Multiple sequence alignment - TraesCS7A01G180900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G180900 chr7A 100.000 3157 0 0 1 3157 135691238 135688082 0.000000e+00 5830.0
1 TraesCS7A01G180900 chr7A 98.233 283 4 1 2601 2883 627156428 627156709 7.870000e-136 494.0
2 TraesCS7A01G180900 chr7D 91.441 2617 109 45 69 2607 136206236 136203657 0.000000e+00 3485.0
3 TraesCS7A01G180900 chr7D 88.849 278 22 2 2889 3157 136203644 136203367 1.810000e-87 333.0
4 TraesCS7A01G180900 chr7D 82.883 222 31 6 1545 1765 582458606 582458821 3.210000e-45 193.0
5 TraesCS7A01G180900 chr7B 90.046 2632 123 69 69 2607 99090903 99088318 0.000000e+00 3280.0
6 TraesCS7A01G180900 chr7B 91.880 234 15 1 2924 3157 99088306 99088077 1.090000e-84 324.0
7 TraesCS7A01G180900 chr7B 100.000 28 0 0 1159 1186 649845045 649845072 6.000000e-03 52.8
8 TraesCS7A01G180900 chr5A 99.286 280 2 0 2604 2883 322864723 322865002 1.010000e-139 507.0
9 TraesCS7A01G180900 chr5A 84.286 280 26 12 1582 1859 393917969 393918232 1.120000e-64 257.0
10 TraesCS7A01G180900 chr1B 97.895 285 6 0 2601 2885 167110248 167110532 7.870000e-136 494.0
11 TraesCS7A01G180900 chr4A 97.895 285 5 1 2600 2883 179068050 179067766 2.830000e-135 492.0
12 TraesCS7A01G180900 chr4A 82.353 272 44 4 1577 1846 27589611 27589880 1.890000e-57 233.0
13 TraesCS7A01G180900 chr2A 97.561 287 7 0 2605 2891 70704026 70704312 2.830000e-135 492.0
14 TraesCS7A01G180900 chr2A 100.000 28 0 0 1073 1100 740151041 740151014 6.000000e-03 52.8
15 TraesCS7A01G180900 chr2B 98.214 280 5 0 2605 2884 105747394 105747673 1.020000e-134 490.0
16 TraesCS7A01G180900 chr1A 97.535 284 7 0 2603 2886 304614275 304613992 1.320000e-133 486.0
17 TraesCS7A01G180900 chr3B 97.849 279 6 0 2605 2883 423737211 423737489 1.700000e-132 483.0
18 TraesCS7A01G180900 chr4B 96.246 293 9 2 2592 2883 357999239 357999530 2.200000e-131 479.0
19 TraesCS7A01G180900 chr6D 81.086 534 50 29 1593 2126 388951402 388950920 2.300000e-101 379.0
20 TraesCS7A01G180900 chr6B 80.819 537 55 26 1593 2126 581867818 581867327 8.270000e-101 377.0
21 TraesCS7A01G180900 chr6A 87.227 321 38 3 1593 1913 535403369 535403052 2.310000e-96 363.0
22 TraesCS7A01G180900 chr5D 84.074 270 27 10 1592 1859 304163178 304162923 2.430000e-61 246.0
23 TraesCS7A01G180900 chr4D 83.137 255 41 2 1593 1846 438153353 438153606 6.810000e-57 231.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G180900 chr7A 135688082 135691238 3156 True 5830 5830 100.000 1 3157 1 chr7A.!!$R1 3156
1 TraesCS7A01G180900 chr7D 136203367 136206236 2869 True 1909 3485 90.145 69 3157 2 chr7D.!!$R1 3088
2 TraesCS7A01G180900 chr7B 99088077 99090903 2826 True 1802 3280 90.963 69 3157 2 chr7B.!!$R1 3088

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 819 0.098905 TCTTCTTGATCGGACGAGCG 59.901 55.0 5.48 0.0 32.52 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2721 2861 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.0 0.0 0.0 0.0 5.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.358090 GGAGGAACCCTAATCTAGAAAACG 58.642 45.833 0.00 0.00 31.76 3.60
31 32 5.354842 AGGAACCCTAATCTAGAAAACGG 57.645 43.478 0.00 0.00 28.47 4.44
32 33 5.028131 AGGAACCCTAATCTAGAAAACGGA 58.972 41.667 0.00 0.00 28.47 4.69
33 34 5.486419 AGGAACCCTAATCTAGAAAACGGAA 59.514 40.000 0.00 0.00 28.47 4.30
34 35 6.013119 AGGAACCCTAATCTAGAAAACGGAAA 60.013 38.462 0.00 0.00 28.47 3.13
35 36 6.656270 GGAACCCTAATCTAGAAAACGGAAAA 59.344 38.462 0.00 0.00 0.00 2.29
36 37 7.148289 GGAACCCTAATCTAGAAAACGGAAAAG 60.148 40.741 0.00 0.00 0.00 2.27
37 38 7.012661 ACCCTAATCTAGAAAACGGAAAAGA 57.987 36.000 0.00 0.00 0.00 2.52
38 39 7.455891 ACCCTAATCTAGAAAACGGAAAAGAA 58.544 34.615 0.00 0.00 0.00 2.52
39 40 7.940688 ACCCTAATCTAGAAAACGGAAAAGAAA 59.059 33.333 0.00 0.00 0.00 2.52
40 41 8.451748 CCCTAATCTAGAAAACGGAAAAGAAAG 58.548 37.037 0.00 0.00 0.00 2.62
41 42 7.963465 CCTAATCTAGAAAACGGAAAAGAAAGC 59.037 37.037 0.00 0.00 0.00 3.51
42 43 6.877611 ATCTAGAAAACGGAAAAGAAAGCA 57.122 33.333 0.00 0.00 0.00 3.91
43 44 6.687081 TCTAGAAAACGGAAAAGAAAGCAA 57.313 33.333 0.00 0.00 0.00 3.91
44 45 7.090953 TCTAGAAAACGGAAAAGAAAGCAAA 57.909 32.000 0.00 0.00 0.00 3.68
45 46 7.540299 TCTAGAAAACGGAAAAGAAAGCAAAA 58.460 30.769 0.00 0.00 0.00 2.44
46 47 8.030106 TCTAGAAAACGGAAAAGAAAGCAAAAA 58.970 29.630 0.00 0.00 0.00 1.94
126 128 4.944317 CCTCAGTGGTAATCCTCCTTTTTC 59.056 45.833 0.00 0.00 34.23 2.29
224 230 3.635331 CGATGGGCATGAATGAATGAAC 58.365 45.455 0.00 0.00 0.00 3.18
225 231 3.317149 CGATGGGCATGAATGAATGAACT 59.683 43.478 0.00 0.00 0.00 3.01
228 234 3.444742 TGGGCATGAATGAATGAACTCAC 59.555 43.478 0.00 0.00 0.00 3.51
229 235 3.444742 GGGCATGAATGAATGAACTCACA 59.555 43.478 0.00 0.00 0.00 3.58
230 236 4.082081 GGGCATGAATGAATGAACTCACAA 60.082 41.667 0.00 0.00 0.00 3.33
248 254 0.188342 AACAAGGCCAGGTCAACCAT 59.812 50.000 5.01 0.00 38.89 3.55
261 267 3.918253 AACCATGCATCGCCACGGT 62.918 57.895 0.00 0.00 0.00 4.83
284 290 4.988598 CGCGTGGCACCACTCCTT 62.989 66.667 17.34 0.00 44.16 3.36
323 330 0.397816 CCACAACCCCACCCTTTCAA 60.398 55.000 0.00 0.00 0.00 2.69
346 353 2.394912 GAGGTCTCGTCGTCGTCG 59.605 66.667 5.50 5.50 38.33 5.12
347 354 2.356793 AGGTCTCGTCGTCGTCGT 60.357 61.111 11.41 0.00 38.33 4.34
384 394 1.133976 CATTCACACCCTCCTCCATCC 60.134 57.143 0.00 0.00 0.00 3.51
513 536 3.807839 CCACGGCCATCCCATCCA 61.808 66.667 2.24 0.00 0.00 3.41
546 569 4.035102 GACCCAGGCACCCCACTC 62.035 72.222 0.00 0.00 0.00 3.51
694 717 3.111853 TGGTTGCTATTAGATCAGGCG 57.888 47.619 0.00 0.00 0.00 5.52
749 772 0.389948 TCTTCTTCCGCTTCCGCTTC 60.390 55.000 0.00 0.00 0.00 3.86
785 808 6.949352 AGCTTTTGATCTTGTTCTTCTTGA 57.051 33.333 0.00 0.00 0.00 3.02
787 810 7.592051 AGCTTTTGATCTTGTTCTTCTTGATC 58.408 34.615 0.00 0.00 35.44 2.92
