Multiple sequence alignment - TraesCS7A01G180000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G180000 chr7A 100.000 5834 0 0 1 5834 134518812 134512979 0.000000e+00 10774.0
1 TraesCS7A01G180000 chr7A 84.195 658 53 27 1081 1730 651086346 651086960 5.030000e-165 592.0
2 TraesCS7A01G180000 chr7A 87.760 384 40 7 116 495 77469197 77469577 5.370000e-120 442.0
3 TraesCS7A01G180000 chr7A 89.041 73 8 0 5434 5506 46625697 46625769 2.240000e-14 91.6
4 TraesCS7A01G180000 chr7A 89.041 73 8 0 5434 5506 46679023 46679095 2.240000e-14 91.6
5 TraesCS7A01G180000 chr7A 92.727 55 3 1 3345 3399 134515358 134515305 1.740000e-10 78.7
6 TraesCS7A01G180000 chr7A 92.727 55 3 1 3455 3508 134515468 134515414 1.740000e-10 78.7
7 TraesCS7A01G180000 chr7B 94.935 1856 68 16 1143 2978 97203059 97201210 0.000000e+00 2883.0
8 TraesCS7A01G180000 chr7B 93.097 1999 67 30 3027 4971 97200946 97198965 0.000000e+00 2861.0
9 TraesCS7A01G180000 chr7B 94.492 472 12 7 586 1047 97203957 97203490 0.000000e+00 715.0
10 TraesCS7A01G180000 chr7B 90.796 402 26 5 5232 5628 97198562 97198167 1.440000e-145 527.0
11 TraesCS7A01G180000 chr7B 94.652 187 10 0 5004 5190 97198883 97198697 2.060000e-74 291.0
12 TraesCS7A01G180000 chr7B 93.694 111 6 1 3402 3511 97200656 97200546 1.300000e-36 165.0
13 TraesCS7A01G180000 chr7B 80.000 205 30 9 2969 3165 738628401 738628602 2.190000e-29 141.0
14 TraesCS7A01G180000 chr7B 79.512 205 31 9 2969 3165 738758941 738759142 1.020000e-27 135.0
15 TraesCS7A01G180000 chr7B 87.143 70 8 1 5709 5778 628465827 628465759 1.740000e-10 78.7
16 TraesCS7A01G180000 chr7B 91.228 57 4 1 3345 3401 97200498 97200443 6.270000e-10 76.8
17 TraesCS7A01G180000 chr7B 100.000 31 0 0 5187 5217 97198593 97198563 2.270000e-04 58.4
18 TraesCS7A01G180000 chr7D 93.526 1869 65 21 1794 3634 135364924 135363084 0.000000e+00 2730.0
19 TraesCS7A01G180000 chr7D 92.534 1567 54 21 3669 5185 135363086 135361533 0.000000e+00 2187.0
20 TraesCS7A01G180000 chr7D 94.089 1218 43 10 592 1794 135366155 135364952 0.000000e+00 1823.0
21 TraesCS7A01G180000 chr7D 93.694 111 6 1 3402 3511 135363424 135363314 1.300000e-36 165.0
22 TraesCS7A01G180000 chr7D 79.397 199 31 9 2973 3165 537209158 537208964 1.320000e-26 132.0
23 TraesCS7A01G180000 chr7D 92.982 57 3 1 3345 3401 135363261 135363206 1.350000e-11 82.4
24 TraesCS7A01G180000 chr6A 83.692 650 55 26 1089 1730 12896675 12896069 3.050000e-157 566.0
25 TraesCS7A01G180000 chr6A 79.899 199 31 8 2973 3165 46302547 46302352 2.840000e-28 137.0
26 TraesCS7A01G180000 chr6A 76.119 201 36 10 2973 3166 11479961 11479766 1.730000e-15 95.3
27 TraesCS7A01G180000 chr6A 81.818 77 11 2 5430 5506 14204939 14205012 1.760000e-05 62.1
28 TraesCS7A01G180000 chr4A 83.435 658 58 27 1081 1730 440712264 440711650 1.100000e-156 564.0
29 TraesCS7A01G180000 chr4A 87.302 63 7 1 5443 5505 654897527 654897588 2.920000e-08 71.3
30 TraesCS7A01G180000 chr2D 85.000 500 65 9 1 495 14347183 14346689 3.140000e-137 499.0
31 TraesCS7A01G180000 chr2D 84.325 504 66 13 1 495 44472593 44472094 1.140000e-131 481.0
32 TraesCS7A01G180000 chr2D 82.635 501 78 9 1 495 158101133 158100636 8.980000e-118 435.0
33 TraesCS7A01G180000 chr3D 84.190 506 65 9 1 495 514006812 514006311 1.470000e-130 477.0
34 TraesCS7A01G180000 chr3D 84.350 492 60 14 1 486 39313192 39312712 3.180000e-127 466.0
35 TraesCS7A01G180000 chr3D 79.310 203 31 10 2973 3168 20330519 20330321 1.320000e-26 132.0
36 TraesCS7A01G180000 chr2B 83.400 500 70 10 1 493 74008735 74008242 8.910000e-123 451.0
37 TraesCS7A01G180000 chr5D 82.941 510 70 13 1 495 429981481 429980974 1.490000e-120 444.0
38 TraesCS7A01G180000 chr5D 79.397 199 33 6 2973 3165 437574699 437574895 3.670000e-27 134.0
39 TraesCS7A01G180000 chr5D 78.605 215 34 10 2969 3176 514508693 514508484 1.320000e-26 132.0
40 TraesCS7A01G180000 chr5D 95.000 40 2 0 5742 5781 529450237 529450198 4.880000e-06 63.9
41 TraesCS7A01G180000 chr4B 86.822 387 40 10 117 495 607839478 607839095 6.990000e-114 422.0
42 TraesCS7A01G180000 chr4B 79.703 202 29 10 2972 3165 493633921 493633724 1.020000e-27 135.0
43 TraesCS7A01G180000 chr2A 82.818 291 37 7 1 291 150120089 150120366 1.260000e-61 248.0
44 TraesCS7A01G180000 chr1A 80.095 211 27 14 2974 3176 13740601 13740398 6.090000e-30 143.0
45 TraesCS7A01G180000 chr1A 78.922 204 34 8 2973 3170 85356866 85356666 4.740000e-26 130.0
46 TraesCS7A01G180000 chr1A 78.607 201 34 8 2973 3166 556824261 556824459 2.210000e-24 124.0
47 TraesCS7A01G180000 chr5B 79.602 201 32 9 2972 3165 539933316 539933118 1.020000e-27 135.0
48 TraesCS7A01G180000 chr5B 95.000 40 2 0 5742 5781 460676325 460676364 4.880000e-06 63.9
49 TraesCS7A01G180000 chr3B 79.602 201 31 8 2972 3165 54467421 54467224 1.020000e-27 135.0
50 TraesCS7A01G180000 chr3B 100.000 30 0 0 5743 5772 674129900 674129871 8.170000e-04 56.5
51 TraesCS7A01G180000 chrUn 78.673 211 33 11 2973 3176 263441333 263441538 4.740000e-26 130.0
52 TraesCS7A01G180000 chrUn 77.778 198 38 5 2973 3165 136329588 136329392 3.690000e-22 117.0
53 TraesCS7A01G180000 chrUn 76.238 202 36 11 2972 3165 240836624 240836821 4.810000e-16 97.1
54 TraesCS7A01G180000 chrUn 90.323 62 5 1 2973 3033 379883054 379883115 4.850000e-11 80.5
55 TraesCS7A01G180000 chrUn 89.231 65 6 1 2973 3036 466515912 466515848 4.850000e-11 80.5
56 TraesCS7A01G180000 chrUn 92.500 40 3 0 5743 5782 105425009 105424970 2.270000e-04 58.4
57 TraesCS7A01G180000 chr6D 78.431 204 35 8 2973 3171 449277594 449277395 2.210000e-24 124.0
58 TraesCS7A01G180000 chr6D 83.146 89 12 2 2972 3058 357344451 357344538 1.740000e-10 78.7
59 TraesCS7A01G180000 chr6D 100.000 32 0 0 2988 3019 12995796 12995765 6.310000e-05 60.2
60 TraesCS7A01G180000 chr6D 92.308 39 3 0 5743 5781 276140629 276140667 8.170000e-04 56.5
61 TraesCS7A01G180000 chr1D 78.173 197 37 5 2973 3165 97779888 97780082 2.860000e-23 121.0
62 TraesCS7A01G180000 chr6B 89.744 78 8 0 5430 5507 514831759 514831682 3.720000e-17 100.0
63 TraesCS7A01G180000 chr6B 94.872 39 2 0 5743 5781 438098690 438098728 1.760000e-05 62.1
64 TraesCS7A01G180000 chr6B 80.822 73 14 0 5434 5506 22647536 22647608 2.270000e-04 58.4
