0.00	2.10
6318	8715	7.229506	CCACCACTCCCTTCAAATTCTATATTC	59.770	40.741	0.00	0.00	0.00	1.75
6321	8720	9.413734	CCACTCCCTTCAAATTCTATATTCTTT	57.586	33.333	0.00	0.00	0.00	2.52
6359	8758	0.248289	GGGCTGGCTCGTTACTGTAA	59.752	55.000	0.00	0.00	0.00	2.41
6360	8759	1.356938	GGCTGGCTCGTTACTGTAAC	58.643	55.000	18.43	18.43	35.37	2.50
6366	8765	3.005261	TGGCTCGTTACTGTAACCGTTTA	59.995	43.478	21.43	6.38	35.27	2.01
6370	8769	3.987220	TCGTTACTGTAACCGTTTAAGCC	59.013	43.478	21.43	0.00	35.27	4.35
6392	8791	1.080093	GATCCTTCCACGTGCGACA	60.080	57.895	10.91	0.00	0.00	4.35
6430	8829	5.063180	ACGACTCACCATACATACGAAAA	57.937	39.130	0.00	0.00	0.00	2.29
6437	8836	6.050432	TCACCATACATACGAAAATGGGTAC	58.950	40.000	5.29	0.00	42.66	3.34
6439	8838	5.051816	CCATACATACGAAAATGGGTACGT	58.948	41.667	0.00	0.00	41.66	3.57
6444	8843	5.239087	ACATACGAAAATGGGTACGTTTTGT	59.761	36.000	0.00	0.00	43.80	2.83
6498	8898	5.009710	GCCAAAGGTCTATATTGCCCTTTAC	59.990	44.000	11.08	4.62	43.61	2.01
6499	8899	5.238650	CCAAAGGTCTATATTGCCCTTTACG	59.761	44.000	11.08	2.13	43.61	3.18
6567	8974	3.906720	TCCAGTTTTTATCTCCTCCCG	57.093	47.619	0.00	0.00	0.00	5.14
6581	8988	1.949525	CCTCCCGCATTGGACAAATAG	59.050	52.381	0.00	0.00	42.00	1.73
6666	9302	7.386059	AGTCCAAACTTTGTTGAAACAGAAAT	58.614	30.769	0.88	0.00	40.50	2.17
6671	9307	6.991485	ACTTTGTTGAAACAGAAATATGCG	57.009	33.333	0.00	0.00	40.50	4.73
6697	9340	1.272037	TGCTGTTGAATCATGGAGCCA	60.272	47.619	0.00	0.00	0.00	4.75
6705	9351	4.598022	TGAATCATGGAGCCACATTACAA	58.402	39.130	0.00	0.00	0.00	2.41
6706	9352	5.202765	TGAATCATGGAGCCACATTACAAT	58.797	37.500	0.00	0.00	0.00	2.71
6707	9353	5.068067	TGAATCATGGAGCCACATTACAATG	59.932	40.000	0.37	0.37	42.10	2.82
6708	9354	2.689471	TCATGGAGCCACATTACAATGC	59.311	45.455	1.84	0.00	40.04	3.56
6718	9364	4.380339	CCACATTACAATGCATGAAACGGA	60.380	41.667	0.00	0.00	40.04	4.69
6731	9377	4.857871	TGAAACGGATCTTCATTAAGCG	57.142	40.909	0.00	0.00	32.36	4.68
6741	9387	7.645340	CGGATCTTCATTAAGCGATTCAAAAAT	59.355	33.333	0.00	0.00	32.36	1.82
6742	9388	9.305925	GGATCTTCATTAAGCGATTCAAAAATT	57.694	29.630	0.00	0.00	32.36	1.82
6859	9517	9.677567	CACTTAGCTTATTTGAAGCAAAAACTA	57.322	29.630	11.56	0.00	45.30	2.24
6908	9599	6.884295	TCATTTCTTAATGGGACCTACAACAG	59.116	38.462	0.00	0.00	41.23	3.16
6914	9605	0.175073	GGGACCTACAACAGCCGTAG	59.825	60.000	0.00	0.00	36.83	3.51
6931	9622	2.776370	TAGCGACCGGACCTCCAACT	62.776	60.000	9.46	0.00	35.14	3.16
6933	9624	1.977544	CGACCGGACCTCCAACTCT	60.978	63.158	9.46	0.00	35.14	3.24
6939	9630	1.348036	CGGACCTCCAACTCTCCTTTT	59.652	52.381	0.00	0.00	35.14	2.27
6961	9653	5.982890	TCATAGATGTCAACTCTCACACA	57.017	39.130	0.00	0.00	0.00	3.72
7001	9709	2.906897	CACCACAGGCACACCACC	60.907	66.667	0.00	0.00	39.06	4.61
7004	9712	4.562425	CACAGGCACACCACCCGT	62.562	66.667	0.00	0.00	39.06	5.28
7005	9713	2.845317	ACAGGCACACCACCCGTA	60.845	61.111	0.00	0.00	39.06	4.02
7007	9715	1.228003	CAGGCACACCACCCGTAAA	60.228	57.895	0.00	0.00	39.06	2.01
7019	9728	0.104304	CCCGTAAATCCTCCCTGTCG	59.896	60.000	0.00	0.00	0.00	4.35
7020	9729	1.108776	CCGTAAATCCTCCCTGTCGA	58.891	55.000	0.00	0.00	0.00	4.20
7021	9730	1.687123	CCGTAAATCCTCCCTGTCGAT	59.313	52.381	0.00	0.00	0.00	3.59
7022	9731	2.102588	CCGTAAATCCTCCCTGTCGATT	59.897	50.000	0.00	0.00	0.00	3.34
7025	9734	2.990066	AATCCTCCCTGTCGATTGAC	57.010	50.000	6.11	6.11	45.71	3.18
7119	9832	2.712539	CTCGTTGTGTTTGGCGCA	59.287	55.556	10.83	0.00	35.54	6.09
7122	9835	0.810426	TCGTTGTGTTTGGCGCAGTA	60.810	50.000	10.83	0.00	38.98	2.74
7144	9857	0.738762	GCAGATGCAACTGAGCTCGA	60.739	55.000	26.40	0.00	39.94	4.04
7194	9907	2.125269	CTGGAGGTTAACGCCGGG	60.125	66.667	2.18	0.00	42.78	5.73
7195	9908	2.604079	TGGAGGTTAACGCCGGGA	60.604	61.111	2.18	0.00	42.78	5.14
7239	9967	2.284405	GGAGGGGTTGGAGTCGGA	60.284	66.667	0.00	0.00	0.00	4.55
7284	10012	4.856115	ACATTTCAAACACAAAAAGGCG	57.144	36.364	0.00	0.00	0.00	5.52
7395	10138	1.678360	ACGGCTATTACGATTACGCG	58.322	50.000	3.53	3.53	43.96	6.01
7505	11735	5.982516	TGTGGTTGTTTGCATGTTTTATCTC	59.017	36.000	0.00	0.00	0.00	2.75
7534	11768	3.579232	GCGTAAATTCGGGCCGGG	61.579	66.667	27.98	7.87	0.00	5.73
7608	11850	2.739292	CCGTATTATCACGTCCTGGTG	58.261	52.381	0.00	0.00	40.31	4.17
7609	11851	2.100252	CCGTATTATCACGTCCTGGTGT	59.900	50.000	0.00	0.00	40.31	4.16
7636	11878	2.025898	TGTGAGTTACTGTGTCGTGGA	58.974	47.619	0.00	0.00	0.00	4.02
7637	11879	2.223641	TGTGAGTTACTGTGTCGTGGAC	60.224	50.000	0.00	0.00	0.00	4.02
7719	13346	4.387862	ACCGACAAGTAAATTACGCAAGAG	59.612	41.667	0.00	0.00	43.62	2.85
7787	13745	4.637483	ATATGGACATTTCGCACTTTGG	57.363	40.909	0.00	0.00	0.00	3.28
7790	13748	2.156098	GGACATTTCGCACTTTGGGTA	58.844	47.619	0.00	0.00	0.00	3.69
7910	14090	2.802247	AGGACCACTTAAAACGTTACGC	59.198	45.455	4.09	0.00	0.00	4.42
8026	15073	3.864243	ACGAACACTTTGTGAACTGGTA	58.136	40.909	4.61	0.00	36.96	3.25

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
182	196	2.028839	TCGCAAAGTAGTTGAATCCCGA	60.029	45.455	0.00	0.00	39.87	5.14
269	311	7.650104	GGAAAGTCACATCGGAAAATTTACAAA	59.350	33.333	0.00	0.00	0.00	2.83
270	312	7.013846	AGGAAAGTCACATCGGAAAATTTACAA	59.986	33.333	0.00	0.00	0.00	2.41
273	315	7.519032	AAGGAAAGTCACATCGGAAAATTTA	57.481	32.000	0.00	0.00	0.00	1.40
275	317	6.183360	ACAAAGGAAAGTCACATCGGAAAATT	60.183	34.615	0.00	0.00	0.00	1.82
276	318	5.301805	ACAAAGGAAAGTCACATCGGAAAAT	59.698	36.000	0.00	0.00	0.00	1.82
277	319	4.642885	ACAAAGGAAAGTCACATCGGAAAA	59.357	37.500	0.00	0.00	0.00	2.29
