Multiple sequence alignment - TraesCS7A01G178600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G178600 chr7A 100.000 3635 0 0 1 3635 133044966 133048600 0.000000e+00 6713.0
1 TraesCS7A01G178600 chr7A 97.041 169 5 0 3105 3273 216430167 216429999 5.940000e-73 285.0
2 TraesCS7A01G178600 chr7A 79.939 329 50 8 3290 3618 510144428 510144116 1.020000e-55 228.0
3 TraesCS7A01G178600 chr7A 84.000 125 18 2 1027 1150 441978663 441978786 6.380000e-23 119.0
4 TraesCS7A01G178600 chr7A 81.102 127 18 5 2231 2354 506155140 506155017 2.990000e-16 97.1
5 TraesCS7A01G178600 chr7A 82.857 105 16 2 2229 2332 681789398 681789501 3.860000e-15 93.5
6 TraesCS7A01G178600 chr7B 91.734 2831 112 35 15 2799 95916431 95919185 0.000000e+00 3819.0
7 TraesCS7A01G178600 chr7B 81.102 127 18 5 2231 2354 444292484 444292607 2.990000e-16 97.1
8 TraesCS7A01G178600 chr7D 94.603 2038 94 12 937 2967 134101437 134103465 0.000000e+00 3140.0
9 TraesCS7A01G178600 chr7D 89.440 947 40 19 1 942 134100518 134101409 0.000000e+00 1140.0
10 TraesCS7A01G178600 chr7D 85.399 363 43 8 3274 3635 134103936 134104289 5.730000e-98 368.0
11 TraesCS7A01G178600 chr7D 87.037 162 21 0 2897 3058 134103496 134103657 2.230000e-42 183.0
12 TraesCS7A01G178600 chr5D 93.720 414 25 1 2094 2507 126372581 126372169 1.430000e-173 619.0
13 TraesCS7A01G178600 chr5D 73.077 442 97 19 1964 2391 416258232 416257799 1.760000e-28 137.0
14 TraesCS7A01G178600 chr5D 75.566 221 47 6 1027 1242 50678961 50678743 6.420000e-18 102.0
15 TraesCS7A01G178600 chr4A 98.235 170 3 0 3104 3273 582487381 582487550 7.630000e-77 298.0
16 TraesCS7A01G178600 chr4A 78.322 286 51 5 3274 3559 106578112 106577838 1.340000e-39 174.0
17 TraesCS7A01G178600 chr3A 97.674 172 4 0 3103 3274 720626159 720625988 2.740000e-76 296.0
18 TraesCS7A01G178600 chr3A 97.633 169 4 0 3105 3273 24047591 24047423 1.280000e-74 291.0
19 TraesCS7A01G178600 chr1A 98.225 169 3 0 3105 3273 497484324 497484156 2.740000e-76 296.0
20 TraesCS7A01G178600 chr1A 96.471 170 6 0 3104 3273 562782311 562782142 7.680000e-72 281.0
21 TraesCS7A01G178600 chr1A 94.340 53 3 0 3274 3326 164855021 164854969 8.370000e-12 82.4
22 TraesCS7A01G178600 chr1A 94.340 53 3 0 3274 3326 436095676 436095624 8.370000e-12 82.4
23 TraesCS7A01G178600 chr2A 97.093 172 5 0 3102 3273 31612031 31612202 1.280000e-74 291.0
24 TraesCS7A01G178600 chr2A 97.633 169 4 0 3105 3273 776155469 776155301 1.280000e-74 291.0
25 TraesCS7A01G178600 chr5A 95.322 171 8 0 3105 3275 379345354 379345524 4.630000e-69 272.0
26 TraesCS7A01G178600 chr5A 77.208 351 54 15 3274 3622 14489558 14489884 8.020000e-42 182.0
27 TraesCS7A01G178600 chr5A 71.910 534 123 23 1964 2485 529080083 529079565 2.950000e-26 130.0
28 TraesCS7A01G178600 chr5A 79.839 124 25 0 1027 1150 40080829 40080706 1.390000e-14 91.6
29 TraesCS7A01G178600 chr1D 78.078 333 58 11 3291 3622 270233461 270233779 2.860000e-46 196.0
30 TraesCS7A01G178600 chr1D 83.696 92 13 2 3508 3598 50407133 50407043 6.470000e-13 86.1
31 TraesCS7A01G178600 chr1D 94.340 53 3 0 3274 3326 119458928 119458876 8.370000e-12 82.4
32 TraesCS7A01G178600 chr1D 94.340 53 3 0 3274 3326 319819189 319819137 8.370000e-12 82.4
33 TraesCS7A01G178600 chr1D 94.340 53 3 0 3274 3326 371859860 371859912 8.370000e-12 82.4
34 TraesCS7A01G178600 chr2D 87.313 134 16 1 1069 1202 315972868 315972736 6.290000e-33 152.0
35 TraesCS7A01G178600 chr2D 90.323 93 9 0 1404 1496 315972735 315972643 4.930000e-24 122.0