65 TraesCS7A01G180000 chr6B 100.000 28 0 0 512 539 694625554 694625527 1.100000e-02 52.8
66 TraesCS7A01G180000 chr4D 75.127 197 32 11 2973 3165 456060540 456060357 6.270000e-10 76.8
67 TraesCS7A01G180000 chr1B 84.848 66 7 3 5441 5506 546501653 546501715 4.880000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G180000 chr7A 134512979 134518812 5833 True 3643.80 10774 95.151333 1 5834 3 chr7A.!!$R1 5833
1 TraesCS7A01G180000 chr7A 651086346 651086960 614 False 592.00 592 84.195000 1081 1730 1 chr7A.!!$F4 649
2 TraesCS7A01G180000 chr7B 97198167 97203957 5790 True 947.15 2883 94.111750 586 5628 8 chr7B.!!$R2 5042
3 TraesCS7A01G180000 chr7D 135361533 135366155 4622 True 1397.48 2730 93.365000 592 5185 5 chr7D.!!$R2 4593
4 TraesCS7A01G180000 chr6A 12896069 12896675 606 True 566.00 566 83.692000 1089 1730 1 chr6A.!!$R2 641
5 TraesCS7A01G180000 chr4A 440711650 440712264 614 True 564.00 564 83.435000 1081 1730 1 chr4A.!!$R1 649
6 TraesCS7A01G180000 chr3D 514006311 514006812 501 True 477.00 477 84.190000 1 495 1 chr3D.!!$R3 494
7 TraesCS7A01G180000 chr5D 429980974 429981481 507 True 444.00 444 82.941000 1 495 1 chr5D.!!$R1 494

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
38 39 0.237235 TTGCGTCCGTGAAAAGCATC 59.763 50.000 0.00 0.0 37.68 3.91 F
1324 1705 0.033781 TGGCATCCTTTTGCTGTTGC 59.966 50.000 0.00 0.0 42.38 4.17 F
1355 1736 1.153086 GATGGCTGGCCCTGTACTG 60.153 63.158 9.28 0.0 34.56 2.74 F
2345 2769 2.087009 GTCGTCCGGTTTCGCTCTG 61.087 63.158 0.00 0.0 34.56 3.35 F
2945 3371 0.609131 GTCCCACACCTTCCACCATG 60.609 60.000 0.00 0.0 0.00 3.66 F
2979 3405 0.870393 GGATCATACATGCAGTGGCG 59.130 55.000 0.00 0.0 45.35 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 2152 1.203001 TGAAACCATCCACTCCCCAAC 60.203 52.381 0.00 0.00 0.00 3.77 R
2345 2769 1.134068 GCAGACCCCCTTGATACCTTC 60.134 57.143 0.00 0.00 0.00 3.46 R
2745 3171 1.609208 AACTTGCCAGTGCTACTTGG 58.391 50.000 0.00 0.00 38.71 3.61 R
3787 4478 2.657484 CTTTGCATGATCGGCCGCAG 62.657 60.000 23.51 9.04 35.47 5.18 R
4750 5478 1.926511 GCATTGACGAAGCCCCACAG 61.927 60.000 0.00 0.00 0.00 3.66 R
4978 5707 5.359194 TCTTGTTTCACCTCCATAGATCC 57.641 43.478 0.00 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.569493 CCAGAGTCACGGTTTTGCG 59.431 57.895 0.00 0.00 0.00 4.85
31 32 3.015677 CGGTTTTGCGTCCGTGAA 58.984 55.556 0.00 0.00 41.58 3.18
33 34 0.248134 CGGTTTTGCGTCCGTGAAAA 60.248 50.000 0.00 0.00 41.58 2.29
38 39 0.237235 TTGCGTCCGTGAAAAGCATC 59.763 50.000 0.00 0.00 37.68 3.91
39 40 0.882484 TGCGTCCGTGAAAAGCATCA 60.882 50.000 0.00 0.00 32.43 3.07
73 74 0.601558 GAGTCACGGTTGTGCCTCTA 59.398 55.000 0.00 0.00 45.34 2.43
138 143 1.601903 AGTCACGATTTTGCTTTCGCA 59.398 42.857 0.00 0.00 46.24 5.10
159 164 0.874390 GAGCCACGATTGTGCTTTCA 59.126 50.000 7.65 0.00 45.04 2.69
189 194 3.470888 CCGTGCCTCCTCGGGAAT 61.471 66.667 0.00 0.00 42.71 3.01
241 250 1.213094 CGCGAGAGTCACGGTTTTGT 61.213 55.000 11.95 0.00 0.00 2.83
245 254 2.864343 CGAGAGTCACGGTTTTGTTTCT 59.136 45.455 1.62 0.00 0.00 2.52
246 255 3.302480 CGAGAGTCACGGTTTTGTTTCTG 60.302 47.826 1.62 0.00 0.00 3.02
277 286 2.767505 GGTTGTGATTTCGTGAGAGGT 58.232 47.619 0.00 0.00 43.69 3.85
296 305 4.735132 CGGGCGTGCCTCTTTCGA 62.735 66.667 11.25 0.00 36.10 3.71
368 393 6.031751 TGGTAAAAACCTATCAACATTGGC 57.968 37.500 0.00 0.00 0.00 4.52
405 430 1.026584 TCGACGCGAGGAATCCAATA 58.973 50.000 15.93 0.00 0.00 1.90
406 431 1.611977 TCGACGCGAGGAATCCAATAT 59.388 47.619 15.93 0.00 0.00 1.28
412 438 4.638421 ACGCGAGGAATCCAATATTGAAAA 59.362 37.500 15.93 2.56 0.00 2.29
413 439 5.299279 ACGCGAGGAATCCAATATTGAAAAT 59.701 36.000 15.93 4.79 0.00 1.82
417 443 7.492344 GCGAGGAATCCAATATTGAAAATGTTT 59.508 33.333 17.23 1.45 0.00 2.83
496 522 6.605471 AAAAAGGAAAACTCTCAGGTTGTT 57.395 33.333 0.00 0.00 0.00 2.83
497 523 6.605471 AAAAGGAAAACTCTCAGGTTGTTT 57.395 33.333 0.00 0.00 35.71 2.83
498 524 6.605471 AAAGGAAAACTCTCAGGTTGTTTT 57.395 33.333 0.00 0.00 43.68 2.43
499 525 6.605471 AAGGAAAACTCTCAGGTTGTTTTT 57.395 33.333 0.00 0.00 41.89 1.94
526 552 9.820229 TTTGCGACAAATACTTCTTAATTAGTG 57.180 29.630 1.63 0.00 0.00 2.74
527 553 8.766000 TGCGACAAATACTTCTTAATTAGTGA 57.234 30.769 0.00 0.00 0.00 3.41
528 554 9.378551 TGCGACAAATACTTCTTAATTAGTGAT 57.621 29.630 0.00 0.00 0.00 3.06
546 572 8.973835 TTAGTGATTTCGTTCAAAAACAAAGT 57.026 26.923 0.00 0.00 34.93 2.66
547 573 7.276953 AGTGATTTCGTTCAAAAACAAAGTG 57.723 32.000 0.00 0.00 34.93 3.16
548 574 6.310224 AGTGATTTCGTTCAAAAACAAAGTGG 59.690 34.615 0.00 0.00 34.93 4.00
549 575 4.912528 TTTCGTTCAAAAACAAAGTGGC 57.087 36.364 0.00 0.00 34.93 5.01
550 576 3.577649 TCGTTCAAAAACAAAGTGGCA 57.422 38.095 0.00 0.00 34.93 4.92
551 577 3.246619 TCGTTCAAAAACAAAGTGGCAC 58.753 40.909 10.29 10.29 34.93 5.01
552 578 2.027451 CGTTCAAAAACAAAGTGGCACG 59.973 45.455 12.71 0.15 34.93 5.34
553 579 2.990514 GTTCAAAAACAAAGTGGCACGT 59.009 40.909 12.71 6.02 35.36 4.49
554 580 3.305398 TCAAAAACAAAGTGGCACGTT 57.695 38.095 13.12 13.12 0.00 3.99
555 581 2.989840 TCAAAAACAAAGTGGCACGTTG 59.010 40.909 34.23 34.23 42.06 4.10
559 585 2.734276 ACAAAGTGGCACGTTGTTTT 57.266 40.000 35.38 20.15 45.86 2.43
560 586 3.033368 ACAAAGTGGCACGTTGTTTTT 57.967 38.095 35.38 19.84 45.86 1.94
578 604 2.588464 TTTTGGGTTCGCCTTATGGA 57.412 45.000 0.00 0.00 37.45 3.41
579 605 2.122783 TTTGGGTTCGCCTTATGGAG 57.877 50.000 0.00 0.00 37.45 3.86
580 606 0.988832 TTGGGTTCGCCTTATGGAGT 59.011 50.000 0.00 0.00 37.45 3.85
581 607 0.988832 TGGGTTCGCCTTATGGAGTT 59.011 50.000 0.00 0.00 37.45 3.01
582 608 2.189676 TGGGTTCGCCTTATGGAGTTA 58.810 47.619 0.00 0.00 37.45 2.24
583 609 2.775384 TGGGTTCGCCTTATGGAGTTAT 59.225 45.455 0.00 0.00 37.45 1.89
584 610 3.139077 GGGTTCGCCTTATGGAGTTATG 58.861 50.000 0.00 0.00 37.45 1.90
908 948 4.082523 CAGCGCCCGGAAGAGGAA 62.083 66.667 0.73 0.00 0.00 3.36
1122 1163 4.003788 CACCTCCCCGTGAGCGTT 62.004 66.667 0.00 0.00 39.98 4.84
1133 1180 2.291043 TGAGCGTTCCCCTCCCTTC 61.291 63.158 0.00 0.00 0.00 3.46
1139 1186 3.283467 TTCCCCTCCCTTCCCCTCC 62.283 68.421 0.00 0.00 0.00 4.30
1173 1550 2.433664 CGTACACCCGACCCAAGC 60.434 66.667 0.00 0.00 0.00 4.01