305	347	8.287350	AGACTTACTATGACCTTATCAACCCTA	58.713	37.037	0.00	0.00	41.93	3.53
397	439	6.317391	CCAGAAAGAATAGCCTACTCCAAAAG	59.683	42.308	0.00	0.00	0.00	2.27
466	839	0.319641	GTCCGTCTGTCCAGGTGTTC	60.320	60.000	0.00	0.00	0.00	3.18
470	843	2.989824	CCGTCCGTCTGTCCAGGT	60.990	66.667	0.00	0.00	0.00	4.00
519	909	1.947456	GTTTGAAGCCGGTTTGAGACT	59.053	47.619	8.82	0.00	0.00	3.24
578	968	3.519913	GGTCCTCCCCATATCCATCTTAC	59.480	52.174	0.00	0.00	0.00	2.34
581	971	1.553417	CGGTCCTCCCCATATCCATCT	60.553	57.143	0.00	0.00	0.00	2.90
678	1087	0.458025	GAGTGGCTAGGGTTTCGTCG	60.458	60.000	0.00	0.00	0.00	5.12
705	1114	2.372172	AGTGAGTTTGGACGAAAGGGAT	59.628	45.455	0.00	0.00	0.00	3.85
710	1119	1.539496	CGGGAGTGAGTTTGGACGAAA	60.539	52.381	0.00	0.00	0.00	3.46
789	1213	1.265454	GGATGAGGTCCCAGTTCGGT	61.265	60.000	0.00	0.00	41.50	4.69
790	1214	1.522569	GGATGAGGTCCCAGTTCGG	59.477	63.158	0.00	0.00	41.50	4.30
818	1242	0.395862	GACGACCATCTCCTCCCAGA	60.396	60.000	0.00	0.00	0.00	3.86
875	1299	4.385825	GCGGATTTATTCTGACCCATGTA	58.614	43.478	0.00	0.00	31.81	2.29
879	1303	1.474320	CGGCGGATTTATTCTGACCCA	60.474	52.381	0.00	0.00	34.97	4.51
890	1314	0.768622	TATGGATTCCCGGCGGATTT	59.231	50.000	30.79	11.20	38.24	2.17
972	1396	3.384789	TCGGATGCTAAATAGAGTGCACT	59.615	43.478	21.88	21.88	38.29	4.40
982	1406	2.951642	CCATGGTGTTCGGATGCTAAAT	59.048	45.455	2.57	0.00	0.00	1.40
984	1408	2.016604	GCCATGGTGTTCGGATGCTAA	61.017	52.381	14.67	0.00	0.00	3.09
1084	1514	1.676678	GCCCTCTACCTCGCATGACA	61.677	60.000	0.00	0.00	0.00	3.58
1140	1570	2.183046	GAGTGCGACTCTGCCTCC	59.817	66.667	8.50	0.00	41.88	4.30
1220	1650	1.152830	GTCTTGTTTGGGGAGGCCA	59.847	57.895	5.01	0.00	0.00	5.36
1230	1667	5.055642	TCGACGATGTATCTGTCTTGTTT	57.944	39.130	0.00	0.00	32.30	2.83
1321	1759	1.999071	GCTCATGAGACTCGAGGCGT	61.999	60.000	27.04	3.37	0.00	5.68
1368	1806	2.515523	GCTCCAGCCGCATGTGAT	60.516	61.111	8.11	0.00	34.31	3.06
1373	1811	0.107017	AAGTATTGCTCCAGCCGCAT	60.107	50.000	0.00	0.00	41.18	4.73
1374	1812	0.744414	GAAGTATTGCTCCAGCCGCA	60.744	55.000	0.00	0.00	41.18	5.69
1388	1826	4.143333	GCTGCGCCCCTCGAAGTA	62.143	66.667	4.18	0.00	45.76	2.24
1411	1849	4.388499	GTCGTGCCCATGTCCGGT	62.388	66.667	0.00	0.00	0.00	5.28
1540	1978	7.823745	AATAACCTTTGTGAGAACAGTGATT	57.176	32.000	0.00	0.00	0.00	2.57
1557	1995	6.040616	AGTGGTCGAATCGAATCTAATAACCT	59.959	38.462	7.01	0.00	37.72	3.50
1559	1997	6.345882	GCAGTGGTCGAATCGAATCTAATAAC	60.346	42.308	7.01	0.00	37.72	1.89
1561	1999	5.220381	GCAGTGGTCGAATCGAATCTAATA	58.780	41.667	7.01	0.00	37.72	0.98
1562	2000	4.051922	GCAGTGGTCGAATCGAATCTAAT	58.948	43.478	7.01	0.00	37.72	1.73
1563	2001	3.444916	GCAGTGGTCGAATCGAATCTAA	58.555	45.455	7.01	0.00	37.72	2.10
1564	2002	2.540973	CGCAGTGGTCGAATCGAATCTA	60.541	50.000	7.01	0.00	37.72	1.98
1565	2003	1.799181	CGCAGTGGTCGAATCGAATCT	60.799	52.381	7.01	3.34	37.72	2.40
1566	2004	0.572590	CGCAGTGGTCGAATCGAATC	59.427	55.000	7.01	3.53	37.72	2.52
1570	2008	3.902063	CGCGCAGTGGTCGAATCG	61.902	66.667	8.75	0.00	0.00	3.34
1625	2063	4.527816	TGCAAAGCTCCAGTTAATTCCAAT	59.472	37.500	0.00	0.00	0.00	3.16
1844	2282	3.120304	GGCTCCACTTACTTTTGCGTTAG	60.120	47.826	0.00	0.00	0.00	2.34
1919	2357	4.497300	TGGGTAGTACGCAAACAAGATAC	58.503	43.478	16.96	0.00	38.14	2.24
1972	2421	3.966979	AGTAATCATGGTGGCATGTCAA	58.033	40.909	0.00	0.00	34.39	3.18
2022	2482	4.445452	AATCAGATGTGACACAAATGCC	57.555	40.909	13.23	0.25	34.75	4.40
2032	2493	3.076621	GTGCCACTCAAATCAGATGTGA	58.923	45.455	3.08	3.08	37.02	3.58
2036	2497	2.885135	TGGTGCCACTCAAATCAGAT	57.115	45.000	0.00	0.00	0.00	2.90
2060	2521	0.741326	AGAGAGCGTACGTGCATGAT	59.259	50.000	17.90	0.00	37.31	2.45
2106	2567	5.622770	TCTTTTTCCTTACCTTCATTCGC	57.377	39.130	0.00	0.00	0.00	4.70
2110	2571	5.542635	GGGGTTTCTTTTTCCTTACCTTCAT	59.457	40.000	0.00	0.00	0.00	2.57
2201	2708	8.806146	TGAATTGATGCAGCTACTATAGATGTA	58.194	33.333	6.78	0.00	43.74	2.29
2273	2780	0.679960	ACCGGGCTTAAGCATTGGTC	60.680	55.000	27.83	9.95	44.36	4.02
2276	2783	2.549754	CTGATACCGGGCTTAAGCATTG	59.450	50.000	27.83	16.88	44.36	2.82
2384	2892	2.567985	GGGACGAAAGAAAACACCTGA	58.432	47.619	0.00	0.00	0.00	3.86
2426	2934	3.624777	GCCCATGAATTCTGGAGAGAAA	58.375	45.455	19.56	0.00	41.64	2.52
2738	3263	7.311408	GCCATTGAATCCTTAAATAGATCTGC	58.689	38.462	5.18	0.00	0.00	4.26
2941	3473	2.624838	ACTTCAAGGCACCTCAAACATG	59.375	45.455	0.00	0.00	0.00	3.21
3024	3556	9.778993	CTTGTGTCAGTTATTATCATTCAAAGG	57.221	33.333	0.00	0.00	0.00	3.11
3074	3606	2.302733	TGTATGAAGCAGCAGAAGTCCA	59.697	45.455	0.00	0.00	0.00	4.02
3093	3625	8.585471	AATTAATGATCCATGTGTTCTTCTGT	57.415	30.769	0.00	0.00	0.00	3.41
3094	3626	9.512435	GAAATTAATGATCCATGTGTTCTTCTG	57.488	33.333	0.00	0.00	0.00	3.02
3140	3673	3.324993	CCAACAACAAAACTGCTGTGTT	58.675	40.909	0.00	0.00	35.91	3.32
3141	3674	2.930455	GCCAACAACAAAACTGCTGTGT	60.930	45.455	0.00	0.00	0.00	3.72
3142	3675	1.660104	GCCAACAACAAAACTGCTGTG	59.340	47.619	0.00	0.00	0.00	3.66
3143	3676	1.274728	TGCCAACAACAAAACTGCTGT	59.725	42.857	0.00	0.00	0.00	4.40
3144	3677	2.007360	TGCCAACAACAAAACTGCTG	57.993	45.000	0.00	0.00	0.00	4.41
3145	3678	2.758736	TTGCCAACAACAAAACTGCT	57.241	40.000	0.00	0.00	0.00	4.24
3146	3679	5.236047	TGATATTTGCCAACAACAAAACTGC	59.764	36.000	0.00	0.00	40.19	4.40
3147	3680	6.841443	TGATATTTGCCAACAACAAAACTG	57.159	33.333	0.00	0.00	40.19	3.16
3148	3681	7.768120	TCTTTGATATTTGCCAACAACAAAACT	59.232	29.630	0.00	0.00	40.19	2.66
3149	3682	7.914465	TCTTTGATATTTGCCAACAACAAAAC	58.086	30.769	0.00	0.00	40.19	2.43