796 819 0.098905 TCTTCTTGATCGGACGAGCG 59.901 55.000 5.48 0.00 32.52 5.03
834 857 1.693627 TTACTCCTCTGGATCCTCGC 58.306 55.000 14.23 0.00 0.00 5.03
925 948 3.121030 CCCTTCAGGTTGCTCGCG 61.121 66.667 0.00 0.00 0.00 5.87
1093 1145 2.438795 AGCTCCTCCTCGTCGTCC 60.439 66.667 0.00 0.00 0.00 4.79
1207 1259 3.695830 TTTTCATTCTACGCCACCTCT 57.304 42.857 0.00 0.00 0.00 3.69
1214 1266 1.445716 CTACGCCACCTCTACCTCCG 61.446 65.000 0.00 0.00 0.00 4.63
1215 1267 4.208686 CGCCACCTCTACCTCCGC 62.209 72.222 0.00 0.00 0.00 5.54
1216 1268 3.851128 GCCACCTCTACCTCCGCC 61.851 72.222 0.00 0.00 0.00 6.13
1217 1269 2.042843 CCACCTCTACCTCCGCCT 60.043 66.667 0.00 0.00 0.00 5.52
1218 1270 2.128507 CCACCTCTACCTCCGCCTC 61.129 68.421 0.00 0.00 0.00 4.70
1219 1271 2.128507 CACCTCTACCTCCGCCTCC 61.129 68.421 0.00 0.00 0.00 4.30
1245 1297 3.925299 TCGTCGCCATTTTCGTATTACAA 59.075 39.130 0.00 0.00 0.00 2.41
1253 1305 7.132863 GCCATTTTCGTATTACAATTCCTCTC 58.867 38.462 0.00 0.00 0.00 3.20
1877 1953 2.430244 CACCGTCGTCCAAGTCGG 60.430 66.667 0.00 0.00 45.67 4.79
1882 1958 3.744719 TCGTCCAAGTCGGCTCCG 61.745 66.667 1.14 1.14 41.35 4.63
2214 2311 4.442375 AGGCTCGATGGAATATTAGACG 57.558 45.455 0.00 0.00 0.00 4.18
2329 2429 9.574401 CTTATTACTTAGCTACGTACGTACTTC 57.426 37.037 23.60 14.95 0.00 3.01
2352 2455 8.547481 TTCATTGTATTAGTGATCTCCTGGTA 57.453 34.615 0.00 0.00 0.00 3.25
2403 2506 2.263077 GCCAGTCGAGAGTGTAATGTG 58.737 52.381 7.11 0.00 0.00 3.21
2485 2598 8.654230 TCTATCTTGAGCATATTTCAGTTGTC 57.346 34.615 0.00 0.00 0.00 3.18
2486 2599 8.260114 TCTATCTTGAGCATATTTCAGTTGTCA 58.740 33.333 0.00 0.00 0.00 3.58
2488 2601 7.312657 TCTTGAGCATATTTCAGTTGTCATC 57.687 36.000 0.00 0.00 0.00 2.92
2490 2603 8.260114 TCTTGAGCATATTTCAGTTGTCATCTA 58.740 33.333 0.00 0.00 0.00 1.98
2492 2605 8.599055 TGAGCATATTTCAGTTGTCATCTATC 57.401 34.615 0.00 0.00 0.00 2.08
2499 2612 7.672983 TTTCAGTTGTCATCTATCTTGTTCC 57.327 36.000 0.00 0.00 0.00 3.62
2500 2613 6.358974 TCAGTTGTCATCTATCTTGTTCCA 57.641 37.500 0.00 0.00 0.00 3.53
2501 2614 6.401394 TCAGTTGTCATCTATCTTGTTCCAG 58.599 40.000 0.00 0.00 0.00 3.86
2502 2615 6.211384 TCAGTTGTCATCTATCTTGTTCCAGA 59.789 38.462 0.00 0.00 0.00 3.86
2504 2617 7.388776 CAGTTGTCATCTATCTTGTTCCAGAAA 59.611 37.037 0.00 0.00 0.00 2.52
2505 2618 7.389053 AGTTGTCATCTATCTTGTTCCAGAAAC 59.611 37.037 0.00 0.00 38.43 2.78
2507 2620 7.453393 TGTCATCTATCTTGTTCCAGAAACTT 58.547 34.615 0.00 0.00 38.76 2.66
2508 2621 7.604164 TGTCATCTATCTTGTTCCAGAAACTTC 59.396 37.037 0.00 0.00 38.76 3.01
2568 2705 9.886132 TTCTGAAGAACCCTTACTATAAACATC 57.114 33.333 0.00 0.00 31.62 3.06
2608 2748 6.783708 AGTAGAATGGAGAGAACAGTAAGG 57.216 41.667 0.00 0.00 0.00 2.69
2609 2749 4.479786 AGAATGGAGAGAACAGTAAGGC 57.520 45.455 0.00 0.00 0.00 4.35
2620 2760 3.149196 AACAGTAAGGCTGGTCACAATG 58.851 45.455 0.00 0.00 42.51 2.82
2621 2761 2.086869 CAGTAAGGCTGGTCACAATGG 58.913 52.381 0.00 0.00 41.42 3.16
2622 2762 1.004745 AGTAAGGCTGGTCACAATGGG 59.995 52.381 0.00 0.00 0.00 4.00
2624 2764 1.434513 AAGGCTGGTCACAATGGGGA 61.435 55.000 0.00 0.00 0.00 4.81
2626 2766 1.379044 GCTGGTCACAATGGGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
2628 2768 0.698238 CTGGTCACAATGGGGAGGAA 59.302 55.000 0.00 0.00 0.00 3.36
2629 2769 0.404040 TGGTCACAATGGGGAGGAAC 59.596 55.000 0.00 0.00 0.00 3.62
2631 2771 1.075536 GGTCACAATGGGGAGGAACTT 59.924 52.381 0.00 0.00 41.55 2.66
2632 2772 2.307686 GGTCACAATGGGGAGGAACTTA 59.692 50.000 0.00 0.00 41.55 2.24
2633 2773 3.610911 GTCACAATGGGGAGGAACTTAG 58.389 50.000 0.00 0.00 41.55 2.18
2634 2774 2.576191 TCACAATGGGGAGGAACTTAGG 59.424 50.000 0.00 0.00 41.55 2.69
2635 2775 2.576191 CACAATGGGGAGGAACTTAGGA 59.424 50.000 0.00 0.00 41.55 2.94
2636 2776 2.846827 ACAATGGGGAGGAACTTAGGAG 59.153 50.000 0.00 0.00 41.55 3.69
2637 2777 2.846827 CAATGGGGAGGAACTTAGGAGT 59.153 50.000 0.00 0.00 41.55 3.85
2638 2778 4.037927 CAATGGGGAGGAACTTAGGAGTA 58.962 47.826 0.00 0.00 41.55 2.59
2639 2779 3.858696 TGGGGAGGAACTTAGGAGTAA 57.141 47.619 0.00 0.00 41.55 2.24
2640 2780 3.447950 TGGGGAGGAACTTAGGAGTAAC 58.552 50.000 0.00 0.00 41.55 2.50
2641 2781 3.181404 TGGGGAGGAACTTAGGAGTAACA 60.181 47.826 0.00 0.00 41.55 2.41
2642 2782 4.038633 GGGGAGGAACTTAGGAGTAACAT 58.961 47.826 0.00 0.00 41.55 2.71
2643 2783 4.101274 GGGGAGGAACTTAGGAGTAACATC 59.899 50.000 0.00 0.00 41.55 3.06
2644 2784 4.715297 GGGAGGAACTTAGGAGTAACATCA 59.285 45.833 0.00 0.00 41.55 3.07
2645 2785 5.395435 GGGAGGAACTTAGGAGTAACATCAC 60.395 48.000 0.00 0.00 41.55 3.06
2646 2786 5.187186 GGAGGAACTTAGGAGTAACATCACA 59.813 44.000 0.00 0.00 41.55 3.58
2647 2787 6.038997 AGGAACTTAGGAGTAACATCACAC 57.961 41.667 0.00 0.00 34.21 3.82
2648 2788 5.542635 AGGAACTTAGGAGTAACATCACACA 59.457 40.000 0.00 0.00 34.21 3.72
2649 2789 5.638234 GGAACTTAGGAGTAACATCACACAC 59.362 44.000 0.00 0.00 34.21 3.82
2650 2790 6.420913 AACTTAGGAGTAACATCACACACT 57.579 37.500 0.00 0.00 34.21 3.55
2651 2791 6.026947 ACTTAGGAGTAACATCACACACTC 57.973 41.667 0.00 0.00 37.32 3.51
2657 2797 6.648725 GAGTAACATCACACACTCCAATAC 57.351 41.667 0.00 0.00 32.93 1.89
2658 2798 6.109156 AGTAACATCACACACTCCAATACA 57.891 37.500 0.00 0.00 0.00 2.29
2659 2799 6.530120 AGTAACATCACACACTCCAATACAA 58.470 36.000 0.00 0.00 0.00 2.41
2660 2800 5.689383 AACATCACACACTCCAATACAAC 57.311 39.130 0.00 0.00 0.00 3.32
2661 2801 4.973168 ACATCACACACTCCAATACAACT 58.027 39.130 0.00 0.00 0.00 3.16
2662 2802 5.376625 ACATCACACACTCCAATACAACTT 58.623 37.500 0.00 0.00 0.00 2.66
2663 2803 5.827797 ACATCACACACTCCAATACAACTTT 59.172 36.000 0.00 0.00 0.00 2.66
2664 2804 5.749596 TCACACACTCCAATACAACTTTG 57.250 39.130 0.00 0.00 0.00 2.77
2665 2805 4.036262 TCACACACTCCAATACAACTTTGC 59.964 41.667 0.00 0.00 0.00 3.68
2666 2806 4.036734 CACACACTCCAATACAACTTTGCT 59.963 41.667 0.00 0.00 0.00 3.91