36 TraesCS7A01G178600 chr5B 73.740 377 84 13 2027 2391 503115650 503115277 2.280000e-27 134.0
37 TraesCS7A01G178600 chr5B 74.771 218 43 11 1032 1242 53553508 53553296 1.800000e-13 87.9
38 TraesCS7A01G178600 chr3B 94.545 55 3 0 3272 3326 198254302 198254356 6.470000e-13 86.1
39 TraesCS7A01G178600 chr6A 94.340 53 3 0 3274 3326 534259060 534259008 8.370000e-12 82.4
40 TraesCS7A01G178600 chr6A 97.778 45 1 0 3001 3045 168029615 168029659 1.080000e-10 78.7
41 TraesCS7A01G178600 chr4D 94.340 53 3 0 3274 3326 166306876 166306928 8.370000e-12 82.4
42 TraesCS7A01G178600 chr3D 89.583 48 3 1 2865 2910 306093753 306093800 3.920000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G178600 chr7A 133044966 133048600 3634 False 6713.00 6713 100.00000 1 3635 1 chr7A.!!$F1 3634
1 TraesCS7A01G178600 chr7B 95916431 95919185 2754 False 3819.00 3819 91.73400 15 2799 1 chr7B.!!$F1 2784
2 TraesCS7A01G178600 chr7D 134100518 134104289 3771 False 1207.75 3140 89.11975 1 3635 4 chr7D.!!$F1 3634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 436 0.105039 GAGAGAACGGGATGGCGAAT 59.895 55.0 0.00 0.00 0.00 3.34 F
900 914 0.601558 TCGCCTATTTAGCTAGCCCG 59.398 55.0 12.13 2.04 0.00 6.13 F
1535 1581 0.038159 CCTATCTGAACGATCGGCCC 60.038 60.0 20.98 8.31 33.48 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1565 0.034059 GATGGGCCGATCGTTCAGAT 59.966 55.0 12.37 0.00 43.51 2.90 R
2603 2654 0.318107 CGTGACTTTGGCAAGCTTGG 60.318 55.0 27.10 12.81 32.57 3.61 R
3176 3587 0.034670 ATCTCAGCCCAGTTTCAGCC 60.035 55.0 0.00 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.879026 CTCATCACTCATCAGCAATGGG 59.121 50.000 0.00 0.00 42.07 4.00
61 62 2.506644 TCATCACTCATCAGCAATGGGA 59.493 45.455 6.02 0.36 38.20 4.37
62 63 3.137728 TCATCACTCATCAGCAATGGGAT 59.862 43.478 6.02 2.35 38.20 3.85
88 89 0.385390 AAAACAAGAACGCCCTGCAG 59.615 50.000 6.78 6.78 0.00 4.41
106 107 0.250338 AGTCCCAGAAGCGAACAACC 60.250 55.000 0.00 0.00 0.00 3.77
142 143 1.563410 AGATTTCCTGGGGCTTCTCAG 59.437 52.381 0.00 0.00 0.00 3.35
160 161 1.153086 GTTGCAGGGATCGCCATCT 60.153 57.895 6.09 0.00 35.15 2.90
164 165 0.673022 GCAGGGATCGCCATCTCATC 60.673 60.000 6.09 0.00 30.77 2.92
168 169 1.668294 GATCGCCATCTCATCCCGT 59.332 57.895 0.00 0.00 0.00 5.28
245 246 3.733224 CGATGCTCGGAAGAATAGACAAG 59.267 47.826 0.00 0.00 41.32 3.16
304 306 1.741770 GCGGTCATCGTTTCCTGCT 60.742 57.895 0.00 0.00 41.72 4.24
343 345 0.865769 CGGCTGCCGTAAACATATCC 59.134 55.000 31.72 0.00 42.73 2.59
418 420 4.475444 AATCTCGGGGGCGGGAGA 62.475 66.667 3.74 3.74 42.96 3.71
427 429 3.155167 GGCGGGAGAGAACGGGAT 61.155 66.667 0.00 0.00 0.00 3.85
434 436 0.105039 GAGAGAACGGGATGGCGAAT 59.895 55.000 0.00 0.00 0.00 3.34
532 534 4.985538 GGATACTGGATAGTGGATACGG 57.014 50.000 0.00 0.00 37.78 4.02
533 535 3.130693 GGATACTGGATAGTGGATACGGC 59.869 52.174 0.00 0.00 37.78 5.68
534 536 2.383442 ACTGGATAGTGGATACGGCT 57.617 50.000 0.00 0.00 42.51 5.52
535 537 2.240279 ACTGGATAGTGGATACGGCTC 58.760 52.381 0.00 0.00 42.51 4.70
536 538 2.158445 ACTGGATAGTGGATACGGCTCT 60.158 50.000 0.00 0.00 42.51 4.09
537 539 3.074094 ACTGGATAGTGGATACGGCTCTA 59.926 47.826 0.00 0.00 42.51 2.43
538 540 3.418995 TGGATAGTGGATACGGCTCTAC 58.581 50.000 0.00 0.00 42.51 2.59
539 541 2.419324 GGATAGTGGATACGGCTCTACG 59.581 54.545 0.00 0.00 42.51 3.51
540 542 1.233019 TAGTGGATACGGCTCTACGC 58.767 55.000 0.00 0.00 42.51 4.42
576 578 9.268255 GTATTGGTTTTGCTTTTGTTTTTGTAC 57.732 29.630 0.00 0.00 0.00 2.90