3150	3683	8.674263	ATCTTTGATATTTGCCAACAACAAAA	57.326	26.923	0.00	0.00	40.19	2.44
3151	3684	9.941325	ATATCTTTGATATTTGCCAACAACAAA	57.059	25.926	0.00	0.00	40.98	2.83
3152	3685	9.941325	AATATCTTTGATATTTGCCAACAACAA	57.059	25.926	6.91	0.00	34.87	2.83
3153	3686	9.585099	GAATATCTTTGATATTTGCCAACAACA	57.415	29.630	12.33	0.00	34.87	3.33
3154	3687	9.034544	GGAATATCTTTGATATTTGCCAACAAC	57.965	33.333	12.33	0.31	34.87	3.32
3155	3688	8.756927	TGGAATATCTTTGATATTTGCCAACAA	58.243	29.630	12.33	0.00	0.00	2.83
3156	3689	8.303780	TGGAATATCTTTGATATTTGCCAACA	57.696	30.769	12.33	5.24	0.00	3.33
3157	3690	9.768662	ATTGGAATATCTTTGATATTTGCCAAC	57.231	29.630	22.03	9.09	34.01	3.77
3180	3713	9.848172	CGAATCTACTTTGAAAAACCAAAATTG	57.152	29.630	0.00	0.00	35.83	2.32
3181	3714	8.547894	GCGAATCTACTTTGAAAAACCAAAATT	58.452	29.630	0.00	0.00	35.83	1.82
3182	3715	7.170828	GGCGAATCTACTTTGAAAAACCAAAAT	59.829	33.333	0.00	0.00	35.83	1.82
3183	3716	6.477360	GGCGAATCTACTTTGAAAAACCAAAA	59.523	34.615	0.00	0.00	35.83	2.44
3184	3717	5.980715	GGCGAATCTACTTTGAAAAACCAAA	59.019	36.000	0.00	0.00	35.09	3.28
3185	3718	5.067936	TGGCGAATCTACTTTGAAAAACCAA	59.932	36.000	0.00	0.00	0.00	3.67
3186	3719	4.580995	TGGCGAATCTACTTTGAAAAACCA	59.419	37.500	0.00	0.00	0.00	3.67
3187	3720	5.116069	TGGCGAATCTACTTTGAAAAACC	57.884	39.130	0.00	0.00	0.00	3.27
3188	3721	4.617223	GCTGGCGAATCTACTTTGAAAAAC	59.383	41.667	0.00	0.00	0.00	2.43
3189	3722	4.320935	GGCTGGCGAATCTACTTTGAAAAA	60.321	41.667	0.00	0.00	0.00	1.94
3190	3723	3.190535	GGCTGGCGAATCTACTTTGAAAA	59.809	43.478	0.00	0.00	0.00	2.29
3191	3724	2.747446	GGCTGGCGAATCTACTTTGAAA	59.253	45.455	0.00	0.00	0.00	2.69
3192	3725	2.356135	GGCTGGCGAATCTACTTTGAA	58.644	47.619	0.00	0.00	0.00	2.69
3193	3726	1.406887	GGGCTGGCGAATCTACTTTGA	60.407	52.381	0.00	0.00	0.00	2.69
3194	3727	1.017387	GGGCTGGCGAATCTACTTTG	58.983	55.000	0.00	0.00	0.00	2.77
3195	3728	0.618458	TGGGCTGGCGAATCTACTTT	59.382	50.000	0.00	0.00	0.00	2.66
3196	3729	0.179000	CTGGGCTGGCGAATCTACTT	59.821	55.000	0.00	0.00	0.00	2.24
3197	3730	0.687757	TCTGGGCTGGCGAATCTACT	60.688	55.000	0.00	0.00	0.00	2.57
3198	3731	0.394565	ATCTGGGCTGGCGAATCTAC	59.605	55.000	0.00	0.00	0.00	2.59
3199	3732	0.394192	CATCTGGGCTGGCGAATCTA	59.606	55.000	0.00	0.00	0.00	1.98
3200	3733	1.147824	CATCTGGGCTGGCGAATCT	59.852	57.895	0.00	0.00	0.00	2.40
3201	3734	1.153086	ACATCTGGGCTGGCGAATC	60.153	57.895	0.00	0.00	0.00	2.52
3202	3735	1.153086	GACATCTGGGCTGGCGAAT	60.153	57.895	0.00	0.00	0.00	3.34
3203	3736	1.913951	ATGACATCTGGGCTGGCGAA	61.914	55.000	0.00	0.00	0.00	4.70
3204	3737	1.913951	AATGACATCTGGGCTGGCGA	61.914	55.000	0.00	0.00	0.00	5.54
3205	3738	0.179048	TAATGACATCTGGGCTGGCG	60.179	55.000	0.00	0.00	0.00	5.69
3206	3739	1.312815	GTAATGACATCTGGGCTGGC	58.687	55.000	0.00	0.00	0.00	4.85
3207	3740	2.715749	TGTAATGACATCTGGGCTGG	57.284	50.000	0.00	0.00	0.00	4.85
3208	3741	5.047802	AGTTTTTGTAATGACATCTGGGCTG	60.048	40.000	0.00	0.00	34.86	4.85
3209	3742	5.079643	AGTTTTTGTAATGACATCTGGGCT	58.920	37.500	0.00	0.00	34.86	5.19
3210	3743	5.391312	AGTTTTTGTAATGACATCTGGGC	57.609	39.130	0.00	0.00	34.86	5.36
3232	3765	9.959721	GGGCTCTAGGTGATGATAAATTTATTA	57.040	33.333	11.92	8.51	0.00	0.98
3233	3766	8.448008	TGGGCTCTAGGTGATGATAAATTTATT	58.552	33.333	11.92	0.00	0.00	1.40
3234	3767	7.988937	TGGGCTCTAGGTGATGATAAATTTAT	58.011	34.615	10.51	10.51	0.00	1.40
3235	3768	7.387265	TGGGCTCTAGGTGATGATAAATTTA	57.613	36.000	0.00	0.00	0.00	1.40
3236	3769	6.266131	TGGGCTCTAGGTGATGATAAATTT	57.734	37.500	0.00	0.00	0.00	1.82
3237	3770	5.912149	TGGGCTCTAGGTGATGATAAATT	57.088	39.130	0.00	0.00	0.00	1.82
3238	3771	6.460103	AATGGGCTCTAGGTGATGATAAAT	57.540	37.500	0.00	0.00	0.00	1.40
3239	3772	5.912149	AATGGGCTCTAGGTGATGATAAA	57.088	39.130	0.00	0.00	0.00	1.40
3240	3773	5.912149	AAATGGGCTCTAGGTGATGATAA	57.088	39.130	0.00	0.00	0.00	1.75
3241	3774	5.912149	AAAATGGGCTCTAGGTGATGATA	57.088	39.130	0.00	0.00	0.00	2.15
3242	3775	4.803329	AAAATGGGCTCTAGGTGATGAT	57.197	40.909	0.00	0.00	0.00	2.45
3243	3776	5.456619	CCATAAAATGGGCTCTAGGTGATGA	60.457	44.000	0.00	0.00	46.86	2.92
3244	3777	4.763793	CCATAAAATGGGCTCTAGGTGATG	59.236	45.833	0.00	0.00	46.86	3.07
3245	3778	4.990526	CCATAAAATGGGCTCTAGGTGAT	58.009	43.478	0.00	0.00	46.86	3.06
3246	3779	4.437682	CCATAAAATGGGCTCTAGGTGA	57.562	45.455	0.00	0.00	46.86	4.02
3257	3790	6.477967	GGGTTCGGCCTTTCCATAAAATGG	62.478	50.000	0.00	0.00	43.92	3.16
3258	3791	3.430236	GGGTTCGGCCTTTCCATAAAATG	60.430	47.826	0.00	0.00	37.43	2.32
3259	3792	2.764010	GGGTTCGGCCTTTCCATAAAAT	59.236	45.455	0.00	0.00	37.43	1.82
3260	3793	2.172679	GGGTTCGGCCTTTCCATAAAA	58.827	47.619	0.00	0.00	37.43	1.52
3261	3794	1.617533	GGGGTTCGGCCTTTCCATAAA	60.618	52.381	0.00	0.00	37.43	1.40
3262	3795	0.033894	GGGGTTCGGCCTTTCCATAA	60.034	55.000	0.00	0.00	37.43	1.90
3263	3796	1.208844	TGGGGTTCGGCCTTTCCATA	61.209	55.000	0.00	0.00	37.43	2.74
3264	3797	2.359011	GGGGTTCGGCCTTTCCAT	59.641	61.111	0.00	0.00	37.43	3.41
3265	3798	3.179339	TGGGGTTCGGCCTTTCCA	61.179	61.111	0.00	0.00	37.43	3.53
3266	3799	2.211468	ATCTGGGGTTCGGCCTTTCC	62.211	60.000	0.00	0.00	37.43	3.13
3267	3800	0.544697	TATCTGGGGTTCGGCCTTTC	59.455	55.000	0.00	0.00	37.43	2.62
3268	3801	0.546598	CTATCTGGGGTTCGGCCTTT	59.453	55.000	0.00	0.00	37.43	3.11
3269	3802	1.345715	CCTATCTGGGGTTCGGCCTT	61.346	60.000	0.00	0.00	37.43	4.35
3270	3803	1.766461	CCTATCTGGGGTTCGGCCT	60.766	63.158	0.00	0.00	37.43	5.19
3271	3804	2.829592	CCTATCTGGGGTTCGGCC	59.170	66.667	0.00	0.00	0.00	6.13