1189 1566 0.741221 AAGCGCTCGTCTCCATTTCC 60.741 55.000 12.06 0.00 0.00 3.13
1200 1577 4.481112 CATTTCCGCGCCTGTGCC 62.481 66.667 0.00 0.00 0.00 5.01
1254 1635 3.650298 ATGGCTTGCGGCTGGTGAT 62.650 57.895 0.00 0.00 41.46 3.06
1255 1636 3.512516 GGCTTGCGGCTGGTGATC 61.513 66.667 0.00 0.00 41.46 2.92
1324 1705 0.033781 TGGCATCCTTTTGCTGTTGC 59.966 50.000 0.00 0.00 42.38 4.17
1355 1736 1.153086 GATGGCTGGCCCTGTACTG 60.153 63.158 9.28 0.00 34.56 2.74
1570 1954 5.070685 GTGTATTTGGACTTTGGAGAACCT 58.929 41.667 0.00 0.00 37.04 3.50
1839 2252 5.907207 TCACTAGCCATAAGTCATTGAGTC 58.093 41.667 0.00 0.00 0.00 3.36
1847 2260 5.355350 CCATAAGTCATTGAGTCCCTGTTTC 59.645 44.000 0.00 0.00 0.00 2.78
1880 2293 9.196552 AGTTTTGTGAAAGAAAAGAAACTGAAG 57.803 29.630 0.00 0.00 39.92 3.02
1906 2320 8.184192 GTGACATTCATGATAACTTGTTTAGGG 58.816 37.037 0.00 0.00 0.00 3.53
2034 2458 8.743714 AGGAAAATCTTTATGGTGATGAAGAAC 58.256 33.333 0.00 0.00 37.64 3.01
2042 2466 7.630242 TTATGGTGATGAAGAACCTGAAATC 57.370 36.000 0.00 0.00 37.36 2.17
2099 2523 7.477494 CATTTCTGATGTCATTTATGTCTGCA 58.523 34.615 0.00 0.00 0.00 4.41
2120 2544 4.275196 GCATCAAGCTCTAGCAATGATTCA 59.725 41.667 16.16 0.00 42.91 2.57
2295 2719 2.116827 AAAATCCGGCCACATCGTTA 57.883 45.000 2.24 0.00 0.00 3.18
2345 2769 2.087009 GTCGTCCGGTTTCGCTCTG 61.087 63.158 0.00 0.00 34.56 3.35
2356 2780 3.619038 GGTTTCGCTCTGAAGGTATCAAG 59.381 47.826 0.00 0.00 37.67 3.02
2402 2826 2.092968 GCCACCTATGTCTGAACCATCA 60.093 50.000 0.00 0.00 0.00 3.07
2698 3124 4.355549 TCTTCCATTTTCATGCCCTCATT 58.644 39.130 0.00 0.00 0.00 2.57
2864 3290 8.978874 ATGACTTCATTTTACTGGTGCATATA 57.021 30.769 0.00 0.00 31.37 0.86
2898 3324 5.163447 CGACAATATGTCTTTGGTCCTAGGA 60.163 44.000 7.62 7.62 44.85 2.94
2902 3328 7.789831 ACAATATGTCTTTGGTCCTAGGATCTA 59.210 37.037 22.73 12.97 0.00 1.98
2930 3356 1.007387 CTTGCTTTGGTTGCGTCCC 60.007 57.895 0.00 0.00 0.00 4.46
2931 3357 1.733402 CTTGCTTTGGTTGCGTCCCA 61.733 55.000 0.00 0.00 0.00 4.37
2945 3371 0.609131 GTCCCACACCTTCCACCATG 60.609 60.000 0.00 0.00 0.00 3.66
2979 3405 0.870393 GGATCATACATGCAGTGGCG 59.130 55.000 0.00 0.00 45.35 5.69
3083 3748 8.629158 TCAGTCATTATTTGCTGTTAAAAGTGT 58.371 29.630 0.00 0.00 33.71 3.55
3274 3939 3.945285 GAGTGAAGGAACAGGTTGTTTGA 59.055 43.478 0.00 0.00 41.28 2.69
3315 3980 1.604278 GTGAACACAAGGGAAGCTCAC 59.396 52.381 0.00 0.00 0.00 3.51
3353 4043 6.964807 TTATTTATGAGCAGTGCATGGATT 57.035 33.333 19.20 0.00 0.00 3.01
3428 4118 4.685924 AGTTCCAATTTGTTTGTGAGCAG 58.314 39.130 0.00 0.00 33.15 4.24
3529 4219 9.399403 CTTCTAACTTTCTAAGCAAACAATTCC 57.601 33.333 0.00 0.00 0.00 3.01
3540 4230 5.351458 AGCAAACAATTCCACTCTTTTGTC 58.649 37.500 0.00 0.00 31.42 3.18
3543 4233 6.681368 GCAAACAATTCCACTCTTTTGTCTCT 60.681 38.462 0.00 0.00 31.42 3.10
3580 4270 2.757099 CACTGCAATCCTGGGGGC 60.757 66.667 0.00 0.00 0.00 5.80
3583 4273 2.037687 TGCAATCCTGGGGGCTTG 59.962 61.111 0.00 0.00 40.53 4.01
3589 4279 1.348775 ATCCTGGGGGCTTGAGCTAC 61.349 60.000 2.66 0.00 41.70 3.58
3677 4368 7.913674 TTTGTTTTGGTTAGAACAATGCTTT 57.086 28.000 2.92 0.00 43.08 3.51
3787 4478 1.205460 TGGTTTGGTAGAGGCCCCTC 61.205 60.000 0.00 6.20 43.03 4.30
3823 4514 5.324409 TGCAAAGGAAGTATCAGGTTTCAT 58.676 37.500 0.00 0.00 0.00 2.57
4023 4714 6.038603 TGCATTGCATAAGAGAAATACACTCC 59.961 38.462 7.38 0.00 32.46 3.85
4097 4822 6.112058 GTGCCTTTACAGAAGATCAGAAGAT 58.888 40.000 0.00 0.00 37.13 2.40
4188 4913 8.986477 AATGTTGTGATAACTTTATTGCCTTC 57.014 30.769 0.00 0.00 0.00 3.46
4405 5131 5.622346 AATCTCTGACCTATCTTTCCACC 57.378 43.478 0.00 0.00 0.00 4.61
4685 5413 9.736023 GTACATGATCAATACTATGCATATCGA 57.264 33.333 6.92 0.45 0.00 3.59
4687 5415 9.828039 ACATGATCAATACTATGCATATCGATT 57.172 29.630 6.92 4.67 0.00 3.34
4735 5463 8.853077 TCATGATGAAACTTGAGAGTAACAAT 57.147 30.769 0.00 0.00 34.21 2.71
4744 5472 5.238650 ACTTGAGAGTAACAATGTTTTCCGG 59.761 40.000 3.17 0.00 33.32 5.14
4978 5707 4.748102 TGTAGGAAAACTAGTTCGCTTGTG 59.252 41.667 8.95 0.00 33.67 3.33
4985 5714 5.599999 AACTAGTTCGCTTGTGGATCTAT 57.400 39.130 1.12 0.00 33.67 1.98
5031 5821 7.497595 ACTTCCTGATCGTGCTTGTAAATATA 58.502 34.615 0.00 0.00 0.00 0.86
5042 5832 9.512435 CGTGCTTGTAAATATAGTAGTGTACTT 57.488 33.333 0.00 0.00 40.14 2.24
5151 5941 7.825761 CCAATATCATATGAGAATGCACACCTA 59.174 37.037 11.78 0.00 0.00 3.08
5178 5968 6.095860 TGCAATCCTTCTGAGAACAATAATGG 59.904 38.462 0.00 0.00 0.00 3.16
5218 6115 9.515020 TCATTTGATTTACTTTGTTCTGAACAC 57.485 29.630 21.95 9.23 41.97 3.32
5219 6116 8.755018 CATTTGATTTACTTTGTTCTGAACACC 58.245 33.333 21.95 5.81 41.97 4.16
5220 6117 7.639113 TTGATTTACTTTGTTCTGAACACCT 57.361 32.000 21.95 10.17 41.97 4.00
5221 6118 7.259290 TGATTTACTTTGTTCTGAACACCTC 57.741 36.000 21.95 11.30 41.97 3.85
5222 6119 6.262273 TGATTTACTTTGTTCTGAACACCTCC 59.738 38.462 21.95 7.58 41.97 4.30
5223 6120 3.644966 ACTTTGTTCTGAACACCTCCA 57.355 42.857 21.95 5.29 41.97 3.86
5224 6121 3.279434 ACTTTGTTCTGAACACCTCCAC 58.721 45.455 21.95 0.00 41.97 4.02
5225 6122 2.341846 TTGTTCTGAACACCTCCACC 57.658 50.000 21.95 0.00 41.97 4.61
5226 6123 1.507140 TGTTCTGAACACCTCCACCT 58.493 50.000 18.69 0.00 36.25 4.00
5227 6124 1.140852 TGTTCTGAACACCTCCACCTG 59.859 52.381 18.69 0.00 36.25 4.00
5228 6125 1.141053 GTTCTGAACACCTCCACCTGT 59.859 52.381 15.34 0.00 0.00 4.00
5229 6126 1.507140 TCTGAACACCTCCACCTGTT 58.493 50.000 0.00 0.00 33.19 3.16
5230 6127 1.843851 TCTGAACACCTCCACCTGTTT 59.156 47.619 0.00 0.00 30.59 2.83
5252 6149 2.355615 GCTTGAGGAAAGGAAGGAGGAG 60.356 54.545 0.00 0.00 36.30 3.69
5253 6150 1.958288 TGAGGAAAGGAAGGAGGAGG 58.042 55.000 0.00 0.00 0.00 4.30
5254 6151 1.437149 TGAGGAAAGGAAGGAGGAGGA 59.563 52.381 0.00 0.00 0.00 3.71
5278 6175 7.492669 GGAAGATGACATCTAGAAAATCGACAA 59.507 37.037 18.24 0.00 39.08 3.18
5286 6183 8.393366 ACATCTAGAAAATCGACAATTGATGTG 58.607 33.333 13.59 0.00 44.12 3.21
5290 6187 1.392589 ATCGACAATTGATGTGGCCC 58.607 50.000 13.59 0.00 44.12 5.80
5291 6188 0.037447 TCGACAATTGATGTGGCCCA 59.963 50.000 13.59 0.00 44.12 5.36
5310 6211 1.211457 CAACAGGAAGGAGGGAGATGG 59.789 57.143 0.00 0.00 0.00 3.51
5312 6213 0.984961 CAGGAAGGAGGGAGATGGCA 60.985 60.000 0.00 0.00 0.00 4.92