577 579 6.861065 TGGTTTTGCTTTTGTTTTTGTACA 57.139 29.167 0.00 0.00 0.00 2.90
578 580 6.659776 TGGTTTTGCTTTTGTTTTTGTACAC 58.340 32.000 0.00 0.00 0.00 2.90
579 581 6.483640 TGGTTTTGCTTTTGTTTTTGTACACT 59.516 30.769 0.00 0.00 0.00 3.55
580 582 7.012421 TGGTTTTGCTTTTGTTTTTGTACACTT 59.988 29.630 0.00 0.00 0.00 3.16
581 583 8.496751 GGTTTTGCTTTTGTTTTTGTACACTTA 58.503 29.630 0.00 0.00 0.00 2.24
584 586 8.988064 TTGCTTTTGTTTTTGTACACTTATCA 57.012 26.923 0.00 0.00 0.00 2.15
593 595 9.651718 GTTTTTGTACACTTATCAGTTTCTCTG 57.348 33.333 0.00 0.00 44.85 3.35
655 665 3.068691 TCGACAGCGAGGGGAAGG 61.069 66.667 0.00 0.00 42.51 3.46
664 674 1.690985 GAGGGGAAGGAGGGTGAGG 60.691 68.421 0.00 0.00 0.00 3.86
677 687 1.301293 GTGAGGCCAGGGAAGAAGG 59.699 63.158 5.01 0.00 0.00 3.46
775 789 0.811915 CGGAGGACACGATCTTGTCT 59.188 55.000 26.03 15.24 44.63 3.41
776 790 1.202200 CGGAGGACACGATCTTGTCTC 60.202 57.143 26.03 20.70 44.63 3.36
868 882 3.945240 GACGACGACGACGATGAC 58.055 61.111 25.15 10.08 42.66 3.06
869 883 1.579626 GACGACGACGACGATGACC 60.580 63.158 25.15 6.03 42.66 4.02
870 884 2.231745 GACGACGACGACGATGACCA 62.232 60.000 25.15 0.00 42.66 4.02
871 885 1.580385 CGACGACGACGATGACCAG 60.580 63.158 15.32 0.00 42.66 4.00
872 886 1.868251 GACGACGACGATGACCAGC 60.868 63.158 15.32 0.00 42.66 4.85
873 887 2.254703 GACGACGACGATGACCAGCT 62.255 60.000 15.32 0.00 42.66 4.24
877 891 1.299468 CGACGATGACCAGCTAGCC 60.299 63.158 12.13 0.00 0.00 3.93
900 914 0.601558 TCGCCTATTTAGCTAGCCCG 59.398 55.000 12.13 2.04 0.00 6.13
1025 1071 4.247380 GGCCATGGCGGAGGAGAG 62.247 72.222 29.90 0.00 43.06 3.20
1155 1201 4.077188 GAGCACAACCACGAGCGC 62.077 66.667 0.00 0.00 0.00 5.92
1515 1561 1.666553 CACGCCGCTCAAAGGTACA 60.667 57.895 0.00 0.00 0.00 2.90
1516 1562 1.666872 ACGCCGCTCAAAGGTACAC 60.667 57.895 0.00 0.00 0.00 2.90
1517 1563 2.388232 CGCCGCTCAAAGGTACACC 61.388 63.158 0.00 0.00 0.00 4.16
1531 1577 3.564644 AGGTACACCTATCTGAACGATCG 59.435 47.826 14.88 14.88 46.48 3.69
1532 1578 3.304525 GGTACACCTATCTGAACGATCGG 60.305 52.174 20.98 0.89 40.05 4.18
1533 1579 1.067212 ACACCTATCTGAACGATCGGC 59.933 52.381 20.98 11.58 38.27 5.54
1534 1580 0.674534 ACCTATCTGAACGATCGGCC 59.325 55.000 20.98 10.92 38.27 6.13
1535 1581 0.038159 CCTATCTGAACGATCGGCCC 60.038 60.000 20.98 8.31 33.48 5.80
1566 1616 1.191868 CTCGTCATGCTTGATGATCGC 59.808 52.381 21.06 1.14 44.78 4.58
1592 1642 3.116463 CGCACATGGATGCTGCAT 58.884 55.556 16.20 16.20 43.80 3.96
2367 2418 0.973632 ACCAGTACATCAACAGCCGA 59.026 50.000 0.00 0.00 0.00 5.54
2470 2521 3.332393 ATGGGCGGAGGGGAGAAGA 62.332 63.158 0.00 0.00 0.00 2.87
2511 2562 2.659610 GCTGAGTGGAAGGCTCGT 59.340 61.111 0.00 0.00 35.85 4.18
2820 2879 6.736110 AACTATGCAAATCATGGGCTTAAT 57.264 33.333 0.00 0.00 37.91 1.40
2822 2881 3.823281 TGCAAATCATGGGCTTAATGG 57.177 42.857 0.00 0.00 0.00 3.16
2839 2898 3.532155 GCATCTCCGAGGGCGACT 61.532 66.667 0.00 0.00 40.82 4.18
2847 2907 1.586154 CCGAGGGCGACTGCAAAATT 61.586 55.000 0.00 0.00 45.35 1.82
2853 2913 1.131315 GGCGACTGCAAAATTCCTCTC 59.869 52.381 0.00 0.00 45.35 3.20
2855 2915 1.201965 CGACTGCAAAATTCCTCTCGC 60.202 52.381 0.00 0.00 0.00 5.03
2894 3065 3.512516 GCAGCCATCCAACGCCTC 61.513 66.667 0.00 0.00 0.00 4.70
2895 3066 2.825836 CAGCCATCCAACGCCTCC 60.826 66.667 0.00 0.00 0.00 4.30
2914 3085 3.149981 TCCCGCATACATTTCAACAACA 58.850 40.909 0.00 0.00 0.00 3.33
2931 3102 8.514136 TCAACAACATTTTAAATCAATCCGAC 57.486 30.769 0.00 0.00 0.00 4.79