3280	3813	1.774254	TGTTACATGGGCCCTATCTGG	59.226	52.381	25.70	8.31	0.00	3.86
3281	3814	2.487265	GGTGTTACATGGGCCCTATCTG	60.487	54.545	25.70	17.03	0.00	2.90
3282	3815	1.774856	GGTGTTACATGGGCCCTATCT	59.225	52.381	25.70	5.28	0.00	1.98
3283	3816	1.774856	AGGTGTTACATGGGCCCTATC	59.225	52.381	25.70	6.99	0.00	2.08
3284	3817	1.907240	AGGTGTTACATGGGCCCTAT	58.093	50.000	25.70	12.30	0.00	2.57
3285	3818	1.676248	AAGGTGTTACATGGGCCCTA	58.324	50.000	25.70	10.18	0.00	3.53
3286	3819	0.783850	AAAGGTGTTACATGGGCCCT	59.216	50.000	25.70	5.02	0.00	5.19
3287	3820	1.182667	GAAAGGTGTTACATGGGCCC	58.817	55.000	17.59	17.59	0.00	5.80
3288	3821	1.182667	GGAAAGGTGTTACATGGGCC	58.817	55.000	0.00	0.00	0.00	5.80
3289	3822	2.215942	AGGAAAGGTGTTACATGGGC	57.784	50.000	0.00	0.00	0.00	5.36
3290	3823	6.267496	CTTTTAGGAAAGGTGTTACATGGG	57.733	41.667	0.00	0.00	38.86	4.00
3302	3835	6.918067	AAAACTGGATCCCTTTTAGGAAAG	57.082	37.500	9.90	0.00	40.04	2.62
3303	3836	6.613679	ACAAAAACTGGATCCCTTTTAGGAAA	59.386	34.615	9.90	0.00	40.04	3.13
3304	3837	6.140377	ACAAAAACTGGATCCCTTTTAGGAA	58.860	36.000	9.90	0.00	40.04	3.36
3305	3838	5.711698	ACAAAAACTGGATCCCTTTTAGGA	58.288	37.500	9.90	0.00	37.67	2.94
3306	3839	6.419484	AACAAAAACTGGATCCCTTTTAGG	57.581	37.500	9.90	10.81	34.30	2.69
3307	3840	7.226523	CCAAAACAAAAACTGGATCCCTTTTAG	59.773	37.037	9.90	1.41	0.00	1.85
3308	3841	7.051000	CCAAAACAAAAACTGGATCCCTTTTA	58.949	34.615	9.90	0.00	0.00	1.52
3309	3842	5.885352	CCAAAACAAAAACTGGATCCCTTTT	59.115	36.000	9.90	10.10	0.00	2.27
3310	3843	5.436175	CCAAAACAAAAACTGGATCCCTTT	58.564	37.500	9.90	3.92	0.00	3.11
3311	3844	4.685848	GCCAAAACAAAAACTGGATCCCTT	60.686	41.667	9.90	0.00	0.00	3.95
3312	3845	3.181455	GCCAAAACAAAAACTGGATCCCT	60.181	43.478	9.90	0.00	0.00	4.20
3313	3846	3.138304	GCCAAAACAAAAACTGGATCCC	58.862	45.455	9.90	0.00	0.00	3.85
3314	3847	4.058124	GAGCCAAAACAAAAACTGGATCC	58.942	43.478	4.20	4.20	38.21	3.36
3315	3848	4.692228	TGAGCCAAAACAAAAACTGGATC	58.308	39.130	0.00	0.00	43.22	3.36
3316	3849	4.751767	TGAGCCAAAACAAAAACTGGAT	57.248	36.364	0.00	0.00	0.00	3.41
3317	3850	4.751767	ATGAGCCAAAACAAAAACTGGA	57.248	36.364	0.00	0.00	0.00	3.86
3318	3851	5.841810	TCTATGAGCCAAAACAAAAACTGG	58.158	37.500	0.00	0.00	0.00	4.00
3319	3852	7.202526	TCTTCTATGAGCCAAAACAAAAACTG	58.797	34.615	0.00	0.00	0.00	3.16
3320	3853	7.346751	TCTTCTATGAGCCAAAACAAAAACT	57.653	32.000	0.00	0.00	0.00	2.66
3321	3854	8.593492	AATCTTCTATGAGCCAAAACAAAAAC	57.407	30.769	0.00	0.00	0.00	2.43
3322	3855	9.912634	CTAATCTTCTATGAGCCAAAACAAAAA	57.087	29.630	0.00	0.00	0.00	1.94
3323	3856	9.295825	TCTAATCTTCTATGAGCCAAAACAAAA	57.704	29.630	0.00	0.00	0.00	2.44
3324	3857	8.862325	TCTAATCTTCTATGAGCCAAAACAAA	57.138	30.769	0.00	0.00	0.00	2.83
3325	3858	9.466497	AATCTAATCTTCTATGAGCCAAAACAA	57.534	29.630	0.00	0.00	0.00	2.83
3326	3859	9.466497	AAATCTAATCTTCTATGAGCCAAAACA	57.534	29.630	0.00	0.00	0.00	2.83
3327	3860	9.727627	CAAATCTAATCTTCTATGAGCCAAAAC	57.272	33.333	0.00	0.00	0.00	2.43
3328	3861	8.408601	GCAAATCTAATCTTCTATGAGCCAAAA	58.591	33.333	0.00	0.00	0.00	2.44
3329	3862	7.557358	TGCAAATCTAATCTTCTATGAGCCAAA	59.443	33.333	0.00	0.00	0.00	3.28
3330	3863	7.056006	TGCAAATCTAATCTTCTATGAGCCAA	58.944	34.615	0.00	0.00	0.00	4.52
3331	3864	6.594744	TGCAAATCTAATCTTCTATGAGCCA	58.405	36.000	0.00	0.00	0.00	4.75
3332	3865	7.228308	ACTTGCAAATCTAATCTTCTATGAGCC	59.772	37.037	0.00	0.00	0.00	4.70
3333	3866	8.068977	CACTTGCAAATCTAATCTTCTATGAGC	58.931	37.037	0.00	0.00	0.00	4.26
3334	3867	9.107177	ACACTTGCAAATCTAATCTTCTATGAG	57.893	33.333	0.00	0.00	0.00	2.90
3335	3868	9.453572	AACACTTGCAAATCTAATCTTCTATGA	57.546	29.630	0.00	0.00	0.00	2.15
3347	3880	9.840427	GTGTGTAAATATAACACTTGCAAATCT	57.160	29.630	17.49	0.00	45.95	2.40
3357	3890	7.898309	CGAAGCAGAAGTGTGTAAATATAACAC	59.102	37.037	12.26	12.26	45.96	3.32
3358	3891	7.959733	CGAAGCAGAAGTGTGTAAATATAACA	58.040	34.615	0.00	0.00	0.00	2.41
3385	3918	1.740296	CAGCGTGAGTTTACGGGGG	60.740	63.158	0.00	0.00	43.87	5.40
3386	3919	2.388232	GCAGCGTGAGTTTACGGGG	61.388	63.158	0.00	0.00	43.87	5.73
3387	3920	2.388232	GGCAGCGTGAGTTTACGGG	61.388	63.158	0.00	0.00	43.87	5.28
3388	3921	1.374252	AGGCAGCGTGAGTTTACGG	60.374	57.895	0.00	0.00	43.87	4.02
3389	3922	0.666274	TCAGGCAGCGTGAGTTTACG	60.666	55.000	13.86	0.00	46.28	3.18
3390	3923	1.726853	ATCAGGCAGCGTGAGTTTAC	58.273	50.000	21.65	0.00	31.81	2.01
3391	3924	2.734175	CGTATCAGGCAGCGTGAGTTTA	60.734	50.000	21.65	8.15	31.81	2.01
3392	3925	1.726853	GTATCAGGCAGCGTGAGTTT	58.273	50.000	21.65	9.09	31.81	2.66
3393	3926	0.458543	CGTATCAGGCAGCGTGAGTT	60.459	55.000	21.65	9.77	31.81	3.01
3394	3927	1.139734	CGTATCAGGCAGCGTGAGT	59.860	57.895	21.65	12.79	31.81	3.41
3395	3928	2.233654	GCGTATCAGGCAGCGTGAG	61.234	63.158	21.65	10.54	31.81	3.51
3396	3929	2.202743	GCGTATCAGGCAGCGTGA	60.203	61.111	19.71	19.71	32.83	4.35
3397	3930	2.509111	TGCGTATCAGGCAGCGTG	60.509	61.111	8.91	8.91	33.67	5.34
3398	3931	2.509336	GTGCGTATCAGGCAGCGT	60.509	61.111	0.00	0.00	39.87	5.07
3399	3932	3.264897	GGTGCGTATCAGGCAGCG	61.265	66.667	7.20	0.00	45.34	5.18
3401	3934	1.522355	CAGGGTGCGTATCAGGCAG	60.522	63.158	0.00	0.00	39.87	4.85
3402	3935	2.290287	ACAGGGTGCGTATCAGGCA	61.290	57.895	0.00	0.00	36.56	4.75
3403	3936	1.815421	CACAGGGTGCGTATCAGGC	60.815	63.158	0.00	0.00	0.00	4.85
3404	3937	0.821517	TACACAGGGTGCGTATCAGG	59.178	55.000	0.00	0.00	36.98	3.86
3405	3938	1.922570	GTACACAGGGTGCGTATCAG	58.077	55.000	0.00	0.00	36.98	2.90