5314 6215 0.849417 GGAAGGAGGGAGATGGCATT 59.151 55.000 0.00 0.00 0.00 3.56
5342 6243 2.561478 TCAAAGTTTTCCTCCTCCCG 57.439 50.000 0.00 0.00 0.00 5.14
5343 6244 1.772453 TCAAAGTTTTCCTCCTCCCGT 59.228 47.619 0.00 0.00 0.00 5.28
5345 6246 2.271944 AAGTTTTCCTCCTCCCGTTG 57.728 50.000 0.00 0.00 0.00 4.10
5347 6248 1.074248 TTTTCCTCCTCCCGTTGGC 59.926 57.895 0.00 0.00 0.00 4.52
5348 6249 2.741486 TTTTCCTCCTCCCGTTGGCG 62.741 60.000 0.00 0.00 37.95 5.69
5391 6293 4.760047 CGTGAAGGTGCGGAGGGG 62.760 72.222 0.00 0.00 0.00 4.79
5435 6337 2.604686 TGCAGAGGACCTCGCCTT 60.605 61.111 25.46 5.67 38.73 4.35
5439 6341 1.915769 AGAGGACCTCGCCTTGCTT 60.916 57.895 15.97 0.00 38.73 3.91
5469 6371 1.496060 ATTCATCGCTAGGTGGTCCA 58.504 50.000 0.00 0.00 35.89 4.02
5474 6376 0.535335 TCGCTAGGTGGTCCATCAAC 59.465 55.000 4.57 0.00 35.89 3.18
5516 6418 2.366916 CTCTGGTGTTCAAGTGACCTCT 59.633 50.000 0.00 0.00 0.00 3.69
5528 6430 2.757868 AGTGACCTCTATGAGAGCACAC 59.242 50.000 16.33 16.33 40.98 3.82
5547 6449 1.148157 CGGCAAGCTGATACTGGTCG 61.148 60.000 0.00 0.00 31.39 4.79
5558 6460 5.277828 GCTGATACTGGTCGTTTTCAAAACT 60.278 40.000 11.23 0.00 0.00 2.66
5561 6463 4.091453 ACTGGTCGTTTTCAAAACTGTG 57.909 40.909 11.23 0.00 0.00 3.66
5564 6466 3.754323 TGGTCGTTTTCAAAACTGTGTCT 59.246 39.130 11.23 0.00 0.00 3.41
5565 6467 4.142773 TGGTCGTTTTCAAAACTGTGTCTC 60.143 41.667 11.23 0.00 0.00 3.36
5569 6471 4.351192 GTTTTCAAAACTGTGTCTCGCAT 58.649 39.130 5.71 0.00 0.00 4.73
5640 6542 5.432885 TCGGAAGAATTGTTGAAAAGGAC 57.567 39.130 0.00 0.00 37.03 3.85
5641 6543 4.277423 TCGGAAGAATTGTTGAAAAGGACC 59.723 41.667 0.00 0.00 37.03 4.46
5642 6544 4.037446 CGGAAGAATTGTTGAAAAGGACCA 59.963 41.667 0.00 0.00 0.00 4.02
5643 6545 5.278957 CGGAAGAATTGTTGAAAAGGACCAT 60.279 40.000 0.00 0.00 0.00 3.55
5644 6546 6.159293 GGAAGAATTGTTGAAAAGGACCATC 58.841 40.000 0.00 0.00 0.00 3.51
5645 6547 6.239289 GGAAGAATTGTTGAAAAGGACCATCA 60.239 38.462 0.00 0.00 0.00 3.07
5646 6548 6.336842 AGAATTGTTGAAAAGGACCATCAG 57.663 37.500 0.00 0.00 0.00 2.90
5647 6549 5.835280 AGAATTGTTGAAAAGGACCATCAGT 59.165 36.000 0.00 0.00 0.00 3.41
5648 6550 7.004086 AGAATTGTTGAAAAGGACCATCAGTA 58.996 34.615 0.00 0.00 0.00 2.74
5649 6551 6.824305 ATTGTTGAAAAGGACCATCAGTAG 57.176 37.500 0.00 0.00 0.00 2.57
5650 6552 5.560722 TGTTGAAAAGGACCATCAGTAGA 57.439 39.130 0.00 0.00 0.00 2.59
5651 6553 5.935945 TGTTGAAAAGGACCATCAGTAGAA 58.064 37.500 0.00 0.00 0.00 2.10
5652 6554 6.542821 TGTTGAAAAGGACCATCAGTAGAAT 58.457 36.000 0.00 0.00 0.00 2.40
5653 6555 7.685481 TGTTGAAAAGGACCATCAGTAGAATA 58.315 34.615 0.00 0.00 0.00 1.75
5654 6556 7.824289 TGTTGAAAAGGACCATCAGTAGAATAG 59.176 37.037 0.00 0.00 0.00 1.73
5655 6557 7.733773 TGAAAAGGACCATCAGTAGAATAGA 57.266 36.000 0.00 0.00 0.00 1.98
5656 6558 7.786030 TGAAAAGGACCATCAGTAGAATAGAG 58.214 38.462 0.00 0.00 0.00 2.43
5657 6559 7.400339 TGAAAAGGACCATCAGTAGAATAGAGT 59.600 37.037 0.00 0.00 0.00 3.24
5658 6560 7.741554 AAAGGACCATCAGTAGAATAGAGTT 57.258 36.000 0.00 0.00 0.00 3.01
5659 6561 6.723298 AGGACCATCAGTAGAATAGAGTTG 57.277 41.667 0.00 0.00 0.00 3.16
5660 6562 5.069781 AGGACCATCAGTAGAATAGAGTTGC 59.930 44.000 0.00 0.00 0.00 4.17
5661 6563 5.069781 GGACCATCAGTAGAATAGAGTTGCT 59.930 44.000 0.00 0.00 0.00 3.91
5662 6564 6.407525 GGACCATCAGTAGAATAGAGTTGCTT 60.408 42.308 0.00 0.00 0.00 3.91
5663 6565 6.344500 ACCATCAGTAGAATAGAGTTGCTTG 58.656 40.000 0.00 0.00 0.00 4.01
5664 6566 5.757320 CCATCAGTAGAATAGAGTTGCTTGG 59.243 44.000 0.00 0.00 0.00 3.61
5665 6567 6.344500 CATCAGTAGAATAGAGTTGCTTGGT 58.656 40.000 0.00 0.00 0.00 3.67
5666 6568 7.417911 CCATCAGTAGAATAGAGTTGCTTGGTA 60.418 40.741 0.00 0.00 0.00 3.25
5667 6569 7.476540 TCAGTAGAATAGAGTTGCTTGGTAA 57.523 36.000 0.00 0.00 0.00 2.85
5668 6570 8.079211 TCAGTAGAATAGAGTTGCTTGGTAAT 57.921 34.615 0.00 0.00 0.00 1.89
5669 6571 8.540388 TCAGTAGAATAGAGTTGCTTGGTAATT 58.460 33.333 0.00 0.00 0.00 1.40
5670 6572 9.167311 CAGTAGAATAGAGTTGCTTGGTAATTT 57.833 33.333 0.00 0.00 0.00 1.82
5671 6573 9.740710 AGTAGAATAGAGTTGCTTGGTAATTTT 57.259 29.630 0.00 0.00 0.00 1.82
5684 6586 9.921637 TGCTTGGTAATTTTTATAGAACTTTGG 57.078 29.630 0.00 0.00 0.00 3.28
5685 6587 9.366216 GCTTGGTAATTTTTATAGAACTTTGGG 57.634 33.333 0.00 0.00 0.00 4.12
5688 6590 9.589461 TGGTAATTTTTATAGAACTTTGGGTGA 57.411 29.630 0.00 0.00 0.00 4.02
5696 6598 9.753674 TTTATAGAACTTTGGGTGATTCAATCT 57.246 29.630 0.00 0.00 0.00 2.40
5697 6599 7.872113 ATAGAACTTTGGGTGATTCAATCTC 57.128 36.000 0.00 0.00 0.00 2.75
5698 6600 5.885465 AGAACTTTGGGTGATTCAATCTCT 58.115 37.500 0.00 0.00 0.00 3.10
5699 6601 7.020827 AGAACTTTGGGTGATTCAATCTCTA 57.979 36.000 0.00 0.00 0.00 2.43
5700 6602 6.881602 AGAACTTTGGGTGATTCAATCTCTAC 59.118 38.462 0.00 0.00 0.00 2.59
5701 6603 6.380079 ACTTTGGGTGATTCAATCTCTACT 57.620 37.500 0.00 0.00 0.00 2.57
5702 6604 7.496346 ACTTTGGGTGATTCAATCTCTACTA 57.504 36.000 0.00 0.00 0.00 1.82
5703 6605 7.331791 ACTTTGGGTGATTCAATCTCTACTAC 58.668 38.462 0.00 0.00 0.00 2.73
5704 6606 7.181125 ACTTTGGGTGATTCAATCTCTACTACT 59.819 37.037 0.00 0.00 0.00 2.57
5705 6607 7.496346 TTGGGTGATTCAATCTCTACTACTT 57.504 36.000 0.00 0.00 0.00 2.24
5706 6608 7.496346 TGGGTGATTCAATCTCTACTACTTT 57.504 36.000 0.00 0.00 0.00 2.66
5707 6609 7.331026 TGGGTGATTCAATCTCTACTACTTTG 58.669 38.462 0.00 0.00 0.00 2.77
5708 6610 7.038302 TGGGTGATTCAATCTCTACTACTTTGT 60.038 37.037 0.00 0.00 0.00 2.83
5709 6611 7.492994 GGGTGATTCAATCTCTACTACTTTGTC 59.507 40.741 0.00 0.00 0.00 3.18
5710 6612 7.492994 GGTGATTCAATCTCTACTACTTTGTCC 59.507 40.741 0.00 0.00 0.00 4.02
5711 6613 7.221067 GTGATTCAATCTCTACTACTTTGTCCG 59.779 40.741 0.00 0.00 0.00 4.79
5712 6614 6.829229 TTCAATCTCTACTACTTTGTCCGA 57.171 37.500 0.00 0.00 0.00 4.55
5713 6615 7.406031 TTCAATCTCTACTACTTTGTCCGAT 57.594 36.000 0.00 0.00 0.00 4.18
5714 6616 7.406031 TCAATCTCTACTACTTTGTCCGATT 57.594 36.000 0.00 0.00 0.00 3.34
5715 6617 7.481642 TCAATCTCTACTACTTTGTCCGATTC 58.518 38.462 0.00 0.00 0.00 2.52
5716 6618 7.122204 TCAATCTCTACTACTTTGTCCGATTCA 59.878 37.037 0.00 0.00 0.00 2.57
5717 6619 7.589958 ATCTCTACTACTTTGTCCGATTCAT 57.410 36.000 0.00 0.00 0.00 2.57
5718 6620 8.693120 ATCTCTACTACTTTGTCCGATTCATA 57.307 34.615 0.00 0.00 0.00 2.15
