Multiple sequence alignment - TraesCS7A01G180300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G180300 chr7A 100.000 2492 0 0 1 2492 134558837 134556346 0.000000e+00 4602.0
1 TraesCS7A01G180300 chr7A 96.907 582 16 2 1850 2430 669437550 669436970 0.000000e+00 974.0
2 TraesCS7A01G180300 chr7A 96.475 539 18 1 1 538 522123889 522124427 0.000000e+00 889.0
3 TraesCS7A01G180300 chr7A 95.795 547 20 2 1 546 458642417 458642961 0.000000e+00 880.0
4 TraesCS7A01G180300 chr7A 98.701 77 1 0 2416 2492 669436364 669436288 1.200000e-28 137.0
5 TraesCS7A01G180300 chr5A 94.751 762 39 1 633 1393 36009250 36010011 0.000000e+00 1184.0
6 TraesCS7A01G180300 chr5A 96.468 538 19 0 1 538 35583063 35582526 0.000000e+00 889.0
7 TraesCS7A01G180300 chr5A 96.475 539 18 1 1 538 684625027 684624489 0.000000e+00 889.0
8 TraesCS7A01G180300 chr5A 95.788 546 21 1 1 546 270949383 270948840 0.000000e+00 880.0
9 TraesCS7A01G180300 chr5A 84.921 252 26 6 1851 2092 517905602 517905851 6.880000e-61 244.0
10 TraesCS7A01G180300 chr6D 94.737 760 38 1 636 1393 45908859 45909618 0.000000e+00 1181.0
11 TraesCS7A01G180300 chr4D 94.634 764 38 2 635 1396 71374510 71373748 0.000000e+00 1181.0
12 TraesCS7A01G180300 chr7D 94.241 764 42 1 635 1396 511332626 511331863 0.000000e+00 1166.0
13 TraesCS7A01G180300 chr7D 93.963 762 43 2 637 1396 76537614 76536854 0.000000e+00 1149.0
14 TraesCS7A01G180300 chr7D 93.939 759 44 2 635 1393 596583136 596583892 0.000000e+00 1146.0
15 TraesCS7A01G180300 chr7D 90.220 409 27 3 1451 1847 135436306 135435899 2.840000e-144 521.0
16 TraesCS7A01G180300 chr2A 94.335 759 43 0 635 1393 651990442 651991200 0.000000e+00 1164.0
17 TraesCS7A01G180300 chr2A 95.971 546 20 1 1 546 694440387 694440930 0.000000e+00 885.0
18 TraesCS7A01G180300 chr2D 94.094 762 43 1 634 1393 534389382 534390143 0.000000e+00 1157.0
19 TraesCS7A01G180300 chr2D 94.886 528 23 3 1969 2492 620785859 620786386 0.000000e+00 822.0
20 TraesCS7A01G180300 chr2D 95.161 62 3 0 1878 1939 620785799 620785860 5.670000e-17 99.0
21 TraesCS7A01G180300 chr4A 94.071 759 45 0 635 1393 25787063 25787821 0.000000e+00 1153.0
22 TraesCS7A01G180300 chr4A 93.686 586 29 5 1 583 733732869 733732289 0.000000e+00 870.0
23 TraesCS7A01G180300 chr4A 88.845 251 19 4 1845 2092 629954861 629955105 1.450000e-77 300.0
24 TraesCS7A01G180300 chr4A 88.845 251 19 4 1845 2092 629963819 629964063 1.450000e-77 300.0
25 TraesCS7A01G180300 chr4A 91.667 180 11 4 2156 2332 629955415 629955237 1.910000e-61 246.0
26 TraesCS7A01G180300 chr4A 91.667 180 11 4 2156 2332 629964373 629964195 1.910000e-61 246.0
27 TraesCS7A01G180300 chr4A 93.571 140 9 0 2329 2468 629955102 629955241 2.510000e-50 209.0
28 TraesCS7A01G180300 chr4A 93.571 140 9 0 2329 2468 629964060 629964199 2.510000e-50 209.0
29 TraesCS7A01G180300 chr3A 98.068 621 12 0 1872 2492 712628543 712627923 0.000000e+00 1081.0
30 TraesCS7A01G180300 chr3A 93.322 584 34 5 1 581 531398220 531398801 0.000000e+00 857.0
31 TraesCS7A01G180300 chr1D 96.468 538 19 0 1 538 264236134 264235597 0.000000e+00 889.0
32 TraesCS7A01G180300 chr4B 92.742 248 16 2 2089 2335 270793352 270793106 8.480000e-95 357.0
33 TraesCS7A01G180300 chr4B 92.339 248 17 2 2089 2335 270607343 270607097 3.940000e-93 351.0
34 TraesCS7A01G180300 chr4B 96.450 169 6 0 1922 2090 270606800 270606968 1.890000e-71 279.0
35 TraesCS7A01G180300 chr4B 95.322 171 8 0 1922 2092 270784233 270784403 3.160000e-69 272.0
36 TraesCS7A01G180300 chr4B 92.361 144 7 2 2327 2468 270606963 270607104 4.200000e-48 202.0
37 TraesCS7A01G180300 chr4B 91.473 129 8 2 2340 2468 270792988 270793113 9.160000e-40 174.0
38 TraesCS7A01G180300 chr4B 100.000 29 0 0 2464 2492 270607340 270607368 1.000000e-03 54.7
39 TraesCS7A01G180300 chr4B 100.000 29 0 0 2464 2492 270793349 270793377 1.000000e-03 54.7
40 TraesCS7A01G180300 chrUn 88.845 251 19 4 1845 2092 276675573 276675329 1.450000e-77 300.0
41 TraesCS7A01G180300 chrUn 91.667 180 11 4 2156 2332 276675019 276675197 1.910000e-61 246.0
42 TraesCS7A01G180300 chrUn 93.571 140 9 0 2329 2468 276675332 276675193 2.510000e-50 209.0
43 TraesCS7A01G180300 chr7B 91.111 90 6 2 1758 1847 97374841 97374754 1.210000e-23 121.0
44 TraesCS7A01G180300 chr1A 88.372 86 7 1 2009 2091 333529142 333529227 1.580000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G180300 chr7A 134556346 134558837 2491 True 4602.0 4602 100.0000 1 2492 1 chr7A.!!$R1 2491
1 TraesCS7A01G180300 chr7A 522123889 522124427 538 False 889.0 889 96.4750 1 538 1 chr7A.!!$F2 537
2 TraesCS7A01G180300 chr7A 458642417 458642961 544 False 880.0 880 95.7950 1 546 1 chr7A.!!$F1 545
3 TraesCS7A01G180300 chr7A 669436288 669437550 1262 True 555.5 974 97.8040 1850 2492 2 chr7A.!!$R2 642
4 TraesCS7A01G180300 chr5A 36009250 36010011 761 False 1184.0 1184 94.7510 633 1393 1 chr5A.!!$F1 760
5 TraesCS7A01G180300 chr5A 35582526 35583063 537 True 889.0 889 96.4680 1 538 1 chr5A.!!$R1 537
6 TraesCS7A01G180300 chr5A 684624489 684625027 538 True 889.0 889 96.4750 1 538 1 chr5A.!!$R3 537
7 TraesCS7A01G180300 chr5A 270948840 270949383 543 True 880.0 880 95.7880 1 546 1 chr5A.!!$R2 545
8 TraesCS7A01G180300 chr6D 45908859 45909618 759 False 1181.0 1181 94.7370 636 1393 1 chr6D.!!$F1 757
9 TraesCS7A01G180300 chr4D 71373748 71374510 762 True 1181.0 1181 94.6340 635 1396 1 chr4D.!!$R1 761
10 TraesCS7A01G180300 chr7D 511331863 511332626 763 True 1166.0 1166 94.2410 635 1396 1 chr7D.!!$R3 761
11 TraesCS7A01G180300 chr7D 76536854 76537614 760 True 1149.0 1149 93.9630 637 1396 1 chr7D.!!$R1 759
12 TraesCS7A01G180300 chr7D 596583136 596583892 756 False 1146.0 1146 93.9390 635 1393 1 chr7D.!!$F1 758
13 TraesCS7A01G180300 chr2A 651990442 651991200 758 False 1164.0 1164 94.3350 635 1393 1 chr2A.!!$F1 758
14 TraesCS7A01G180300 chr2A 694440387 694440930 543 False 885.0 885 95.9710 1 546 1 chr2A.!!$F2 545
15 TraesCS7A01G180300 chr2D 534389382 534390143 761 False 1157.0 1157 94.0940 634 1393 1 chr2D.!!$F1 759
16 TraesCS7A01G180300 chr2D 620785799 620786386 587 False 460.5 822 95.0235 1878 2492 2 chr2D.!!$F2 614
17 TraesCS7A01G180300 chr4A 25787063 25787821 758 False 1153.0 1153 94.0710 635 1393 1 chr4A.!!$F1 758
18 TraesCS7A01G180300 chr4A 733732289 733732869 580 True 870.0 870 93.6860 1 583 1 chr4A.!!$R3 582
19 TraesCS7A01G180300 chr3A 712627923 712628543 620 True 1081.0 1081 98.0680 1872 2492 1 chr3A.!!$R1 620
20 TraesCS7A01G180300 chr3A 531398220 531398801 581 False 857.0 857 93.3220 1 581 1 chr3A.!!$F1 580
21 TraesCS7A01G180300 chr1D 264235597 264236134 537 True 889.0 889 96.4680 1 538 1 chr1D.!!$R1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 570 0.566176 CCCCTCCCCCTCTACACATA 59.434 60.0 0.0 0.0 0.0 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 1615 0.034896 AAATCCGTCCGAAGCTGTGT 59.965 50.0 0.0 0.0 0.0 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
125 126 4.336280 GAGTTTGTAAGGGCAAGGAGATT 58.664 43.478 0.00 0.00 0.00 2.40
401 403 3.383761 GCAAGTTGCATGCTTTACTTGT 58.616 40.909 34.47 17.49 45.68 3.16
409 411 1.593196 TGCTTTACTTGTCGCTGCTT 58.407 45.000 0.00 0.00 0.00 3.91
430 432 6.767423 TGCTTATATACTCTTTGCATGCTTGA 59.233 34.615 20.33 12.69 0.00 3.02
438 440 6.927416 ACTCTTTGCATGCTTGATTGAATTA 58.073 32.000 20.33 0.00 0.00 1.40
462 464 4.213270 TGTTAAGATTGCTTGACTTGTCCG 59.787 41.667 0.00 0.00 40.27 4.79
468 471 3.462483 TGCTTGACTTGTCCGAAGTTA 57.538 42.857 0.00 0.00 0.00 2.24
483 486 6.093633 GTCCGAAGTTACTAAAATCTGCCAAT 59.906 38.462 0.00 0.00 0.00 3.16
538 543 4.684724 TGTCAAGTAGTCTAATCACCCCT 58.315 43.478 0.00 0.00 0.00 4.79
539 544 5.091552 TGTCAAGTAGTCTAATCACCCCTT 58.908 41.667 0.00 0.00 0.00 3.95
562 567 2.040779 CCCCCTCCCCCTCTACAC 60.041 72.222 0.00 0.00 0.00 2.90
563 568 2.784984 CCCCTCCCCCTCTACACA 59.215 66.667 0.00 0.00 0.00 3.72
564 569 1.318380 CCCCTCCCCCTCTACACAT 59.682 63.158 0.00 0.00 0.00 3.21
565 570 0.566176 CCCCTCCCCCTCTACACATA 59.434 60.000 0.00 0.00 0.00 2.29
566 571 1.718280 CCCTCCCCCTCTACACATAC 58.282 60.000 0.00 0.00 0.00 2.39
567 572 1.220750 CCCTCCCCCTCTACACATACT 59.779 57.143 0.00 0.00 0.00 2.12
568 573 2.360423 CCCTCCCCCTCTACACATACTT 60.360 54.545 0.00 0.00 0.00 2.24
569 574 3.385115 CCTCCCCCTCTACACATACTTT 58.615 50.000 0.00 0.00 0.00 2.66
570 575 3.388350 CCTCCCCCTCTACACATACTTTC 59.612 52.174 0.00 0.00 0.00 2.62
571 576 3.028850 TCCCCCTCTACACATACTTTCG 58.971 50.000 0.00 0.00 0.00 3.46
572 577 3.028850 CCCCCTCTACACATACTTTCGA 58.971 50.000 0.00 0.00 0.00 3.71
573 578 3.641906 CCCCCTCTACACATACTTTCGAT 59.358 47.826 0.00 0.00 0.00 3.59
574 579 4.262079 CCCCCTCTACACATACTTTCGATC 60.262 50.000 0.00 0.00 0.00 3.69
575 580 4.262079 CCCCTCTACACATACTTTCGATCC 60.262 50.000 0.00 0.00 0.00 3.36