2946 3117 6.098679 TCAATCCGACAAAAATTATGCAAGG 58.901 36.000 0.00 0.00 0.00 3.61
2949 3120 3.851403 CCGACAAAAATTATGCAAGGACG 59.149 43.478 0.00 0.00 0.00 4.79
2952 3123 3.006323 ACAAAAATTATGCAAGGACGGCA 59.994 39.130 0.00 0.00 46.66 5.69
2958 3129 1.098050 ATGCAAGGACGGCAGATTTC 58.902 50.000 0.00 0.00 45.68 2.17
2967 3138 5.930135 AGGACGGCAGATTTCATATAAACT 58.070 37.500 0.00 0.00 0.00 2.66
2968 3139 7.062749 AGGACGGCAGATTTCATATAAACTA 57.937 36.000 0.00 0.00 0.00 2.24
2972 3143 9.856488 GACGGCAGATTTCATATAAACTAGATA 57.144 33.333 0.00 0.00 0.00 1.98
3046 3217 1.041447 AACTAGTCTATGGCCGGCGT 61.041 55.000 22.54 14.61 0.00 5.68
3048 3219 1.452953 CTAGTCTATGGCCGGCGTCA 61.453 60.000 22.54 14.78 0.00 4.35
3076 3487 2.327940 GATTGTGTATGCCGGCGC 59.672 61.111 23.90 15.15 0.00 6.53
3082 3493 3.508840 GTATGCCGGCGCTGCTTT 61.509 61.111 23.90 7.15 35.36 3.51
3094 3505 0.680921 GCTGCTTTGATGGTGGCCTA 60.681 55.000 3.32 0.00 0.00 3.93
3096 3507 0.403655 TGCTTTGATGGTGGCCTACA 59.596 50.000 3.32 2.79 0.00 2.74
3097 3508 1.005805 TGCTTTGATGGTGGCCTACAT 59.994 47.619 11.76 11.76 0.00 2.29
3098 3509 1.406539 GCTTTGATGGTGGCCTACATG 59.593 52.381 15.94 0.00 0.00 3.21
3099 3510 2.026641 CTTTGATGGTGGCCTACATGG 58.973 52.381 15.94 2.46 39.35 3.66
3100 3511 0.258484 TTGATGGTGGCCTACATGGG 59.742 55.000 15.94 0.00 36.00 4.00
3101 3512 0.623031 TGATGGTGGCCTACATGGGA 60.623 55.000 15.94 0.00 36.00 4.37
3102 3513 0.550914 GATGGTGGCCTACATGGGAA 59.449 55.000 15.94 0.00 36.00 3.97
3103 3514 0.258774 ATGGTGGCCTACATGGGAAC 59.741 55.000 3.32 0.00 36.00 3.62
3119 3530 3.372660 GGAACCAGTAGCGAATCTAGG 57.627 52.381 0.00 0.00 0.00 3.02
3120 3531 2.957006 GGAACCAGTAGCGAATCTAGGA 59.043 50.000 0.00 0.00 0.00 2.94
3121 3532 3.574826 GGAACCAGTAGCGAATCTAGGAT 59.425 47.826 0.00 0.00 0.00 3.24
3122 3533 4.551388 GAACCAGTAGCGAATCTAGGATG 58.449 47.826 0.00 0.00 0.00 3.51
3123 3534 3.833732 ACCAGTAGCGAATCTAGGATGA 58.166 45.455 0.00 0.00 0.00 2.92
3124 3535 4.215908 ACCAGTAGCGAATCTAGGATGAA 58.784 43.478 0.00 0.00 0.00 2.57
3125 3536 4.649674 ACCAGTAGCGAATCTAGGATGAAA 59.350 41.667 0.00 0.00 0.00 2.69
3126 3537 5.305644 ACCAGTAGCGAATCTAGGATGAAAT 59.694 40.000 0.00 0.00 0.00 2.17
3127 3538 6.183361 ACCAGTAGCGAATCTAGGATGAAATT 60.183 38.462 0.00 0.00 0.00 1.82
3128 3539 6.146837 CCAGTAGCGAATCTAGGATGAAATTG 59.853 42.308 0.00 0.00 0.00 2.32
3129 3540 6.925718 CAGTAGCGAATCTAGGATGAAATTGA 59.074 38.462 0.00 0.00 0.00 2.57
3130 3541 7.439356 CAGTAGCGAATCTAGGATGAAATTGAA 59.561 37.037 0.00 0.00 0.00 2.69
3131 3542 6.857777 AGCGAATCTAGGATGAAATTGAAG 57.142 37.500 0.00 0.00 0.00 3.02
3132 3543 5.762218 AGCGAATCTAGGATGAAATTGAAGG 59.238 40.000 0.00 0.00 0.00 3.46
3133 3544 5.049129 GCGAATCTAGGATGAAATTGAAGGG 60.049 44.000 0.00 0.00 0.00 3.95
3134 3545 5.049129 CGAATCTAGGATGAAATTGAAGGGC 60.049 44.000 0.00 0.00 0.00 5.19
3135 3546 4.860802 TCTAGGATGAAATTGAAGGGCA 57.139 40.909 0.00 0.00 0.00 5.36
3136 3547 4.785301 TCTAGGATGAAATTGAAGGGCAG 58.215 43.478 0.00 0.00 0.00 4.85
3137 3548 2.743553 AGGATGAAATTGAAGGGCAGG 58.256 47.619 0.00 0.00 0.00 4.85
3138 3549 1.137675 GGATGAAATTGAAGGGCAGGC 59.862 52.381 0.00 0.00 0.00 4.85
3139 3550 2.105766 GATGAAATTGAAGGGCAGGCT 58.894 47.619 0.00 0.00 0.00 4.58
3140 3551 1.549203 TGAAATTGAAGGGCAGGCTC 58.451 50.000 0.00 0.00 0.00 4.70
3141 3552 1.203038 TGAAATTGAAGGGCAGGCTCA 60.203 47.619 0.00 0.00 0.00 4.26