5719 6621 8.693120 TCTCTACTACTTTGTCCGATTCATAT 57.307 34.615 0.00 0.00 0.00 1.78
5720 6622 9.132923 TCTCTACTACTTTGTCCGATTCATATT 57.867 33.333 0.00 0.00 0.00 1.28
5728 6630 9.173021 ACTTTGTCCGATTCATATTAATTGTCA 57.827 29.630 0.00 0.00 0.00 3.58
5729 6631 9.438291 CTTTGTCCGATTCATATTAATTGTCAC 57.562 33.333 0.00 0.00 0.00 3.67
5730 6632 7.490962 TGTCCGATTCATATTAATTGTCACC 57.509 36.000 0.00 0.00 0.00 4.02
5731 6633 7.051000 TGTCCGATTCATATTAATTGTCACCA 58.949 34.615 0.00 0.00 0.00 4.17
5732 6634 7.554476 TGTCCGATTCATATTAATTGTCACCAA 59.446 33.333 0.00 0.00 34.45 3.67
5733 6635 8.567948 GTCCGATTCATATTAATTGTCACCAAT 58.432 33.333 0.00 0.00 43.14 3.16
5735 6637 9.398170 CCGATTCATATTAATTGTCACCAATTC 57.602 33.333 4.09 0.00 45.92 2.17
5736 6638 9.949174 CGATTCATATTAATTGTCACCAATTCA 57.051 29.630 4.09 0.00 45.92 2.57
5753 6655 9.669353 CACCAATTCAGTACATATTAAATCAGC 57.331 33.333 0.00 0.00 0.00 4.26
5754 6656 9.407380 ACCAATTCAGTACATATTAAATCAGCA 57.593 29.630 0.00 0.00 0.00 4.41
5772 6674 7.984422 ATCAGCAACAATTAATATGGATCGA 57.016 32.000 0.00 0.00 0.00 3.59
5773 6675 7.800155 TCAGCAACAATTAATATGGATCGAA 57.200 32.000 0.00 0.00 0.00 3.71
5774 6676 7.864686 TCAGCAACAATTAATATGGATCGAAG 58.135 34.615 0.00 0.00 0.00 3.79
5775 6677 6.580041 CAGCAACAATTAATATGGATCGAAGC 59.420 38.462 0.00 0.00 0.00 3.86
5776 6678 5.565259 GCAACAATTAATATGGATCGAAGCG 59.435 40.000 0.00 0.00 0.00 4.68
5777 6679 6.565811 GCAACAATTAATATGGATCGAAGCGA 60.566 38.462 0.00 0.00 41.13 4.93
5778 6680 6.712241 ACAATTAATATGGATCGAAGCGAG 57.288 37.500 0.00 0.00 39.91 5.03
5779 6681 6.223852 ACAATTAATATGGATCGAAGCGAGT 58.776 36.000 0.00 0.00 39.91 4.18
5780 6682 7.375834 ACAATTAATATGGATCGAAGCGAGTA 58.624 34.615 0.00 0.00 39.91 2.59
5781 6683 7.542477 ACAATTAATATGGATCGAAGCGAGTAG 59.458 37.037 0.00 0.00 39.91 2.57
5782 6684 6.812879 TTAATATGGATCGAAGCGAGTAGA 57.187 37.500 0.00 0.00 39.91 2.59
5783 6685 5.707242 AATATGGATCGAAGCGAGTAGAA 57.293 39.130 0.00 0.00 39.91 2.10
5784 6686 5.707242 ATATGGATCGAAGCGAGTAGAAA 57.293 39.130 0.00 0.00 39.91 2.52
5785 6687 3.861276 TGGATCGAAGCGAGTAGAAAA 57.139 42.857 0.00 0.00 39.91 2.29
5786 6688 4.182693 TGGATCGAAGCGAGTAGAAAAA 57.817 40.909 0.00 0.00 39.91 1.94
5807 6709 4.813296 AAGTAGTGTTTCTCTTTTGCCG 57.187 40.909 0.00 0.00 0.00 5.69
5808 6710 3.139077 AGTAGTGTTTCTCTTTTGCCGG 58.861 45.455 0.00 0.00 0.00 6.13
5809 6711 1.318576 AGTGTTTCTCTTTTGCCGGG 58.681 50.000 2.18 0.00 0.00 5.73
5810 6712 0.318699 GTGTTTCTCTTTTGCCGGGC 60.319 55.000 13.32 13.32 0.00 6.13
5811 6713 0.753479 TGTTTCTCTTTTGCCGGGCA 60.753 50.000 19.77 19.77 36.47 5.36
5812 6714 0.039165 GTTTCTCTTTTGCCGGGCAG 60.039 55.000 22.59 11.18 40.61 4.85
5813 6715 0.179004 TTTCTCTTTTGCCGGGCAGA 60.179 50.000 22.59 15.76 40.61 4.26
5814 6716 0.606401 TTCTCTTTTGCCGGGCAGAG 60.606 55.000 23.67 23.67 40.61 3.35
5815 6717 2.672996 TCTTTTGCCGGGCAGAGC 60.673 61.111 22.59 0.00 40.61 4.09
5816 6718 4.107051 CTTTTGCCGGGCAGAGCG 62.107 66.667 22.59 8.99 40.61 5.03
5833 6735 1.281899 GCGCTTAGCTCAAGTGTAGG 58.718 55.000 0.00 0.00 45.01 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 0.232303 GACGCAAAACCGTGACTCTG 59.768 55.000 0.00 0.00 42.24 3.35
23 24 3.236816 CACAATGATGCTTTTCACGGAC 58.763 45.455 0.00 0.00 0.00 4.79
38 39 2.802247 TGACTCTCGTGAAAGCACAATG 59.198 45.455 0.00 0.00 45.41 2.82
39 40 2.802816 GTGACTCTCGTGAAAGCACAAT 59.197 45.455 0.00 0.00 45.41 2.71
50 51 1.299926 GCACAACCGTGACTCTCGT 60.300 57.895 0.00 0.00 46.80 4.18
63 64 2.038863 TCCCTTTCCTAGAGGCACAA 57.961 50.000 0.00 0.00 32.74 3.33
64 65 2.038863 TTCCCTTTCCTAGAGGCACA 57.961 50.000 0.00 0.00 32.74 4.57
113 118 4.458708 GAAAGCAAAATCGTGACTCTCAC 58.541 43.478 0.00 0.00 43.65 3.51
114 119 3.184379 CGAAAGCAAAATCGTGACTCTCA 59.816 43.478 0.00 0.00 34.48 3.27
138 143 1.537202 GAAAGCACAATCGTGGCTCTT 59.463 47.619 0.00 0.00 43.81 2.85
143 148 0.865111 TCGTGAAAGCACAATCGTGG 59.135 50.000 0.00 0.00 45.41 4.94
148 153 2.802816 GTGACTCTCGTGAAAGCACAAT 59.197 45.455 0.00 0.00 45.41 2.71
223 229 0.935196 AACAAAACCGTGACTCTCGC 59.065 50.000 0.00 0.00 0.00 5.03
246 255 3.414700 CACAACCGTGCCTCTCGC 61.415 66.667 0.00 0.00 36.06 5.03
269 278 2.181021 CACGCCCGTACCTCTCAC 59.819 66.667 0.00 0.00 0.00 3.51
270 279 3.755628 GCACGCCCGTACCTCTCA 61.756 66.667 0.00 0.00 0.00 3.27
271 280 4.509737 GGCACGCCCGTACCTCTC 62.510 72.222 2.91 0.00 0.00 3.20
277 286 2.263540 GAAAGAGGCACGCCCGTA 59.736 61.111 3.95 0.00 39.21 4.02
309 318 0.178975 AAACCAAACCGGGAGCATGA 60.179 50.000 6.32 0.00 40.22 3.07
310 319 0.678950 AAAACCAAACCGGGAGCATG 59.321 50.000 6.32 0.00 40.22 4.06
346 359 6.031751 TGCCAATGTTGATAGGTTTTTACC 57.968 37.500 0.00 0.00 0.00 2.85
349 367 6.610075 AGATGCCAATGTTGATAGGTTTTT 57.390 33.333 0.00 0.00 0.00 1.94
364 389 5.582269 CGAGATCTTCAAAACTAGATGCCAA 59.418 40.000 0.00 0.00 0.00 4.52
368 393 5.052040 GCGTCGAGATCTTCAAAACTAGATG 60.052 44.000 0.00 0.00 0.00 2.90
405 430 6.146021 GCGTCCAAATCTCAAACATTTTCAAT 59.854 34.615 0.00 0.00 0.00 2.57
406 431 5.461737 GCGTCCAAATCTCAAACATTTTCAA 59.538 36.000 0.00 0.00 0.00 2.69
412 438 2.095768 CGTGCGTCCAAATCTCAAACAT 60.096 45.455 0.00 0.00 0.00 2.71
413 439 1.262950 CGTGCGTCCAAATCTCAAACA 59.737 47.619 0.00 0.00 0.00 2.83
417 443 0.250124 AACCGTGCGTCCAAATCTCA 60.250 50.000 0.00 0.00 0.00 3.27
500 526 9.820229 CACTAATTAAGAAGTATTTGTCGCAAA 57.180 29.630 7.32 7.32 0.00 3.68
501 527 9.210329 TCACTAATTAAGAAGTATTTGTCGCAA 57.790 29.630 0.00 0.00 0.00 4.85
502 528 8.766000 TCACTAATTAAGAAGTATTTGTCGCA 57.234 30.769 0.00 0.00 0.00 5.10
520 546 9.581099 ACTTTGTTTTTGAACGAAATCACTAAT 57.419 25.926 0.00 0.00 0.00 1.73
521 547 8.855279 CACTTTGTTTTTGAACGAAATCACTAA 58.145 29.630 0.00 0.00 0.00 2.24
522 548 7.486551 CCACTTTGTTTTTGAACGAAATCACTA 59.513 33.333 0.00 0.00 0.00 2.74
523 549 6.310224 CCACTTTGTTTTTGAACGAAATCACT 59.690 34.615 0.00 0.00 0.00 3.41
524 550 6.465978 CCACTTTGTTTTTGAACGAAATCAC 58.534 36.000 0.00 0.00 0.00 3.06
525 551 5.062809 GCCACTTTGTTTTTGAACGAAATCA 59.937 36.000 0.00 0.00 0.00 2.57
526 552 5.062809 TGCCACTTTGTTTTTGAACGAAATC 59.937 36.000 0.00 0.00 0.00 2.17
527 553 4.932200 TGCCACTTTGTTTTTGAACGAAAT 59.068 33.333 0.00 0.00 0.00 2.17