2667 2807 4.644685 ACACACTCCAATACAACTTTGCTT 59.355 37.500 0.00 0.00 0.00 3.91
2668 2808 5.825679 ACACACTCCAATACAACTTTGCTTA 59.174 36.000 0.00 0.00 0.00 3.09
2669 2809 6.490040 ACACACTCCAATACAACTTTGCTTAT 59.510 34.615 0.00 0.00 0.00 1.73
2670 2810 6.803320 CACACTCCAATACAACTTTGCTTATG 59.197 38.462 0.00 0.00 0.00 1.90
2671 2811 6.490040 ACACTCCAATACAACTTTGCTTATGT 59.510 34.615 0.00 0.00 0.00 2.29
2672 2812 6.803320 CACTCCAATACAACTTTGCTTATGTG 59.197 38.462 0.00 0.00 0.00 3.21
2673 2813 6.071952 ACTCCAATACAACTTTGCTTATGTGG 60.072 38.462 0.00 0.00 0.00 4.17
2674 2814 4.864247 CCAATACAACTTTGCTTATGTGGC 59.136 41.667 0.00 0.00 0.00 5.01
2675 2815 5.468592 CAATACAACTTTGCTTATGTGGCA 58.531 37.500 0.00 0.00 37.97 4.92
2676 2816 3.369546 ACAACTTTGCTTATGTGGCAC 57.630 42.857 11.55 11.55 39.55 5.01
2677 2817 2.692557 ACAACTTTGCTTATGTGGCACA 59.307 40.909 24.36 24.36 39.55 4.57
2678 2818 3.321682 ACAACTTTGCTTATGTGGCACAT 59.678 39.130 33.18 33.18 44.52 3.21
2679 2819 4.522405 ACAACTTTGCTTATGTGGCACATA 59.478 37.500 31.06 31.06 44.52 2.29
2680 2820 5.185635 ACAACTTTGCTTATGTGGCACATAT 59.814 36.000 33.89 18.57 44.52 1.78
2681 2821 5.920193 ACTTTGCTTATGTGGCACATATT 57.080 34.783 33.89 17.87 44.52 1.28
2682 2822 6.284891 ACTTTGCTTATGTGGCACATATTT 57.715 33.333 33.89 17.52 44.52 1.40
2683 2823 7.403312 ACTTTGCTTATGTGGCACATATTTA 57.597 32.000 33.89 21.55 44.52 1.40
2684 2824 7.835822 ACTTTGCTTATGTGGCACATATTTAA 58.164 30.769 33.89 25.24 44.52 1.52
2685 2825 8.477256 ACTTTGCTTATGTGGCACATATTTAAT 58.523 29.630 33.89 15.77 44.52 1.40
2686 2826 8.645730 TTTGCTTATGTGGCACATATTTAATG 57.354 30.769 33.89 20.34 44.52 1.90
2687 2827 7.579761 TGCTTATGTGGCACATATTTAATGA 57.420 32.000 33.89 19.68 44.52 2.57
2688 2828 8.005192 TGCTTATGTGGCACATATTTAATGAA 57.995 30.769 33.89 20.49 44.52 2.57
2689 2829 8.136800 TGCTTATGTGGCACATATTTAATGAAG 58.863 33.333 33.89 27.40 44.52 3.02
2690 2830 8.352201 GCTTATGTGGCACATATTTAATGAAGA 58.648 33.333 33.89 17.83 44.52 2.87
2691 2831 9.888878 CTTATGTGGCACATATTTAATGAAGAG 57.111 33.333 33.89 22.09 44.52 2.85
2692 2832 9.625747 TTATGTGGCACATATTTAATGAAGAGA 57.374 29.630 33.89 16.11 44.52 3.10
2693 2833 7.558161 TGTGGCACATATTTAATGAAGAGAG 57.442 36.000 17.96 0.00 44.52 3.20
2694 2834 7.337938 TGTGGCACATATTTAATGAAGAGAGA 58.662 34.615 17.96 0.00 44.52 3.10
2695 2835 7.496920 TGTGGCACATATTTAATGAAGAGAGAG 59.503 37.037 17.96 0.00 44.52 3.20
2696 2836 6.994496 TGGCACATATTTAATGAAGAGAGAGG 59.006 38.462 0.00 0.00 0.00 3.69
2697 2837 6.995091 GGCACATATTTAATGAAGAGAGAGGT 59.005 38.462 0.00 0.00 0.00 3.85
2698 2838 7.041508 GGCACATATTTAATGAAGAGAGAGGTG 60.042 40.741 0.00 0.00 0.00 4.00
2699 2839 7.519649 GCACATATTTAATGAAGAGAGAGGTGC 60.520 40.741 0.00 0.00 37.76 5.01
2700 2840 7.714377 CACATATTTAATGAAGAGAGAGGTGCT 59.286 37.037 0.00 0.00 0.00 4.40
2701 2841 8.270744 ACATATTTAATGAAGAGAGAGGTGCTT 58.729 33.333 0.00 0.00 0.00 3.91
2702 2842 6.998968 ATTTAATGAAGAGAGAGGTGCTTG 57.001 37.500 0.00 0.00 0.00 4.01
2703 2843 5.489792 TTAATGAAGAGAGAGGTGCTTGT 57.510 39.130 0.00 0.00 0.00 3.16
2704 2844 2.827800 TGAAGAGAGAGGTGCTTGTG 57.172 50.000 0.00 0.00 0.00 3.33
2705 2845 1.345741 TGAAGAGAGAGGTGCTTGTGG 59.654 52.381 0.00 0.00 0.00 4.17
2706 2846 1.346068 GAAGAGAGAGGTGCTTGTGGT 59.654 52.381 0.00 0.00 0.00 4.16
2707 2847 2.310779 AGAGAGAGGTGCTTGTGGTA 57.689 50.000 0.00 0.00 0.00 3.25
2708 2848 2.609747 AGAGAGAGGTGCTTGTGGTAA 58.390 47.619 0.00 0.00 0.00 2.85
2709 2849 2.300437 AGAGAGAGGTGCTTGTGGTAAC 59.700 50.000 0.00 0.00 0.00 2.50
2710 2850 2.300437 GAGAGAGGTGCTTGTGGTAACT 59.700 50.000 0.00 0.00 37.61 2.24
2711 2851 3.507411 AGAGAGGTGCTTGTGGTAACTA 58.493 45.455 0.00 0.00 37.61 2.24
2712 2852 3.511934 AGAGAGGTGCTTGTGGTAACTAG 59.488 47.826 0.00 0.00 37.61 2.57
2713 2853 2.567615 AGAGGTGCTTGTGGTAACTAGG 59.432 50.000 0.00 0.00 37.61 3.02
2714 2854 2.302157 GAGGTGCTTGTGGTAACTAGGT 59.698 50.000 0.00 0.00 37.61 3.08
2715 2855 3.512724 GAGGTGCTTGTGGTAACTAGGTA 59.487 47.826 0.00 0.00 37.61 3.08
2716 2856 3.905591 AGGTGCTTGTGGTAACTAGGTAA 59.094 43.478 0.00 0.00 37.61 2.85
2717 2857 4.020485 AGGTGCTTGTGGTAACTAGGTAAG 60.020 45.833 0.00 0.00 37.61 2.34
2718 2858 4.262765 GGTGCTTGTGGTAACTAGGTAAGT 60.263 45.833 0.00 0.00 41.49 2.24
2720 2860 6.458210 GTGCTTGTGGTAACTAGGTAAGTTA 58.542 40.000 0.00 0.00 46.85 2.24
2733 2873 3.929094 GGTAAGTTACCGGAACATCACA 58.071 45.455 16.22 0.00 40.86 3.58
2734 2874 3.681417 GGTAAGTTACCGGAACATCACAC 59.319 47.826 16.22 3.66 40.86 3.82
2735 2875 3.478857 AAGTTACCGGAACATCACACA 57.521 42.857 9.46 0.00 40.86 3.72
2736 2876 2.762745 AGTTACCGGAACATCACACAC 58.237 47.619 9.46 0.00 40.86 3.82
2737 2877 2.367567 AGTTACCGGAACATCACACACT 59.632 45.455 9.46 0.00 40.86 3.55
2738 2878 2.735134 GTTACCGGAACATCACACACTC 59.265 50.000 9.46 0.00 38.02 3.51
2739 2879 0.034896 ACCGGAACATCACACACTCC 59.965 55.000 9.46 0.00 0.00 3.85
2740 2880 0.034756 CCGGAACATCACACACTCCA 59.965 55.000 0.00 0.00 0.00 3.86
2741 2881 1.542328 CCGGAACATCACACACTCCAA 60.542 52.381 0.00 0.00 0.00 3.53
2742 2882 2.217750 CGGAACATCACACACTCCAAA 58.782 47.619 0.00 0.00 0.00 3.28
2743 2883 2.616376 CGGAACATCACACACTCCAAAA 59.384 45.455 0.00 0.00 0.00 2.44
2744 2884 3.066064 CGGAACATCACACACTCCAAAAA 59.934 43.478 0.00 0.00 0.00 1.94
2775 2915 9.639601 TGAGTCTATAACCTAATAAATGCATCG 57.360 33.333 0.00 0.00 0.00 3.84
2776 2916 9.640963 GAGTCTATAACCTAATAAATGCATCGT 57.359 33.333 0.00 0.00 0.00 3.73
2777 2917 9.998106 AGTCTATAACCTAATAAATGCATCGTT 57.002 29.630 0.00 0.00 0.00 3.85
2793 2933 5.320607 CATCGTTGCATGACACTACATAG 57.679 43.478 0.00 0.00 0.00 2.23
2794 2934 4.712122 TCGTTGCATGACACTACATAGA 57.288 40.909 0.00 0.00 0.00 1.98
2795 2935 5.262588 TCGTTGCATGACACTACATAGAT 57.737 39.130 0.00 0.00 0.00 1.98
2796 2936 5.043248 TCGTTGCATGACACTACATAGATG 58.957 41.667 0.00 0.00 0.00 2.90