3412	3945	4.584688	GGTACGTACACAGGGTGC	57.415	61.111	26.02	3.46	36.98	5.01
3458	3991	9.823647	TGGCACACATTTCTTAAAGATTAAAAA	57.176	25.926	0.00	0.00	0.00	1.94
3481	4014	3.861263	GTTCGAATCGCCCGTGGC	61.861	66.667	0.00	4.96	46.75	5.01
3482	4015	2.125673	AGTTCGAATCGCCCGTGG	60.126	61.111	0.00	0.00	0.00	4.94
3483	4016	2.165301	GGAGTTCGAATCGCCCGTG	61.165	63.158	0.00	0.00	0.00	4.94
3484	4017	2.162338	TTGGAGTTCGAATCGCCCGT	62.162	55.000	0.00	0.00	0.00	5.28
3485	4018	1.447140	TTGGAGTTCGAATCGCCCG	60.447	57.895	0.00	0.00	0.00	6.13
3486	4019	1.366854	GGTTGGAGTTCGAATCGCCC	61.367	60.000	0.00	1.18	0.00	6.13
3487	4020	1.366854	GGGTTGGAGTTCGAATCGCC	61.367	60.000	0.00	7.31	0.00	5.54
3488	4021	0.391263	AGGGTTGGAGTTCGAATCGC	60.391	55.000	0.00	0.00	0.00	4.58
3489	4022	1.067142	TGAGGGTTGGAGTTCGAATCG	60.067	52.381	0.00	0.00	0.00	3.34
3508	4041	7.117956	GGTTACTAGAAGCTGAAGTAAACCTTG	59.882	40.741	15.40	0.00	37.41	3.61
3522	4055	5.761165	TTTGTTGGTTGGTTACTAGAAGC	57.239	39.130	0.00	0.00	0.00	3.86
3540	4073	7.223777	GTGTGCATAACAAATAACCTGTTTTGT	59.776	33.333	0.00	0.00	45.39	2.83
3563	4096	4.816925	AGAAGCGAAAAAGAAAGCTAGTGT	59.183	37.500	0.00	0.00	39.25	3.55
3798	4349	9.657419	AAGAAATGTTCACAGACTTGAAATTTT	57.343	25.926	0.00	5.65	37.24	1.82
3801	4352	7.999679	TGAAGAAATGTTCACAGACTTGAAAT	58.000	30.769	0.00	0.00	37.24	2.17
3804	4355	7.389803	TTTGAAGAAATGTTCACAGACTTGA	57.610	32.000	0.00	0.00	36.15	3.02
4076	4645	0.320421	GTGCGAGACTAGGCCAAACA	60.320	55.000	5.01	0.00	0.00	2.83
4135	4706	2.562738	GCTTATGCAAGAAGTTGGGGTT	59.437	45.455	12.00	0.00	39.41	4.11
4152	4724	1.128200	ATATGTCCGTGCCTGGCTTA	58.872	50.000	21.03	0.00	0.00	3.09
4158	4730	1.337384	TGCCTCATATGTCCGTGCCT	61.337	55.000	1.90	0.00	0.00	4.75
4184	4756	2.546789	GTCGAAACTCATTCAAACCCGT	59.453	45.455	0.00	0.00	37.96	5.28
4186	4758	3.304458	GGTGTCGAAACTCATTCAAACCC	60.304	47.826	5.55	0.00	37.96	4.11
4198	4770	0.922111	CGTGCAAACGGTGTCGAAAC	60.922	55.000	0.00	0.00	40.11	2.78
4304	6624	2.821378	TGTGACCAATTCAAGGCATCAG	59.179	45.455	0.00	0.00	35.39	2.90
4340	6661	2.909006	TGCTTCAAATGGCCCCAATTTA	59.091	40.909	0.00	0.00	0.00	1.40
4487	6821	0.327924	TTCGAACCTGGCATGGATGT	59.672	50.000	9.53	0.00	0.00	3.06
4593	6927	7.793927	TTGTTGGTTTTTGTTTCTTGTTTCT	57.206	28.000	0.00	0.00	0.00	2.52
4594	6928	8.842942	TTTTGTTGGTTTTTGTTTCTTGTTTC	57.157	26.923	0.00	0.00	0.00	2.78
4597	6931	8.159344	TCATTTTGTTGGTTTTTGTTTCTTGT	57.841	26.923	0.00	0.00	0.00	3.16
4652	6986	4.510340	GCGAACTGGTCTTTTTCTCACTAA	59.490	41.667	0.00	0.00	0.00	2.24
4669	7003	3.256558	GACCGGTTTATTGTAGCGAACT	58.743	45.455	9.42	0.00	38.68	3.01
4680	7014	1.946984	TCCCTCAGTGACCGGTTTAT	58.053	50.000	9.42	0.00	0.00	1.40
4750	7085	0.312416	AACGCTCATCGCTAGCTAGG	59.688	55.000	22.10	12.16	43.23	3.02
4762	7097	0.037326	CTCCCACTGCTAAACGCTCA	60.037	55.000	0.00	0.00	40.11	4.26
4768	7103	1.280998	GCCCTAACTCCCACTGCTAAA	59.719	52.381	0.00	0.00	0.00	1.85
4770	7105	0.252513	TGCCCTAACTCCCACTGCTA	60.253	55.000	0.00	0.00	0.00	3.49
4787	7122	2.842256	CGCTGGGCATTGGAGATGC	61.842	63.158	2.50	2.50	43.85	3.91
4788	7123	2.842256	GCGCTGGGCATTGGAGATG	61.842	63.158	12.19	0.00	42.87	2.90
4789	7124	2.517875	GCGCTGGGCATTGGAGAT	60.518	61.111	12.19	0.00	42.87	2.75
4798	7133	3.512516	CCTGCTTTAGCGCTGGGC	61.513	66.667	22.90	20.59	45.83	5.36
4800	7135	3.512516	GCCCTGCTTTAGCGCTGG	61.513	66.667	22.90	12.12	45.83	4.85
4801	7136	3.869272	CGCCCTGCTTTAGCGCTG	61.869	66.667	22.90	4.11	43.72	5.18
4811	7146	0.464554	AATCTTTCCTAGCGCCCTGC	60.465	55.000	2.29	0.00	46.98	4.85
4812	7147	1.943340	GAAATCTTTCCTAGCGCCCTG	59.057	52.381	2.29	0.00	0.00	4.45
4813	7148	2.333688	GAAATCTTTCCTAGCGCCCT	57.666	50.000	2.29	0.00	0.00	5.19
4823	7158	0.173481	GCTTGGCCGGGAAATCTTTC	59.827	55.000	2.18	0.00	36.46	2.62
4824	7159	1.595093	CGCTTGGCCGGGAAATCTTT	61.595	55.000	2.18	0.00	0.00	2.52
4825	7160	2.046285	CGCTTGGCCGGGAAATCTT	61.046	57.895	2.18	0.00	0.00	2.40
4826	7161	2.438434	CGCTTGGCCGGGAAATCT	60.438	61.111	2.18	0.00	0.00	2.40
4827	7162	2.437716	TCGCTTGGCCGGGAAATC	60.438	61.111	2.18	0.00	0.00	2.17
4828	7163	2.750237	GTCGCTTGGCCGGGAAAT	60.750	61.111	2.18	0.00	0.00	2.17
4833	7168	4.745751	TAACCGTCGCTTGGCCGG	62.746	66.667	0.00	0.00	46.93	6.13
4834	7169	3.484547	GTAACCGTCGCTTGGCCG	61.485	66.667	0.00	0.00	0.00	6.13
4835	7170	1.702491	GATGTAACCGTCGCTTGGCC	61.702	60.000	0.00	0.00	0.00	5.36
4836	7171	1.017177	TGATGTAACCGTCGCTTGGC	61.017	55.000	0.00	0.00	0.00	4.52
4837	7172	1.327460	CATGATGTAACCGTCGCTTGG	59.673	52.381	0.00	0.00	0.00	3.61
4838	7173	1.327460	CCATGATGTAACCGTCGCTTG	59.673	52.381	0.00	0.00	0.00	4.01
4839	7174	1.206132	TCCATGATGTAACCGTCGCTT	59.794	47.619	0.00	0.00	0.00	4.68
4840	7175	0.821517	TCCATGATGTAACCGTCGCT	59.178	50.000	0.00	0.00	0.00	4.93
4841	7176	1.865865	ATCCATGATGTAACCGTCGC	58.134	50.000	0.00	0.00	0.00	5.19
4842	7177	2.800544	GGAATCCATGATGTAACCGTCG	59.199	50.000	0.00	0.00	0.00	5.12
4843	7178	3.139077	GGGAATCCATGATGTAACCGTC	58.861	50.000	0.09	0.00	0.00	4.79
4844	7179	2.507886	TGGGAATCCATGATGTAACCGT	59.492	45.455	0.09	0.00	38.32	4.83
4845	7180	3.141398	CTGGGAATCCATGATGTAACCG	58.859	50.000	0.09	0.00	43.11	4.44
4846	7181	2.887152	GCTGGGAATCCATGATGTAACC	59.113	50.000	0.09	0.00	43.11	2.85
4847	7182	3.554934	TGCTGGGAATCCATGATGTAAC	58.445	45.455	0.09	0.00	43.11	2.50
4848	7183	3.949586	TGCTGGGAATCCATGATGTAA	57.050	42.857	0.09	0.00	43.11	2.41
4849	7184	3.557686	CGATGCTGGGAATCCATGATGTA	60.558	47.826	0.09	0.00	43.11	2.29
4850	7185	2.812983	CGATGCTGGGAATCCATGATGT	60.813	50.000	0.09	0.00	43.11	3.06