528 554 4.150804 GTGCCACTTTGTTTTTGAACGAAA 59.849 37.500 0.00 0.00 0.00 3.46
529 555 3.675698 GTGCCACTTTGTTTTTGAACGAA 59.324 39.130 0.00 0.00 0.00 3.85
530 556 3.246619 GTGCCACTTTGTTTTTGAACGA 58.753 40.909 0.00 0.00 0.00 3.85
531 557 2.027451 CGTGCCACTTTGTTTTTGAACG 59.973 45.455 0.00 0.00 0.00 3.95
532 558 2.990514 ACGTGCCACTTTGTTTTTGAAC 59.009 40.909 0.00 0.00 0.00 3.18
533 559 3.305398 ACGTGCCACTTTGTTTTTGAA 57.695 38.095 0.00 0.00 0.00 2.69
534 560 2.989840 CAACGTGCCACTTTGTTTTTGA 59.010 40.909 5.94 0.00 0.00 2.69
535 561 2.734079 ACAACGTGCCACTTTGTTTTTG 59.266 40.909 13.33 0.00 37.29 2.44
536 562 3.033368 ACAACGTGCCACTTTGTTTTT 57.967 38.095 13.33 0.00 37.29 1.94
537 563 2.734276 ACAACGTGCCACTTTGTTTT 57.266 40.000 13.33 0.00 37.29 2.43
538 564 2.734276 AACAACGTGCCACTTTGTTT 57.266 40.000 22.29 10.17 44.65 2.83
540 566 2.734276 AAAACAACGTGCCACTTTGT 57.266 40.000 13.33 13.33 41.48 2.83
558 584 2.823154 CTCCATAAGGCGAACCCAAAAA 59.177 45.455 0.00 0.00 36.11 1.94
559 585 2.224917 ACTCCATAAGGCGAACCCAAAA 60.225 45.455 0.00 0.00 36.11 2.44
560 586 1.353022 ACTCCATAAGGCGAACCCAAA 59.647 47.619 0.00 0.00 36.11 3.28
561 587 0.988832 ACTCCATAAGGCGAACCCAA 59.011 50.000 0.00 0.00 36.11 4.12
562 588 0.988832 AACTCCATAAGGCGAACCCA 59.011 50.000 0.00 0.00 36.11 4.51
563 589 2.994186 TAACTCCATAAGGCGAACCC 57.006 50.000 0.00 0.00 36.11 4.11
564 590 3.139077 CCATAACTCCATAAGGCGAACC 58.861 50.000 0.00 0.00 33.74 3.62
565 591 3.139077 CCCATAACTCCATAAGGCGAAC 58.861 50.000 0.00 0.00 33.74 3.95
566 592 2.486548 GCCCATAACTCCATAAGGCGAA 60.487 50.000 0.00 0.00 33.74 4.70
567 593 1.071699 GCCCATAACTCCATAAGGCGA 59.928 52.381 0.00 0.00 33.74 5.54
568 594 1.523758 GCCCATAACTCCATAAGGCG 58.476 55.000 0.00 0.00 33.74 5.52
569 595 1.144913 TGGCCCATAACTCCATAAGGC 59.855 52.381 0.00 0.00 38.21 4.35
570 596 2.224867 CCTGGCCCATAACTCCATAAGG 60.225 54.545 0.00 0.00 0.00 2.69
571 597 2.815589 GCCTGGCCCATAACTCCATAAG 60.816 54.545 7.66 0.00 0.00 1.73
572 598 1.144913 GCCTGGCCCATAACTCCATAA 59.855 52.381 7.66 0.00 0.00 1.90
573 599 0.771127 GCCTGGCCCATAACTCCATA 59.229 55.000 7.66 0.00 0.00 2.74
574 600 1.538666 GCCTGGCCCATAACTCCAT 59.461 57.895 7.66 0.00 0.00 3.41
575 601 2.689691 GGCCTGGCCCATAACTCCA 61.690 63.158 27.77 0.00 44.06 3.86
576 602 2.195956 GGCCTGGCCCATAACTCC 59.804 66.667 27.77 0.00 44.06 3.85
808 848 4.544689 CGCGAGAGGAGTGAGGCG 62.545 72.222 0.00 0.00 37.56 5.52
877 917 4.899239 GCTGGTCGCTGGGATCGG 62.899 72.222 9.29 9.29 35.07 4.18
907 947 3.069318 GCCCGTCCTCGTCCTCTT 61.069 66.667 0.00 0.00 35.01 2.85
1120 1161 2.001838 GAGGGGAAGGGAGGGGAAC 61.002 68.421 0.00 0.00 0.00 3.62
1122 1163 3.707189 GGAGGGGAAGGGAGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
1133 1180 2.507769 GCGAAACGTACGGAGGGG 60.508 66.667 21.06 5.76 0.00 4.79
1139 1186 2.472934 GCCAAGGCGAAACGTACG 59.527 61.111 15.01 15.01 0.00 3.67
1173 1550 2.517450 GCGGAAATGGAGACGAGCG 61.517 63.158 0.00 0.00 0.00 5.03
1251 1632 7.006509 TCCAGAGACATACAGACATATGATCA 58.993 38.462 10.38 0.00 36.27 2.92
1254 1635 6.368805 AGTCCAGAGACATACAGACATATGA 58.631 40.000 10.38 0.00 46.15 2.15
1255 1636 6.647334 AGTCCAGAGACATACAGACATATG 57.353 41.667 0.00 0.00 46.15 1.78
1298 1679 3.608316 GCAAAAGGATGCCATAAACCA 57.392 42.857 0.00 0.00 40.49 3.67
1324 1705 1.263484 CAGCCATCTCAATTAGCAGCG 59.737 52.381 0.00 0.00 0.00 5.18
1367 1748 7.651808 CGGCCTTAAAACATTCAGATATCAAT 58.348 34.615 5.32 0.00 0.00 2.57
1391 1773 6.346598 CCACAGTTTATATTTGACCGATAGCG 60.347 42.308 0.00 0.00 37.24 4.26
1601 1985 8.608185 ACCAAACATCATATCACCCTAAATTT 57.392 30.769 0.00 0.00 0.00 1.82
1767 2152 1.203001 TGAAACCATCCACTCCCCAAC 60.203 52.381 0.00 0.00 0.00 3.77
1839 2252 6.001460 TCACAAAACTACCATAGAAACAGGG 58.999 40.000 0.00 0.00 0.00 4.45
1880 2293 8.184192 CCCTAAACAAGTTATCATGAATGTCAC 58.816 37.037 0.00 0.00 0.00 3.67
1906 2320 1.668628 CCGTTGTAGTTGCCAATTGCC 60.669 52.381 0.00 0.00 40.16 4.52
2034 2458 1.481242 GGGGCCATTAGGGATTTCAGG 60.481 57.143 4.39 0.00 40.01 3.86
2042 2466 1.994885 ATGTGTCGGGGCCATTAGGG 61.995 60.000 4.39 0.00 40.85 3.53
2099 2523 6.016192 CCATTGAATCATTGCTAGAGCTTGAT 60.016 38.462 12.10 12.10 42.23 2.57
2120 2544 3.327172 CCTGCTCAGGTATGATCTCCATT 59.673 47.826 7.75 0.00 43.61 3.16
2345 2769 1.134068 GCAGACCCCCTTGATACCTTC 60.134 57.143 0.00 0.00 0.00 3.46
2356 2780 2.149973 ATGATTTGAAGCAGACCCCC 57.850 50.000 0.00 0.00 0.00 5.40
2402 2826 6.798482 TCGCATCATTTCTGATAAAAGCATT 58.202 32.000 0.00 0.00 40.20 3.56
2532 2957 7.002276 AGACATCAGATAATCAATTGCATCCA 58.998 34.615 0.00 0.00 0.00 3.41
2533 2958 7.450124 AGACATCAGATAATCAATTGCATCC 57.550 36.000 0.00 0.00 0.00 3.51
2745 3171 1.609208 AACTTGCCAGTGCTACTTGG 58.391 50.000 0.00 0.00 38.71 3.61
2827 3253 2.959516 TGAAGTCATTAGCACGTCCTG 58.040 47.619 0.00 0.00 0.00 3.86
2930 3356 2.276732 AGAACATGGTGGAAGGTGTG 57.723 50.000 0.00 0.00 0.00 3.82
2931 3357 4.382685 CGTATAGAACATGGTGGAAGGTGT 60.383 45.833 0.00 0.00 0.00 4.16
2962 3388 2.908688 TACGCCACTGCATGTATGAT 57.091 45.000 0.00 0.00 37.32 2.45
3010 3675 3.139077 GCAAATATCTGACGTTAGGGGG 58.861 50.000 7.57 0.00 0.00 5.40
3011 3676 4.073293 AGCAAATATCTGACGTTAGGGG 57.927 45.455 7.57 0.00 0.00 4.79
3012 3677 5.844004 AGTAGCAAATATCTGACGTTAGGG 58.156 41.667 7.57 0.00 0.00 3.53
3013 3678 7.491372 TCAAAGTAGCAAATATCTGACGTTAGG 59.509 37.037 7.57 0.00 0.00 2.69
3014 3679 8.407457 TCAAAGTAGCAAATATCTGACGTTAG 57.593 34.615 0.00 0.00 0.00 2.34
3015 3680 8.817100 CATCAAAGTAGCAAATATCTGACGTTA 58.183 33.333 0.00 0.00 0.00 3.18
3016 3681 7.549134 TCATCAAAGTAGCAAATATCTGACGTT 59.451 33.333 0.00 0.00 0.00 3.99
3017 3682 7.041721 TCATCAAAGTAGCAAATATCTGACGT 58.958 34.615 0.00 0.00 0.00 4.34
3018 3683 7.468922 TCATCAAAGTAGCAAATATCTGACG 57.531 36.000 0.00 0.00 0.00 4.35
3083 3748 2.381961 AGGGCCAAACAGGAGGAAAATA 59.618 45.455 6.18 0.00 41.22 1.40
3188 3853 8.855110 ACAACAATGTAATATCACCAAAGTCAA 58.145 29.630 0.00 0.00 38.24 3.18
3274 3939 5.238432 TCACGACTGCATGATGTTTAGTTTT 59.762 36.000 0.00 0.00 0.00 2.43
3401 4091 6.459573 GCTCACAAACAAATTGGAACTAGACA 60.460 38.462 0.00 0.00 43.66 3.41
3403 4093 5.592282 TGCTCACAAACAAATTGGAACTAGA 59.408 36.000 0.00 0.00 43.66 2.43