2797 2937 4.805719 CGTTGCATGACACTACATAGATGT 59.194 41.667 0.00 0.08 44.48 3.06
2798 2938 5.291858 CGTTGCATGACACTACATAGATGTT 59.708 40.000 0.00 0.00 41.97 2.71
2799 2939 6.508563 CGTTGCATGACACTACATAGATGTTC 60.509 42.308 0.00 0.00 41.97 3.18
2800 2940 5.359756 TGCATGACACTACATAGATGTTCC 58.640 41.667 0.00 0.00 41.97 3.62
2801 2941 5.129320 TGCATGACACTACATAGATGTTCCT 59.871 40.000 0.00 0.00 41.97 3.36
2802 2942 6.323739 TGCATGACACTACATAGATGTTCCTA 59.676 38.462 0.00 0.00 41.97 2.94
2803 2943 7.015584 TGCATGACACTACATAGATGTTCCTAT 59.984 37.037 0.00 0.00 41.97 2.57
2804 2944 7.543868 GCATGACACTACATAGATGTTCCTATC 59.456 40.741 0.00 0.00 41.97 2.08
2805 2945 7.526142 TGACACTACATAGATGTTCCTATCC 57.474 40.000 0.00 0.00 41.97 2.59
2806 2946 7.066781 TGACACTACATAGATGTTCCTATCCA 58.933 38.462 0.00 0.00 41.97 3.41
2807 2947 7.014326 TGACACTACATAGATGTTCCTATCCAC 59.986 40.741 0.00 0.00 41.97 4.02
2808 2948 7.069986 ACACTACATAGATGTTCCTATCCACT 58.930 38.462 0.00 0.00 41.97 4.00
2809 2949 8.225416 ACACTACATAGATGTTCCTATCCACTA 58.775 37.037 0.00 0.00 41.97 2.74
2810 2950 9.249053 CACTACATAGATGTTCCTATCCACTAT 57.751 37.037 0.00 0.00 41.97 2.12
2811 2951 9.249053 ACTACATAGATGTTCCTATCCACTATG 57.751 37.037 0.00 0.00 41.97 2.23
2812 2952 7.487822 ACATAGATGTTCCTATCCACTATGG 57.512 40.000 0.81 0.00 37.90 2.74
2813 2953 7.248976 ACATAGATGTTCCTATCCACTATGGA 58.751 38.462 0.81 0.00 44.59 3.41
2814 2954 7.398618 ACATAGATGTTCCTATCCACTATGGAG 59.601 40.741 0.81 0.00 44.02 3.86
2832 2972 8.795842 CTATGGAGGTAGTAACATAGTCTAGG 57.204 42.308 0.00 0.00 38.48 3.02
2833 2973 5.950023 TGGAGGTAGTAACATAGTCTAGGG 58.050 45.833 0.00 0.00 0.00 3.53
2834 2974 5.673574 TGGAGGTAGTAACATAGTCTAGGGA 59.326 44.000 0.00 0.00 0.00 4.20
2835 2975 6.160992 TGGAGGTAGTAACATAGTCTAGGGAA 59.839 42.308 0.00 0.00 0.00 3.97
2836 2976 6.716173 GGAGGTAGTAACATAGTCTAGGGAAG 59.284 46.154 0.00 0.00 0.00 3.46
2837 2977 7.223472 AGGTAGTAACATAGTCTAGGGAAGT 57.777 40.000 0.00 0.00 0.00 3.01
2838 2978 7.061688 AGGTAGTAACATAGTCTAGGGAAGTG 58.938 42.308 0.00 0.00 0.00 3.16
2839 2979 6.832900 GGTAGTAACATAGTCTAGGGAAGTGT 59.167 42.308 0.00 0.00 0.00 3.55
2840 2980 6.777213 AGTAACATAGTCTAGGGAAGTGTG 57.223 41.667 0.00 0.00 0.00 3.82
2841 2981 6.254522 AGTAACATAGTCTAGGGAAGTGTGT 58.745 40.000 0.00 0.00 0.00 3.72
2842 2982 7.408543 AGTAACATAGTCTAGGGAAGTGTGTA 58.591 38.462 0.00 0.00 0.00 2.90
2843 2983 7.892241 AGTAACATAGTCTAGGGAAGTGTGTAA 59.108 37.037 0.00 0.00 0.00 2.41
2844 2984 6.777213 ACATAGTCTAGGGAAGTGTGTAAG 57.223 41.667 0.00 0.00 0.00 2.34
2845 2985 6.254522 ACATAGTCTAGGGAAGTGTGTAAGT 58.745 40.000 0.00 0.00 0.00 2.24
2846 2986 6.724905 ACATAGTCTAGGGAAGTGTGTAAGTT 59.275 38.462 0.00 0.00 0.00 2.66
2847 2987 7.892241 ACATAGTCTAGGGAAGTGTGTAAGTTA 59.108 37.037 0.00 0.00 0.00 2.24
2848 2988 6.587206 AGTCTAGGGAAGTGTGTAAGTTAC 57.413 41.667 6.06 6.06 0.00 2.50
2849 2989 6.313324 AGTCTAGGGAAGTGTGTAAGTTACT 58.687 40.000 14.00 0.00 0.00 2.24
2850 2990 7.465116 AGTCTAGGGAAGTGTGTAAGTTACTA 58.535 38.462 14.00 1.06 0.00 1.82
2851 2991 7.611079 AGTCTAGGGAAGTGTGTAAGTTACTAG 59.389 40.741 14.00 4.64 33.84 2.57
2852 2992 5.402997 AGGGAAGTGTGTAAGTTACTAGC 57.597 43.478 14.00 5.48 0.00 3.42
2853 2993 5.085219 AGGGAAGTGTGTAAGTTACTAGCT 58.915 41.667 14.00 6.35 0.00 3.32
2854 2994 5.543020 AGGGAAGTGTGTAAGTTACTAGCTT 59.457 40.000 14.00 13.25 0.00 3.74
2855 2995 6.723052 AGGGAAGTGTGTAAGTTACTAGCTTA 59.277 38.462 14.00 0.00 0.00 3.09
2856 2996 7.399478 AGGGAAGTGTGTAAGTTACTAGCTTAT 59.601 37.037 14.00 3.60 32.01 1.73
2857 2997 7.491696 GGGAAGTGTGTAAGTTACTAGCTTATG 59.508 40.741 14.00 0.00 32.01 1.90
2858 2998 8.033626 GGAAGTGTGTAAGTTACTAGCTTATGT 58.966 37.037 14.00 0.00 32.01 2.29
2859 2999 9.420551 GAAGTGTGTAAGTTACTAGCTTATGTT 57.579 33.333 14.00 0.00 32.01 2.71
2860 3000 8.983307 AGTGTGTAAGTTACTAGCTTATGTTC 57.017 34.615 14.00 0.00 32.01 3.18
2861 3001 8.804204 AGTGTGTAAGTTACTAGCTTATGTTCT 58.196 33.333 14.00 0.00 32.01 3.01
2862 3002 9.420551 GTGTGTAAGTTACTAGCTTATGTTCTT 57.579 33.333 14.00 1.42 32.01 2.52
2863 3003 9.419297 TGTGTAAGTTACTAGCTTATGTTCTTG 57.581 33.333 14.00 0.00 32.01 3.02
2864 3004 8.381387 GTGTAAGTTACTAGCTTATGTTCTTGC 58.619 37.037 14.00 3.08 32.01 4.01
2865 3005 6.986904 AAGTTACTAGCTTATGTTCTTGCC 57.013 37.500 0.00 0.00 0.00 4.52
2866 3006 5.429130 AGTTACTAGCTTATGTTCTTGCCC 58.571 41.667 0.00 0.00 0.00 5.36
2867 3007 5.045869 AGTTACTAGCTTATGTTCTTGCCCA 60.046 40.000 0.00 0.00 0.00 5.36
2868 3008 4.510167 ACTAGCTTATGTTCTTGCCCAT 57.490 40.909 0.00 0.00 0.00 4.00
2869 3009 4.860022 ACTAGCTTATGTTCTTGCCCATT 58.140 39.130 0.00 0.00 0.00 3.16
2870 3010 4.641989 ACTAGCTTATGTTCTTGCCCATTG 59.358 41.667 0.00 0.00 0.00 2.82
2871 3011 3.434309 AGCTTATGTTCTTGCCCATTGT 58.566 40.909 0.00 0.00 0.00 2.71
2872 3012 3.194116 AGCTTATGTTCTTGCCCATTGTG 59.806 43.478 0.00 0.00 0.00 3.33
2873 3013 3.193267 GCTTATGTTCTTGCCCATTGTGA 59.807 43.478 0.00 0.00 0.00 3.58
2874 3014 4.737054 CTTATGTTCTTGCCCATTGTGAC 58.263 43.478 0.00 0.00 0.00 3.67
2875 3015 1.327303 TGTTCTTGCCCATTGTGACC 58.673 50.000 0.00 0.00 0.00 4.02
2876 3016 1.327303 GTTCTTGCCCATTGTGACCA 58.673 50.000 0.00 0.00 0.00 4.02
2877 3017 1.270550 GTTCTTGCCCATTGTGACCAG 59.729 52.381 0.00 0.00 0.00 4.00
2878 3018 0.895100 TCTTGCCCATTGTGACCAGC 60.895 55.000 0.00 0.00 0.00 4.85
2879 3019 1.880819 CTTGCCCATTGTGACCAGCC 61.881 60.000 0.00 0.00 0.00 4.85
2880 3020 2.036256 GCCCATTGTGACCAGCCT 59.964 61.111 0.00 0.00 0.00 4.58
2881 3021 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
2882 3022 0.323360 GCCCATTGTGACCAGCCTAA 60.323 55.000 0.00 0.00 0.00 2.69
2883 3023 1.463674 CCCATTGTGACCAGCCTAAC 58.536 55.000 0.00 0.00 0.00 2.34
2884 3024 1.271871 CCCATTGTGACCAGCCTAACA 60.272 52.381 0.00 0.00 0.00 2.41