4851	7186	1.810755	CGATGCTGGGAATCCATGATG	59.189	52.381	0.09	0.00	43.11	3.07
4852	7187	1.271762	CCGATGCTGGGAATCCATGAT	60.272	52.381	0.09	0.00	43.11	2.45
4853	7188	0.109153	CCGATGCTGGGAATCCATGA	59.891	55.000	0.09	0.00	43.11	3.07
4854	7189	2.637521	CCGATGCTGGGAATCCATG	58.362	57.895	0.09	0.00	43.11	3.66
4865	7200	4.575973	GATGCCAGCCCCGATGCT	62.576	66.667	0.00	0.00	44.00	3.79
4867	7202	3.541950	ATCGATGCCAGCCCCGATG	62.542	63.158	13.11	0.00	39.84	3.84
4868	7203	3.244580	ATCGATGCCAGCCCCGAT	61.245	61.111	0.00	9.49	36.99	4.18
4869	7204	4.240103	CATCGATGCCAGCCCCGA	62.240	66.667	13.37	6.05	35.43	5.14
4879	7214	4.152223	TCGCTGTTATATTTGGCATCGATG	59.848	41.667	21.27	21.27	0.00	3.84
4880	7215	4.314961	TCGCTGTTATATTTGGCATCGAT	58.685	39.130	0.00	0.00	0.00	3.59
4881	7216	3.723260	TCGCTGTTATATTTGGCATCGA	58.277	40.909	0.00	0.00	0.00	3.59
4882	7217	3.665323	GCTCGCTGTTATATTTGGCATCG	60.665	47.826	0.00	0.00	0.00	3.84
4883	7218	3.665323	CGCTCGCTGTTATATTTGGCATC	60.665	47.826	0.00	0.00	0.00	3.91
4884	7219	2.224079	CGCTCGCTGTTATATTTGGCAT	59.776	45.455	0.00	0.00	0.00	4.40
4885	7220	1.597195	CGCTCGCTGTTATATTTGGCA	59.403	47.619	0.00	0.00	0.00	4.92
4886	7221	1.660333	GCGCTCGCTGTTATATTTGGC	60.660	52.381	0.00	0.00	38.26	4.52
4887	7222	2.300623	GCGCTCGCTGTTATATTTGG	57.699	50.000	0.00	0.00	38.26	3.28
4905	7240	2.840974	TGCGGAGAAAGCACTAAGC	58.159	52.632	0.00	0.00	46.19	3.09
4911	7246	1.148273	ACCTTGTGCGGAGAAAGCA	59.852	52.632	0.00	0.00	42.99	3.91
4912	7247	0.884704	TCACCTTGTGCGGAGAAAGC	60.885	55.000	0.00	0.00	32.98	3.51
4913	7248	1.151668	CTCACCTTGTGCGGAGAAAG	58.848	55.000	0.00	0.00	32.98	2.62
4914	7249	0.250295	CCTCACCTTGTGCGGAGAAA	60.250	55.000	0.00	0.00	40.46	2.52
4915	7250	1.371183	CCTCACCTTGTGCGGAGAA	59.629	57.895	0.00	0.00	40.46	2.87
4916	7251	3.059982	CCTCACCTTGTGCGGAGA	58.940	61.111	0.00	0.00	40.46	3.71
4917	7252	2.743928	GCCTCACCTTGTGCGGAG	60.744	66.667	7.40	0.00	40.46	4.63
4918	7253	3.535629	CTGCCTCACCTTGTGCGGA	62.536	63.158	7.40	0.00	40.46	5.54
4919	7254	3.052082	CTGCCTCACCTTGTGCGG	61.052	66.667	0.00	0.00	40.91	5.69
4920	7255	1.165907	TTTCTGCCTCACCTTGTGCG	61.166	55.000	0.00	0.00	32.98	5.34
4921	7256	1.200948	GATTTCTGCCTCACCTTGTGC	59.799	52.381	0.00	0.00	32.98	4.57
4922	7257	1.466167	CGATTTCTGCCTCACCTTGTG	59.534	52.381	0.00	0.00	34.45	3.33
4923	7258	1.072331	ACGATTTCTGCCTCACCTTGT	59.928	47.619	0.00	0.00	0.00	3.16
4924	7259	1.466167	CACGATTTCTGCCTCACCTTG	59.534	52.381	0.00	0.00	0.00	3.61
4925	7260	1.072331	ACACGATTTCTGCCTCACCTT	59.928	47.619	0.00	0.00	0.00	3.50
4926	7261	0.687354	ACACGATTTCTGCCTCACCT	59.313	50.000	0.00	0.00	0.00	4.00
4927	7262	1.464997	GAACACGATTTCTGCCTCACC	59.535	52.381	0.00	0.00	0.00	4.02
4928	7263	1.464997	GGAACACGATTTCTGCCTCAC	59.535	52.381	0.00	0.00	0.00	3.51
4929	7264	1.347707	AGGAACACGATTTCTGCCTCA	59.652	47.619	0.00	0.00	0.00	3.86
4930	7265	1.734465	CAGGAACACGATTTCTGCCTC	59.266	52.381	0.00	0.00	0.00	4.70
4931	7266	1.347707	TCAGGAACACGATTTCTGCCT	59.652	47.619	7.39	0.00	0.00	4.75
4932	7267	1.734465	CTCAGGAACACGATTTCTGCC	59.266	52.381	7.39	0.00	0.00	4.85
4933	7268	1.129437	GCTCAGGAACACGATTTCTGC	59.871	52.381	7.39	0.00	0.00	4.26
4934	7269	1.734465	GGCTCAGGAACACGATTTCTG	59.266	52.381	6.23	6.23	0.00	3.02
4935	7270	1.673033	CGGCTCAGGAACACGATTTCT	60.673	52.381	0.00	0.00	0.00	2.52
4936	7271	0.721718	CGGCTCAGGAACACGATTTC	59.278	55.000	0.00	0.00	0.00	2.17
4937	7272	0.034896	ACGGCTCAGGAACACGATTT	59.965	50.000	0.00	0.00	0.00	2.17
4938	7273	0.892755	TACGGCTCAGGAACACGATT	59.107	50.000	0.00	0.00	0.00	3.34
4939	7274	1.112113	ATACGGCTCAGGAACACGAT	58.888	50.000	0.00	0.00	0.00	3.73
4940	7275	0.892755	AATACGGCTCAGGAACACGA	59.107	50.000	0.00	0.00	0.00	4.35
4941	7276	2.572191	TAATACGGCTCAGGAACACG	57.428	50.000	0.00	0.00	0.00	4.49
4942	7277	2.608090	GCTTAATACGGCTCAGGAACAC	59.392	50.000	0.00	0.00	0.00	3.32
4943	7278	2.737359	CGCTTAATACGGCTCAGGAACA	60.737	50.000	0.00	0.00	0.00	3.18
4944	7279	1.859080	CGCTTAATACGGCTCAGGAAC	59.141	52.381	0.00	0.00	0.00	3.62
4945	7280	1.479323	ACGCTTAATACGGCTCAGGAA	59.521	47.619	3.47	0.00	34.00	3.36
4946	7281	1.108776	ACGCTTAATACGGCTCAGGA	58.891	50.000	3.47	0.00	34.00	3.86
4947	7282	1.593006	CAACGCTTAATACGGCTCAGG	59.407	52.381	3.47	0.00	34.00	3.86
4948	7283	1.593006	CCAACGCTTAATACGGCTCAG	59.407	52.381	3.47	0.00	34.00	3.35
4949	7284	1.066716	ACCAACGCTTAATACGGCTCA	60.067	47.619	3.47	0.00	34.00	4.26
4950	7285	1.648504	ACCAACGCTTAATACGGCTC	58.351	50.000	3.47	0.00	34.00	4.70
4951	7286	2.167075	AGTACCAACGCTTAATACGGCT	59.833	45.455	3.47	0.00	34.00	5.52
4952	7287	2.543641	AGTACCAACGCTTAATACGGC	58.456	47.619	3.47	0.00	34.00	5.68
4953	7288	4.207841	GCTAAGTACCAACGCTTAATACGG	59.792	45.833	3.47	0.00	34.00	4.02
4954	7289	4.085924	CGCTAAGTACCAACGCTTAATACG	60.086	45.833	0.00	0.00	0.00	3.06
4955	7290	4.317628	GCGCTAAGTACCAACGCTTAATAC	60.318	45.833	0.00	0.00	45.71	1.89
4956	7291	3.798337	GCGCTAAGTACCAACGCTTAATA	59.202	43.478	0.00	0.00	45.71	0.98
4957	7292	2.606272	GCGCTAAGTACCAACGCTTAAT	59.394	45.455	0.00	0.00	45.71	1.40
4958	7293	1.994779	GCGCTAAGTACCAACGCTTAA	59.005	47.619	0.00	0.00	45.71	1.85
4959	7294	1.632422	GCGCTAAGTACCAACGCTTA	58.368	50.000	0.00	0.00	45.71	3.09
4960	7295	2.452767	GCGCTAAGTACCAACGCTT	58.547	52.632	0.00	0.00	45.71	4.68
4961	7296	4.180496	GCGCTAAGTACCAACGCT	57.820	55.556	0.00	0.00	45.71	5.07
4963	7298	0.719465	CAAGGCGCTAAGTACCAACG	59.281	55.000	7.64	0.00	0.00	4.10
4964	7299	0.446616	GCAAGGCGCTAAGTACCAAC	59.553	55.000	7.64	0.00	37.77	3.77