3428 4118 7.603024 AGCAACTTAACTTACTGACCTCAATAC 59.397 37.037 0.00 0.00 0.00 1.89
3508 4198 7.068716 AGAGTGGAATTGTTTGCTTAGAAAGTT 59.931 33.333 0.00 0.00 0.00 2.66
3513 4203 6.959639 AAAGAGTGGAATTGTTTGCTTAGA 57.040 33.333 0.00 0.00 0.00 2.10
3514 4204 6.980397 ACAAAAGAGTGGAATTGTTTGCTTAG 59.020 34.615 0.00 0.00 32.37 2.18
3529 4219 6.630443 CGAAATCAAACAGAGACAAAAGAGTG 59.370 38.462 0.00 0.00 0.00 3.51
3540 4230 5.926542 TGTCTAAGGACGAAATCAAACAGAG 59.073 40.000 0.00 0.00 44.83 3.35
3543 4233 5.465390 CAGTGTCTAAGGACGAAATCAAACA 59.535 40.000 0.00 0.00 44.83 2.83
3694 4385 4.393371 GGAGATGGAAGTGAGCAACTAAAC 59.607 45.833 0.00 0.00 38.56 2.01
3787 4478 2.657484 CTTTGCATGATCGGCCGCAG 62.657 60.000 23.51 9.04 35.47 5.18
3823 4514 8.415950 AAACACCATAAGAATATGTGTGGAAA 57.584 30.769 15.43 0.00 40.83 3.13
4023 4714 5.712152 AAGGTGGAAACTAATGCAGAAAG 57.288 39.130 0.00 0.00 0.00 2.62
4479 5205 7.171630 TGCAAAGAAGGGTGTAAAAAGTAAA 57.828 32.000 0.00 0.00 0.00 2.01
4480 5206 6.777213 TGCAAAGAAGGGTGTAAAAAGTAA 57.223 33.333 0.00 0.00 0.00 2.24
4481 5207 6.777213 TTGCAAAGAAGGGTGTAAAAAGTA 57.223 33.333 0.00 0.00 0.00 2.24
4482 5208 5.669164 TTGCAAAGAAGGGTGTAAAAAGT 57.331 34.783 0.00 0.00 0.00 2.66
4735 5463 3.659092 CAGCTGCGCCGGAAAACA 61.659 61.111 5.05 0.00 0.00 2.83
4750 5478 1.926511 GCATTGACGAAGCCCCACAG 61.927 60.000 0.00 0.00 0.00 3.66
4806 5534 5.745312 AATTCCAAATTCCAGGTTTCTCC 57.255 39.130 0.00 0.00 0.00 3.71
4978 5707 5.359194 TCTTGTTTCACCTCCATAGATCC 57.641 43.478 0.00 0.00 0.00 3.36
4985 5714 0.884704 GCGCTCTTGTTTCACCTCCA 60.885 55.000 0.00 0.00 0.00 3.86
5031 5821 9.726438 AAATGCTTAGAATTCAAGTACACTACT 57.274 29.630 8.44 0.00 41.73 2.57
5078 5868 1.507140 AGATAAGCGGAACATGGGGA 58.493 50.000 0.00 0.00 0.00 4.81
5118 5908 3.007831 TCTCATATGATATTGGCACGGCA 59.992 43.478 5.72 0.00 0.00 5.69
5151 5941 3.777106 TGTTCTCAGAAGGATTGCACT 57.223 42.857 0.00 0.00 0.00 4.40
5217 6114 0.550914 TCAAGCAAACAGGTGGAGGT 59.449 50.000 0.00 0.00 0.00 3.85
5218 6115 1.242076 CTCAAGCAAACAGGTGGAGG 58.758 55.000 0.00 0.00 41.24 4.30
5219 6116 1.202806 TCCTCAAGCAAACAGGTGGAG 60.203 52.381 0.00 0.00 43.95 3.86
5220 6117 0.843309 TCCTCAAGCAAACAGGTGGA 59.157 50.000 0.00 0.00 0.00 4.02
5221 6118 1.691196 TTCCTCAAGCAAACAGGTGG 58.309 50.000 0.00 0.00 0.00 4.61
5222 6119 2.035066 CCTTTCCTCAAGCAAACAGGTG 59.965 50.000 0.00 0.00 0.00 4.00
5223 6120 2.091885 TCCTTTCCTCAAGCAAACAGGT 60.092 45.455 0.00 0.00 0.00 4.00
5224 6121 2.586425 TCCTTTCCTCAAGCAAACAGG 58.414 47.619 0.00 0.00 0.00 4.00
5225 6122 3.005155 CCTTCCTTTCCTCAAGCAAACAG 59.995 47.826 0.00 0.00 0.00 3.16
5226 6123 2.958355 CCTTCCTTTCCTCAAGCAAACA 59.042 45.455 0.00 0.00 0.00 2.83
5227 6124 3.222603 TCCTTCCTTTCCTCAAGCAAAC 58.777 45.455 0.00 0.00 0.00 2.93
5228 6125 3.490348 CTCCTTCCTTTCCTCAAGCAAA 58.510 45.455 0.00 0.00 0.00 3.68
5229 6126 2.224867 CCTCCTTCCTTTCCTCAAGCAA 60.225 50.000 0.00 0.00 0.00 3.91
5230 6127 1.352352 CCTCCTTCCTTTCCTCAAGCA 59.648 52.381 0.00 0.00 0.00 3.91
5252 6149 6.980978 TGTCGATTTTCTAGATGTCATCTTCC 59.019 38.462 20.27 1.10 40.76 3.46
5253 6150 7.993821 TGTCGATTTTCTAGATGTCATCTTC 57.006 36.000 20.27 9.77 40.76 2.87
5254 6151 8.954950 ATTGTCGATTTTCTAGATGTCATCTT 57.045 30.769 20.27 1.34 40.76 2.40
5278 6175 0.409092 TCCTGTTGGGCCACATCAAT 59.591 50.000 5.23 0.00 34.39 2.57
5286 6183 2.356667 CCTCCTTCCTGTTGGGCC 59.643 66.667 0.00 0.00 34.39 5.80
5290 6187 1.211457 CCATCTCCCTCCTTCCTGTTG 59.789 57.143 0.00 0.00 0.00 3.33
5291 6188 1.589414 CCATCTCCCTCCTTCCTGTT 58.411 55.000 0.00 0.00 0.00 3.16
5347 6248 3.640000 CAATCTTAGGCGGCGGCG 61.640 66.667 28.70 28.70 41.24 6.46
5348 6249 3.953887 GCAATCTTAGGCGGCGGC 61.954 66.667 27.24 27.24 38.90 6.53
5349 6250 3.279875 GGCAATCTTAGGCGGCGG 61.280 66.667 9.78 0.00 0.00 6.13
5351 6252 0.101219 CAAAGGCAATCTTAGGCGGC 59.899 55.000 0.00 0.00 34.78 6.53
5421 6323 1.893919 GAAGCAAGGCGAGGTCCTCT 61.894 60.000 17.00 0.00 34.82 3.69
5431 6333 1.238439 TACAAGCACTGAAGCAAGGC 58.762 50.000 0.00 0.00 36.85 4.35
5435 6337 3.371898 CGATGAATACAAGCACTGAAGCA 59.628 43.478 0.00 0.00 36.85 3.91
5439 6341 3.251479 AGCGATGAATACAAGCACTGA 57.749 42.857 0.00 0.00 36.63 3.41
5516 6418 0.740868 GCTTGCCGTGTGCTCTCATA 60.741 55.000 0.00 0.00 42.00 2.15
5528 6430 1.148157 CGACCAGTATCAGCTTGCCG 61.148 60.000 0.00 0.00 0.00 5.69
5547 6449 3.753842 TGCGAGACACAGTTTTGAAAAC 58.246 40.909 12.62 12.62 0.00 2.43
5558 6460 2.254546 AAACAAGGATGCGAGACACA 57.745 45.000 0.00 0.00 0.00 3.72
5561 6463 2.290641 ACACAAAACAAGGATGCGAGAC 59.709 45.455 0.00 0.00 0.00 3.36
5564 6466 2.020720 ACACACAAAACAAGGATGCGA 58.979 42.857 0.00 0.00 0.00 5.10
5565 6467 2.490328 ACACACAAAACAAGGATGCG 57.510 45.000 0.00 0.00 0.00 4.73
5612 6514 4.014569 TCAACAATTCTTCCGATGGTCA 57.985 40.909 0.00 0.00 0.00 4.02
5628 6530 5.560722 TCTACTGATGGTCCTTTTCAACA 57.439 39.130 0.00 0.00 0.00 3.33
5629 6531 8.041323 TCTATTCTACTGATGGTCCTTTTCAAC 58.959 37.037 0.00 0.00 0.00 3.18
5630 6532 8.146053 TCTATTCTACTGATGGTCCTTTTCAA 57.854 34.615 0.00 0.00 0.00 2.69
5631 6533 7.400339 ACTCTATTCTACTGATGGTCCTTTTCA 59.600 37.037 0.00 0.00 0.00 2.69
5632 6534 7.787028 ACTCTATTCTACTGATGGTCCTTTTC 58.213 38.462 0.00 0.00 0.00 2.29
5633 6535 7.741554 ACTCTATTCTACTGATGGTCCTTTT 57.258 36.000 0.00 0.00 0.00 2.27
5634 6536 7.560368 CAACTCTATTCTACTGATGGTCCTTT 58.440 38.462 0.00 0.00 0.00 3.11
5635 6537 6.407525 GCAACTCTATTCTACTGATGGTCCTT 60.408 42.308 0.00 0.00 0.00 3.36
5636 6538 5.069781 GCAACTCTATTCTACTGATGGTCCT 59.930 44.000 0.00 0.00 0.00 3.85
5637 6539 5.069781 AGCAACTCTATTCTACTGATGGTCC 59.930 44.000 0.00 0.00 0.00 4.46
5638 6540 6.155475 AGCAACTCTATTCTACTGATGGTC 57.845 41.667 0.00 0.00 0.00 4.02
5639 6541 6.344500 CAAGCAACTCTATTCTACTGATGGT 58.656 40.000 0.00 0.00 0.00 3.55
5640 6542 5.757320 CCAAGCAACTCTATTCTACTGATGG 59.243 44.000 0.00 0.00 0.00 3.51
5641 6543 6.344500 ACCAAGCAACTCTATTCTACTGATG 58.656 40.000 0.00 0.00 0.00 3.07
5642 6544 6.552445 ACCAAGCAACTCTATTCTACTGAT 57.448 37.500 0.00 0.00 0.00 2.90
5643 6545 7.476540 TTACCAAGCAACTCTATTCTACTGA 57.523 36.000 0.00 0.00 0.00 3.41
5644 6546 8.723942 AATTACCAAGCAACTCTATTCTACTG 57.276 34.615 0.00 0.00 0.00 2.74