2885 3025 2.621407 CCCATTGTGACCAGCCTAACAT 60.621 50.000 0.00 0.00 0.00 2.71
2886 3026 3.091545 CCATTGTGACCAGCCTAACATT 58.908 45.455 0.00 0.00 0.00 2.71
2887 3027 3.129287 CCATTGTGACCAGCCTAACATTC 59.871 47.826 0.00 0.00 0.00 2.67
2888 3028 3.788227 TTGTGACCAGCCTAACATTCT 57.212 42.857 0.00 0.00 0.00 2.40
2889 3029 3.788227 TGTGACCAGCCTAACATTCTT 57.212 42.857 0.00 0.00 0.00 2.52
2890 3030 4.098914 TGTGACCAGCCTAACATTCTTT 57.901 40.909 0.00 0.00 0.00 2.52
2891 3031 4.469657 TGTGACCAGCCTAACATTCTTTT 58.530 39.130 0.00 0.00 0.00 2.27
2892 3032 4.518970 TGTGACCAGCCTAACATTCTTTTC 59.481 41.667 0.00 0.00 0.00 2.29
2893 3033 4.762251 GTGACCAGCCTAACATTCTTTTCT 59.238 41.667 0.00 0.00 0.00 2.52
2894 3034 4.761739 TGACCAGCCTAACATTCTTTTCTG 59.238 41.667 0.00 0.00 0.00 3.02
2895 3035 4.985538 ACCAGCCTAACATTCTTTTCTGA 58.014 39.130 0.00 0.00 0.00 3.27
2896 3036 5.385198 ACCAGCCTAACATTCTTTTCTGAA 58.615 37.500 0.00 0.00 0.00 3.02
2897 3037 5.474876 ACCAGCCTAACATTCTTTTCTGAAG 59.525 40.000 0.00 0.00 0.00 3.02
2898 3038 5.707298 CCAGCCTAACATTCTTTTCTGAAGA 59.293 40.000 0.00 0.00 0.00 2.87
2902 3042 8.518702 AGCCTAACATTCTTTTCTGAAGATTTC 58.481 33.333 0.00 0.00 0.00 2.17
2938 3078 8.725405 AACTTTTGTAAAGGGTTTTGGTTATG 57.275 30.769 4.40 0.00 0.00 1.90
2939 3079 7.276658 ACTTTTGTAAAGGGTTTTGGTTATGG 58.723 34.615 4.40 0.00 0.00 2.74
2946 3094 2.821378 GGGTTTTGGTTATGGCGTAAGT 59.179 45.455 0.00 0.00 41.68 2.24
2977 3125 3.369892 GGAGACTCAAGTACCATGTGCAT 60.370 47.826 4.53 0.00 0.00 3.96
2993 3141 1.341209 TGCATCGTGAGACTTGTGAGT 59.659 47.619 0.00 0.00 46.97 3.41
3107 3255 8.884124 TCCATTGACCAGATTTAAGAATTCTT 57.116 30.769 23.53 23.53 39.85 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 5.358090 CGTTTTCTAGATTAGGGTTCCTCC 58.642 45.833 0.00 0.00 34.61 4.30
8 9 5.128335 TCCGTTTTCTAGATTAGGGTTCCTC 59.872 44.000 0.00 0.00 34.61 3.71
9 10 5.028131 TCCGTTTTCTAGATTAGGGTTCCT 58.972 41.667 0.00 0.00 37.71 3.36
10 11 5.349061 TCCGTTTTCTAGATTAGGGTTCC 57.651 43.478 0.00 0.00 0.00 3.62
11 12 7.605309 TCTTTTCCGTTTTCTAGATTAGGGTTC 59.395 37.037 0.00 0.00 0.00 3.62
12 13 7.455891 TCTTTTCCGTTTTCTAGATTAGGGTT 58.544 34.615 0.00 0.00 0.00 4.11
13 14 7.012661 TCTTTTCCGTTTTCTAGATTAGGGT 57.987 36.000 0.00 0.00 0.00 4.34
14 15 7.916914 TTCTTTTCCGTTTTCTAGATTAGGG 57.083 36.000 0.00 0.17 0.00 3.53
15 16 7.963465 GCTTTCTTTTCCGTTTTCTAGATTAGG 59.037 37.037 0.00 0.00 0.00 2.69
16 17 8.504005 TGCTTTCTTTTCCGTTTTCTAGATTAG 58.496 33.333 0.00 0.00 0.00 1.73
17 18 8.385898 TGCTTTCTTTTCCGTTTTCTAGATTA 57.614 30.769 0.00 0.00 0.00 1.75
18 19 7.272037 TGCTTTCTTTTCCGTTTTCTAGATT 57.728 32.000 0.00 0.00 0.00 2.40
19 20 6.877611 TGCTTTCTTTTCCGTTTTCTAGAT 57.122 33.333 0.00 0.00 0.00 1.98
20 21 6.687081 TTGCTTTCTTTTCCGTTTTCTAGA 57.313 33.333 0.00 0.00 0.00 2.43
21 22 7.749539 TTTTGCTTTCTTTTCCGTTTTCTAG 57.250 32.000 0.00 0.00 0.00 2.43
49 50 9.573133 CGAAATATTTTCTGCCTTTATGAGTTT 57.427 29.630 1.43 0.00 0.00 2.66
50 51 8.739972 ACGAAATATTTTCTGCCTTTATGAGTT 58.260 29.630 1.43 0.00 0.00 3.01
51 52 8.281212 ACGAAATATTTTCTGCCTTTATGAGT 57.719 30.769 1.43 0.00 0.00 3.41
220 226 1.679139 CTGGCCTTGTTGTGAGTTCA 58.321 50.000 3.32 0.00 0.00 3.18
224 230 0.179020 TGACCTGGCCTTGTTGTGAG 60.179 55.000 3.32 0.00 0.00 3.51
225 231 0.257328 TTGACCTGGCCTTGTTGTGA 59.743 50.000 3.32 0.00 0.00 3.58
228 234 0.754957 TGGTTGACCTGGCCTTGTTG 60.755 55.000 3.32 0.00 36.82 3.33
229 235 0.188342 ATGGTTGACCTGGCCTTGTT 59.812 50.000 3.32 0.00 36.82 2.83
230 236 0.540365 CATGGTTGACCTGGCCTTGT 60.540 55.000 3.32 0.00 36.82 3.16
248 254 3.047280 GTCAACCGTGGCGATGCA 61.047 61.111 0.00 0.00 0.00 3.96
261 267 4.840005 TGGTGCCACGCGTGTCAA 62.840 61.111 34.81 18.72 0.00 3.18
309 315 2.526110 GCCTTGAAAGGGTGGGGT 59.474 61.111 11.03 0.00 46.56 4.95
346 353 2.107950 TGGATGAATGAACCGTGGAC 57.892 50.000 0.00 0.00 0.00 4.02
347 354 3.278574 GAATGGATGAATGAACCGTGGA 58.721 45.455 0.00 0.00 0.00 4.02
504 527 2.731571 CGTGGGTCGTGGATGGGAT 61.732 63.158 0.00 0.00 34.52 3.85
694 717 0.325272 GTGTCCAGGAACCCCTTCTC 59.675 60.000 0.00 0.00 42.02 2.87
760 783 7.420800 TCAAGAAGAACAAGATCAAAAGCTTC 58.579 34.615 0.00 2.75 0.00 3.86
764 787 7.020010 CCGATCAAGAAGAACAAGATCAAAAG 58.980 38.462 0.00 0.00 35.91 2.27
766 789 6.147821 GTCCGATCAAGAAGAACAAGATCAAA 59.852 38.462 0.00 0.00 35.91 2.69
769 792 4.266502 CGTCCGATCAAGAAGAACAAGATC 59.733 45.833 0.00 0.00 33.52 2.75
770 793 4.082190 TCGTCCGATCAAGAAGAACAAGAT 60.082 41.667 0.00 0.00 0.00 2.40
775 798 1.921230 GCTCGTCCGATCAAGAAGAAC 59.079 52.381 0.00 0.00 0.00 3.01
778 801 0.867753 CCGCTCGTCCGATCAAGAAG 60.868 60.000 0.00 0.00 0.00 2.85
785 808 2.262303 GGATCTCCGCTCGTCCGAT 61.262 63.158 0.00 0.00 0.00 4.18
796 819 3.351794 AAAAAGGTTCTCCGGATCTCC 57.648 47.619 3.57 7.76 39.05 3.71
834 857 4.570930 AGGCTAAAAAGAAGAAGACGGAG 58.429 43.478 0.00 0.00 0.00 4.63
888 911 0.521735 GCTCTGTAAAAACAGCCCCG 59.478 55.000 0.60 0.00 37.63 5.73
932 955 1.276705 GAACAGGGGAGAGAGACCAAC 59.723 57.143 0.00 0.00 0.00 3.77
942 965 0.610687 AGCGAAGAAGAACAGGGGAG 59.389 55.000 0.00 0.00 0.00 4.30
1015 1046 5.860941 TTGCCAACCAGAACAAGATAAAA 57.139 34.783 0.00 0.00 0.00 1.52
1017 1048 4.220382 CCATTGCCAACCAGAACAAGATAA 59.780 41.667 0.00 0.00 0.00 1.75
1018 1049 3.763360 CCATTGCCAACCAGAACAAGATA 59.237 43.478 0.00 0.00 0.00 1.98
1024 1076 1.080569 CGCCATTGCCAACCAGAAC 60.081 57.895 0.00 0.00 0.00 3.01
1207 1259 2.043248 GAGGTGGAGGCGGAGGTA 60.043 66.667 0.00 0.00 0.00 3.08
1215 1267 2.521958 AAATGGCGACGAGGTGGAGG 62.522 60.000 0.00 0.00 0.00 4.30
1216 1268 0.673644 AAAATGGCGACGAGGTGGAG 60.674 55.000 0.00 0.00 0.00 3.86
1217 1269 0.672401 GAAAATGGCGACGAGGTGGA 60.672 55.000 0.00 0.00 0.00 4.02
1218 1270 1.794222 GAAAATGGCGACGAGGTGG 59.206 57.895 0.00 0.00 0.00 4.61