576 581 4.585162 CCCTCTACACATACTTTCGATCCT 59.415 45.833 0.00 0.00 0.00 3.24
577 582 5.768662 CCCTCTACACATACTTTCGATCCTA 59.231 44.000 0.00 0.00 0.00 2.94
578 583 6.294065 CCCTCTACACATACTTTCGATCCTAC 60.294 46.154 0.00 0.00 0.00 3.18
579 584 6.262496 CCTCTACACATACTTTCGATCCTACA 59.738 42.308 0.00 0.00 0.00 2.74
580 585 7.260558 TCTACACATACTTTCGATCCTACAG 57.739 40.000 0.00 0.00 0.00 2.74
581 586 5.916661 ACACATACTTTCGATCCTACAGT 57.083 39.130 0.00 0.00 0.00 3.55
582 587 5.651530 ACACATACTTTCGATCCTACAGTG 58.348 41.667 0.00 0.00 0.00 3.66
583 588 4.504461 CACATACTTTCGATCCTACAGTGC 59.496 45.833 0.00 0.00 0.00 4.40
584 589 4.402793 ACATACTTTCGATCCTACAGTGCT 59.597 41.667 0.00 0.00 0.00 4.40
585 590 3.512033 ACTTTCGATCCTACAGTGCTC 57.488 47.619 0.00 0.00 0.00 4.26
586 591 3.093057 ACTTTCGATCCTACAGTGCTCT 58.907 45.455 0.00 0.00 0.00 4.09
587 592 3.511934 ACTTTCGATCCTACAGTGCTCTT 59.488 43.478 0.00 0.00 0.00 2.85
588 593 4.021016 ACTTTCGATCCTACAGTGCTCTTT 60.021 41.667 0.00 0.00 0.00 2.52
589 594 4.537135 TTCGATCCTACAGTGCTCTTTT 57.463 40.909 0.00 0.00 0.00 2.27
590 595 4.111375 TCGATCCTACAGTGCTCTTTTC 57.889 45.455 0.00 0.00 0.00 2.29
591 596 3.509967 TCGATCCTACAGTGCTCTTTTCA 59.490 43.478 0.00 0.00 0.00 2.69
592 597 4.021456 TCGATCCTACAGTGCTCTTTTCAA 60.021 41.667 0.00 0.00 0.00 2.69
593 598 4.872691 CGATCCTACAGTGCTCTTTTCAAT 59.127 41.667 0.00 0.00 0.00 2.57
594 599 5.220548 CGATCCTACAGTGCTCTTTTCAATG 60.221 44.000 0.00 0.00 35.84 2.82
595 600 4.326826 TCCTACAGTGCTCTTTTCAATGG 58.673 43.478 0.00 0.00 34.25 3.16
596 601 4.074970 CCTACAGTGCTCTTTTCAATGGT 58.925 43.478 0.00 0.00 34.25 3.55
597 602 4.520492 CCTACAGTGCTCTTTTCAATGGTT 59.480 41.667 0.00 0.00 34.25 3.67
598 603 5.705441 CCTACAGTGCTCTTTTCAATGGTTA 59.295 40.000 0.00 0.00 34.25 2.85
599 604 6.206634 CCTACAGTGCTCTTTTCAATGGTTAA 59.793 38.462 0.00 0.00 34.25 2.01
600 605 6.463995 ACAGTGCTCTTTTCAATGGTTAAA 57.536 33.333 0.00 0.00 34.25 1.52
601 606 6.507023 ACAGTGCTCTTTTCAATGGTTAAAG 58.493 36.000 0.00 0.00 34.25 1.85
602 607 5.922544 CAGTGCTCTTTTCAATGGTTAAAGG 59.077 40.000 0.00 0.00 31.45 3.11
603 608 5.011023 AGTGCTCTTTTCAATGGTTAAAGGG 59.989 40.000 0.00 0.00 33.50 3.95
604 609 4.898861 TGCTCTTTTCAATGGTTAAAGGGT 59.101 37.500 0.00 0.00 33.04 4.34
605 610 5.221422 TGCTCTTTTCAATGGTTAAAGGGTG 60.221 40.000 0.00 0.00 33.04 4.61
606 611 5.010617 GCTCTTTTCAATGGTTAAAGGGTGA 59.989 40.000 0.00 0.00 33.04 4.02
607 612 6.648879 TCTTTTCAATGGTTAAAGGGTGAG 57.351 37.500 0.00 0.00 31.45 3.51
608 613 6.133356 TCTTTTCAATGGTTAAAGGGTGAGT 58.867 36.000 0.00 0.00 31.45 3.41
609 614 5.782893 TTTCAATGGTTAAAGGGTGAGTG 57.217 39.130 0.00 0.00 0.00 3.51
610 615 4.715534 TCAATGGTTAAAGGGTGAGTGA 57.284 40.909 0.00 0.00 0.00 3.41
611 616 4.651778 TCAATGGTTAAAGGGTGAGTGAG 58.348 43.478 0.00 0.00 0.00 3.51
612 617 4.349636 TCAATGGTTAAAGGGTGAGTGAGA 59.650 41.667 0.00 0.00 0.00 3.27
613 618 4.993705 ATGGTTAAAGGGTGAGTGAGAA 57.006 40.909 0.00 0.00 0.00 2.87
614 619 4.781775 TGGTTAAAGGGTGAGTGAGAAA 57.218 40.909 0.00 0.00 0.00 2.52
615 620 5.319043 TGGTTAAAGGGTGAGTGAGAAAT 57.681 39.130 0.00 0.00 0.00 2.17
616 621 6.442541 TGGTTAAAGGGTGAGTGAGAAATA 57.557 37.500 0.00 0.00 0.00 1.40
617 622 6.843752 TGGTTAAAGGGTGAGTGAGAAATAA 58.156 36.000 0.00 0.00 0.00 1.40
618 623 6.713450 TGGTTAAAGGGTGAGTGAGAAATAAC 59.287 38.462 0.00 0.00 0.00 1.89
619 624 6.940867 GGTTAAAGGGTGAGTGAGAAATAACT 59.059 38.462 0.00 0.00 0.00 2.24
620 625 8.098912 GGTTAAAGGGTGAGTGAGAAATAACTA 58.901 37.037 0.00 0.00 0.00 2.24
621 626 9.668497 GTTAAAGGGTGAGTGAGAAATAACTAT 57.332 33.333 0.00 0.00 0.00 2.12
733 738 7.844009 TCGAGGACCTTACAAAGTATTACAAT 58.156 34.615 0.00 0.00 0.00 2.71
784 789 4.528596 ACATATGCCACTACTCCTATCCAC 59.471 45.833 1.58 0.00 0.00 4.02
787 792 4.193240 TGCCACTACTCCTATCCACATA 57.807 45.455 0.00 0.00 0.00 2.29
798 803 7.256399 ACTCCTATCCACATAATGAAGGGATA 58.744 38.462 0.00 0.00 39.08 2.59
805 810 7.246027 TCCACATAATGAAGGGATACTAGCTA 58.754 38.462 0.00 0.00 0.00 3.32
827 832 2.012051 GCCAAATACCCAGACCACTCG 61.012 57.143 0.00 0.00 0.00 4.18
881 886 1.105167 CGAGCCACATACCGGGTCTA 61.105 60.000 6.32 0.00 46.65 2.59
1068 1073 4.194720 GCGCCGAGTCTCCGATGT 62.195 66.667 0.00 0.00 0.00 3.06
1088 1093 4.498520 CACGCCGCCGAGATCTGT 62.499 66.667 0.00 0.00 38.29 3.41
1089 1094 3.760035 ACGCCGCCGAGATCTGTT 61.760 61.111 0.00 0.00 38.29 3.16
1095 1100 1.673033 CCGCCGAGATCTGTTGTCTTT 60.673 52.381 0.00 0.00 0.00 2.52
1187 1192 2.042831 GCTCTGGGAAAGCACGCAT 61.043 57.895 0.00 0.00 39.61 4.73
1255 1262 2.202797 CCATCGTCTGGTCCTGCG 60.203 66.667 6.34 6.34 40.49 5.18
1276 1283 1.000396 GCAGGTCCTGGGCTTTCAT 60.000 57.895 20.72 0.00 31.21 2.57
1396 1403 4.569214 AGCAACCCTACCTCTGCT 57.431 55.556 0.00 0.00 40.27 4.24
1397 1404 0.615850 GAGCAACCCTACCTCTGCTT 59.384 55.000 0.00 0.00 44.93 3.91
1398 1405 1.003696 GAGCAACCCTACCTCTGCTTT 59.996 52.381 0.00 0.00 44.93 3.51
1399 1406 1.003696 AGCAACCCTACCTCTGCTTTC 59.996 52.381 0.00 0.00 42.37 2.62
1400 1407 1.726853 CAACCCTACCTCTGCTTTCG 58.273 55.000 0.00 0.00 0.00 3.46
1401 1408 0.036294 AACCCTACCTCTGCTTTCGC 60.036 55.000 0.00 0.00 0.00 4.70
1402 1409 1.153349 CCCTACCTCTGCTTTCGCC 60.153 63.158 0.00 0.00 34.43 5.54
1403 1410 1.153349 CCTACCTCTGCTTTCGCCC 60.153 63.158 0.00 0.00 34.43 6.13
1404 1411 1.519455 CTACCTCTGCTTTCGCCCG 60.519 63.158 0.00 0.00 34.43 6.13
1405 1412 2.907897 CTACCTCTGCTTTCGCCCGG 62.908 65.000 0.00 0.00 34.43 5.73
1406 1413 4.082523 CCTCTGCTTTCGCCCGGA 62.083 66.667 0.73 0.00 34.43 5.14
1407 1414 2.510238 CTCTGCTTTCGCCCGGAG 60.510 66.667 0.73 0.00 34.43 4.63
1408 1415 4.760047 TCTGCTTTCGCCCGGAGC 62.760 66.667 0.73 3.51 36.95 4.70
1410 1417 4.634703 TGCTTTCGCCCGGAGCAA 62.635 61.111 12.03 4.49 42.89 3.91
1411 1418 4.103103 GCTTTCGCCCGGAGCAAC 62.103 66.667 0.73 0.00 44.04 4.17
1412 1419 3.431725 CTTTCGCCCGGAGCAACC 61.432 66.667 0.73 0.00 44.04 3.77
1416 1423 4.832608 CGCCCGGAGCAACCCTAC 62.833 72.222 0.73 0.00 44.04 3.18
1417 1424 4.484872 GCCCGGAGCAACCCTACC 62.485 72.222 0.73 0.00 42.97 3.18
1418 1425 2.687566 CCCGGAGCAACCCTACCT 60.688 66.667 0.73 0.00 34.64 3.08
1419 1426 2.732619 CCCGGAGCAACCCTACCTC 61.733 68.421 0.73 0.00 34.64 3.85
1420 1427 1.686110 CCGGAGCAACCCTACCTCT 60.686 63.158 0.00 0.00 34.64 3.69
1421 1428 0.396695 CCGGAGCAACCCTACCTCTA 60.397 60.000 0.00 0.00 34.64 2.43
1422 1429 0.745468 CGGAGCAACCCTACCTCTAC 59.255 60.000 0.00 0.00 34.64 2.59
1423 1430 1.861982 GGAGCAACCCTACCTCTACA 58.138 55.000 0.00 0.00 0.00 2.74
1424 1431 1.481363 GGAGCAACCCTACCTCTACAC 59.519 57.143 0.00 0.00 0.00 2.90
1425 1432 1.481363 GAGCAACCCTACCTCTACACC 59.519 57.143 0.00 0.00 0.00 4.16
1426 1433 0.540454 GCAACCCTACCTCTACACCC 59.460 60.000 0.00 0.00 0.00 4.61
1427 1434 1.900337 GCAACCCTACCTCTACACCCT 60.900 57.143 0.00 0.00 0.00 4.34
1428 1435 2.108970 CAACCCTACCTCTACACCCTC 58.891 57.143 0.00 0.00 0.00 4.30
1429 1436 1.390287 ACCCTACCTCTACACCCTCA 58.610 55.000 0.00 0.00 0.00 3.86
1430 1437 1.006878 ACCCTACCTCTACACCCTCAC 59.993 57.143 0.00 0.00 0.00 3.51
1431 1438 1.288335 CCCTACCTCTACACCCTCACT 59.712 57.143 0.00 0.00 0.00 3.41
1432 1439 2.379972 CCTACCTCTACACCCTCACTG 58.620 57.143 0.00 0.00 0.00 3.66
1433 1440 2.025226 CCTACCTCTACACCCTCACTGA 60.025 54.545 0.00 0.00 0.00 3.41
1434 1441 2.696526 ACCTCTACACCCTCACTGAA 57.303 50.000 0.00 0.00 0.00 3.02
1435 1442 3.191888 ACCTCTACACCCTCACTGAAT 57.808 47.619 0.00 0.00 0.00 2.57
1436 1443 3.100671 ACCTCTACACCCTCACTGAATC 58.899 50.000 0.00 0.00 0.00 2.52
1437 1444 3.099905 CCTCTACACCCTCACTGAATCA 58.900 50.000 0.00 0.00 0.00 2.57
1438 1445 3.131933 CCTCTACACCCTCACTGAATCAG 59.868 52.174 8.98 8.98 37.52 2.90
1439 1446 2.497675 TCTACACCCTCACTGAATCAGC 59.502 50.000 10.62 0.00 34.37 4.26
1440 1447 1.356124 ACACCCTCACTGAATCAGCT 58.644 50.000 10.62 0.00 34.37 4.24
1441 1448 1.002888 ACACCCTCACTGAATCAGCTG 59.997 52.381 10.62 7.63 34.37 4.24
1442 1449 0.617413 ACCCTCACTGAATCAGCTGG 59.383 55.000 15.13 9.63 34.37 4.85
1443 1450 0.747283 CCCTCACTGAATCAGCTGGC 60.747 60.000 15.13 4.52 34.37 4.85
1444 1451 0.035725 CCTCACTGAATCAGCTGGCA 60.036 55.000 15.13 9.13 34.37 4.92
1445 1452 1.408405 CCTCACTGAATCAGCTGGCAT 60.408 52.381 15.13 0.00 34.37 4.40
1446 1453 2.366533 CTCACTGAATCAGCTGGCATT 58.633 47.619 15.13 7.15 34.37 3.56
1447 1454 3.538591 CTCACTGAATCAGCTGGCATTA 58.461 45.455 15.13 0.00 34.37 1.90
1448 1455 3.273434 TCACTGAATCAGCTGGCATTAC 58.727 45.455 15.13 2.88 34.37 1.89
1449 1456 3.054875 TCACTGAATCAGCTGGCATTACT 60.055 43.478 15.13 0.00 34.37 2.24
1450 1457 3.693085 CACTGAATCAGCTGGCATTACTT 59.307 43.478 15.13 0.00 34.37 2.24
1451 1458 3.944015 ACTGAATCAGCTGGCATTACTTC 59.056 43.478 15.13 6.59 34.37 3.01
1452 1459 3.943381 CTGAATCAGCTGGCATTACTTCA 59.057 43.478 15.13 10.34 0.00 3.02