5645 6547 9.740710 AAAATTACCAAGCAACTCTATTCTACT 57.259 29.630 0.00 0.00 0.00 2.57
5658 6560 9.921637 CCAAAGTTCTATAAAAATTACCAAGCA 57.078 29.630 0.00 0.00 0.00 3.91
5659 6561 9.366216 CCCAAAGTTCTATAAAAATTACCAAGC 57.634 33.333 0.00 0.00 0.00 4.01
5662 6564 9.589461 TCACCCAAAGTTCTATAAAAATTACCA 57.411 29.630 0.00 0.00 0.00 3.25
5670 6572 9.753674 AGATTGAATCACCCAAAGTTCTATAAA 57.246 29.630 8.03 0.00 0.00 1.40
5671 6573 9.396022 GAGATTGAATCACCCAAAGTTCTATAA 57.604 33.333 8.03 0.00 0.00 0.98
5672 6574 8.772250 AGAGATTGAATCACCCAAAGTTCTATA 58.228 33.333 8.03 0.00 0.00 1.31
5673 6575 7.637511 AGAGATTGAATCACCCAAAGTTCTAT 58.362 34.615 8.03 0.00 0.00 1.98
5674 6576 7.020827 AGAGATTGAATCACCCAAAGTTCTA 57.979 36.000 8.03 0.00 0.00 2.10
5675 6577 5.885465 AGAGATTGAATCACCCAAAGTTCT 58.115 37.500 8.03 0.00 0.00 3.01
5676 6578 6.881602 AGTAGAGATTGAATCACCCAAAGTTC 59.118 38.462 8.03 0.00 0.00 3.01
5677 6579 6.784031 AGTAGAGATTGAATCACCCAAAGTT 58.216 36.000 8.03 0.00 0.00 2.66
5678 6580 6.380079 AGTAGAGATTGAATCACCCAAAGT 57.620 37.500 8.03 0.00 0.00 2.66
5679 6581 7.560368 AGTAGTAGAGATTGAATCACCCAAAG 58.440 38.462 8.03 0.00 0.00 2.77
5680 6582 7.496346 AGTAGTAGAGATTGAATCACCCAAA 57.504 36.000 8.03 0.00 0.00 3.28
5681 6583 7.496346 AAGTAGTAGAGATTGAATCACCCAA 57.504 36.000 8.03 0.00 0.00 4.12
5682 6584 7.038302 ACAAAGTAGTAGAGATTGAATCACCCA 60.038 37.037 8.03 0.00 0.00 4.51
5683 6585 7.331791 ACAAAGTAGTAGAGATTGAATCACCC 58.668 38.462 8.03 0.00 0.00 4.61
5684 6586 7.492994 GGACAAAGTAGTAGAGATTGAATCACC 59.507 40.741 8.03 0.00 0.00 4.02
5685 6587 7.221067 CGGACAAAGTAGTAGAGATTGAATCAC 59.779 40.741 8.03 0.83 0.00 3.06
5686 6588 7.122204 TCGGACAAAGTAGTAGAGATTGAATCA 59.878 37.037 8.03 0.00 0.00 2.57
5687 6589 7.481642 TCGGACAAAGTAGTAGAGATTGAATC 58.518 38.462 0.00 0.00 0.00 2.52
5688 6590 7.406031 TCGGACAAAGTAGTAGAGATTGAAT 57.594 36.000 0.00 0.00 0.00 2.57
5689 6591 6.829229 TCGGACAAAGTAGTAGAGATTGAA 57.171 37.500 0.00 0.00 0.00 2.69
5690 6592 7.122204 TGAATCGGACAAAGTAGTAGAGATTGA 59.878 37.037 0.00 0.00 0.00 2.57
5691 6593 7.258441 TGAATCGGACAAAGTAGTAGAGATTG 58.742 38.462 0.00 0.00 0.00 2.67
5692 6594 7.406031 TGAATCGGACAAAGTAGTAGAGATT 57.594 36.000 0.00 0.00 0.00 2.40
5693 6595 7.589958 ATGAATCGGACAAAGTAGTAGAGAT 57.410 36.000 0.00 0.00 0.00 2.75
5694 6596 8.693120 ATATGAATCGGACAAAGTAGTAGAGA 57.307 34.615 0.00 0.00 0.00 3.10
5702 6604 9.173021 TGACAATTAATATGAATCGGACAAAGT 57.827 29.630 0.00 0.00 0.00 2.66
5703 6605 9.438291 GTGACAATTAATATGAATCGGACAAAG 57.562 33.333 0.00 0.00 0.00 2.77
5704 6606 8.402472 GGTGACAATTAATATGAATCGGACAAA 58.598 33.333 0.00 0.00 0.00 2.83
5705 6607 7.554476 TGGTGACAATTAATATGAATCGGACAA 59.446 33.333 0.00 0.00 37.44 3.18
5706 6608 7.051000 TGGTGACAATTAATATGAATCGGACA 58.949 34.615 0.00 0.00 37.44 4.02
5707 6609 7.490962 TGGTGACAATTAATATGAATCGGAC 57.509 36.000 0.00 0.00 37.44 4.79
5727 6629 9.669353 GCTGATTTAATATGTACTGAATTGGTG 57.331 33.333 0.00 0.00 0.00 4.17
5728 6630 9.407380 TGCTGATTTAATATGTACTGAATTGGT 57.593 29.630 0.00 0.00 0.00 3.67
5746 6648 8.849168 TCGATCCATATTAATTGTTGCTGATTT 58.151 29.630 0.00 0.00 0.00 2.17
5747 6649 8.394971 TCGATCCATATTAATTGTTGCTGATT 57.605 30.769 0.00 0.00 0.00 2.57
5748 6650 7.984422 TCGATCCATATTAATTGTTGCTGAT 57.016 32.000 0.00 0.00 0.00 2.90
5749 6651 7.520453 GCTTCGATCCATATTAATTGTTGCTGA 60.520 37.037 0.00 0.00 0.00 4.26
5750 6652 6.580041 GCTTCGATCCATATTAATTGTTGCTG 59.420 38.462 0.00 0.00 0.00 4.41
5751 6653 6.566564 CGCTTCGATCCATATTAATTGTTGCT 60.567 38.462 0.00 0.00 0.00 3.91
5752 6654 5.565259 CGCTTCGATCCATATTAATTGTTGC 59.435 40.000 0.00 0.00 0.00 4.17
5753 6655 6.887368 TCGCTTCGATCCATATTAATTGTTG 58.113 36.000 0.00 0.00 0.00 3.33
5754 6656 6.706270 ACTCGCTTCGATCCATATTAATTGTT 59.294 34.615 0.00 0.00 34.61 2.83
5755 6657 6.223852 ACTCGCTTCGATCCATATTAATTGT 58.776 36.000 0.00 0.00 34.61 2.71
5756 6658 6.712241 ACTCGCTTCGATCCATATTAATTG 57.288 37.500 0.00 0.00 34.61 2.32
5757 6659 7.827701 TCTACTCGCTTCGATCCATATTAATT 58.172 34.615 0.00 0.00 34.61 1.40
5758 6660 7.392494 TCTACTCGCTTCGATCCATATTAAT 57.608 36.000 0.00 0.00 34.61 1.40
5759 6661 6.812879 TCTACTCGCTTCGATCCATATTAA 57.187 37.500 0.00 0.00 34.61 1.40
5760 6662 6.812879 TTCTACTCGCTTCGATCCATATTA 57.187 37.500 0.00 0.00 34.61 0.98
5761 6663 5.707242 TTCTACTCGCTTCGATCCATATT 57.293 39.130 0.00 0.00 34.61 1.28
5762 6664 5.707242 TTTCTACTCGCTTCGATCCATAT 57.293 39.130 0.00 0.00 34.61 1.78
5763 6665 5.509716 TTTTCTACTCGCTTCGATCCATA 57.490 39.130 0.00 0.00 34.61 2.74
5764 6666 4.386867 TTTTCTACTCGCTTCGATCCAT 57.613 40.909 0.00 0.00 34.61 3.41
5765 6667 3.861276 TTTTCTACTCGCTTCGATCCA 57.139 42.857 0.00 0.00 34.61 3.41
5783 6685 6.033966 CGGCAAAAGAGAAACACTACTTTTT 58.966 36.000 0.00 0.00 39.48 1.94
5784 6686 5.449999 CCGGCAAAAGAGAAACACTACTTTT 60.450 40.000 0.00 0.00 41.26 2.27
5785 6687 4.036380 CCGGCAAAAGAGAAACACTACTTT 59.964 41.667 0.00 0.00 34.67 2.66
5786 6688 3.564225 CCGGCAAAAGAGAAACACTACTT 59.436 43.478 0.00 0.00 0.00 2.24
5787 6689 3.139077 CCGGCAAAAGAGAAACACTACT 58.861 45.455 0.00 0.00 0.00 2.57
5788 6690 2.225727 CCCGGCAAAAGAGAAACACTAC 59.774 50.000 0.00 0.00 0.00 2.73
5789 6691 2.500229 CCCGGCAAAAGAGAAACACTA 58.500 47.619 0.00 0.00 0.00 2.74
5790 6692 1.318576 CCCGGCAAAAGAGAAACACT 58.681 50.000 0.00 0.00 0.00 3.55
5791 6693 0.318699 GCCCGGCAAAAGAGAAACAC 60.319 55.000 3.91 0.00 0.00 3.32
5792 6694 0.753479 TGCCCGGCAAAAGAGAAACA 60.753 50.000 10.50 0.00 34.76 2.83
5793 6695 0.039165 CTGCCCGGCAAAAGAGAAAC 60.039 55.000 14.45 0.00 38.41 2.78
5794 6696 0.179004 TCTGCCCGGCAAAAGAGAAA 60.179 50.000 14.45 0.00 38.41 2.52
5795 6697 0.606401 CTCTGCCCGGCAAAAGAGAA 60.606 55.000 18.20 0.00 38.41 2.87
5796 6698 1.003355 CTCTGCCCGGCAAAAGAGA 60.003 57.895 18.20 9.22 38.41 3.10
5797 6699 2.694760 GCTCTGCCCGGCAAAAGAG 61.695 63.158 20.66 19.61 38.41 2.85
5798 6700 2.672996 GCTCTGCCCGGCAAAAGA 60.673 61.111 20.66 11.53 38.41 2.52
5799 6701 4.107051 CGCTCTGCCCGGCAAAAG 62.107 66.667 14.45 14.50 38.41 2.27
5814 6716 1.281899 CCTACACTTGAGCTAAGCGC 58.718 55.000 0.00 0.00 40.16 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.