1219 1271 1.289109 ACGAAAATGGCGACGAGGTG 61.289 55.000 0.00 0.00 0.00 4.00
1245 1297 3.483869 GGGGCAGCGGAGAGGAAT 61.484 66.667 0.00 0.00 0.00 3.01
1253 1305 2.830370 GGATTCTTGGGGCAGCGG 60.830 66.667 0.00 0.00 0.00 5.52
1348 1400 1.226156 CTGCGAGAAGGACGACGAG 60.226 63.158 0.00 0.00 0.00 4.18
1526 1590 3.812019 GAGGAGCGACGCCGAGAA 61.812 66.667 17.79 0.00 38.22 2.87
1618 1691 4.603535 ACCCACTTGCCCCAGTGC 62.604 66.667 2.89 0.00 42.63 4.40
2317 2417 7.751732 TCACTAATACAATGAAGTACGTACGT 58.248 34.615 25.98 25.98 0.00 3.57
2329 2429 6.870965 GCTACCAGGAGATCACTAATACAATG 59.129 42.308 0.00 0.00 0.00 2.82
2446 2556 6.421501 GCTCAAGATAGATCACAATGAGACTG 59.578 42.308 15.41 0.00 35.91 3.51
2485 2598 8.040132 AGAGAAGTTTCTGGAACAAGATAGATG 58.960 37.037 0.98 0.00 40.84 2.90
2486 2599 8.144862 AGAGAAGTTTCTGGAACAAGATAGAT 57.855 34.615 0.98 0.00 40.84 1.98
2488 2601 7.610865 AGAGAGAAGTTTCTGGAACAAGATAG 58.389 38.462 0.98 0.00 40.84 2.08
2490 2603 6.269769 AGAGAGAGAAGTTTCTGGAACAAGAT 59.730 38.462 0.98 0.00 40.84 2.40
2492 2605 5.852827 AGAGAGAGAAGTTTCTGGAACAAG 58.147 41.667 0.98 0.00 40.84 3.16
2568 2705 8.901748 CCATTCTACTTTAAATGTCGTTTTGTG 58.098 33.333 0.00 0.00 32.20 3.33
2607 2747 1.379044 CTCCCCATTGTGACCAGCC 60.379 63.158 0.00 0.00 0.00 4.85
2608 2748 1.379044 CCTCCCCATTGTGACCAGC 60.379 63.158 0.00 0.00 0.00 4.85
2609 2749 0.698238 TTCCTCCCCATTGTGACCAG 59.302 55.000 0.00 0.00 0.00 4.00
2611 2751 0.698818 AGTTCCTCCCCATTGTGACC 59.301 55.000 0.00 0.00 0.00 4.02
2612 2752 2.586648 AAGTTCCTCCCCATTGTGAC 57.413 50.000 0.00 0.00 0.00 3.67
2613 2753 2.576191 CCTAAGTTCCTCCCCATTGTGA 59.424 50.000 0.00 0.00 0.00 3.58
2614 2754 2.576191 TCCTAAGTTCCTCCCCATTGTG 59.424 50.000 0.00 0.00 0.00 3.33
2616 2756 2.846827 ACTCCTAAGTTCCTCCCCATTG 59.153 50.000 0.00 0.00 28.74 2.82
2620 2760 3.447950 TGTTACTCCTAAGTTCCTCCCC 58.552 50.000 0.00 0.00 36.92 4.81
2621 2761 4.715297 TGATGTTACTCCTAAGTTCCTCCC 59.285 45.833 0.00 0.00 36.92 4.30
2622 2762 5.187186 TGTGATGTTACTCCTAAGTTCCTCC 59.813 44.000 0.00 0.00 36.92 4.30
2624 2764 5.542635 TGTGTGATGTTACTCCTAAGTTCCT 59.457 40.000 0.00 0.00 36.92 3.36
2626 2766 6.456501 AGTGTGTGATGTTACTCCTAAGTTC 58.543 40.000 0.00 0.00 36.92 3.01
2628 2768 6.026947 GAGTGTGTGATGTTACTCCTAAGT 57.973 41.667 0.00 0.00 39.66 2.24
2634 2774 6.163476 TGTATTGGAGTGTGTGATGTTACTC 58.837 40.000 0.00 0.00 38.98 2.59
2635 2775 6.109156 TGTATTGGAGTGTGTGATGTTACT 57.891 37.500 0.00 0.00 0.00 2.24
2636 2776 6.426937 AGTTGTATTGGAGTGTGTGATGTTAC 59.573 38.462 0.00 0.00 0.00 2.50
2637 2777 6.530120 AGTTGTATTGGAGTGTGTGATGTTA 58.470 36.000 0.00 0.00 0.00 2.41
2638 2778 5.376625 AGTTGTATTGGAGTGTGTGATGTT 58.623 37.500 0.00 0.00 0.00 2.71
2639 2779 4.973168 AGTTGTATTGGAGTGTGTGATGT 58.027 39.130 0.00 0.00 0.00 3.06
2640 2780 5.947228 AAGTTGTATTGGAGTGTGTGATG 57.053 39.130 0.00 0.00 0.00 3.07
2641 2781 5.278463 GCAAAGTTGTATTGGAGTGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
2642 2782 4.036262 GCAAAGTTGTATTGGAGTGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
2643 2783 4.036734 AGCAAAGTTGTATTGGAGTGTGTG 59.963 41.667 0.00 0.00 0.00 3.82
2644 2784 4.207165 AGCAAAGTTGTATTGGAGTGTGT 58.793 39.130 0.00 0.00 0.00 3.72
2645 2785 4.836125 AGCAAAGTTGTATTGGAGTGTG 57.164 40.909 0.00 0.00 0.00 3.82
2646 2786 6.490040 ACATAAGCAAAGTTGTATTGGAGTGT 59.510 34.615 0.00 0.00 0.00 3.55
2647 2787 6.803320 CACATAAGCAAAGTTGTATTGGAGTG 59.197 38.462 0.00 0.00 0.00 3.51
2648 2788 6.071952 CCACATAAGCAAAGTTGTATTGGAGT 60.072 38.462 0.00 0.00 0.00 3.85
2649 2789 6.324819 CCACATAAGCAAAGTTGTATTGGAG 58.675 40.000 0.00 0.00 0.00 3.86
2650 2790 5.336372 GCCACATAAGCAAAGTTGTATTGGA 60.336 40.000 0.00 0.00 0.00 3.53
2651 2791 4.864247 GCCACATAAGCAAAGTTGTATTGG 59.136 41.667 0.00 0.00 0.00 3.16
2652 2792 5.345741 GTGCCACATAAGCAAAGTTGTATTG 59.654 40.000 0.00 0.00 43.02 1.90
2653 2793 5.010516 TGTGCCACATAAGCAAAGTTGTATT 59.989 36.000 0.00 0.00 43.02 1.89
2654 2794 4.522405 TGTGCCACATAAGCAAAGTTGTAT 59.478 37.500 0.00 0.00 43.02 2.29
2655 2795 3.885901 TGTGCCACATAAGCAAAGTTGTA 59.114 39.130 0.00 0.00 43.02 2.41
2656 2796 2.692557 TGTGCCACATAAGCAAAGTTGT 59.307 40.909 0.00 0.00 43.02 3.32
2657 2797 3.367992 TGTGCCACATAAGCAAAGTTG 57.632 42.857 0.00 0.00 43.02 3.16
2658 2798 5.920193 ATATGTGCCACATAAGCAAAGTT 57.080 34.783 20.57 0.00 43.50 2.66
2659 2799 5.920193 AATATGTGCCACATAAGCAAAGT 57.080 34.783 20.57 0.54 43.50 2.66
2660 2800 8.757789 CATTAAATATGTGCCACATAAGCAAAG 58.242 33.333 20.57 8.50 43.50 2.77
2661 2801 8.473219 TCATTAAATATGTGCCACATAAGCAAA 58.527 29.630 20.57 12.83 43.50 3.68
2662 2802 8.005192 TCATTAAATATGTGCCACATAAGCAA 57.995 30.769 20.57 14.07 43.50 3.91
2663 2803 7.579761 TCATTAAATATGTGCCACATAAGCA 57.420 32.000 20.57 6.59 43.50 3.91
2664 2804 8.352201 TCTTCATTAAATATGTGCCACATAAGC 58.648 33.333 20.57 0.00 43.50 3.09
2665 2805 9.888878 CTCTTCATTAAATATGTGCCACATAAG 57.111 33.333 20.57 12.73 43.50 1.73
2666 2806 9.625747 TCTCTTCATTAAATATGTGCCACATAA 57.374 29.630 20.57 7.37 43.50 1.90
2667 2807 9.276590 CTCTCTTCATTAAATATGTGCCACATA 57.723 33.333 19.16 19.16 44.29 2.29
2668 2808 7.994911 TCTCTCTTCATTAAATATGTGCCACAT 59.005 33.333 15.69 15.69 42.35 3.21
2669 2809 7.337938 TCTCTCTTCATTAAATATGTGCCACA 58.662 34.615 0.00 0.00 0.00 4.17
2670 2810 7.041508 CCTCTCTCTTCATTAAATATGTGCCAC 60.042 40.741 0.00 0.00 0.00 5.01
2671 2811 6.994496 CCTCTCTCTTCATTAAATATGTGCCA 59.006 38.462 0.00 0.00 0.00 4.92
2672 2812 6.995091 ACCTCTCTCTTCATTAAATATGTGCC 59.005 38.462 0.00 0.00 0.00 5.01
2673 2813 7.519649 GCACCTCTCTCTTCATTAAATATGTGC 60.520 40.741 0.00 0.00 35.67 4.57
2674 2814 7.714377 AGCACCTCTCTCTTCATTAAATATGTG 59.286 37.037 0.00 0.00 0.00 3.21
2675 2815 7.800092 AGCACCTCTCTCTTCATTAAATATGT 58.200 34.615 0.00 0.00 0.00 2.29