1453 1460 4.334552 TGAATCAGCTGGCATTACTTCAA 58.665 39.130 15.13 0.00 0.00 2.69
1454 1461 4.951715 TGAATCAGCTGGCATTACTTCAAT 59.048 37.500 15.13 0.00 0.00 2.57
1455 1462 4.913335 ATCAGCTGGCATTACTTCAATG 57.087 40.909 15.13 0.00 45.87 2.82
1456 1463 3.018856 TCAGCTGGCATTACTTCAATGG 58.981 45.455 15.13 0.00 43.70 3.16
1457 1464 2.756760 CAGCTGGCATTACTTCAATGGT 59.243 45.455 5.57 0.00 43.70 3.55
1458 1465 3.194116 CAGCTGGCATTACTTCAATGGTT 59.806 43.478 5.57 0.00 43.70 3.67
1459 1466 4.398988 CAGCTGGCATTACTTCAATGGTTA 59.601 41.667 5.57 0.00 43.70 2.85
1460 1467 5.016173 AGCTGGCATTACTTCAATGGTTAA 58.984 37.500 0.00 0.00 43.70 2.01
1461 1468 5.102313 GCTGGCATTACTTCAATGGTTAAC 58.898 41.667 0.00 0.00 43.70 2.01
1462 1469 5.105756 GCTGGCATTACTTCAATGGTTAACT 60.106 40.000 5.42 0.00 43.70 2.24
1463 1470 6.266168 TGGCATTACTTCAATGGTTAACTG 57.734 37.500 5.42 0.00 43.70 3.16
1464 1471 5.772672 TGGCATTACTTCAATGGTTAACTGT 59.227 36.000 5.42 0.00 43.70 3.55
1465 1472 6.943146 TGGCATTACTTCAATGGTTAACTGTA 59.057 34.615 5.42 0.00 43.70 2.74
1466 1473 7.448777 TGGCATTACTTCAATGGTTAACTGTAA 59.551 33.333 5.42 5.02 43.70 2.41
1467 1474 7.968405 GGCATTACTTCAATGGTTAACTGTAAG 59.032 37.037 5.42 5.59 43.70 2.34
1468 1475 8.726988 GCATTACTTCAATGGTTAACTGTAAGA 58.273 33.333 5.42 0.00 43.70 2.10
1472 1479 8.974060 ACTTCAATGGTTAACTGTAAGAAGAA 57.026 30.769 22.53 10.76 37.43 2.52
1473 1480 9.403583 ACTTCAATGGTTAACTGTAAGAAGAAA 57.596 29.630 22.53 0.53 37.43 2.52
1476 1483 9.403583 TCAATGGTTAACTGTAAGAAGAAAACT 57.596 29.630 5.42 0.00 37.43 2.66
1477 1484 9.450807 CAATGGTTAACTGTAAGAAGAAAACTG 57.549 33.333 5.42 0.00 37.43 3.16
1478 1485 8.974060 ATGGTTAACTGTAAGAAGAAAACTGA 57.026 30.769 5.42 0.00 37.43 3.41
1479 1486 8.795842 TGGTTAACTGTAAGAAGAAAACTGAA 57.204 30.769 5.42 0.00 37.43 3.02
1480 1487 8.889717 TGGTTAACTGTAAGAAGAAAACTGAAG 58.110 33.333 5.42 0.00 37.43 3.02
1481 1488 9.106070 GGTTAACTGTAAGAAGAAAACTGAAGA 57.894 33.333 5.42 0.00 37.43 2.87
1486 1493 9.396022 ACTGTAAGAAGAAAACTGAAGAAATGA 57.604 29.630 0.00 0.00 37.43 2.57
1487 1494 9.875675 CTGTAAGAAGAAAACTGAAGAAATGAG 57.124 33.333 0.00 0.00 34.07 2.90
1488 1495 9.613428 TGTAAGAAGAAAACTGAAGAAATGAGA 57.387 29.630 0.00 0.00 0.00 3.27
1492 1499 8.945057 AGAAGAAAACTGAAGAAATGAGATAGC 58.055 33.333 0.00 0.00 0.00 2.97
1493 1500 8.627208 AAGAAAACTGAAGAAATGAGATAGCA 57.373 30.769 0.00 0.00 0.00 3.49
1494 1501 8.038492 AGAAAACTGAAGAAATGAGATAGCAC 57.962 34.615 0.00 0.00 0.00 4.40
1495 1502 7.663081 AGAAAACTGAAGAAATGAGATAGCACA 59.337 33.333 0.00 0.00 0.00 4.57
1496 1503 7.750229 AAACTGAAGAAATGAGATAGCACAA 57.250 32.000 0.00 0.00 0.00 3.33
1497 1504 7.750229 AACTGAAGAAATGAGATAGCACAAA 57.250 32.000 0.00 0.00 0.00 2.83
1498 1505 7.750229 ACTGAAGAAATGAGATAGCACAAAA 57.250 32.000 0.00 0.00 0.00 2.44
1499 1506 7.588512 ACTGAAGAAATGAGATAGCACAAAAC 58.411 34.615 0.00 0.00 0.00 2.43
1500 1507 7.229306 ACTGAAGAAATGAGATAGCACAAAACA 59.771 33.333 0.00 0.00 0.00 2.83
1501 1508 7.939782 TGAAGAAATGAGATAGCACAAAACAA 58.060 30.769 0.00 0.00 0.00 2.83
1502 1509 7.862372 TGAAGAAATGAGATAGCACAAAACAAC 59.138 33.333 0.00 0.00 0.00 3.32
1503 1510 7.275888 AGAAATGAGATAGCACAAAACAACA 57.724 32.000 0.00 0.00 0.00 3.33
1504 1511 7.889469 AGAAATGAGATAGCACAAAACAACAT 58.111 30.769 0.00 0.00 0.00 2.71
1505 1512 8.025445 AGAAATGAGATAGCACAAAACAACATC 58.975 33.333 0.00 0.00 0.00 3.06
1506 1513 7.458409 AATGAGATAGCACAAAACAACATCT 57.542 32.000 0.00 0.00 0.00 2.90
1507 1514 8.565896 AATGAGATAGCACAAAACAACATCTA 57.434 30.769 0.00 0.00 0.00 1.98
1508 1515 8.743085 ATGAGATAGCACAAAACAACATCTAT 57.257 30.769 0.00 0.00 0.00 1.98
1509 1516 9.836864 ATGAGATAGCACAAAACAACATCTATA 57.163 29.630 0.00 0.00 0.00 1.31
1510 1517 9.098355 TGAGATAGCACAAAACAACATCTATAC 57.902 33.333 0.00 0.00 0.00 1.47
1511 1518 9.098355 GAGATAGCACAAAACAACATCTATACA 57.902 33.333 0.00 0.00 0.00 2.29
1512 1519 9.448438 AGATAGCACAAAACAACATCTATACAA 57.552 29.630 0.00 0.00 0.00 2.41
1515 1522 8.746922 AGCACAAAACAACATCTATACAAATG 57.253 30.769 0.00 0.00 0.00 2.32
1516 1523 8.575589 AGCACAAAACAACATCTATACAAATGA 58.424 29.630 0.00 0.00 0.00 2.57
1517 1524 9.357652 GCACAAAACAACATCTATACAAATGAT 57.642 29.630 0.00 0.00 0.00 2.45
1521 1528 9.874205 AAAACAACATCTATACAAATGATTGGG 57.126 29.630 0.00 0.00 41.01 4.12
1522 1529 8.821686 AACAACATCTATACAAATGATTGGGA 57.178 30.769 0.00 0.00 41.01 4.37
1523 1530 8.455903 ACAACATCTATACAAATGATTGGGAG 57.544 34.615 0.00 0.00 41.01 4.30
1524 1531 8.274322 ACAACATCTATACAAATGATTGGGAGA 58.726 33.333 0.00 0.00 41.01 3.71
1525 1532 8.562892 CAACATCTATACAAATGATTGGGAGAC 58.437 37.037 0.00 0.00 41.01 3.36
1526 1533 6.931281 ACATCTATACAAATGATTGGGAGACG 59.069 38.462 0.00 0.00 41.01 4.18
1527 1534 5.853936 TCTATACAAATGATTGGGAGACGG 58.146 41.667 0.00 0.00 41.01 4.79
1528 1535 2.879103 ACAAATGATTGGGAGACGGT 57.121 45.000 0.00 0.00 41.01 4.83
1529 1536 2.436417 ACAAATGATTGGGAGACGGTG 58.564 47.619 0.00 0.00 41.01 4.94
1530 1537 2.039746 ACAAATGATTGGGAGACGGTGA 59.960 45.455 0.00 0.00 41.01 4.02
1531 1538 3.081061 CAAATGATTGGGAGACGGTGAA 58.919 45.455 0.00 0.00 32.69 3.18
1532 1539 2.698855 ATGATTGGGAGACGGTGAAG 57.301 50.000 0.00 0.00 0.00 3.02
1533 1540 0.036388 TGATTGGGAGACGGTGAAGC 60.036 55.000 0.00 0.00 0.00 3.86
1534 1541 0.250513 GATTGGGAGACGGTGAAGCT 59.749 55.000 0.00 0.00 0.00 3.74
1535 1542 0.693049 ATTGGGAGACGGTGAAGCTT 59.307 50.000 0.00 0.00 0.00 3.74
1536 1543 0.472471 TTGGGAGACGGTGAAGCTTT 59.528 50.000 0.00 0.00 0.00 3.51
1537 1544 1.344065 TGGGAGACGGTGAAGCTTTA 58.656 50.000 0.00 0.00 0.00 1.85
1538 1545 1.001633 TGGGAGACGGTGAAGCTTTAC 59.998 52.381 12.74 12.74 0.00 2.01
1539 1546 1.001633 GGGAGACGGTGAAGCTTTACA 59.998 52.381 21.43 3.70 0.00 2.41
1540 1547 2.549349 GGGAGACGGTGAAGCTTTACAA 60.549 50.000 21.43 0.00 0.00 2.41
1541 1548 2.737252 GGAGACGGTGAAGCTTTACAAG 59.263 50.000 21.43 16.49 0.00 3.16
1542 1549 3.391049 GAGACGGTGAAGCTTTACAAGT 58.609 45.455 21.43 19.18 0.00 3.16
1543 1550 3.805207 AGACGGTGAAGCTTTACAAGTT 58.195 40.909 21.43 9.64 0.00 2.66
1544 1551 4.196971 AGACGGTGAAGCTTTACAAGTTT 58.803 39.130 21.43 13.20 34.45 2.66
1545 1552 4.035208 AGACGGTGAAGCTTTACAAGTTTG 59.965 41.667 21.43 7.36 31.74 2.93
1546 1553 3.066203 ACGGTGAAGCTTTACAAGTTTGG 59.934 43.478 21.43 5.40 31.74 3.28
1547 1554 3.381045 GGTGAAGCTTTACAAGTTTGGC 58.619 45.455 21.43 0.00 31.74 4.52
1548 1555 3.181480 GGTGAAGCTTTACAAGTTTGGCA 60.181 43.478 21.43 0.00 31.74 4.92
1549 1556 3.796717 GTGAAGCTTTACAAGTTTGGCAC 59.203 43.478 15.93 3.87 31.74 5.01
1550 1557 3.181480 TGAAGCTTTACAAGTTTGGCACC 60.181 43.478 0.00 0.00 31.74 5.01
1551 1558 1.336755 AGCTTTACAAGTTTGGCACCG 59.663 47.619 0.00 0.00 0.00 4.94
1552 1559 1.066454 GCTTTACAAGTTTGGCACCGT 59.934 47.619 0.00 0.00 0.00 4.83
1553 1560 2.857104 GCTTTACAAGTTTGGCACCGTC 60.857 50.000 0.00 0.00 0.00 4.79
1554 1561 0.938713 TTACAAGTTTGGCACCGTCG 59.061 50.000 0.00 0.00 0.00 5.12
1555 1562 0.104487 TACAAGTTTGGCACCGTCGA 59.896 50.000 0.00 0.00 0.00 4.20
1556 1563 1.278637 CAAGTTTGGCACCGTCGAC 59.721 57.895 5.18 5.18 0.00 4.20
1557 1564 2.241880 AAGTTTGGCACCGTCGACG 61.242 57.895 30.33 30.33 39.44 5.12
1596 1603 9.967451 TCATAAAATAGTGAATGTTTAGGTCCA 57.033 29.630 0.00 0.00 0.00 4.02
1600 1607 8.650143 AAATAGTGAATGTTTAGGTCCATTGT 57.350 30.769 0.00 0.00 31.67 2.71
1601 1608 9.747898 AAATAGTGAATGTTTAGGTCCATTGTA 57.252 29.630 0.00 0.00 31.67 2.41
1602 1609 9.747898 AATAGTGAATGTTTAGGTCCATTGTAA 57.252 29.630 0.00 0.00 31.67 2.41
1603 1610 9.747898 ATAGTGAATGTTTAGGTCCATTGTAAA 57.252 29.630 0.00 0.00 31.67 2.01
1604 1611 8.650143 AGTGAATGTTTAGGTCCATTGTAAAT 57.350 30.769 0.00 0.00 31.67 1.40
1605 1612 8.739972 AGTGAATGTTTAGGTCCATTGTAAATC 58.260 33.333 0.00 0.00 31.67 2.17
1606 1613 7.696453 GTGAATGTTTAGGTCCATTGTAAATCG 59.304 37.037 0.00 0.00 31.67 3.34
1607 1614 5.554822 TGTTTAGGTCCATTGTAAATCGC 57.445 39.130 0.00 0.00 0.00 4.58
1608 1615 5.004448 TGTTTAGGTCCATTGTAAATCGCA 58.996 37.500 0.00 0.00 0.00 5.10
1609 1616 5.106475 TGTTTAGGTCCATTGTAAATCGCAC 60.106 40.000 0.00 0.00 0.00 5.34
1610 1617 3.066291 AGGTCCATTGTAAATCGCACA 57.934 42.857 0.00 0.00 0.00 4.57
1611 1618 2.747446 AGGTCCATTGTAAATCGCACAC 59.253 45.455 0.00 0.00 0.00 3.82
1612 1619 2.486203 GGTCCATTGTAAATCGCACACA 59.514 45.455 0.00 0.00 0.00 3.72
1613 1620 3.426159 GGTCCATTGTAAATCGCACACAG 60.426 47.826 0.00 0.00 0.00 3.66
1614 1621 2.161410 TCCATTGTAAATCGCACACAGC 59.839 45.455 0.00 0.00 40.87 4.40
1615 1622 2.162208 CCATTGTAAATCGCACACAGCT 59.838 45.455 0.00 0.00 42.61 4.24
1616 1623 3.366273 CCATTGTAAATCGCACACAGCTT 60.366 43.478 0.00 0.00 42.61 3.74
1617 1624 3.536158 TTGTAAATCGCACACAGCTTC 57.464 42.857 0.00 0.00 42.61 3.86
1618 1625 1.459209 TGTAAATCGCACACAGCTTCG 59.541 47.619 0.00 0.00 42.61 3.79
1619 1626 1.075542 TAAATCGCACACAGCTTCGG 58.924 50.000 0.00 0.00 42.61 4.30