4965	7300	2.849081	GCAAGGCGCTAAGTACCAA	58.151	52.632	7.64	0.00	37.77	3.67
4966	7301	4.609995	GCAAGGCGCTAAGTACCA	57.390	55.556	7.64	0.00	37.77	3.25
4977	7312	1.519408	TAACTCTTCCAACGCAAGGC	58.481	50.000	0.00	0.00	46.39	4.35
4978	7313	2.096417	CGTTAACTCTTCCAACGCAAGG	60.096	50.000	3.71	0.00	46.39	3.61
4979	7314	3.169207	CGTTAACTCTTCCAACGCAAG	57.831	47.619	3.71	0.00	38.63	4.01
4983	7318	5.231568	CCTATAAGCGTTAACTCTTCCAACG	59.768	44.000	13.87	1.97	45.83	4.10
4984	7319	5.006455	GCCTATAAGCGTTAACTCTTCCAAC	59.994	44.000	13.87	0.00	0.00	3.77
4985	7320	5.114081	GCCTATAAGCGTTAACTCTTCCAA	58.886	41.667	13.87	0.00	0.00	3.53
4986	7321	4.442472	GGCCTATAAGCGTTAACTCTTCCA	60.442	45.833	13.87	0.00	0.00	3.53
4987	7322	4.056740	GGCCTATAAGCGTTAACTCTTCC	58.943	47.826	13.87	5.80	0.00	3.46
4988	7323	4.946445	AGGCCTATAAGCGTTAACTCTTC	58.054	43.478	13.87	0.42	0.00	2.87
4989	7324	5.354842	AAGGCCTATAAGCGTTAACTCTT	57.645	39.130	5.16	14.77	38.96	2.85
4990	7325	5.354842	AAAGGCCTATAAGCGTTAACTCT	57.645	39.130	5.16	0.00	39.78	3.24
4991	7326	7.725818	ATAAAAGGCCTATAAGCGTTAACTC	57.274	36.000	5.16	0.00	39.78	3.01
4992	7327	9.617523	TTTATAAAAGGCCTATAAGCGTTAACT	57.382	29.630	5.16	0.00	39.78	2.24
4997	7332	9.961265	GAAAATTTATAAAAGGCCTATAAGCGT	57.039	29.630	5.16	0.00	0.00	5.07
5033	7368	3.886505	TCCAGGCGCTTAGAAAAGAAAAA	59.113	39.130	7.64	0.00	34.37	1.94
5034	7369	3.482436	TCCAGGCGCTTAGAAAAGAAAA	58.518	40.909	7.64	0.00	34.37	2.29
5035	7370	3.134574	TCCAGGCGCTTAGAAAAGAAA	57.865	42.857	7.64	0.00	34.37	2.52
5036	7371	2.851263	TCCAGGCGCTTAGAAAAGAA	57.149	45.000	7.64	0.00	34.37	2.52
5037	7372	4.442706	CTTATCCAGGCGCTTAGAAAAGA	58.557	43.478	7.64	0.00	34.37	2.52
5038	7373	3.002759	GCTTATCCAGGCGCTTAGAAAAG	59.997	47.826	7.64	6.52	35.68	2.27
5039	7374	2.943033	GCTTATCCAGGCGCTTAGAAAA	59.057	45.455	7.64	0.00	0.00	2.29
5040	7375	2.561569	GCTTATCCAGGCGCTTAGAAA	58.438	47.619	7.64	0.00	0.00	2.52
5041	7376	1.538204	CGCTTATCCAGGCGCTTAGAA	60.538	52.381	7.64	0.00	44.64	2.10
5042	7377	0.032130	CGCTTATCCAGGCGCTTAGA	59.968	55.000	7.64	0.00	44.64	2.10
5043	7378	2.522060	CGCTTATCCAGGCGCTTAG	58.478	57.895	7.64	0.00	44.64	2.18
5044	7379	4.750460	CGCTTATCCAGGCGCTTA	57.250	55.556	7.64	0.00	44.64	3.09
5049	7384	0.179056	TGGTAAGCGCTTATCCAGGC	60.179	55.000	31.93	18.64	0.00	4.85
5050	7385	2.549754	CAATGGTAAGCGCTTATCCAGG	59.450	50.000	33.96	28.26	33.27	4.45
5051	7386	2.549754	CCAATGGTAAGCGCTTATCCAG	59.450	50.000	33.96	26.75	33.27	3.86
5052	7387	2.171659	TCCAATGGTAAGCGCTTATCCA	59.828	45.455	33.59	33.59	33.82	3.41
5053	7388	2.548480	GTCCAATGGTAAGCGCTTATCC	59.452	50.000	31.93	29.53	0.00	2.59
5054	7389	3.202906	TGTCCAATGGTAAGCGCTTATC	58.797	45.455	30.90	30.15	0.00	1.75
5055	7390	3.275617	TGTCCAATGGTAAGCGCTTAT	57.724	42.857	30.90	15.30	0.00	1.73
5056	7391	2.772077	TGTCCAATGGTAAGCGCTTA	57.228	45.000	25.53	25.53	0.00	3.09
5057	7392	1.745087	CATGTCCAATGGTAAGCGCTT	59.255	47.619	27.97	27.97	0.00	4.68
5058	7393	1.382522	CATGTCCAATGGTAAGCGCT	58.617	50.000	2.64	2.64	0.00	5.92
5059	7394	0.248621	GCATGTCCAATGGTAAGCGC	60.249	55.000	0.00	0.00	0.00	5.92
5060	7395	0.381801	GGCATGTCCAATGGTAAGCG	59.618	55.000	0.00	0.00	34.01	4.68
5061	7396	0.746659	GGGCATGTCCAATGGTAAGC	59.253	55.000	12.68	0.00	36.21	3.09
5062	7397	2.442236	AGGGCATGTCCAATGGTAAG	57.558	50.000	20.74	0.00	36.21	2.34
5063	7398	2.917713	AAGGGCATGTCCAATGGTAA	57.082	45.000	20.74	0.00	36.21	2.85
5064	7399	2.578480	TGTAAGGGCATGTCCAATGGTA	59.422	45.455	20.74	0.00	36.21	3.25
5065	7400	1.357420	TGTAAGGGCATGTCCAATGGT	59.643	47.619	20.74	0.00	36.21	3.55
5066	7401	2.026641	CTGTAAGGGCATGTCCAATGG	58.973	52.381	20.74	0.00	36.21	3.16
5091	7426	0.620556	ATGGTTTGTGCGAGGGATCT	59.379	50.000	0.00	0.00	0.00	2.75
5196	7533	2.167693	GACATATCAGTGACCCCGTCAA	59.832	50.000	0.00	0.00	44.49	3.18
5197	7534	1.754803	GACATATCAGTGACCCCGTCA	59.245	52.381	0.00	0.00	40.50	4.35
5198	7535	2.032620	AGACATATCAGTGACCCCGTC	58.967	52.381	0.00	0.26	0.00	4.79
5199	7536	2.032620	GAGACATATCAGTGACCCCGT	58.967	52.381	0.00	0.00	0.00	5.28
5200	7537	1.001268	CGAGACATATCAGTGACCCCG	60.001	57.143	0.00	0.00	0.00	5.73
5201	7538	1.269831	GCGAGACATATCAGTGACCCC	60.270	57.143	0.00	0.00	0.00	4.95
5202	7539	1.269831	GGCGAGACATATCAGTGACCC	60.270	57.143	0.00	0.00	0.00	4.46
5203	7540	1.683917	AGGCGAGACATATCAGTGACC	59.316	52.381	0.00	0.00	0.00	4.02
5204	7541	3.315470	TGTAGGCGAGACATATCAGTGAC	59.685	47.826	0.00	0.00	0.00	3.67
5205	7542	3.551846	TGTAGGCGAGACATATCAGTGA	58.448	45.455	0.00	0.00	0.00	3.41
5206	7543	3.855154	GCTGTAGGCGAGACATATCAGTG	60.855	52.174	0.00	0.00	0.00	3.66
5207	7544	2.294791	GCTGTAGGCGAGACATATCAGT	59.705	50.000	0.00	0.00	0.00	3.41
5208	7545	2.940147	GCTGTAGGCGAGACATATCAG	58.060	52.381	0.00	0.00	0.00	2.90
5246	7590	3.758755	ATATGGAGCTCGAATTCAGCA	57.241	42.857	23.08	10.07	39.56	4.41
5253	7597	1.068588	CGACCCAATATGGAGCTCGAA	59.931	52.381	7.83	0.00	40.96	3.71
5254	7598	0.673985	CGACCCAATATGGAGCTCGA	59.326	55.000	7.83	3.70	40.96	4.04
5983	8368	7.071321	TCTCTCTCTAGGGTTTCACTTTTTCTT	59.929	37.037	0.00	0.00	0.00	2.52
6000	8385	9.224267	CTTGTTTTCATCCATTTTCTCTCTCTA	57.776	33.333	0.00	0.00	0.00	2.43
6023	8408	6.793492	TTGGTTTTGTTGGTTTCTTTCTTG	57.207	33.333	0.00	0.00	0.00	3.02
6073	8459	7.600752	TCTTTGTTTCTTTCACGGTTTTCATTT	59.399	29.630	0.00	0.00	0.00	2.32
6085	8471	7.902087	TCCTTTCCTTTTCTTTGTTTCTTTCA	58.098	30.769	0.00	0.00	0.00	2.69
6253	8649	3.186613	CCTAGTTCTCGGCTTTTTGTGAC	59.813	47.826	0.00	0.00	0.00	3.67