3142 3553 1.895131 GAAATTGAAGGGCAGGCTCAA 59.105 47.619 1.65 1.65 33.82 3.02
3143 3554 1.260544 AATTGAAGGGCAGGCTCAAC 58.739 50.000 1.21 0.00 32.19 3.18
3144 3555 0.407139 ATTGAAGGGCAGGCTCAACT 59.593 50.000 1.21 0.00 32.19 3.16
3145 3556 0.185901 TTGAAGGGCAGGCTCAACTT 59.814 50.000 0.00 0.00 0.00 2.66
3146 3557 0.250901 TGAAGGGCAGGCTCAACTTC 60.251 55.000 12.27 12.27 38.36 3.01
3147 3558 0.250901 GAAGGGCAGGCTCAACTTCA 60.251 55.000 13.62 0.00 37.92 3.02
3148 3559 0.251077 AAGGGCAGGCTCAACTTCAG 60.251 55.000 0.00 0.00 0.00 3.02
3149 3560 1.073897 GGGCAGGCTCAACTTCAGT 59.926 57.895 0.00 0.00 0.00 3.41
3150 3561 0.324943 GGGCAGGCTCAACTTCAGTA 59.675 55.000 0.00 0.00 0.00 2.74
3151 3562 1.443802 GGCAGGCTCAACTTCAGTAC 58.556 55.000 0.00 0.00 0.00 2.73
3152 3563 1.270839 GGCAGGCTCAACTTCAGTACA 60.271 52.381 0.00 0.00 0.00 2.90
3153 3564 1.801178 GCAGGCTCAACTTCAGTACAC 59.199 52.381 0.00 0.00 0.00 2.90
3154 3565 2.806745 GCAGGCTCAACTTCAGTACACA 60.807 50.000 0.00 0.00 0.00 3.72
3155 3566 3.062763 CAGGCTCAACTTCAGTACACAG 58.937 50.000 0.00 0.00 0.00 3.66
3156 3567 2.037772 AGGCTCAACTTCAGTACACAGG 59.962 50.000 0.00 0.00 0.00 4.00
3157 3568 1.801178 GCTCAACTTCAGTACACAGGC 59.199 52.381 0.00 0.00 0.00 4.85
3158 3569 2.548920 GCTCAACTTCAGTACACAGGCT 60.549 50.000 0.00 0.00 0.00 4.58
3159 3570 3.062763 CTCAACTTCAGTACACAGGCTG 58.937 50.000 14.16 14.16 0.00 4.85
3160 3571 2.698274 TCAACTTCAGTACACAGGCTGA 59.302 45.455 23.66 0.00 39.66 4.26
3161 3572 3.133901 TCAACTTCAGTACACAGGCTGAA 59.866 43.478 23.66 2.96 45.88 3.02
3162 3573 3.838244 ACTTCAGTACACAGGCTGAAA 57.162 42.857 23.66 2.56 46.82 2.69
3163 3574 3.467803 ACTTCAGTACACAGGCTGAAAC 58.532 45.455 23.66 15.10 46.82 2.78
3164 3575 3.134804 ACTTCAGTACACAGGCTGAAACT 59.865 43.478 23.66 17.08 46.82 2.66
3165 3576 3.111853 TCAGTACACAGGCTGAAACTG 57.888 47.619 27.22 27.22 38.61 3.16
3166 3577 2.146342 CAGTACACAGGCTGAAACTGG 58.854 52.381 26.29 15.57 40.23 4.00
3167 3578 1.072331 AGTACACAGGCTGAAACTGGG 59.928 52.381 23.66 0.00 44.82 4.45
3168 3579 4.907457 CACAGGCTGAAACTGGGT 57.093 55.556 23.66 0.00 40.23 4.51
3169 3580 3.116091 CACAGGCTGAAACTGGGTT 57.884 52.632 23.66 0.00 40.23 4.11
3170 3581 2.270352 CACAGGCTGAAACTGGGTTA 57.730 50.000 23.66 0.00 40.23 2.85
3171 3582 2.795329 CACAGGCTGAAACTGGGTTAT 58.205 47.619 23.66 0.00 40.23 1.89
3172 3583 2.489329 CACAGGCTGAAACTGGGTTATG 59.511 50.000 23.66 0.00 40.23 1.90
3173 3584 2.375174 ACAGGCTGAAACTGGGTTATGA 59.625 45.455 23.66 0.00 40.23 2.15
3174 3585 3.010584 ACAGGCTGAAACTGGGTTATGAT 59.989 43.478 23.66 0.00 40.23 2.45
3175 3586 3.379372 CAGGCTGAAACTGGGTTATGATG 59.621 47.826 9.42 0.00 32.38 3.07
3176 3587 2.689983 GGCTGAAACTGGGTTATGATGG 59.310 50.000 0.00 0.00 0.00 3.51
3177 3588 2.689983 GCTGAAACTGGGTTATGATGGG 59.310 50.000 0.00 0.00 0.00 4.00
3178 3589 2.689983 CTGAAACTGGGTTATGATGGGC 59.310 50.000 0.00 0.00 0.00 5.36
3179 3590 2.311542 TGAAACTGGGTTATGATGGGCT 59.688 45.455 0.00 0.00 0.00 5.19
3180 3591 2.442236 AACTGGGTTATGATGGGCTG 57.558 50.000 0.00 0.00 0.00 4.85
3181 3592 1.595311 ACTGGGTTATGATGGGCTGA 58.405 50.000 0.00 0.00 0.00 4.26
3182 3593 1.922447 ACTGGGTTATGATGGGCTGAA 59.078 47.619 0.00 0.00 0.00 3.02
3183 3594 2.311542 ACTGGGTTATGATGGGCTGAAA 59.688 45.455 0.00 0.00 0.00 2.69
3184 3595 2.689983 CTGGGTTATGATGGGCTGAAAC 59.310 50.000 0.00 0.00 0.00 2.78
3185 3596 2.311542 TGGGTTATGATGGGCTGAAACT 59.688 45.455 0.00 0.00 0.00 2.66
3186 3597 2.689983 GGGTTATGATGGGCTGAAACTG 59.310 50.000 0.00 0.00 0.00 3.16