1620 1627 0.602638 AAATCGCACACAGCTTCGGA 60.603 50.000 0.00 0.00 42.61 4.55
1621 1628 1.291877 AATCGCACACAGCTTCGGAC 61.292 55.000 0.00 0.00 42.61 4.79
1622 1629 3.767230 CGCACACAGCTTCGGACG 61.767 66.667 0.00 0.00 42.61 4.79
1623 1630 3.414700 GCACACAGCTTCGGACGG 61.415 66.667 0.00 0.00 41.15 4.79
1624 1631 2.338620 CACACAGCTTCGGACGGA 59.661 61.111 0.00 0.00 0.00 4.69
1625 1632 1.079819 CACACAGCTTCGGACGGAT 60.080 57.895 0.00 0.00 0.00 4.18
1626 1633 0.670546 CACACAGCTTCGGACGGATT 60.671 55.000 0.00 0.00 0.00 3.01
1627 1634 0.034896 ACACAGCTTCGGACGGATTT 59.965 50.000 0.00 0.00 0.00 2.17
1628 1635 0.443869 CACAGCTTCGGACGGATTTG 59.556 55.000 0.00 0.00 0.00 2.32
1629 1636 0.034896 ACAGCTTCGGACGGATTTGT 59.965 50.000 0.00 0.00 0.00 2.83
1630 1637 1.156736 CAGCTTCGGACGGATTTGTT 58.843 50.000 0.00 0.00 0.00 2.83
1631 1638 1.535462 CAGCTTCGGACGGATTTGTTT 59.465 47.619 0.00 0.00 0.00 2.83
1632 1639 2.739913 CAGCTTCGGACGGATTTGTTTA 59.260 45.455 0.00 0.00 0.00 2.01
1633 1640 3.000727 AGCTTCGGACGGATTTGTTTAG 58.999 45.455 0.00 0.00 0.00 1.85
1634 1641 2.997986 GCTTCGGACGGATTTGTTTAGA 59.002 45.455 0.00 0.00 0.00 2.10
1635 1642 3.062234 GCTTCGGACGGATTTGTTTAGAG 59.938 47.826 0.00 0.00 0.00 2.43
1636 1643 3.241067 TCGGACGGATTTGTTTAGAGG 57.759 47.619 0.00 0.00 0.00 3.69
1637 1644 1.664151 CGGACGGATTTGTTTAGAGGC 59.336 52.381 0.00 0.00 0.00 4.70
1638 1645 1.664151 GGACGGATTTGTTTAGAGGCG 59.336 52.381 0.00 0.00 0.00 5.52
1639 1646 1.664151 GACGGATTTGTTTAGAGGCGG 59.336 52.381 0.00 0.00 0.00 6.13
1640 1647 1.014352 CGGATTTGTTTAGAGGCGGG 58.986 55.000 0.00 0.00 0.00 6.13
1641 1648 1.677820 CGGATTTGTTTAGAGGCGGGT 60.678 52.381 0.00 0.00 0.00 5.28
1642 1649 2.419021 CGGATTTGTTTAGAGGCGGGTA 60.419 50.000 0.00 0.00 0.00 3.69
1643 1650 3.613030 GGATTTGTTTAGAGGCGGGTAA 58.387 45.455 0.00 0.00 0.00 2.85
1644 1651 4.204799 GGATTTGTTTAGAGGCGGGTAAT 58.795 43.478 0.00 0.00 0.00 1.89
1645 1652 4.643334 GGATTTGTTTAGAGGCGGGTAATT 59.357 41.667 0.00 0.00 0.00 1.40
1646 1653 5.449999 GGATTTGTTTAGAGGCGGGTAATTG 60.450 44.000 0.00 0.00 0.00 2.32
1647 1654 2.361789 TGTTTAGAGGCGGGTAATTGC 58.638 47.619 0.00 0.00 0.00 3.56
1648 1655 2.290387 TGTTTAGAGGCGGGTAATTGCA 60.290 45.455 0.00 0.00 0.00 4.08
1649 1656 2.325583 TTAGAGGCGGGTAATTGCAG 57.674 50.000 0.00 0.00 0.00 4.41
1650 1657 0.179056 TAGAGGCGGGTAATTGCAGC 60.179 55.000 5.01 5.01 0.00 5.25
1651 1658 1.452108 GAGGCGGGTAATTGCAGCT 60.452 57.895 11.56 0.00 0.00 4.24
1652 1659 1.440145 GAGGCGGGTAATTGCAGCTC 61.440 60.000 11.56 5.55 0.00 4.09
1653 1660 1.748879 GGCGGGTAATTGCAGCTCA 60.749 57.895 11.56 0.00 0.00 4.26
1654 1661 1.312371 GGCGGGTAATTGCAGCTCAA 61.312 55.000 11.56 1.85 39.32 3.02
1655 1662 0.740737 GCGGGTAATTGCAGCTCAAT 59.259 50.000 5.80 5.80 46.82 2.57
1678 1685 1.999051 CGAAGCACGGACATGTAGC 59.001 57.895 0.00 0.76 38.46 3.58
1679 1686 0.735978 CGAAGCACGGACATGTAGCA 60.736 55.000 0.00 0.00 38.46 3.49
1680 1687 1.002366 GAAGCACGGACATGTAGCAG 58.998 55.000 0.00 0.00 0.00 4.24
1681 1688 0.608130 AAGCACGGACATGTAGCAGA 59.392 50.000 0.00 0.00 0.00 4.26
1682 1689 0.826715 AGCACGGACATGTAGCAGAT 59.173 50.000 0.00 0.00 0.00 2.90
1683 1690 1.208052 AGCACGGACATGTAGCAGATT 59.792 47.619 0.00 0.00 0.00 2.40
1684 1691 2.430694 AGCACGGACATGTAGCAGATTA 59.569 45.455 0.00 0.00 0.00 1.75
1685 1692 3.070159 AGCACGGACATGTAGCAGATTAT 59.930 43.478 0.00 0.00 0.00 1.28
1686 1693 3.185188 GCACGGACATGTAGCAGATTATG 59.815 47.826 0.00 0.00 0.00 1.90
1687 1694 3.742882 CACGGACATGTAGCAGATTATGG 59.257 47.826 0.00 0.00 0.00 2.74
1688 1695 2.738846 CGGACATGTAGCAGATTATGGC 59.261 50.000 0.00 0.00 0.00 4.40
1689 1696 3.743521 GGACATGTAGCAGATTATGGCA 58.256 45.455 0.00 0.00 30.09 4.92
1690 1697 4.330250 GGACATGTAGCAGATTATGGCAT 58.670 43.478 4.88 4.88 30.09 4.40
1691 1698 4.394300 GGACATGTAGCAGATTATGGCATC 59.606 45.833 1.65 0.00 30.09 3.91
1692 1699 4.976864 ACATGTAGCAGATTATGGCATCA 58.023 39.130 1.65 0.00 0.00 3.07
1693 1700 5.379187 ACATGTAGCAGATTATGGCATCAA 58.621 37.500 1.65 0.00 0.00 2.57
1694 1701 5.472478 ACATGTAGCAGATTATGGCATCAAG 59.528 40.000 1.65 0.00 0.00 3.02
1695 1702 5.294734 TGTAGCAGATTATGGCATCAAGA 57.705 39.130 1.65 0.00 0.00 3.02
1696 1703 5.059161 TGTAGCAGATTATGGCATCAAGAC 58.941 41.667 1.65 0.00 0.00 3.01
1697 1704 4.434545 AGCAGATTATGGCATCAAGACT 57.565 40.909 1.65 0.00 0.00 3.24
1698 1705 4.387598 AGCAGATTATGGCATCAAGACTC 58.612 43.478 1.65 0.00 0.00 3.36
1699 1706 4.102838 AGCAGATTATGGCATCAAGACTCT 59.897 41.667 1.65 0.00 0.00 3.24
1700 1707 4.451774 GCAGATTATGGCATCAAGACTCTC 59.548 45.833 1.65 0.00 0.00 3.20
1701 1708 5.742546 GCAGATTATGGCATCAAGACTCTCT 60.743 44.000 1.65 0.00 0.00 3.10
1702 1709 6.289834 CAGATTATGGCATCAAGACTCTCTT 58.710 40.000 1.65 0.00 37.14 2.85
1703 1710 6.424509 CAGATTATGGCATCAAGACTCTCTTC 59.575 42.308 1.65 0.00 33.78 2.87
1704 1711 5.946942 TTATGGCATCAAGACTCTCTTCT 57.053 39.130 1.65 0.00 33.78 2.85
1705 1712 7.508636 AGATTATGGCATCAAGACTCTCTTCTA 59.491 37.037 1.65 0.00 33.78 2.10
1706 1713 4.998671 TGGCATCAAGACTCTCTTCTAG 57.001 45.455 0.00 0.00 33.78 2.43
1707 1714 4.604156 TGGCATCAAGACTCTCTTCTAGA 58.396 43.478 0.00 0.00 33.78 2.43
1716 1723 3.576078 CTCTCTTCTAGAGGCTGGAGA 57.424 52.381 0.00 10.24 46.98 3.71
1717 1724 3.480470 CTCTCTTCTAGAGGCTGGAGAG 58.520 54.545 16.52 16.52 46.98 3.20
1718 1725 3.119319 TCTCTTCTAGAGGCTGGAGAGA 58.881 50.000 13.29 13.29 42.54 3.10
1719 1726 3.136443 TCTCTTCTAGAGGCTGGAGAGAG 59.864 52.174 13.29 10.32 42.54 3.20
1720 1727 1.956477 CTTCTAGAGGCTGGAGAGAGC 59.044 57.143 0.00 0.00 38.34 4.09
1721 1728 0.922626 TCTAGAGGCTGGAGAGAGCA 59.077 55.000 0.00 0.00 41.08 4.26
1722 1729 1.133823 TCTAGAGGCTGGAGAGAGCAG 60.134 57.143 0.00 0.00 41.08 4.24
1723 1730 0.922626 TAGAGGCTGGAGAGAGCAGA 59.077 55.000 0.00 0.00 41.08 4.26
1724 1731 0.396139 AGAGGCTGGAGAGAGCAGAG 60.396 60.000 0.00 0.00 41.08 3.35
1725 1732 0.684153 GAGGCTGGAGAGAGCAGAGT 60.684 60.000 0.00 0.00 41.08 3.24
1726 1733 0.628522 AGGCTGGAGAGAGCAGAGTA 59.371 55.000 0.00 0.00 41.08 2.59
1727 1734 1.006519 AGGCTGGAGAGAGCAGAGTAA 59.993 52.381 0.00 0.00 41.08 2.24
1728 1735 1.136110 GGCTGGAGAGAGCAGAGTAAC 59.864 57.143 0.00 0.00 41.08 2.50
1729 1736 1.136110 GCTGGAGAGAGCAGAGTAACC 59.864 57.143 0.00 0.00 38.95 2.85
1730 1737 1.754226 CTGGAGAGAGCAGAGTAACCC 59.246 57.143 0.00 0.00 0.00 4.11
1731 1738 1.359474 TGGAGAGAGCAGAGTAACCCT 59.641 52.381 0.00 0.00 0.00 4.34
1732 1739 2.581246 TGGAGAGAGCAGAGTAACCCTA 59.419 50.000 0.00 0.00 0.00 3.53
1733 1740 2.953648 GGAGAGAGCAGAGTAACCCTAC 59.046 54.545 0.00 0.00 0.00 3.18
1734 1741 2.953648 GAGAGAGCAGAGTAACCCTACC 59.046 54.545 0.00 0.00 0.00 3.18
1735 1742 2.312140 AGAGAGCAGAGTAACCCTACCA 59.688 50.000 0.00 0.00 0.00 3.25
1736 1743 3.097614 GAGAGCAGAGTAACCCTACCAA 58.902 50.000 0.00 0.00 0.00 3.67
1737 1744 2.832733 AGAGCAGAGTAACCCTACCAAC 59.167 50.000 0.00 0.00 0.00 3.77
1738 1745 2.565834 GAGCAGAGTAACCCTACCAACA 59.434 50.000 0.00 0.00 0.00 3.33
1739 1746 2.976882 AGCAGAGTAACCCTACCAACAA 59.023 45.455 0.00 0.00 0.00 2.83
1740 1747 3.072211 GCAGAGTAACCCTACCAACAAC 58.928 50.000 0.00 0.00 0.00 3.32
1741 1748 3.244457 GCAGAGTAACCCTACCAACAACT 60.244 47.826 0.00 0.00 0.00 3.16
1742 1749 4.566987 CAGAGTAACCCTACCAACAACTC 58.433 47.826 0.00 0.00 33.67 3.01
1743 1750 4.039973 CAGAGTAACCCTACCAACAACTCA 59.960 45.833 0.00 0.00 35.46 3.41
1744 1751 4.657039 AGAGTAACCCTACCAACAACTCAA 59.343 41.667 0.00 0.00 35.46 3.02
1745 1752 5.131475 AGAGTAACCCTACCAACAACTCAAA 59.869 40.000 0.00 0.00 35.46 2.69
1746 1753 5.374071 AGTAACCCTACCAACAACTCAAAG 58.626 41.667 0.00 0.00 0.00 2.77
1747 1754 4.513406 AACCCTACCAACAACTCAAAGA 57.487 40.909 0.00 0.00 0.00 2.52
1748 1755 4.513406 ACCCTACCAACAACTCAAAGAA 57.487 40.909 0.00 0.00 0.00 2.52
1749 1756 4.461198 ACCCTACCAACAACTCAAAGAAG 58.539 43.478 0.00 0.00 0.00 2.85
1750 1757 4.165372 ACCCTACCAACAACTCAAAGAAGA 59.835 41.667 0.00 0.00 0.00 2.87
1751 1758 5.130350 CCCTACCAACAACTCAAAGAAGAA 58.870 41.667 0.00 0.00 0.00 2.52
1752 1759 5.008712 CCCTACCAACAACTCAAAGAAGAAC 59.991 44.000 0.00 0.00 0.00 3.01
1753 1760 5.588648 CCTACCAACAACTCAAAGAAGAACA 59.411 40.000 0.00 0.00 0.00 3.18
1754 1761 5.310720 ACCAACAACTCAAAGAAGAACAC 57.689 39.130 0.00 0.00 0.00 3.32
1755 1762 4.142687 ACCAACAACTCAAAGAAGAACACG 60.143 41.667 0.00 0.00 0.00 4.49
1756 1763 4.094294 CCAACAACTCAAAGAAGAACACGA 59.906 41.667 0.00 0.00 0.00 4.35
1757 1764 4.859629 ACAACTCAAAGAAGAACACGAC 57.140 40.909 0.00 0.00 0.00 4.34
1758 1765 4.504858 ACAACTCAAAGAAGAACACGACT 58.495 39.130 0.00 0.00 0.00 4.18
1759 1766 4.567159 ACAACTCAAAGAAGAACACGACTC 59.433 41.667 0.00 0.00 0.00 3.36
1760 1767 3.718815 ACTCAAAGAAGAACACGACTCC 58.281 45.455 0.00 0.00 0.00 3.85
1761 1768 3.132289 ACTCAAAGAAGAACACGACTCCA 59.868 43.478 0.00 0.00 0.00 3.86