6258	8654	1.982958	TCCCCTAGTTCTCGGCTTTTT	59.017	47.619	0.00	0.00	0.00	1.94
6259	8655	1.278413	GTCCCCTAGTTCTCGGCTTTT	59.722	52.381	0.00	0.00	0.00	2.27
6276	8672	1.530891	TGGGATCGATCTCGGGTCC	60.531	63.158	23.96	15.74	40.90	4.46
6318	8715	8.303876	AGCCCATTACAACACACTTTATTAAAG	58.696	33.333	13.44	13.44	44.10	1.85
6321	8720	6.151985	CCAGCCCATTACAACACACTTTATTA	59.848	38.462	0.00	0.00	0.00	0.98
6333	8732	0.037590	AACGAGCCAGCCCATTACAA	59.962	50.000	0.00	0.00	0.00	2.41
6359	8758	2.188817	AGGATCTCTGGCTTAAACGGT	58.811	47.619	0.00	0.00	0.00	4.83
6360	8759	2.990066	AGGATCTCTGGCTTAAACGG	57.010	50.000	0.00	0.00	0.00	4.44
6366	8765	0.539051	CGTGGAAGGATCTCTGGCTT	59.461	55.000	0.00	0.00	0.00	4.35
6370	8769	0.803768	CGCACGTGGAAGGATCTCTG	60.804	60.000	18.88	0.00	0.00	3.35
6430	8829	4.825085	AGACATTTGACAAAACGTACCCAT	59.175	37.500	4.41	0.00	0.00	4.00
6437	8836	7.276953	AGAAAAACAGACATTTGACAAAACG	57.723	32.000	4.41	2.10	0.00	3.60
6439	8838	9.875675	CAAAAGAAAAACAGACATTTGACAAAA	57.124	25.926	4.41	0.00	0.00	2.44
6471	8871	3.319122	GGGCAATATAGACCTTTGGCAAG	59.681	47.826	0.00	0.00	44.92	4.01
6498	8898	0.597118	TACAACCCCGTCACGAAACG	60.597	55.000	0.00	7.24	42.24	3.60
6499	8899	0.861185	GTACAACCCCGTCACGAAAC	59.139	55.000	0.00	0.00	0.00	2.78
6567	8974	8.677148	TTTAGAGGTATCTATTTGTCCAATGC	57.323	34.615	0.00	0.00	37.86	3.56
6666	9302	1.242989	TCAACAGCAAAAGCCGCATA	58.757	45.000	0.00	0.00	0.00	3.14
6671	9307	2.997986	CCATGATTCAACAGCAAAAGCC	59.002	45.455	0.00	0.00	0.00	4.35
6684	9327	5.526115	CATTGTAATGTGGCTCCATGATTC	58.474	41.667	0.00	0.00	0.00	2.52
6697	9340	5.357878	AGATCCGTTTCATGCATTGTAATGT	59.642	36.000	0.00	0.00	38.65	2.71
6705	9351	6.698008	TTAATGAAGATCCGTTTCATGCAT	57.302	33.333	8.88	0.00	42.73	3.96
6706	9352	5.449041	GCTTAATGAAGATCCGTTTCATGCA	60.449	40.000	8.88	0.00	42.73	3.96
6707	9353	4.972440	GCTTAATGAAGATCCGTTTCATGC	59.028	41.667	8.88	5.68	42.73	4.06
6708	9354	5.006649	TCGCTTAATGAAGATCCGTTTCATG	59.993	40.000	8.88	0.00	42.73	3.07
6718	9364	9.859427	TCAATTTTTGAATCGCTTAATGAAGAT	57.141	25.926	0.00	0.00	36.59	2.40
6731	9377	8.902040	AATAGCGACTTCTCAATTTTTGAATC	57.098	30.769	0.00	0.00	39.58	2.52
6741	9387	8.182881	GTCTCTTAGTAAATAGCGACTTCTCAA	58.817	37.037	0.00	0.00	0.00	3.02
6742	9388	7.336176	TGTCTCTTAGTAAATAGCGACTTCTCA	59.664	37.037	0.00	0.00	0.00	3.27
6859	9517	6.658188	ACTAGTTAGAGTCTGACTTTTGCT	57.342	37.500	21.35	6.86	32.61	3.91
6914	9605	3.644399	GAGTTGGAGGTCCGGTCGC	62.644	68.421	0.00	0.00	39.43	5.19
6931	9622	7.179160	TGAGAGTTGACATCTATGAAAAGGAGA	59.821	37.037	0.00	0.00	0.00	3.71
6933	9624	7.099764	GTGAGAGTTGACATCTATGAAAAGGA	58.900	38.462	0.00	0.00	0.00	3.36
6939	9630	5.982890	TGTGTGAGAGTTGACATCTATGA	57.017	39.130	0.00	0.00	0.00	2.15
6961	9653	5.822519	TGCTTGATCTGTTGTTCTTGTAGTT	59.177	36.000	0.00	0.00	0.00	2.24
7001	9709	1.108776	TCGACAGGGAGGATTTACGG	58.891	55.000	0.00	0.00	0.00	4.02
7004	9712	3.134081	GGTCAATCGACAGGGAGGATTTA	59.866	47.826	0.00	0.00	44.54	1.40
7005	9713	2.092914	GGTCAATCGACAGGGAGGATTT	60.093	50.000	0.00	0.00	44.54	2.17
7007	9715	1.123928	GGTCAATCGACAGGGAGGAT	58.876	55.000	0.00	0.00	44.54	3.24
7019	9728	2.735134	GTTAGGTGTGTGTCGGTCAATC	59.265	50.000	0.00	0.00	0.00	2.67
7020	9729	2.103432	TGTTAGGTGTGTGTCGGTCAAT	59.897	45.455	0.00	0.00	0.00	2.57
7021	9730	1.481363	TGTTAGGTGTGTGTCGGTCAA	59.519	47.619	0.00	0.00	0.00	3.18
7022	9731	1.112950	TGTTAGGTGTGTGTCGGTCA	58.887	50.000	0.00	0.00	0.00	4.02
7025	9734	0.865769	GCTTGTTAGGTGTGTGTCGG	59.134	55.000	0.00	0.00	0.00	4.79
7058	9771	1.337071	GAATCATGCCAGCCATCACAG	59.663	52.381	0.00	0.00	29.71	3.66
7194	9907	1.300233	CTTAGCGCCGACTCCCATC	60.300	63.158	2.29	0.00	0.00	3.51
7195	9908	2.797278	CCTTAGCGCCGACTCCCAT	61.797	63.158	2.29	0.00	0.00	4.00
7239	9967	4.459298	GCCTCCAGCCTTAGCATTAGCT	62.459	54.545	0.00	0.00	45.37	3.32
7368	10111	3.293311	TCGTAATAGCCGTAGCCATTC	57.707	47.619	0.00	0.00	41.25	2.67
7371	10114	3.365264	CGTAATCGTAATAGCCGTAGCCA	60.365	47.826	0.00	0.00	41.25	4.75
7375	10118	2.412716	CCGCGTAATCGTAATAGCCGTA	60.413	50.000	4.92	0.00	39.49	4.02
7376	10119	1.664016	CCGCGTAATCGTAATAGCCGT	60.664	52.381	4.92	0.00	39.49	5.68
7395	10138	0.324830	AGTGAGCTCAGGGGTAGTCC	60.325	60.000	18.89	1.40	0.00	3.85
7534	11768	4.922026	ACAACCACCGTCCACCGC	62.922	66.667	0.00	0.00	34.38	5.68
7547	11781	2.548057	TCCAGATTTCACGAGCAACAAC	59.452	45.455	0.00	0.00	0.00	3.32
7548	11782	2.548057	GTCCAGATTTCACGAGCAACAA	59.452	45.455	0.00	0.00	0.00	2.83
7549	11783	2.143122	GTCCAGATTTCACGAGCAACA	58.857	47.619	0.00	0.00	0.00	3.33
7590	11832	3.863424	CACACACCAGGACGTGATAATAC	59.137	47.826	17.48	0.00	37.20	1.89
7596	11838	1.142965	CACACACACCAGGACGTGA	59.857	57.895	17.48	0.00	37.20	4.35
7608	11850	3.682858	ACACAGTAACTCACAACACACAC	59.317	43.478	0.00	0.00	0.00	3.82
7609	11851	3.930229	GACACAGTAACTCACAACACACA	59.070	43.478	0.00	0.00	0.00	3.72
7636	11878	0.828022	TGAACTGAACACCCACGAGT	59.172	50.000	0.00	0.00	0.00	4.18
7637	11879	1.202533	ACTGAACTGAACACCCACGAG	60.203	52.381	0.00	0.00	0.00	4.18
7890	14070	2.410134	CGCGTAACGTTTTAAGTGGTCC	60.410	50.000	5.91	0.00	36.87	4.46
7910	14090	4.012895	GCAGTGGTTGTGGACGCG	62.013	66.667	3.53	3.53	0.00	6.01
7961	14141	0.021610	CGTCACTTACTTAACGCGCG	59.978	55.000	30.96	30.96	0.00	6.86
8103	15194	3.791245	TGGGCAACATTTTGAAAGTGTC	58.209	40.909	6.53	0.00	34.24	3.67
8106	15197	6.772360	AATTTTGGGCAACATTTTGAAAGT	57.228	29.167	0.00	0.00	34.24	2.66

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.