2676 2816 8.557864 CAAGCACCTCTCTCTTCATTAAATATG 58.442 37.037 0.00 0.00 0.00 1.78
2677 2817 8.270744 ACAAGCACCTCTCTCTTCATTAAATAT 58.729 33.333 0.00 0.00 0.00 1.28
2678 2818 7.550551 CACAAGCACCTCTCTCTTCATTAAATA 59.449 37.037 0.00 0.00 0.00 1.40
2679 2819 6.373774 CACAAGCACCTCTCTCTTCATTAAAT 59.626 38.462 0.00 0.00 0.00 1.40
2680 2820 5.702670 CACAAGCACCTCTCTCTTCATTAAA 59.297 40.000 0.00 0.00 0.00 1.52
2681 2821 5.240891 CACAAGCACCTCTCTCTTCATTAA 58.759 41.667 0.00 0.00 0.00 1.40
2682 2822 4.323028 CCACAAGCACCTCTCTCTTCATTA 60.323 45.833 0.00 0.00 0.00 1.90
2683 2823 3.558746 CCACAAGCACCTCTCTCTTCATT 60.559 47.826 0.00 0.00 0.00 2.57
2684 2824 2.027377 CCACAAGCACCTCTCTCTTCAT 60.027 50.000 0.00 0.00 0.00 2.57
2685 2825 1.345741 CCACAAGCACCTCTCTCTTCA 59.654 52.381 0.00 0.00 0.00 3.02
2686 2826 1.346068 ACCACAAGCACCTCTCTCTTC 59.654 52.381 0.00 0.00 0.00 2.87
2687 2827 1.428869 ACCACAAGCACCTCTCTCTT 58.571 50.000 0.00 0.00 0.00 2.85
2688 2828 2.300437 GTTACCACAAGCACCTCTCTCT 59.700 50.000 0.00 0.00 0.00 3.10
2689 2829 2.300437 AGTTACCACAAGCACCTCTCTC 59.700 50.000 0.00 0.00 0.00 3.20
2690 2830 2.330216 AGTTACCACAAGCACCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
2691 2831 2.841442 AGTTACCACAAGCACCTCTC 57.159 50.000 0.00 0.00 0.00 3.20
2692 2832 2.567615 CCTAGTTACCACAAGCACCTCT 59.432 50.000 0.00 0.00 0.00 3.69
2693 2833 2.302157 ACCTAGTTACCACAAGCACCTC 59.698 50.000 0.00 0.00 0.00 3.85
2694 2834 2.335933 ACCTAGTTACCACAAGCACCT 58.664 47.619 0.00 0.00 0.00 4.00
2695 2835 2.853235 ACCTAGTTACCACAAGCACC 57.147 50.000 0.00 0.00 0.00 5.01
2696 2836 4.891260 ACTTACCTAGTTACCACAAGCAC 58.109 43.478 0.00 0.00 31.29 4.40
2697 2837 5.556006 AACTTACCTAGTTACCACAAGCA 57.444 39.130 0.00 0.00 45.22 3.91
2706 2846 6.663093 TGATGTTCCGGTAACTTACCTAGTTA 59.337 38.462 14.81 0.00 45.22 2.24
2708 2848 5.018809 TGATGTTCCGGTAACTTACCTAGT 58.981 41.667 14.81 0.00 46.81 2.57
2709 2849 5.105635 TGTGATGTTCCGGTAACTTACCTAG 60.106 44.000 14.81 7.30 46.81 3.02
2710 2850 4.771577 TGTGATGTTCCGGTAACTTACCTA 59.228 41.667 14.81 1.92 46.81 3.08
2711 2851 3.579586 TGTGATGTTCCGGTAACTTACCT 59.420 43.478 14.81 0.00 46.81 3.08
2712 2852 3.681417 GTGTGATGTTCCGGTAACTTACC 59.319 47.826 0.00 7.82 45.52 2.85
2713 2853 4.151157 GTGTGTGATGTTCCGGTAACTTAC 59.849 45.833 0.00 6.53 38.99 2.34
2714 2854 4.039488 AGTGTGTGATGTTCCGGTAACTTA 59.961 41.667 0.00 0.00 38.99 2.24
2715 2855 3.135994 GTGTGTGATGTTCCGGTAACTT 58.864 45.455 0.00 3.15 38.99 2.66
2716 2856 2.367567 AGTGTGTGATGTTCCGGTAACT 59.632 45.455 0.00 0.00 38.99 2.24
2717 2857 2.735134 GAGTGTGTGATGTTCCGGTAAC 59.265 50.000 0.00 5.56 38.67 2.50
2718 2858 2.289195 GGAGTGTGTGATGTTCCGGTAA 60.289 50.000 0.00 0.00 0.00 2.85
2719 2859 1.274167 GGAGTGTGTGATGTTCCGGTA 59.726 52.381 0.00 0.00 0.00 4.02
2720 2860 0.034896 GGAGTGTGTGATGTTCCGGT 59.965 55.000 0.00 0.00 0.00 5.28
2721 2861 0.034756 TGGAGTGTGTGATGTTCCGG 59.965 55.000 0.00 0.00 0.00 5.14
2722 2862 1.877637 TTGGAGTGTGTGATGTTCCG 58.122 50.000 0.00 0.00 0.00 4.30
2723 2863 4.647424 TTTTTGGAGTGTGTGATGTTCC 57.353 40.909 0.00 0.00 0.00 3.62
2749 2889 9.639601 CGATGCATTTATTAGGTTATAGACTCA 57.360 33.333 0.00 0.00 0.00 3.41
2750 2890 9.640963 ACGATGCATTTATTAGGTTATAGACTC 57.359 33.333 0.00 0.00 0.00 3.36
2751 2891 9.998106 AACGATGCATTTATTAGGTTATAGACT 57.002 29.630 0.00 0.00 0.00 3.24
2771 2911 5.043248 TCTATGTAGTGTCATGCAACGATG 58.957 41.667 0.00 0.00 0.00 3.84
2772 2912 5.262588 TCTATGTAGTGTCATGCAACGAT 57.737 39.130 0.00 0.00 0.00 3.73
2773 2913 4.712122 TCTATGTAGTGTCATGCAACGA 57.288 40.909 0.00 0.00 0.00 3.85
2774 2914 4.805719 ACATCTATGTAGTGTCATGCAACG 59.194 41.667 0.00 0.00 39.68 4.10
2775 2915 6.238211 GGAACATCTATGTAGTGTCATGCAAC 60.238 42.308 0.00 0.00 40.80 4.17
2776 2916 5.817296 GGAACATCTATGTAGTGTCATGCAA 59.183 40.000 0.00 0.00 40.80 4.08
2777 2917 5.129320 AGGAACATCTATGTAGTGTCATGCA 59.871 40.000 0.00 0.00 40.80 3.96
2778 2918 5.605534 AGGAACATCTATGTAGTGTCATGC 58.394 41.667 0.00 0.00 40.80 4.06
2779 2919 8.031864 GGATAGGAACATCTATGTAGTGTCATG 58.968 40.741 0.00 0.00 40.80 3.07
2780 2920 7.730332 TGGATAGGAACATCTATGTAGTGTCAT 59.270 37.037 0.00 0.00 40.80 3.06
2781 2921 7.014326 GTGGATAGGAACATCTATGTAGTGTCA 59.986 40.741 0.00 0.00 40.80 3.58
2782 2922 7.231722 AGTGGATAGGAACATCTATGTAGTGTC 59.768 40.741 0.00 0.00 40.80 3.67
2783 2923 7.069986 AGTGGATAGGAACATCTATGTAGTGT 58.930 38.462 0.00 0.00 40.80 3.55
2784 2924 7.531857 AGTGGATAGGAACATCTATGTAGTG 57.468 40.000 0.00 0.00 40.80 2.74
2785 2925 9.249053 CATAGTGGATAGGAACATCTATGTAGT 57.751 37.037 0.00 0.00 40.80 2.73
2786 2926 8.690884 CCATAGTGGATAGGAACATCTATGTAG 58.309 40.741 0.00 0.00 40.96 2.74
2787 2927 8.398743 TCCATAGTGGATAGGAACATCTATGTA 58.601 37.037 0.00 0.00 42.67 2.29
2788 2928 7.248976 TCCATAGTGGATAGGAACATCTATGT 58.751 38.462 0.00 0.00 42.67 2.29
2789 2929 7.724490 TCCATAGTGGATAGGAACATCTATG 57.276 40.000 0.00 0.00 42.67 2.23
2803 2943 6.919158 ACTATGTTACTACCTCCATAGTGGA 58.081 40.000 9.63 0.00 44.96 4.02
2804 2944 7.005296 AGACTATGTTACTACCTCCATAGTGG 58.995 42.308 14.01 0.00 46.02 4.00
2805 2945 9.221933 CTAGACTATGTTACTACCTCCATAGTG 57.778 40.741 14.01 0.00 46.02 2.74
2807 2947 7.830201 CCCTAGACTATGTTACTACCTCCATAG 59.170 44.444 0.00 0.00 41.50 2.23
2808 2948 7.518653 TCCCTAGACTATGTTACTACCTCCATA 59.481 40.741 0.00 0.00 0.00 2.74
2809 2949 6.334774 TCCCTAGACTATGTTACTACCTCCAT 59.665 42.308 0.00 0.00 0.00 3.41
2810 2950 5.673574 TCCCTAGACTATGTTACTACCTCCA 59.326 44.000 0.00 0.00 0.00 3.86
2811 2951 6.198237 TCCCTAGACTATGTTACTACCTCC 57.802 45.833 0.00 0.00 0.00 4.30
2812 2952 7.229106 CACTTCCCTAGACTATGTTACTACCTC 59.771 44.444 0.00 0.00 0.00 3.85
2813 2953 7.061688 CACTTCCCTAGACTATGTTACTACCT 58.938 42.308 0.00 0.00 0.00 3.08
2814 2954 6.832900 ACACTTCCCTAGACTATGTTACTACC 59.167 42.308 0.00 0.00 0.00 3.18