1762 1769 4.202264 ACTCAAAGAAGAACACGACTCCAT 60.202 41.667 0.00 0.00 0.00 3.41
1763 1770 4.307432 TCAAAGAAGAACACGACTCCATC 58.693 43.478 0.00 0.00 0.00 3.51
1764 1771 4.039245 TCAAAGAAGAACACGACTCCATCT 59.961 41.667 0.00 0.00 0.00 2.90
1765 1772 4.608948 AAGAAGAACACGACTCCATCTT 57.391 40.909 0.00 0.00 33.28 2.40
1766 1773 4.608948 AGAAGAACACGACTCCATCTTT 57.391 40.909 0.00 0.00 30.89 2.52
1767 1774 4.310769 AGAAGAACACGACTCCATCTTTG 58.689 43.478 0.00 0.00 30.89 2.77
1768 1775 3.753294 AGAACACGACTCCATCTTTGT 57.247 42.857 0.00 0.00 0.00 2.83
1769 1776 3.654414 AGAACACGACTCCATCTTTGTC 58.346 45.455 0.00 0.00 0.00 3.18
1770 1777 2.457366 ACACGACTCCATCTTTGTCC 57.543 50.000 0.00 0.00 0.00 4.02
1771 1778 1.691976 ACACGACTCCATCTTTGTCCA 59.308 47.619 0.00 0.00 0.00 4.02
1772 1779 2.104111 ACACGACTCCATCTTTGTCCAA 59.896 45.455 0.00 0.00 0.00 3.53
1773 1780 3.138304 CACGACTCCATCTTTGTCCAAA 58.862 45.455 0.00 0.00 0.00 3.28
1774 1781 3.187227 CACGACTCCATCTTTGTCCAAAG 59.813 47.826 12.51 12.51 46.82 2.77
1775 1782 2.160417 CGACTCCATCTTTGTCCAAAGC 59.840 50.000 13.64 0.00 45.48 3.51
1776 1783 2.154462 ACTCCATCTTTGTCCAAAGCG 58.846 47.619 13.64 8.03 45.48 4.68
1777 1784 2.224523 ACTCCATCTTTGTCCAAAGCGA 60.225 45.455 13.64 8.61 45.48 4.93
1778 1785 2.813754 CTCCATCTTTGTCCAAAGCGAA 59.186 45.455 13.64 0.00 45.48 4.70
1779 1786 3.218453 TCCATCTTTGTCCAAAGCGAAA 58.782 40.909 13.64 0.00 45.48 3.46
1780 1787 3.634448 TCCATCTTTGTCCAAAGCGAAAA 59.366 39.130 13.64 0.00 45.48 2.29
1781 1788 3.983344 CCATCTTTGTCCAAAGCGAAAAG 59.017 43.478 13.64 0.00 45.48 2.27
1782 1789 3.708563 TCTTTGTCCAAAGCGAAAAGG 57.291 42.857 13.64 0.00 45.48 3.11
1783 1790 3.283751 TCTTTGTCCAAAGCGAAAAGGA 58.716 40.909 13.64 0.00 45.48 3.36
1784 1791 3.697045 TCTTTGTCCAAAGCGAAAAGGAA 59.303 39.130 13.64 0.00 45.48 3.36
1785 1792 4.158764 TCTTTGTCCAAAGCGAAAAGGAAA 59.841 37.500 13.64 0.00 45.48 3.13
1786 1793 3.430333 TGTCCAAAGCGAAAAGGAAAC 57.570 42.857 0.00 0.00 0.00 2.78
1787 1794 2.223386 TGTCCAAAGCGAAAAGGAAACG 60.223 45.455 0.00 0.00 0.00 3.60
1788 1795 2.032426 GTCCAAAGCGAAAAGGAAACGA 59.968 45.455 0.00 0.00 0.00 3.85
1789 1796 2.683867 TCCAAAGCGAAAAGGAAACGAA 59.316 40.909 0.00 0.00 0.00 3.85
1790 1797 3.042887 CCAAAGCGAAAAGGAAACGAAG 58.957 45.455 0.00 0.00 0.00 3.79
1791 1798 2.401017 AAGCGAAAAGGAAACGAAGC 57.599 45.000 0.00 0.00 0.00 3.86
1792 1799 0.591659 AGCGAAAAGGAAACGAAGCC 59.408 50.000 0.00 0.00 0.00 4.35
1793 1800 0.724785 GCGAAAAGGAAACGAAGCCG 60.725 55.000 0.00 0.00 42.50 5.52
1803 1810 3.932289 CGAAGCCGTTCTCGTGTT 58.068 55.556 0.00 0.00 35.01 3.32
1804 1811 1.487231 CGAAGCCGTTCTCGTGTTG 59.513 57.895 0.00 0.00 35.01 3.33
1805 1812 1.860078 GAAGCCGTTCTCGTGTTGG 59.140 57.895 0.00 0.00 35.01 3.77
1806 1813 0.599204 GAAGCCGTTCTCGTGTTGGA 60.599 55.000 0.00 0.00 35.01 3.53
1807 1814 0.034896 AAGCCGTTCTCGTGTTGGAT 59.965 50.000 0.00 0.00 35.01 3.41
1808 1815 0.389948 AGCCGTTCTCGTGTTGGATC 60.390 55.000 0.00 0.00 35.01 3.36
1809 1816 0.669318 GCCGTTCTCGTGTTGGATCA 60.669 55.000 0.00 0.00 35.01 2.92
1810 1817 1.350193 CCGTTCTCGTGTTGGATCAG 58.650 55.000 0.00 0.00 35.01 2.90
1811 1818 1.350193 CGTTCTCGTGTTGGATCAGG 58.650 55.000 0.00 0.00 0.00 3.86
1812 1819 1.336887 CGTTCTCGTGTTGGATCAGGT 60.337 52.381 0.00 0.00 0.00 4.00
1813 1820 2.338500 GTTCTCGTGTTGGATCAGGTC 58.662 52.381 0.00 0.00 0.00 3.85
1821 1828 4.554036 GGATCAGGTCCAGCCCGC 62.554 72.222 0.00 0.00 46.96 6.13
1822 1829 4.554036 GATCAGGTCCAGCCCGCC 62.554 72.222 0.00 0.00 38.26 6.13
1839 1846 4.147322 CAGCCGTTTGCCGCGTAG 62.147 66.667 4.92 0.00 42.71 3.51
1840 1847 4.367023 AGCCGTTTGCCGCGTAGA 62.367 61.111 4.92 0.00 42.71 2.59
1841 1848 3.192922 GCCGTTTGCCGCGTAGAT 61.193 61.111 4.92 0.00 34.38 1.98
1842 1849 1.879430 GCCGTTTGCCGCGTAGATA 60.879 57.895 4.92 0.00 34.38 1.98
1843 1850 1.818221 GCCGTTTGCCGCGTAGATAG 61.818 60.000 4.92 0.00 34.38 2.08
1844 1851 0.248743 CCGTTTGCCGCGTAGATAGA 60.249 55.000 4.92 0.00 34.38 1.98
1845 1852 1.602165 CCGTTTGCCGCGTAGATAGAT 60.602 52.381 4.92 0.00 34.38 1.98
1846 1853 2.351060 CCGTTTGCCGCGTAGATAGATA 60.351 50.000 4.92 0.00 34.38 1.98
1847 1854 2.909244 CGTTTGCCGCGTAGATAGATAG 59.091 50.000 4.92 0.00 0.00 2.08
1848 1855 3.608707 CGTTTGCCGCGTAGATAGATAGT 60.609 47.826 4.92 0.00 0.00 2.12
2246 2255 0.452585 TGCATGGCGATTGTCACATG 59.547 50.000 0.00 0.00 42.61 3.21
2377 2387 0.035458 CAGCGTCCAAAAGGAGAGGT 59.965 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 3.785887 TCCCAAGTGATACCTAGCCAATT 59.214 43.478 0.00 0.00 0.00 2.32
125 126 3.380637 GGTAGATCTTCACGAAGTAGGCA 59.619 47.826 0.00 0.00 41.61 4.75
400 402 4.745125 TGCAAAGAGTATATAAGCAGCGAC 59.255 41.667 0.00 0.00 0.00 5.19
401 403 4.944048 TGCAAAGAGTATATAAGCAGCGA 58.056 39.130 0.00 0.00 0.00 4.93
409 411 8.907222 TCAATCAAGCATGCAAAGAGTATATA 57.093 30.769 21.98 0.00 0.00 0.86
438 440 5.106555 CGGACAAGTCAAGCAATCTTAACAT 60.107 40.000 2.29 0.00 0.00 2.71
516 521 4.684724 AGGGGTGATTAGACTACTTGACA 58.315 43.478 0.00 0.00 0.00 3.58
545 550 2.040779 GTGTAGAGGGGGAGGGGG 60.041 72.222 0.00 0.00 0.00 5.40
546 551 0.566176 TATGTGTAGAGGGGGAGGGG 59.434 60.000 0.00 0.00 0.00 4.79
547 552 1.220750 AGTATGTGTAGAGGGGGAGGG 59.779 57.143 0.00 0.00 0.00 4.30
548 553 2.777459 AGTATGTGTAGAGGGGGAGG 57.223 55.000 0.00 0.00 0.00 4.30
549 554 3.068307 CGAAAGTATGTGTAGAGGGGGAG 59.932 52.174 0.00 0.00 0.00 4.30
550 555 3.028850 CGAAAGTATGTGTAGAGGGGGA 58.971 50.000 0.00 0.00 0.00 4.81
551 556 3.028850 TCGAAAGTATGTGTAGAGGGGG 58.971 50.000 0.00 0.00 0.00 5.40
552 557 4.262079 GGATCGAAAGTATGTGTAGAGGGG 60.262 50.000 0.00 0.00 0.00 4.79
553 558 4.585162 AGGATCGAAAGTATGTGTAGAGGG 59.415 45.833 0.00 0.00 0.00 4.30
554 559 5.776173 AGGATCGAAAGTATGTGTAGAGG 57.224 43.478 0.00 0.00 0.00 3.69
555 560 7.012515 ACTGTAGGATCGAAAGTATGTGTAGAG 59.987 40.741 0.00 0.00 0.00 2.43
556 561 6.827251 ACTGTAGGATCGAAAGTATGTGTAGA 59.173 38.462 0.00 0.00 0.00 2.59
557 562 6.913132 CACTGTAGGATCGAAAGTATGTGTAG 59.087 42.308 0.00 0.00 0.00 2.74
558 563 6.679638 GCACTGTAGGATCGAAAGTATGTGTA 60.680 42.308 0.00 0.00 0.00 2.90
559 564 5.651530 CACTGTAGGATCGAAAGTATGTGT 58.348 41.667 0.00 0.00 0.00 3.72
560 565 4.504461 GCACTGTAGGATCGAAAGTATGTG 59.496 45.833 0.00 0.00 0.00 3.21
561 566 4.402793 AGCACTGTAGGATCGAAAGTATGT 59.597 41.667 0.00 0.00 0.00 2.29
562 567 4.938080 AGCACTGTAGGATCGAAAGTATG 58.062 43.478 0.00 0.00 0.00 2.39
563 568 4.890581 AGAGCACTGTAGGATCGAAAGTAT 59.109 41.667 0.00 0.00 0.00 2.12
564 569 4.270834 AGAGCACTGTAGGATCGAAAGTA 58.729 43.478 0.00 0.00 0.00 2.24
565 570 3.093057 AGAGCACTGTAGGATCGAAAGT 58.907 45.455 0.00 0.00 0.00 2.66
566 571 3.791973 AGAGCACTGTAGGATCGAAAG 57.208 47.619 0.00 0.00 0.00 2.62
567 572 4.537135 AAAGAGCACTGTAGGATCGAAA 57.463 40.909 0.00 0.00 0.00 3.46
568 573 4.021456 TGAAAAGAGCACTGTAGGATCGAA 60.021 41.667 0.00 0.00 0.00 3.71
569 574 3.509967 TGAAAAGAGCACTGTAGGATCGA 59.490 43.478 0.00 0.00 0.00 3.59
570 575 3.849911 TGAAAAGAGCACTGTAGGATCG 58.150 45.455 0.00 0.00 0.00 3.69
571 576 5.065731 CCATTGAAAAGAGCACTGTAGGATC 59.934 44.000 0.00 0.00 0.00 3.36
572 577 4.946157 CCATTGAAAAGAGCACTGTAGGAT 59.054 41.667 0.00 0.00 0.00 3.24
573 578 4.202461 ACCATTGAAAAGAGCACTGTAGGA 60.202 41.667 0.00 0.00 0.00 2.94
574 579 4.074970 ACCATTGAAAAGAGCACTGTAGG 58.925 43.478 0.00 0.00 0.00 3.18
575 580 5.695851 AACCATTGAAAAGAGCACTGTAG 57.304 39.130 0.00 0.00 0.00 2.74
576 581 7.255451 CCTTTAACCATTGAAAAGAGCACTGTA 60.255 37.037 0.00 0.00 33.05 2.74
577 582 6.461509 CCTTTAACCATTGAAAAGAGCACTGT 60.462 38.462 0.00 0.00 33.05 3.55
578 583 5.922544 CCTTTAACCATTGAAAAGAGCACTG 59.077 40.000 0.00 0.00 33.05 3.66
579 584 5.011023 CCCTTTAACCATTGAAAAGAGCACT 59.989 40.000 0.00 0.00 33.05 4.40
580 585 5.221441 ACCCTTTAACCATTGAAAAGAGCAC 60.221 40.000 0.00 0.00 33.05 4.40
581 586 4.898861 ACCCTTTAACCATTGAAAAGAGCA 59.101 37.500 0.00 0.00 33.05 4.26
582 587 5.010617 TCACCCTTTAACCATTGAAAAGAGC 59.989 40.000 0.00 0.00 33.05 4.09
583 588 6.265422 ACTCACCCTTTAACCATTGAAAAGAG 59.735 38.462 0.00 0.00 33.05 2.85
584 589 6.040391 CACTCACCCTTTAACCATTGAAAAGA 59.960 38.462 0.00 0.00 33.05 2.52
585 590 6.040391 TCACTCACCCTTTAACCATTGAAAAG 59.960 38.462 0.00 0.00 0.00 2.27
586 591 5.894393 TCACTCACCCTTTAACCATTGAAAA 59.106 36.000 0.00 0.00 0.00 2.29
587 592 5.450453 TCACTCACCCTTTAACCATTGAAA 58.550 37.500 0.00 0.00 0.00 2.69
588 593 5.055265 TCACTCACCCTTTAACCATTGAA 57.945 39.130 0.00 0.00 0.00 2.69
589 594 4.349636 TCTCACTCACCCTTTAACCATTGA 59.650 41.667 0.00 0.00 0.00 2.57
590 595 4.651778 TCTCACTCACCCTTTAACCATTG 58.348 43.478 0.00 0.00 0.00 2.82
591 596 4.993705 TCTCACTCACCCTTTAACCATT 57.006 40.909 0.00 0.00 0.00 3.16
592 597 4.993705 TTCTCACTCACCCTTTAACCAT 57.006 40.909 0.00 0.00 0.00 3.55