3187 3598 2.689983 GGTTATGATGGGCTGAAACTGG 59.310 50.000 0.00 0.00 0.00 4.00
3188 3599 2.689983 GTTATGATGGGCTGAAACTGGG 59.310 50.000 0.00 0.00 0.00 4.45
3189 3600 0.685458 ATGATGGGCTGAAACTGGGC 60.685 55.000 0.00 0.00 0.00 5.36
3190 3601 1.000396 GATGGGCTGAAACTGGGCT 60.000 57.895 0.00 0.00 0.00 5.19
3191 3602 1.304713 ATGGGCTGAAACTGGGCTG 60.305 57.895 0.00 0.00 0.00 4.85
3192 3603 1.792757 ATGGGCTGAAACTGGGCTGA 61.793 55.000 0.00 0.00 0.00 4.26
3193 3604 1.676967 GGGCTGAAACTGGGCTGAG 60.677 63.158 0.00 0.00 0.00 3.35
3194 3605 1.376466 GGCTGAAACTGGGCTGAGA 59.624 57.895 0.00 0.00 0.00 3.27
3195 3606 0.034670 GGCTGAAACTGGGCTGAGAT 60.035 55.000 0.00 0.00 0.00 2.75
3196 3607 1.093159 GCTGAAACTGGGCTGAGATG 58.907 55.000 0.00 0.00 0.00 2.90
3197 3608 1.747709 CTGAAACTGGGCTGAGATGG 58.252 55.000 0.00 0.00 0.00 3.51
3198 3609 0.329261 TGAAACTGGGCTGAGATGGG 59.671 55.000 0.00 0.00 0.00 4.00
3199 3610 1.000396 AAACTGGGCTGAGATGGGC 60.000 57.895 0.00 0.00 0.00 5.36
3200 3611 1.504275 AAACTGGGCTGAGATGGGCT 61.504 55.000 0.00 0.00 0.00 5.19
3201 3612 2.192443 CTGGGCTGAGATGGGCTG 59.808 66.667 0.00 0.00 0.00 4.85
3202 3613 3.414193 TGGGCTGAGATGGGCTGG 61.414 66.667 0.00 0.00 0.00 4.85
3203 3614 4.201122 GGGCTGAGATGGGCTGGG 62.201 72.222 0.00 0.00 0.00 4.45
3204 3615 3.092511 GGCTGAGATGGGCTGGGA 61.093 66.667 0.00 0.00 0.00 4.37
3205 3616 2.459086 GGCTGAGATGGGCTGGGAT 61.459 63.158 0.00 0.00 0.00 3.85
3206 3617 1.130054 GGCTGAGATGGGCTGGGATA 61.130 60.000 0.00 0.00 0.00 2.59
3207 3618 0.324285 GCTGAGATGGGCTGGGATAG 59.676 60.000 0.00 0.00 0.00 2.08
3208 3619 0.982704 CTGAGATGGGCTGGGATAGG 59.017 60.000 0.00 0.00 0.00 2.57
3217 3628 2.371658 GCTGGGATAGGCTGGATTTT 57.628 50.000 0.00 0.00 0.00 1.82
3218 3629 3.508845 GCTGGGATAGGCTGGATTTTA 57.491 47.619 0.00 0.00 0.00 1.52
3219 3630 3.832527 GCTGGGATAGGCTGGATTTTAA 58.167 45.455 0.00 0.00 0.00 1.52
3220 3631 4.411013 GCTGGGATAGGCTGGATTTTAAT 58.589 43.478 0.00 0.00 0.00 1.40
3221 3632 4.835056 GCTGGGATAGGCTGGATTTTAATT 59.165 41.667 0.00 0.00 0.00 1.40
3222 3633 5.305386 GCTGGGATAGGCTGGATTTTAATTT 59.695 40.000 0.00 0.00 0.00 1.82
3223 3634 6.517362 GCTGGGATAGGCTGGATTTTAATTTC 60.517 42.308 0.00 0.00 0.00 2.17
3224 3635 5.534654 TGGGATAGGCTGGATTTTAATTTCG 59.465 40.000 0.00 0.00 0.00 3.46
3225 3636 5.048013 GGGATAGGCTGGATTTTAATTTCGG 60.048 44.000 0.00 0.00 0.00 4.30
3226 3637 5.768164 GGATAGGCTGGATTTTAATTTCGGA 59.232 40.000 0.00 0.00 0.00 4.55
3227 3638 6.072452 GGATAGGCTGGATTTTAATTTCGGAG 60.072 42.308 0.00 0.00 0.00 4.63
3228 3639 3.954258 AGGCTGGATTTTAATTTCGGAGG 59.046 43.478 0.00 0.00 0.00 4.30
3229 3640 3.068165 GGCTGGATTTTAATTTCGGAGGG 59.932 47.826 0.00 0.00 0.00 4.30
3230 3641 3.490933 GCTGGATTTTAATTTCGGAGGGC 60.491 47.826 0.00 0.00 0.00 5.19
3231 3642 3.699038 CTGGATTTTAATTTCGGAGGGCA 59.301 43.478 0.00 0.00 0.00 5.36
3232 3643 3.699038 TGGATTTTAATTTCGGAGGGCAG 59.301 43.478 0.00 0.00 0.00 4.85
3233 3644 3.068165 GGATTTTAATTTCGGAGGGCAGG 59.932 47.826 0.00 0.00 0.00 4.85
3234 3645 1.470051 TTTAATTTCGGAGGGCAGGC 58.530 50.000 0.00 0.00 0.00 4.85
3235 3646 0.623723 TTAATTTCGGAGGGCAGGCT 59.376 50.000 0.00 0.00 0.00 4.58
3236 3647 0.623723 TAATTTCGGAGGGCAGGCTT 59.376 50.000 0.00 0.00 0.00 4.35
3237 3648 0.967380 AATTTCGGAGGGCAGGCTTG 60.967 55.000 0.00 0.00 0.00 4.01
3238 3649 1.852157 ATTTCGGAGGGCAGGCTTGA 61.852 55.000 0.00 0.00 0.00 3.02
3239 3650 2.469465 TTTCGGAGGGCAGGCTTGAG 62.469 60.000 0.00 0.00 0.00 3.02