2815 2955 7.338957 ACACACTTCCCTAGACTATGTTACTAC 59.661 40.741 0.00 0.00 0.00 2.73
2816 2956 7.408543 ACACACTTCCCTAGACTATGTTACTA 58.591 38.462 0.00 0.00 0.00 1.82
2817 2957 6.254522 ACACACTTCCCTAGACTATGTTACT 58.745 40.000 0.00 0.00 0.00 2.24
2818 2958 6.527057 ACACACTTCCCTAGACTATGTTAC 57.473 41.667 0.00 0.00 0.00 2.50
2819 2959 7.892241 ACTTACACACTTCCCTAGACTATGTTA 59.108 37.037 0.00 0.00 0.00 2.41
2820 2960 6.724905 ACTTACACACTTCCCTAGACTATGTT 59.275 38.462 0.00 0.00 0.00 2.71
2821 2961 6.254522 ACTTACACACTTCCCTAGACTATGT 58.745 40.000 0.00 0.00 0.00 2.29
2822 2962 6.777213 ACTTACACACTTCCCTAGACTATG 57.223 41.667 0.00 0.00 0.00 2.23
2823 2963 8.114743 AGTAACTTACACACTTCCCTAGACTAT 58.885 37.037 1.79 0.00 0.00 2.12
2824 2964 7.465116 AGTAACTTACACACTTCCCTAGACTA 58.535 38.462 1.79 0.00 0.00 2.59
2825 2965 6.313324 AGTAACTTACACACTTCCCTAGACT 58.687 40.000 1.79 0.00 0.00 3.24
2826 2966 6.587206 AGTAACTTACACACTTCCCTAGAC 57.413 41.667 1.79 0.00 0.00 2.59
2827 2967 6.376581 GCTAGTAACTTACACACTTCCCTAGA 59.623 42.308 1.79 0.00 0.00 2.43
2828 2968 6.377712 AGCTAGTAACTTACACACTTCCCTAG 59.622 42.308 1.79 0.00 0.00 3.02
2829 2969 6.251471 AGCTAGTAACTTACACACTTCCCTA 58.749 40.000 1.79 0.00 0.00 3.53
2830 2970 5.085219 AGCTAGTAACTTACACACTTCCCT 58.915 41.667 1.79 0.00 0.00 4.20
2831 2971 5.402997 AGCTAGTAACTTACACACTTCCC 57.597 43.478 1.79 0.00 0.00 3.97
2832 2972 8.033626 ACATAAGCTAGTAACTTACACACTTCC 58.966 37.037 1.79 0.00 32.67 3.46
2833 2973 8.983307 ACATAAGCTAGTAACTTACACACTTC 57.017 34.615 1.79 0.00 32.67 3.01
2834 2974 9.420551 GAACATAAGCTAGTAACTTACACACTT 57.579 33.333 1.79 4.31 32.67 3.16
2835 2975 8.804204 AGAACATAAGCTAGTAACTTACACACT 58.196 33.333 1.79 0.00 32.67 3.55
2836 2976 8.983307 AGAACATAAGCTAGTAACTTACACAC 57.017 34.615 1.79 0.00 32.67 3.82
2837 2977 9.419297 CAAGAACATAAGCTAGTAACTTACACA 57.581 33.333 1.79 0.00 32.67 3.72
2838 2978 8.381387 GCAAGAACATAAGCTAGTAACTTACAC 58.619 37.037 1.79 0.00 32.67 2.90
2839 2979 7.548075 GGCAAGAACATAAGCTAGTAACTTACA 59.452 37.037 1.79 0.00 32.67 2.41
2840 2980 7.011202 GGGCAAGAACATAAGCTAGTAACTTAC 59.989 40.741 0.00 0.00 32.67 2.34
2841 2981 7.046033 GGGCAAGAACATAAGCTAGTAACTTA 58.954 38.462 0.00 0.00 34.29 2.24
2842 2982 5.880887 GGGCAAGAACATAAGCTAGTAACTT 59.119 40.000 0.00 0.00 0.00 2.66
2843 2983 5.045869 TGGGCAAGAACATAAGCTAGTAACT 60.046 40.000 0.00 0.00 0.00 2.24
2844 2984 5.183228 TGGGCAAGAACATAAGCTAGTAAC 58.817 41.667 0.00 0.00 0.00 2.50
2845 2985 5.429681 TGGGCAAGAACATAAGCTAGTAA 57.570 39.130 0.00 0.00 0.00 2.24
2846 2986 5.630415 ATGGGCAAGAACATAAGCTAGTA 57.370 39.130 0.00 0.00 0.00 1.82
2847 2987 4.510167 ATGGGCAAGAACATAAGCTAGT 57.490 40.909 0.00 0.00 0.00 2.57
2848 2988 4.641989 ACAATGGGCAAGAACATAAGCTAG 59.358 41.667 0.00 0.00 0.00 3.42
2849 2989 4.398988 CACAATGGGCAAGAACATAAGCTA 59.601 41.667 0.00 0.00 0.00 3.32
2850 2990 3.194116 CACAATGGGCAAGAACATAAGCT 59.806 43.478 0.00 0.00 0.00 3.74
2851 2991 3.193267 TCACAATGGGCAAGAACATAAGC 59.807 43.478 0.00 0.00 0.00 3.09
2852 2992 4.380867 GGTCACAATGGGCAAGAACATAAG 60.381 45.833 0.00 0.00 0.00 1.73
2853 2993 3.509575 GGTCACAATGGGCAAGAACATAA 59.490 43.478 0.00 0.00 0.00 1.90
2854 2994 3.088532 GGTCACAATGGGCAAGAACATA 58.911 45.455 0.00 0.00 0.00 2.29
2855 2995 1.895131 GGTCACAATGGGCAAGAACAT 59.105 47.619 0.00 0.00 0.00 2.71
2856 2996 1.327303 GGTCACAATGGGCAAGAACA 58.673 50.000 0.00 0.00 0.00 3.18
2857 2997 1.270550 CTGGTCACAATGGGCAAGAAC 59.729 52.381 0.00 0.00 0.00 3.01
2858 2998 1.619654 CTGGTCACAATGGGCAAGAA 58.380 50.000 0.00 0.00 0.00 2.52
2859 2999 0.895100 GCTGGTCACAATGGGCAAGA 60.895 55.000 0.00 0.00 0.00 3.02
2860 3000 1.588082 GCTGGTCACAATGGGCAAG 59.412 57.895 0.00 0.00 0.00 4.01
2861 3001 1.907807 GGCTGGTCACAATGGGCAA 60.908 57.895 0.00 0.00 0.00 4.52
2862 3002 1.496444 TAGGCTGGTCACAATGGGCA 61.496 55.000 0.00 0.00 0.00 5.36
2863 3003 0.323360 TTAGGCTGGTCACAATGGGC 60.323 55.000 0.00 0.00 0.00 5.36
2864 3004 1.271871 TGTTAGGCTGGTCACAATGGG 60.272 52.381 0.00 0.00 0.00 4.00
2865 3005 2.198827 TGTTAGGCTGGTCACAATGG 57.801 50.000 0.00 0.00 0.00 3.16
2866 3006 4.012374 AGAATGTTAGGCTGGTCACAATG 58.988 43.478 0.00 0.00 0.00 2.82
2867 3007 4.307032 AGAATGTTAGGCTGGTCACAAT 57.693 40.909 0.00 0.00 0.00 2.71
2868 3008 3.788227 AGAATGTTAGGCTGGTCACAA 57.212 42.857 0.00 0.00 0.00 3.33
2869 3009 3.788227 AAGAATGTTAGGCTGGTCACA 57.212 42.857 0.00 0.00 0.00 3.58
2870 3010 4.762251 AGAAAAGAATGTTAGGCTGGTCAC 59.238 41.667 0.00 0.00 0.00 3.67
2871 3011 4.761739 CAGAAAAGAATGTTAGGCTGGTCA 59.238 41.667 0.00 0.00 0.00 4.02
2872 3012 5.003804 TCAGAAAAGAATGTTAGGCTGGTC 58.996 41.667 0.00 0.00 0.00 4.02
2873 3013 4.985538 TCAGAAAAGAATGTTAGGCTGGT 58.014 39.130 0.00 0.00 0.00 4.00
2874 3014 5.707298 TCTTCAGAAAAGAATGTTAGGCTGG 59.293 40.000 0.00 0.00 0.00 4.85
2875 3015 6.808008 TCTTCAGAAAAGAATGTTAGGCTG 57.192 37.500 0.00 0.00 0.00 4.85
2876 3016 8.414629 AAATCTTCAGAAAAGAATGTTAGGCT 57.585 30.769 0.00 0.00 0.00 4.58
2877 3017 8.518702 AGAAATCTTCAGAAAAGAATGTTAGGC 58.481 33.333 0.00 0.00 0.00 3.93
2922 3062 2.321719 ACGCCATAACCAAAACCCTTT 58.678 42.857 0.00 0.00 0.00 3.11
2938 3078 2.433239 TCTCCCTTCCATAACTTACGCC 59.567 50.000 0.00 0.00 0.00 5.68
2939 3079 3.132467 AGTCTCCCTTCCATAACTTACGC 59.868 47.826 0.00 0.00 0.00 4.42
2946 3094 4.715297 GGTACTTGAGTCTCCCTTCCATAA 59.285 45.833 0.00 0.00 0.00 1.90
2977 3125 3.119280 TGAAACACTCACAAGTCTCACGA 60.119 43.478 0.00 0.00 31.71 4.35
2993 3141 1.002624 GCCCATCTCCGGTGAAACA 60.003 57.895 10.77 0.00 39.98 2.83
3070 3218 2.614057 GGTCAATGGAATAGCTTGGTCG 59.386 50.000 0.00 0.00 0.00 4.79
3075 3223 8.055181 TCTTAAATCTGGTCAATGGAATAGCTT 58.945 33.333 0.00 0.00 0.00 3.74
3107 3255 3.427909 GCGAACTGAAATGCATGATCCAA 60.428 43.478 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.