593 598 4.781775 TTTCTCACTCACCCTTTAACCA 57.218 40.909 0.00 0.00 0.00 3.67
594 599 6.940867 AGTTATTTCTCACTCACCCTTTAACC 59.059 38.462 0.00 0.00 0.00 2.85
595 600 7.981102 AGTTATTTCTCACTCACCCTTTAAC 57.019 36.000 0.00 0.00 0.00 2.01
598 603 9.232473 GAAATAGTTATTTCTCACTCACCCTTT 57.768 33.333 14.43 0.00 44.96 3.11
599 604 8.794335 GAAATAGTTATTTCTCACTCACCCTT 57.206 34.615 14.43 0.00 44.96 3.95
784 789 6.407525 GGCCTAGCTAGTATCCCTTCATTATG 60.408 46.154 19.31 0.00 0.00 1.90
787 792 3.841255 GGCCTAGCTAGTATCCCTTCATT 59.159 47.826 19.31 0.00 0.00 2.57
798 803 2.706190 CTGGGTATTTGGCCTAGCTAGT 59.294 50.000 19.31 2.36 0.00 2.57
805 810 0.331616 GTGGTCTGGGTATTTGGCCT 59.668 55.000 3.32 0.00 0.00 5.19
827 832 4.261197 CGGCTTTTGATGATAGGTTTAGGC 60.261 45.833 0.00 0.00 0.00 3.93
881 886 1.918293 TCAGATCGGTTGGTGCCCT 60.918 57.895 0.00 0.00 0.00 5.19
888 893 0.388520 TGAGTGCGTCAGATCGGTTG 60.389 55.000 0.00 0.00 0.00 3.77
894 899 1.001293 ACACATGTGAGTGCGTCAGAT 59.999 47.619 31.94 1.87 43.23 2.90
1088 1093 1.339055 CCTCCTCCGCATCAAAGACAA 60.339 52.381 0.00 0.00 0.00 3.18
1089 1094 0.250234 CCTCCTCCGCATCAAAGACA 59.750 55.000 0.00 0.00 0.00 3.41
1095 1100 0.036388 GTGTTTCCTCCTCCGCATCA 60.036 55.000 0.00 0.00 0.00 3.07
1187 1192 3.192633 TCGTCTTGAAGATCGTGATTCCA 59.807 43.478 13.75 0.00 0.00 3.53
1276 1283 0.601558 CTCGGGTCACTTTCTTCGGA 59.398 55.000 0.00 0.00 0.00 4.55
1325 1332 4.787280 CGCTCTCCTCCTGGGGGT 62.787 72.222 13.53 0.00 36.78 4.95
1399 1406 4.832608 GTAGGGTTGCTCCGGGCG 62.833 72.222 0.00 0.00 45.43 6.13
1400 1407 4.484872 GGTAGGGTTGCTCCGGGC 62.485 72.222 0.00 4.52 42.22 6.13
1401 1408 2.687566 AGGTAGGGTTGCTCCGGG 60.688 66.667 0.00 0.00 37.00 5.73
1402 1409 0.396695 TAGAGGTAGGGTTGCTCCGG 60.397 60.000 0.00 0.00 37.00 5.14
1403 1410 0.745468 GTAGAGGTAGGGTTGCTCCG 59.255 60.000 0.00 0.00 37.00 4.63
1404 1411 1.481363 GTGTAGAGGTAGGGTTGCTCC 59.519 57.143 0.00 0.00 0.00 4.70
1405 1412 1.481363 GGTGTAGAGGTAGGGTTGCTC 59.519 57.143 0.00 0.00 0.00 4.26
1406 1413 1.569653 GGTGTAGAGGTAGGGTTGCT 58.430 55.000 0.00 0.00 0.00 3.91
1407 1414 0.540454 GGGTGTAGAGGTAGGGTTGC 59.460 60.000 0.00 0.00 0.00 4.17
1408 1415 2.108970 GAGGGTGTAGAGGTAGGGTTG 58.891 57.143 0.00 0.00 0.00 3.77
1409 1416 1.720533 TGAGGGTGTAGAGGTAGGGTT 59.279 52.381 0.00 0.00 0.00 4.11
1410 1417 1.006878 GTGAGGGTGTAGAGGTAGGGT 59.993 57.143 0.00 0.00 0.00 4.34
1411 1418 1.288335 AGTGAGGGTGTAGAGGTAGGG 59.712 57.143 0.00 0.00 0.00 3.53
1412 1419 2.025226 TCAGTGAGGGTGTAGAGGTAGG 60.025 54.545 0.00 0.00 0.00 3.18
1413 1420 3.367646 TCAGTGAGGGTGTAGAGGTAG 57.632 52.381 0.00 0.00 0.00 3.18
1414 1421 3.820195 TTCAGTGAGGGTGTAGAGGTA 57.180 47.619 0.00 0.00 0.00 3.08
1415 1422 2.696526 TTCAGTGAGGGTGTAGAGGT 57.303 50.000 0.00 0.00 0.00 3.85
1416 1423 3.099905 TGATTCAGTGAGGGTGTAGAGG 58.900 50.000 0.00 0.00 0.00 3.69
1417 1424 3.430098 GCTGATTCAGTGAGGGTGTAGAG 60.430 52.174 14.90 0.00 33.43 2.43
1418 1425 2.497675 GCTGATTCAGTGAGGGTGTAGA 59.502 50.000 14.90 0.00 33.43 2.59
1419 1426 2.499289 AGCTGATTCAGTGAGGGTGTAG 59.501 50.000 14.90 0.00 33.43 2.74
1420 1427 2.234661 CAGCTGATTCAGTGAGGGTGTA 59.765 50.000 8.42 0.00 33.43 2.90
1421 1428 1.002888 CAGCTGATTCAGTGAGGGTGT 59.997 52.381 8.42 0.00 33.43 4.16
1422 1429 1.678123 CCAGCTGATTCAGTGAGGGTG 60.678 57.143 17.39 5.47 33.43 4.61
1423 1430 0.617413 CCAGCTGATTCAGTGAGGGT 59.383 55.000 17.39 0.00 33.43 4.34
1424 1431 0.747283 GCCAGCTGATTCAGTGAGGG 60.747 60.000 17.39 11.66 33.43 4.30
1425 1432 0.035725 TGCCAGCTGATTCAGTGAGG 60.036 55.000 17.39 14.06 33.43 3.86
1426 1433 2.039818 ATGCCAGCTGATTCAGTGAG 57.960 50.000 17.39 5.30 33.43 3.51
1427 1434 2.502142 AATGCCAGCTGATTCAGTGA 57.498 45.000 17.39 0.00 33.43 3.41
1428 1435 3.276857 AGTAATGCCAGCTGATTCAGTG 58.723 45.455 17.39 11.19 33.43 3.66
1429 1436 3.641434 AGTAATGCCAGCTGATTCAGT 57.359 42.857 17.39 11.59 33.43 3.41
1430 1437 3.943381 TGAAGTAATGCCAGCTGATTCAG 59.057 43.478 17.39 9.40 34.12 3.02
1431 1438 3.954200 TGAAGTAATGCCAGCTGATTCA 58.046 40.909 17.39 10.47 0.00 2.57
1432 1439 4.970662 TTGAAGTAATGCCAGCTGATTC 57.029 40.909 17.39 4.40 0.00 2.52
1433 1440 4.098960 CCATTGAAGTAATGCCAGCTGATT 59.901 41.667 17.39 10.62 43.90 2.57
1434 1441 3.635373 CCATTGAAGTAATGCCAGCTGAT 59.365 43.478 17.39 0.00 43.90 2.90
1435 1442 3.018856 CCATTGAAGTAATGCCAGCTGA 58.981 45.455 17.39 0.00 43.90 4.26
1436 1443 2.756760 ACCATTGAAGTAATGCCAGCTG 59.243 45.455 6.78 6.78 43.90 4.24
1437 1444 3.091633 ACCATTGAAGTAATGCCAGCT 57.908 42.857 0.00 0.00 43.90 4.24
1438 1445 3.874392 AACCATTGAAGTAATGCCAGC 57.126 42.857 0.00 0.00 43.90 4.85
1439 1446 6.071952 ACAGTTAACCATTGAAGTAATGCCAG 60.072 38.462 0.88 0.00 43.90 4.85
1440 1447 5.772672 ACAGTTAACCATTGAAGTAATGCCA 59.227 36.000 0.88 0.00 43.90 4.92
1441 1448 6.267496 ACAGTTAACCATTGAAGTAATGCC 57.733 37.500 0.88 0.00 43.90 4.40
1442 1449 8.726988 TCTTACAGTTAACCATTGAAGTAATGC 58.273 33.333 0.88 0.00 43.90 3.56
1447 1454 8.974060 TTCTTCTTACAGTTAACCATTGAAGT 57.026 30.769 17.45 5.14 32.74 3.01
1450 1457 9.403583 AGTTTTCTTCTTACAGTTAACCATTGA 57.596 29.630 0.88 0.00 0.00 2.57
1451 1458 9.450807 CAGTTTTCTTCTTACAGTTAACCATTG 57.549 33.333 0.88 0.00 0.00 2.82
1452 1459 9.403583 TCAGTTTTCTTCTTACAGTTAACCATT 57.596 29.630 0.88 0.00 0.00 3.16
1453 1460 8.974060 TCAGTTTTCTTCTTACAGTTAACCAT 57.026 30.769 0.88 0.00 0.00 3.55
1454 1461 8.795842 TTCAGTTTTCTTCTTACAGTTAACCA 57.204 30.769 0.88 0.00 0.00 3.67
1455 1462 9.106070 TCTTCAGTTTTCTTCTTACAGTTAACC 57.894 33.333 0.88 0.00 0.00 2.85
1460 1467 9.396022 TCATTTCTTCAGTTTTCTTCTTACAGT 57.604 29.630 0.00 0.00 0.00 3.55
1461 1468 9.875675 CTCATTTCTTCAGTTTTCTTCTTACAG 57.124 33.333 0.00 0.00 0.00 2.74
1462 1469 9.613428 TCTCATTTCTTCAGTTTTCTTCTTACA 57.387 29.630 0.00 0.00 0.00 2.41
1466 1473 8.945057 GCTATCTCATTTCTTCAGTTTTCTTCT 58.055 33.333 0.00 0.00 0.00 2.85
1467 1474 8.725148 TGCTATCTCATTTCTTCAGTTTTCTTC 58.275 33.333 0.00 0.00 0.00 2.87
1468 1475 8.510505 GTGCTATCTCATTTCTTCAGTTTTCTT 58.489 33.333 0.00 0.00 0.00 2.52
1469 1476 7.663081 TGTGCTATCTCATTTCTTCAGTTTTCT 59.337 33.333 0.00 0.00 0.00 2.52
1470 1477 7.810658 TGTGCTATCTCATTTCTTCAGTTTTC 58.189 34.615 0.00 0.00 0.00 2.29
1471 1478 7.750229 TGTGCTATCTCATTTCTTCAGTTTT 57.250 32.000 0.00 0.00 0.00 2.43
1472 1479 7.750229 TTGTGCTATCTCATTTCTTCAGTTT 57.250 32.000 0.00 0.00 0.00 2.66
1473 1480 7.750229 TTTGTGCTATCTCATTTCTTCAGTT 57.250 32.000 0.00 0.00 0.00 3.16
1474 1481 7.229306 TGTTTTGTGCTATCTCATTTCTTCAGT 59.771 33.333 0.00 0.00 0.00 3.41
1475 1482 7.587629 TGTTTTGTGCTATCTCATTTCTTCAG 58.412 34.615 0.00 0.00 0.00 3.02
1476 1483 7.509141 TGTTTTGTGCTATCTCATTTCTTCA 57.491 32.000 0.00 0.00 0.00 3.02
1477 1484 7.862372 TGTTGTTTTGTGCTATCTCATTTCTTC 59.138 33.333 0.00 0.00 0.00 2.87
1478 1485 7.715657 TGTTGTTTTGTGCTATCTCATTTCTT 58.284 30.769 0.00 0.00 0.00 2.52
1479 1486 7.275888 TGTTGTTTTGTGCTATCTCATTTCT 57.724 32.000 0.00 0.00 0.00 2.52
1480 1487 8.025445 AGATGTTGTTTTGTGCTATCTCATTTC 58.975 33.333 0.00 0.00 0.00 2.17
1481 1488 7.889469 AGATGTTGTTTTGTGCTATCTCATTT 58.111 30.769 0.00 0.00 0.00 2.32
1482 1489 7.458409 AGATGTTGTTTTGTGCTATCTCATT 57.542 32.000 0.00 0.00 0.00 2.57
1483 1490 8.743085 ATAGATGTTGTTTTGTGCTATCTCAT 57.257 30.769 0.00 0.00 0.00 2.90
1484 1491 9.098355 GTATAGATGTTGTTTTGTGCTATCTCA 57.902 33.333 0.00 0.00 0.00 3.27
1485 1492 9.098355 TGTATAGATGTTGTTTTGTGCTATCTC 57.902 33.333 0.00 0.00 0.00 2.75
1486 1493 9.448438 TTGTATAGATGTTGTTTTGTGCTATCT 57.552 29.630 0.00 0.00 0.00 1.98
1489 1496 9.838975 CATTTGTATAGATGTTGTTTTGTGCTA 57.161 29.630 0.00 0.00 0.00 3.49
1490 1497 8.575589 TCATTTGTATAGATGTTGTTTTGTGCT 58.424 29.630 0.00 0.00 0.00 4.40
1491 1498 8.741101 TCATTTGTATAGATGTTGTTTTGTGC 57.259 30.769 0.00 0.00 0.00 4.57
1495 1502 9.874205 CCCAATCATTTGTATAGATGTTGTTTT 57.126 29.630 0.00 0.00 0.00 2.43
1496 1503 9.253832 TCCCAATCATTTGTATAGATGTTGTTT 57.746 29.630 0.00 0.00 0.00 2.83
1497 1504 8.821686 TCCCAATCATTTGTATAGATGTTGTT 57.178 30.769 0.00 0.00 0.00 2.83
1498 1505 8.274322 TCTCCCAATCATTTGTATAGATGTTGT 58.726 33.333 0.00 0.00 0.00 3.32
1499 1506 8.562892 GTCTCCCAATCATTTGTATAGATGTTG 58.437 37.037 0.00 0.00 0.00 3.33
1500 1507 7.442364 CGTCTCCCAATCATTTGTATAGATGTT 59.558 37.037 0.00 0.00 0.00 2.71
1501 1508 6.931281 CGTCTCCCAATCATTTGTATAGATGT 59.069 38.462 0.00 0.00 0.00 3.06
1502 1509 6.369890 CCGTCTCCCAATCATTTGTATAGATG 59.630 42.308 0.00 0.00 0.00 2.90
1503 1510 6.043243 ACCGTCTCCCAATCATTTGTATAGAT 59.957 38.462 0.00 0.00 0.00 1.98
1504 1511 5.365605 ACCGTCTCCCAATCATTTGTATAGA 59.634 40.000 0.00 0.00 0.00 1.98
1505 1512 5.466728 CACCGTCTCCCAATCATTTGTATAG 59.533 44.000 0.00 0.00 0.00 1.31
1506 1513 5.129650 TCACCGTCTCCCAATCATTTGTATA 59.870 40.000 0.00 0.00 0.00 1.47
1507 1514 4.080582 TCACCGTCTCCCAATCATTTGTAT 60.081 41.667 0.00 0.00 0.00 2.29