3251 3662 3.930504 CTTGAGCCCATCCAAGCC 58.069 61.111 0.00 0.00 34.20 4.35
3252 3663 1.305623 CTTGAGCCCATCCAAGCCT 59.694 57.895 0.00 0.00 34.20 4.58
3253 3664 1.000521 TTGAGCCCATCCAAGCCTG 60.001 57.895 0.00 0.00 0.00 4.85
3254 3665 2.832201 GAGCCCATCCAAGCCTGC 60.832 66.667 0.00 0.00 0.00 4.85
3255 3666 4.453892 AGCCCATCCAAGCCTGCC 62.454 66.667 0.00 0.00 0.00 4.85
3257 3668 4.847367 CCCATCCAAGCCTGCCCC 62.847 72.222 0.00 0.00 0.00 5.80
3258 3669 3.747579 CCATCCAAGCCTGCCCCT 61.748 66.667 0.00 0.00 0.00 4.79
3259 3670 2.361771 CATCCAAGCCTGCCCCTT 59.638 61.111 0.00 0.00 0.00 3.95
3260 3671 2.056223 CATCCAAGCCTGCCCCTTG 61.056 63.158 0.00 0.00 39.44 3.61
3263 3674 2.361771 CAAGCCTGCCCCTTGGAT 59.638 61.111 0.00 0.00 36.82 3.41
3264 3675 1.305549 CAAGCCTGCCCCTTGGATT 60.306 57.895 0.00 0.00 36.82 3.01
3265 3676 1.000866 AAGCCTGCCCCTTGGATTC 59.999 57.895 0.00 0.00 0.00 2.52
3266 3677 2.830370 GCCTGCCCCTTGGATTCG 60.830 66.667 0.00 0.00 0.00 3.34
3267 3678 2.830370 CCTGCCCCTTGGATTCGC 60.830 66.667 0.00 0.00 0.00 4.70
3268 3679 2.830370 CTGCCCCTTGGATTCGCC 60.830 66.667 0.00 0.00 37.10 5.54
3269 3680 4.794648 TGCCCCTTGGATTCGCCG 62.795 66.667 0.00 0.00 40.66 6.46
3271 3682 4.489771 CCCCTTGGATTCGCCGCT 62.490 66.667 0.00 0.00 40.66 5.52
3272 3683 3.204827 CCCTTGGATTCGCCGCTG 61.205 66.667 0.00 0.00 40.66 5.18
3351 3763 3.124921 CCGTCGGATGTGTTGGCC 61.125 66.667 4.91 0.00 0.00 5.36
3352 3764 2.358125 CGTCGGATGTGTTGGCCA 60.358 61.111 0.00 0.00 0.00 5.36
3354 3766 2.033448 TCGGATGTGTTGGCCACC 59.967 61.111 3.88 0.00 43.85 4.61
3355 3767 3.430862 CGGATGTGTTGGCCACCG 61.431 66.667 14.92 14.92 43.85 4.94
3371 3783 1.214589 CCGTTTCGTCCATCTCCGT 59.785 57.895 0.00 0.00 0.00 4.69
3372 3784 1.076533 CCGTTTCGTCCATCTCCGTG 61.077 60.000 0.00 0.00 0.00 4.94
3376 3788 0.108804 TTCGTCCATCTCCGTGAAGC 60.109 55.000 0.00 0.00 0.00 3.86
3377 3789 1.519455 CGTCCATCTCCGTGAAGCC 60.519 63.158 0.00 0.00 0.00 4.35
3379 3791 1.680989 TCCATCTCCGTGAAGCCGA 60.681 57.895 0.00 0.00 0.00 5.54
3391 3803 3.516578 AAGCCGACTTCTTTCTCCG 57.483 52.632 0.00 0.00 0.00 4.63
3392 3804 0.680061 AAGCCGACTTCTTTCTCCGT 59.320 50.000 0.00 0.00 0.00 4.69
3393 3805 0.038159 AGCCGACTTCTTTCTCCGTG 60.038 55.000 0.00 0.00 0.00 4.94
3395 3807 0.601558 CCGACTTCTTTCTCCGTGGA 59.398 55.000 0.00 0.00 0.00 4.02
3401 3813 1.376037 CTTTCTCCGTGGACAGGGC 60.376 63.158 6.18 0.00 36.36 5.19
3402 3814 3.234630 TTTCTCCGTGGACAGGGCG 62.235 63.158 6.18 0.57 36.36 6.13
3408 3820 4.382320 GTGGACAGGGCGCGGTTA 62.382 66.667 8.83 0.00 0.00 2.85
3409 3821 4.382320 TGGACAGGGCGCGGTTAC 62.382 66.667 8.83 5.48 0.00 2.50
3410 3822 4.382320 GGACAGGGCGCGGTTACA 62.382 66.667 8.83 0.00 0.00 2.41
3418 3830 0.741927 GGCGCGGTTACAGGTTACAT 60.742 55.000 8.83 0.00 0.00 2.29
3420 3832 1.717194 CGCGGTTACAGGTTACATGT 58.283 50.000 7.98 7.98 34.62 3.21
3428 3840 5.346822 GGTTACAGGTTACATGTACGTTGAG 59.653 44.000 9.46 0.00 33.01 3.02
3467 3879 2.176273 GCATGGGAGCAGCAGTACG 61.176 63.158 0.00 0.00 0.00 3.67
3474 3886 1.066114 GAGCAGCAGTACGACACGAC 61.066 60.000 0.00 0.00 0.00 4.34
3478 3890 2.253154 CAGTACGACACGACGGCA 59.747 61.111 0.00 0.00 37.61 5.69
3494 3906 2.438975 CATCCATGGCAGCCACGT 60.439 61.111 19.10 0.00 35.80 4.49
3497 3909 4.424566 CCATGGCAGCCACGTTGC 62.425 66.667 19.10 2.86 39.00 4.17
3516 3928 4.363990 CGTGCTGTCGTGCTCCCT 62.364 66.667 0.00 0.00 0.00 4.20
3552 3964 1.226717 CAACTAGCCGCTCCTCGAC 60.227 63.158 0.00 0.00 41.67 4.20