1508 1515 3.262151 TCACCGTCTCCCAATCATTTGTA 59.738 43.478 0.00 0.00 0.00 2.41
1509 1516 2.039746 TCACCGTCTCCCAATCATTTGT 59.960 45.455 0.00 0.00 0.00 2.83
1510 1517 2.710377 TCACCGTCTCCCAATCATTTG 58.290 47.619 0.00 0.00 0.00 2.32
1511 1518 3.347216 CTTCACCGTCTCCCAATCATTT 58.653 45.455 0.00 0.00 0.00 2.32
1512 1519 2.941415 GCTTCACCGTCTCCCAATCATT 60.941 50.000 0.00 0.00 0.00 2.57
1513 1520 1.407437 GCTTCACCGTCTCCCAATCAT 60.407 52.381 0.00 0.00 0.00 2.45
1514 1521 0.036388 GCTTCACCGTCTCCCAATCA 60.036 55.000 0.00 0.00 0.00 2.57
1515 1522 0.250513 AGCTTCACCGTCTCCCAATC 59.749 55.000 0.00 0.00 0.00 2.67
1516 1523 0.693049 AAGCTTCACCGTCTCCCAAT 59.307 50.000 0.00 0.00 0.00 3.16
1517 1524 0.472471 AAAGCTTCACCGTCTCCCAA 59.528 50.000 0.00 0.00 0.00 4.12
1518 1525 1.001633 GTAAAGCTTCACCGTCTCCCA 59.998 52.381 0.00 0.00 0.00 4.37
1519 1526 1.001633 TGTAAAGCTTCACCGTCTCCC 59.998 52.381 0.00 0.00 0.00 4.30
1520 1527 2.450609 TGTAAAGCTTCACCGTCTCC 57.549 50.000 0.00 0.00 0.00 3.71
1534 1541 1.331138 CGACGGTGCCAAACTTGTAAA 59.669 47.619 0.00 0.00 0.00 2.01
1535 1542 0.938713 CGACGGTGCCAAACTTGTAA 59.061 50.000 0.00 0.00 0.00 2.41
1536 1543 0.104487 TCGACGGTGCCAAACTTGTA 59.896 50.000 0.00 0.00 0.00 2.41
1537 1544 1.153329 TCGACGGTGCCAAACTTGT 60.153 52.632 0.00 0.00 0.00 3.16
1538 1545 1.278637 GTCGACGGTGCCAAACTTG 59.721 57.895 0.00 0.00 0.00 3.16
1539 1546 2.241880 CGTCGACGGTGCCAAACTT 61.242 57.895 29.70 0.00 35.37 2.66
1540 1547 2.660552 CGTCGACGGTGCCAAACT 60.661 61.111 29.70 0.00 35.37 2.66
1570 1577 9.967451 TGGACCTAAACATTCACTATTTTATGA 57.033 29.630 0.00 0.00 0.00 2.15
1574 1581 9.088987 ACAATGGACCTAAACATTCACTATTTT 57.911 29.630 0.00 0.00 35.26 1.82
1575 1582 8.650143 ACAATGGACCTAAACATTCACTATTT 57.350 30.769 0.00 0.00 35.26 1.40
1576 1583 9.747898 TTACAATGGACCTAAACATTCACTATT 57.252 29.630 0.00 0.00 35.26 1.73
1577 1584 9.747898 TTTACAATGGACCTAAACATTCACTAT 57.252 29.630 0.00 0.00 35.26 2.12
1578 1585 9.747898 ATTTACAATGGACCTAAACATTCACTA 57.252 29.630 0.00 0.00 35.26 2.74
1579 1586 8.650143 ATTTACAATGGACCTAAACATTCACT 57.350 30.769 0.00 0.00 35.26 3.41
1580 1587 7.696453 CGATTTACAATGGACCTAAACATTCAC 59.304 37.037 0.00 0.00 35.26 3.18
1581 1588 7.627513 GCGATTTACAATGGACCTAAACATTCA 60.628 37.037 0.00 0.00 35.26 2.57
1582 1589 6.691388 GCGATTTACAATGGACCTAAACATTC 59.309 38.462 0.00 0.00 35.26 2.67
1583 1590 6.151985 TGCGATTTACAATGGACCTAAACATT 59.848 34.615 0.00 0.00 37.78 2.71
1584 1591 5.650266 TGCGATTTACAATGGACCTAAACAT 59.350 36.000 0.00 0.00 0.00 2.71
1585 1592 5.004448 TGCGATTTACAATGGACCTAAACA 58.996 37.500 0.00 0.00 0.00 2.83
1586 1593 5.106475 TGTGCGATTTACAATGGACCTAAAC 60.106 40.000 0.00 0.00 0.00 2.01
1587 1594 5.004448 TGTGCGATTTACAATGGACCTAAA 58.996 37.500 0.00 0.00 0.00 1.85
1588 1595 4.393680 GTGTGCGATTTACAATGGACCTAA 59.606 41.667 0.00 0.00 0.00 2.69
1589 1596 3.936453 GTGTGCGATTTACAATGGACCTA 59.064 43.478 0.00 0.00 0.00 3.08
1590 1597 2.747446 GTGTGCGATTTACAATGGACCT 59.253 45.455 0.00 0.00 0.00 3.85
1591 1598 2.486203 TGTGTGCGATTTACAATGGACC 59.514 45.455 0.00 0.00 0.00 4.46
1592 1599 3.747193 CTGTGTGCGATTTACAATGGAC 58.253 45.455 0.00 0.00 0.00 4.02
1593 1600 2.161410 GCTGTGTGCGATTTACAATGGA 59.839 45.455 0.00 0.00 0.00 3.41
1594 1601 2.518949 GCTGTGTGCGATTTACAATGG 58.481 47.619 0.00 0.00 0.00 3.16
1606 1613 3.414700 CCGTCCGAAGCTGTGTGC 61.415 66.667 0.00 0.00 43.29 4.57
1607 1614 0.670546 AATCCGTCCGAAGCTGTGTG 60.671 55.000 0.00 0.00 0.00 3.82
1608 1615 0.034896 AAATCCGTCCGAAGCTGTGT 59.965 50.000 0.00 0.00 0.00 3.72
1609 1616 0.443869 CAAATCCGTCCGAAGCTGTG 59.556 55.000 0.00 0.00 0.00 3.66
1610 1617 0.034896 ACAAATCCGTCCGAAGCTGT 59.965 50.000 0.00 0.00 0.00 4.40
1611 1618 1.156736 AACAAATCCGTCCGAAGCTG 58.843 50.000 0.00 0.00 0.00 4.24
1612 1619 1.892209 AAACAAATCCGTCCGAAGCT 58.108 45.000 0.00 0.00 0.00 3.74
1613 1620 2.997986 TCTAAACAAATCCGTCCGAAGC 59.002 45.455 0.00 0.00 0.00 3.86
1614 1621 3.617263 CCTCTAAACAAATCCGTCCGAAG 59.383 47.826 0.00 0.00 0.00 3.79
1615 1622 3.592059 CCTCTAAACAAATCCGTCCGAA 58.408 45.455 0.00 0.00 0.00 4.30
1616 1623 2.675889 GCCTCTAAACAAATCCGTCCGA 60.676 50.000 0.00 0.00 0.00 4.55
1617 1624 1.664151 GCCTCTAAACAAATCCGTCCG 59.336 52.381 0.00 0.00 0.00 4.79
1618 1625 1.664151 CGCCTCTAAACAAATCCGTCC 59.336 52.381 0.00 0.00 0.00 4.79
1619 1626 1.664151 CCGCCTCTAAACAAATCCGTC 59.336 52.381 0.00 0.00 0.00 4.79
1620 1627 1.677820 CCCGCCTCTAAACAAATCCGT 60.678 52.381 0.00 0.00 0.00 4.69
1621 1628 1.014352 CCCGCCTCTAAACAAATCCG 58.986 55.000 0.00 0.00 0.00 4.18
1622 1629 2.124277 ACCCGCCTCTAAACAAATCC 57.876 50.000 0.00 0.00 0.00 3.01
1623 1630 5.578776 CAATTACCCGCCTCTAAACAAATC 58.421 41.667 0.00 0.00 0.00 2.17
1624 1631 4.142249 GCAATTACCCGCCTCTAAACAAAT 60.142 41.667 0.00 0.00 0.00 2.32
1625 1632 3.191791 GCAATTACCCGCCTCTAAACAAA 59.808 43.478 0.00 0.00 0.00 2.83
1626 1633 2.750712 GCAATTACCCGCCTCTAAACAA 59.249 45.455 0.00 0.00 0.00 2.83
1627 1634 2.290387 TGCAATTACCCGCCTCTAAACA 60.290 45.455 0.00 0.00 0.00 2.83
1628 1635 2.354821 CTGCAATTACCCGCCTCTAAAC 59.645 50.000 0.00 0.00 0.00 2.01
1629 1636 2.639065 CTGCAATTACCCGCCTCTAAA 58.361 47.619 0.00 0.00 0.00 1.85
1630 1637 1.745827 GCTGCAATTACCCGCCTCTAA 60.746 52.381 0.00 0.00 0.00 2.10
1631 1638 0.179056 GCTGCAATTACCCGCCTCTA 60.179 55.000 0.00 0.00 0.00 2.43
1632 1639 1.452108 GCTGCAATTACCCGCCTCT 60.452 57.895 0.00 0.00 0.00 3.69
1633 1640 1.440145 GAGCTGCAATTACCCGCCTC 61.440 60.000 1.02 0.00 0.00 4.70
1634 1641 1.452108 GAGCTGCAATTACCCGCCT 60.452 57.895 1.02 0.00 0.00 5.52
1635 1642 1.312371 TTGAGCTGCAATTACCCGCC 61.312 55.000 1.02 0.00 0.00 6.13
1636 1643 0.740737 ATTGAGCTGCAATTACCCGC 59.259 50.000 1.02 0.00 44.68 6.13
1644 1651 2.414559 GCTTCGCTAAATTGAGCTGCAA 60.415 45.455 13.09 2.46 40.51 4.08
1645 1652 1.131126 GCTTCGCTAAATTGAGCTGCA 59.869 47.619 13.09 0.00 40.51 4.41
1646 1653 1.131126 TGCTTCGCTAAATTGAGCTGC 59.869 47.619 13.09 13.56 40.51 5.25
1647 1654 2.778659 GTGCTTCGCTAAATTGAGCTG 58.221 47.619 13.09 6.75 40.51 4.24
1648 1655 1.394917 CGTGCTTCGCTAAATTGAGCT 59.605 47.619 13.09 0.00 40.51 4.09
1649 1656 1.529826 CCGTGCTTCGCTAAATTGAGC 60.530 52.381 4.51 4.51 39.20 4.26
1650 1657 1.999735 TCCGTGCTTCGCTAAATTGAG 59.000 47.619 0.00 0.00 38.35 3.02
1651 1658 1.730064 GTCCGTGCTTCGCTAAATTGA 59.270 47.619 0.00 0.00 38.35 2.57
1652 1659 1.463056 TGTCCGTGCTTCGCTAAATTG 59.537 47.619 0.00 0.00 38.35 2.32
1653 1660 1.803334 TGTCCGTGCTTCGCTAAATT 58.197 45.000 0.00 0.00 38.35 1.82
1654 1661 1.665679 CATGTCCGTGCTTCGCTAAAT 59.334 47.619 0.00 0.00 38.35 1.40
1655 1662 1.075542 CATGTCCGTGCTTCGCTAAA 58.924 50.000 0.00 0.00 38.35 1.85
1656 1663 0.037697 ACATGTCCGTGCTTCGCTAA 60.038 50.000 0.00 0.00 38.35 3.09
1657 1664 0.812549 TACATGTCCGTGCTTCGCTA 59.187 50.000 0.00 0.00 38.35 4.26
1658 1665 0.458543 CTACATGTCCGTGCTTCGCT 60.459 55.000 0.00 0.00 38.35 4.93
1659 1666 1.999051 CTACATGTCCGTGCTTCGC 59.001 57.895 0.00 0.00 38.35 4.70
1660 1667 0.735978 TGCTACATGTCCGTGCTTCG 60.736 55.000 0.00 0.00 39.52 3.79
1661 1668 1.002366 CTGCTACATGTCCGTGCTTC 58.998 55.000 0.00 0.00 0.00 3.86
1662 1669 0.608130 TCTGCTACATGTCCGTGCTT 59.392 50.000 0.00 0.00 0.00 3.91
1663 1670 0.826715 ATCTGCTACATGTCCGTGCT 59.173 50.000 0.00 0.00 0.00 4.40
1664 1671 1.656652 AATCTGCTACATGTCCGTGC 58.343 50.000 0.00 3.82 0.00 5.34
1665 1672 3.742882 CCATAATCTGCTACATGTCCGTG 59.257 47.826 0.00 0.00 0.00 4.94
1666 1673 3.803715 GCCATAATCTGCTACATGTCCGT 60.804 47.826 0.00 0.00 0.00 4.69
1667 1674 2.738846 GCCATAATCTGCTACATGTCCG 59.261 50.000 0.00 0.00 0.00 4.79
1668 1675 3.743521 TGCCATAATCTGCTACATGTCC 58.256 45.455 0.00 0.00 0.00 4.02
1669 1676 4.999311 TGATGCCATAATCTGCTACATGTC 59.001 41.667 0.00 0.00 0.00 3.06
1670 1677 4.976864 TGATGCCATAATCTGCTACATGT 58.023 39.130 2.69 2.69 0.00 3.21
1671 1678 5.704053 TCTTGATGCCATAATCTGCTACATG 59.296 40.000 0.00 0.00 0.00 3.21
1672 1679 5.704515 GTCTTGATGCCATAATCTGCTACAT 59.295 40.000 0.00 0.00 0.00 2.29
1673 1680 5.059161 GTCTTGATGCCATAATCTGCTACA 58.941 41.667 0.00 0.00 0.00 2.74
1674 1681 5.303971 AGTCTTGATGCCATAATCTGCTAC 58.696 41.667 0.00 0.00 0.00 3.58
1675 1682 5.306419 AGAGTCTTGATGCCATAATCTGCTA 59.694 40.000 0.00 0.00 0.00 3.49
1676 1683 4.102838 AGAGTCTTGATGCCATAATCTGCT 59.897 41.667 0.00 0.00 0.00 4.24
1677 1684 4.387598 AGAGTCTTGATGCCATAATCTGC 58.612 43.478 0.00 0.00 0.00 4.26
1678 1685 5.856156 AGAGAGTCTTGATGCCATAATCTG 58.144 41.667 0.00 0.00 0.00 2.90
1679 1686 6.327104 AGAAGAGAGTCTTGATGCCATAATCT 59.673 38.462 0.00 0.00 36.73 2.40
1680 1687 6.523840 AGAAGAGAGTCTTGATGCCATAATC 58.476 40.000 0.00 0.00 36.73 1.75
1681 1688 6.497624 AGAAGAGAGTCTTGATGCCATAAT 57.502 37.500 0.00 0.00 36.73 1.28
1682 1689 5.946942 AGAAGAGAGTCTTGATGCCATAA 57.053 39.130 0.00 0.00 36.73 1.90
1683 1690 6.368805 TCTAGAAGAGAGTCTTGATGCCATA 58.631 40.000 0.00 0.00 36.73 2.74
1684 1691 5.207354 TCTAGAAGAGAGTCTTGATGCCAT 58.793 41.667 0.00 0.00 36.73 4.40
1685 1692 4.604156 TCTAGAAGAGAGTCTTGATGCCA 58.396 43.478 0.00 0.00 36.73 4.92
1686 1693 5.186996 CTCTAGAAGAGAGTCTTGATGCC 57.813 47.826 0.00 0.00 45.07 4.40
1697 1704 3.119319 TCTCTCCAGCCTCTAGAAGAGA 58.881 50.000 13.29 13.29 45.07 3.10
1698 1705 3.480470 CTCTCTCCAGCCTCTAGAAGAG 58.520 54.545 9.67 9.67 41.96 2.85
1699 1706 2.422803 GCTCTCTCCAGCCTCTAGAAGA 60.423 54.545 0.00 0.00 32.76 2.87
1700 1707 1.956477 GCTCTCTCCAGCCTCTAGAAG 59.044 57.143 0.00 0.00 32.76 2.85
1701 1708 1.286257 TGCTCTCTCCAGCCTCTAGAA 59.714 52.381 0.00 0.00 38.80 2.10
1702 1709 0.922626 TGCTCTCTCCAGCCTCTAGA 59.077 55.000 0.00 0.00 38.80 2.43
1703 1710 1.133823 TCTGCTCTCTCCAGCCTCTAG 60.134 57.143 0.00 0.00 38.80 2.43
1704 1711 0.922626 TCTGCTCTCTCCAGCCTCTA 59.077 55.000 0.00 0.00 38.80 2.43
1705 1712 0.396139 CTCTGCTCTCTCCAGCCTCT 60.396 60.000 0.00 0.00 38.80 3.69
1706 1713 0.684153 ACTCTGCTCTCTCCAGCCTC 60.684 60.000 0.00 0.00 38.80 4.70
1707 1714 0.628522 TACTCTGCTCTCTCCAGCCT 59.371 55.000 0.00 0.00 38.80 4.58
1708 1715 1.136110 GTTACTCTGCTCTCTCCAGCC 59.864 57.143 0.00 0.00 38.80 4.85
1709 1716 1.136110 GGTTACTCTGCTCTCTCCAGC 59.864 57.143 0.00 0.00 40.13 4.85
1710 1717 1.754226 GGGTTACTCTGCTCTCTCCAG 59.246 57.143 0.00 0.00 0.00 3.86
1711 1718 1.359474 AGGGTTACTCTGCTCTCTCCA 59.641 52.381 0.00 0.00 0.00 3.86
1712 1719 2.153034 AGGGTTACTCTGCTCTCTCC 57.847 55.000 0.00 0.00 0.00 3.71
1713 1720 2.953648 GGTAGGGTTACTCTGCTCTCTC 59.046 54.545 0.00 0.00 0.00 3.20
1714 1721 2.312140 TGGTAGGGTTACTCTGCTCTCT 59.688 50.000 0.00 0.00 0.00 3.10
1715 1722 2.736347 TGGTAGGGTTACTCTGCTCTC 58.264 52.381 0.00 0.00 0.00 3.20
1716 1723 2.832733 GTTGGTAGGGTTACTCTGCTCT 59.167 50.000 0.00 0.00 0.00 4.09
1717 1724 2.565834 TGTTGGTAGGGTTACTCTGCTC 59.434 50.000 0.00 0.00 0.00 4.26
1718 1725 2.616524 TGTTGGTAGGGTTACTCTGCT 58.383 47.619 0.00 0.00 0.00 4.24
1719 1726 3.072211 GTTGTTGGTAGGGTTACTCTGC 58.928 50.000 0.00 0.00 0.00 4.26
1720 1727 4.039973 TGAGTTGTTGGTAGGGTTACTCTG 59.960 45.833 0.00 0.00 33.50 3.35
1721 1728 4.228824 TGAGTTGTTGGTAGGGTTACTCT 58.771 43.478 0.00 0.00 33.50 3.24
1722 1729 4.612264 TGAGTTGTTGGTAGGGTTACTC 57.388 45.455 0.00 0.00 0.00 2.59
1723 1730 5.131475 TCTTTGAGTTGTTGGTAGGGTTACT 59.869 40.000 0.00 0.00 0.00 2.24
1724 1731 5.370679 TCTTTGAGTTGTTGGTAGGGTTAC 58.629 41.667 0.00 0.00 0.00 2.50
1725 1732 5.633655 TCTTTGAGTTGTTGGTAGGGTTA 57.366 39.130 0.00 0.00 0.00 2.85
1726 1733 4.513406 TCTTTGAGTTGTTGGTAGGGTT 57.487 40.909 0.00 0.00 0.00 4.11
1727 1734 4.165372 TCTTCTTTGAGTTGTTGGTAGGGT 59.835 41.667 0.00 0.00 0.00 4.34
1728 1735 4.714632 TCTTCTTTGAGTTGTTGGTAGGG 58.285 43.478 0.00 0.00 0.00 3.53
1729 1736 5.588648 TGTTCTTCTTTGAGTTGTTGGTAGG 59.411 40.000 0.00 0.00 0.00 3.18
1730 1737 6.487103 GTGTTCTTCTTTGAGTTGTTGGTAG 58.513 40.000 0.00 0.00 0.00 3.18
1731 1738 5.064198 CGTGTTCTTCTTTGAGTTGTTGGTA 59.936 40.000 0.00 0.00 0.00 3.25
1732 1739 4.142687 CGTGTTCTTCTTTGAGTTGTTGGT 60.143 41.667 0.00 0.00 0.00 3.67
1733 1740 4.094294 TCGTGTTCTTCTTTGAGTTGTTGG 59.906 41.667 0.00 0.00 0.00 3.77
1734 1741 5.022021 GTCGTGTTCTTCTTTGAGTTGTTG 58.978 41.667 0.00 0.00 0.00 3.33
1735 1742 4.935808 AGTCGTGTTCTTCTTTGAGTTGTT 59.064 37.500 0.00 0.00 0.00 2.83
1736 1743 4.504858 AGTCGTGTTCTTCTTTGAGTTGT 58.495 39.130 0.00 0.00 0.00 3.32
1737 1744 4.025647 GGAGTCGTGTTCTTCTTTGAGTTG 60.026 45.833 0.00 0.00 0.00 3.16
1738 1745 4.120589 GGAGTCGTGTTCTTCTTTGAGTT 58.879 43.478 0.00 0.00 0.00 3.01
1739 1746 3.132289 TGGAGTCGTGTTCTTCTTTGAGT 59.868 43.478 0.00 0.00 0.00 3.41
1740 1747 3.717707 TGGAGTCGTGTTCTTCTTTGAG 58.282 45.455 0.00 0.00 0.00 3.02
1741 1748 3.812156 TGGAGTCGTGTTCTTCTTTGA 57.188 42.857 0.00 0.00 0.00 2.69
1742 1749 4.310769 AGATGGAGTCGTGTTCTTCTTTG 58.689 43.478 0.00 0.00 0.00 2.77
1743 1750 4.608948 AGATGGAGTCGTGTTCTTCTTT 57.391 40.909 0.00 0.00 0.00 2.52
1744 1751 4.608948 AAGATGGAGTCGTGTTCTTCTT 57.391 40.909 0.00 0.00 0.00 2.52
1745 1752 4.202264 ACAAAGATGGAGTCGTGTTCTTCT 60.202 41.667 0.00 0.00 29.12 2.85
1746 1753 4.058817 ACAAAGATGGAGTCGTGTTCTTC 58.941 43.478 0.00 0.00 29.12 2.87
1747 1754 4.058817 GACAAAGATGGAGTCGTGTTCTT 58.941 43.478 0.00 0.00 32.34 2.52
1748 1755 3.555168 GGACAAAGATGGAGTCGTGTTCT 60.555 47.826 0.00 0.00 32.34 3.01
1749 1756 2.737252 GGACAAAGATGGAGTCGTGTTC 59.263 50.000 0.00 0.00 32.34 3.18
1750 1757 2.104111 TGGACAAAGATGGAGTCGTGTT 59.896 45.455 0.00 0.00 32.34 3.32
1751 1758 1.691976 TGGACAAAGATGGAGTCGTGT 59.308 47.619 0.00 0.00 34.10 4.49
1752 1759 2.455674 TGGACAAAGATGGAGTCGTG 57.544 50.000 0.00 0.00 33.18 4.35
1753 1760 3.485463 TTTGGACAAAGATGGAGTCGT 57.515 42.857 0.00 0.00 33.18 4.34
1764 1771 4.177783 GTTTCCTTTTCGCTTTGGACAAA 58.822 39.130 0.00 0.00 0.00 2.83
1765 1772 3.732471 CGTTTCCTTTTCGCTTTGGACAA 60.732 43.478 0.00 0.00 0.00 3.18
1766 1773 2.223386 CGTTTCCTTTTCGCTTTGGACA 60.223 45.455 0.00 0.00 0.00 4.02
1767 1774 2.032426 TCGTTTCCTTTTCGCTTTGGAC 59.968 45.455 0.00 0.00 0.00 4.02
1768 1775 2.290464 TCGTTTCCTTTTCGCTTTGGA 58.710 42.857 0.00 0.00 0.00 3.53
1769 1776 2.766970 TCGTTTCCTTTTCGCTTTGG 57.233 45.000 0.00 0.00 0.00 3.28
1770 1777 2.467673 GCTTCGTTTCCTTTTCGCTTTG 59.532 45.455 0.00 0.00 0.00 2.77
1771 1778 2.543031 GGCTTCGTTTCCTTTTCGCTTT 60.543 45.455 0.00 0.00 0.00 3.51
1772 1779 1.001706 GGCTTCGTTTCCTTTTCGCTT 60.002 47.619 0.00 0.00 0.00 4.68
1773 1780 0.591659 GGCTTCGTTTCCTTTTCGCT 59.408 50.000 0.00 0.00 0.00 4.93
1774 1781 0.724785 CGGCTTCGTTTCCTTTTCGC 60.725 55.000 0.00 0.00 0.00 4.70
1775 1782 0.584876 ACGGCTTCGTTTCCTTTTCG 59.415 50.000 0.00 0.00 45.87 3.46
1786 1793 1.487231 CAACACGAGAACGGCTTCG 59.513 57.895 0.00 3.66 44.46 3.79
1787 1794 0.599204 TCCAACACGAGAACGGCTTC 60.599 55.000 0.00 0.00 44.46 3.86
1788 1795 0.034896 ATCCAACACGAGAACGGCTT 59.965 50.000 0.00 0.00 44.46 4.35
1789 1796 0.389948 GATCCAACACGAGAACGGCT 60.390 55.000 0.00 0.00 44.46 5.52
1790 1797 0.669318 TGATCCAACACGAGAACGGC 60.669 55.000 0.00 0.00 44.46 5.68
1791 1798 1.350193 CTGATCCAACACGAGAACGG 58.650 55.000 0.00 0.00 44.46 4.44
1792 1799 1.336887 ACCTGATCCAACACGAGAACG 60.337 52.381 0.00 0.00 45.75 3.95
1793 1800 2.338500 GACCTGATCCAACACGAGAAC 58.662 52.381 0.00 0.00 0.00 3.01
1794 1801 2.743636 GACCTGATCCAACACGAGAA 57.256 50.000 0.00 0.00 0.00 2.87
1823 1830 2.287457 TATCTACGCGGCAAACGGCT 62.287 55.000 12.47 0.00 44.51 5.52
1824 1831 1.818221 CTATCTACGCGGCAAACGGC 61.818 60.000 12.47 0.00 44.51 5.68
1825 1832 0.248743 TCTATCTACGCGGCAAACGG 60.249 55.000 12.47 0.00 44.51 4.44
1827 1834 3.898529 ACTATCTATCTACGCGGCAAAC 58.101 45.455 12.47 0.00 0.00 2.93
1828 1835 4.579454 AACTATCTATCTACGCGGCAAA 57.421 40.909 12.47 0.00 0.00 3.68
1829 1836 4.758674 AGTAACTATCTATCTACGCGGCAA 59.241 41.667 12.47 0.00 0.00 4.52
1830 1837 4.321718 AGTAACTATCTATCTACGCGGCA 58.678 43.478 12.47 0.00 0.00 5.69
1831 1838 4.943142 AGTAACTATCTATCTACGCGGC 57.057 45.455 12.47 0.00 0.00 6.53
1832 1839 5.523188 CCCTAGTAACTATCTATCTACGCGG 59.477 48.000 12.47 0.00 0.00 6.46
1833 1840 5.523188 CCCCTAGTAACTATCTATCTACGCG 59.477 48.000 3.53 3.53 0.00 6.01
1834 1841 6.413892 ACCCCTAGTAACTATCTATCTACGC 58.586 44.000 0.00 0.00 0.00 4.42
1835 1842 7.336427 CCAACCCCTAGTAACTATCTATCTACG 59.664 44.444 0.00 0.00 0.00 3.51
1836 1843 7.614974 CCCAACCCCTAGTAACTATCTATCTAC 59.385 44.444 0.00 0.00 0.00 2.59
1837 1844 7.257677 CCCCAACCCCTAGTAACTATCTATCTA 60.258 44.444 0.00 0.00 0.00 1.98
1838 1845 6.470420 CCCCAACCCCTAGTAACTATCTATCT 60.470 46.154 0.00 0.00 0.00 1.98
1839 1846 5.720520 CCCCAACCCCTAGTAACTATCTATC 59.279 48.000 0.00 0.00 0.00 2.08
1840 1847 5.662597 CCCCAACCCCTAGTAACTATCTAT 58.337 45.833 0.00 0.00 0.00 1.98
1841 1848 4.696456 GCCCCAACCCCTAGTAACTATCTA 60.696 50.000 0.00 0.00 0.00 1.98
1842 1849 3.937751 CCCCAACCCCTAGTAACTATCT 58.062 50.000 0.00 0.00 0.00 1.98
1843 1850 2.371179 GCCCCAACCCCTAGTAACTATC 59.629 54.545 0.00 0.00 0.00 2.08
1844 1851 2.415624 GCCCCAACCCCTAGTAACTAT 58.584 52.381 0.00 0.00 0.00 2.12
1845 1852 1.883678 GCCCCAACCCCTAGTAACTA 58.116 55.000 0.00 0.00 0.00 2.24
1846 1853 1.269703 CGCCCCAACCCCTAGTAACT 61.270 60.000 0.00 0.00 0.00 2.24
1847 1854 1.222661 CGCCCCAACCCCTAGTAAC 59.777 63.158 0.00 0.00 0.00 2.50
1848 1855 2.672181 GCGCCCCAACCCCTAGTAA 61.672 63.158 0.00 0.00 0.00 2.24
1870 1877 4.020617 CTCAAGAGGCGCCACCCA 62.021 66.667 31.54 8.06 40.58 4.51
2084 2093 6.816640 GGATGCACCGTGTTATGTATATATGT 59.183 38.462 0.00 0.00 0.00 2.29
2246 2255 4.813697 GCTCTCTTGTCCATTCCTAACATC 59.186 45.833 0.00 0.00 0.00 3.06
2377 2387 3.733380 CGCACCATCAACAACAACAGAAA 60.733 43.478 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.