3568 3980 4.379243 ACGGGCTGAGTTGGAGCG 62.379 66.667 0.00 0.00 37.32 5.03
3573 3985 2.507992 CTGAGTTGGAGCGGCGAG 60.508 66.667 12.98 0.00 0.00 5.03
3585 3997 3.876300 GGCGAGTTGCTGAACGAT 58.124 55.556 1.51 0.00 45.43 3.73
3588 4000 1.900585 GCGAGTTGCTGAACGATGCA 61.901 55.000 0.00 0.00 41.73 3.96
3605 4017 1.743252 CACCGGCTTGGAGCTTCTC 60.743 63.158 0.00 0.00 41.99 2.87
3627 4039 3.450457 CCATCCAAGAGCTAGGCTATAGG 59.550 52.174 1.04 0.00 39.88 2.57
3630 4042 1.552792 CAAGAGCTAGGCTATAGGGGC 59.447 57.143 1.04 0.00 39.88 5.80
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 3.489416 GGCGTTCTTGTTTTTGTTCCATC 59.511 43.478 0.00 0.00 0.00 3.51
61 62 3.453424 GGCGTTCTTGTTTTTGTTCCAT 58.547 40.909 0.00 0.00 0.00 3.41
62 63 2.417515 GGGCGTTCTTGTTTTTGTTCCA 60.418 45.455 0.00 0.00 0.00 3.53
88 89 1.235281 GGGTTGTTCGCTTCTGGGAC 61.235 60.000 0.00 0.00 34.79 4.46
106 107 0.687354 ATCTTTCGGGGATCGGATGG 59.313 55.000 0.00 0.00 39.77 3.51
142 143 1.153086 AGATGGCGATCCCTGCAAC 60.153 57.895 4.94 0.00 0.00 4.17
160 161 2.623418 ATATGGGAGCTACGGGATGA 57.377 50.000 0.00 0.00 0.00 2.92
164 165 3.335579 GCTTTTATATGGGAGCTACGGG 58.664 50.000 0.00 0.00 32.54 5.28
168 169 2.647802 GGGGGCTTTTATATGGGAGCTA 59.352 50.000 0.00 0.00 35.53 3.32
245 246 8.804743 CATTTTCATATGACTTGATTGAAGCAC 58.195 33.333 4.48 0.00 34.68 4.40
374 376 2.203209 CAGGTAGCCCAATCGCCC 60.203 66.667 0.00 0.00 0.00 6.13
418 420 0.249322 CGTATTCGCCATCCCGTTCT 60.249 55.000 0.00 0.00 0.00 3.01
427 429 4.435784 CGGAATAACAAAACGTATTCGCCA 60.436 41.667 0.00 0.00 41.18 5.69
434 436 1.128321 GCCGCGGAATAACAAAACGTA 59.872 47.619 33.48 0.00 0.00 3.57
536 538 2.432874 ACCAATACAGCTACATGGCGTA 59.567 45.455 0.00 0.04 37.29 4.42
537 539 1.209504 ACCAATACAGCTACATGGCGT 59.790 47.619 0.00 0.00 37.29 5.68
538 540 1.953559 ACCAATACAGCTACATGGCG 58.046 50.000 0.00 0.00 37.29 5.69
539 541 4.423732 CAAAACCAATACAGCTACATGGC 58.576 43.478 0.00 0.00 34.45 4.40
540 542 4.158394 AGCAAAACCAATACAGCTACATGG 59.842 41.667 0.00 5.68 37.19 3.66
541 543 5.314923 AGCAAAACCAATACAGCTACATG 57.685 39.130 0.00 0.00 0.00 3.21
542 544 5.982890 AAGCAAAACCAATACAGCTACAT 57.017 34.783 0.00 0.00 0.00 2.29
543 545 5.782893 AAAGCAAAACCAATACAGCTACA 57.217 34.783 0.00 0.00 0.00 2.74
544 546 5.983118 ACAAAAGCAAAACCAATACAGCTAC 59.017 36.000 0.00 0.00 0.00 3.58
576 578 6.686630 ACTCTGACAGAGAAACTGATAAGTG 58.313 40.000 34.00 8.07 45.07 3.16
577 579 6.909550 ACTCTGACAGAGAAACTGATAAGT 57.090 37.500 34.00 9.29 45.07 2.24
578 580 9.944663 GTATACTCTGACAGAGAAACTGATAAG 57.055 37.037 34.00 8.67 45.07 1.73
579 581 9.688091 AGTATACTCTGACAGAGAAACTGATAA 57.312 33.333 34.00 11.07 45.07 1.75
580 582 9.688091 AAGTATACTCTGACAGAGAAACTGATA 57.312 33.333 34.00 16.94 45.07 2.15
581 583 8.465999 CAAGTATACTCTGACAGAGAAACTGAT 58.534 37.037 34.00 19.04 45.07 2.90
584 586 7.231722 ACACAAGTATACTCTGACAGAGAAACT 59.768 37.037 34.00 27.08 45.07 2.66
593 595 7.517101 CGACTAGCTACACAAGTATACTCTGAC 60.517 44.444 5.70 1.57 0.00 3.51
650 660 2.610859 TGGCCTCACCCTCCTTCC 60.611 66.667 3.32 0.00 37.83 3.46
651 661 2.674220 CCTGGCCTCACCCTCCTTC 61.674 68.421 3.32 0.00 37.83 3.46
652 662 2.612115 CCTGGCCTCACCCTCCTT 60.612 66.667 3.32 0.00 37.83 3.36
653 663 4.748798 CCCTGGCCTCACCCTCCT 62.749 72.222 3.32 0.00 37.83 3.69
654 664 4.741239 TCCCTGGCCTCACCCTCC 62.741 72.222 3.32 0.00 37.83 4.30
655 665 2.610859 TTCCCTGGCCTCACCCTC 60.611 66.667 3.32 0.00 37.83 4.30
664 674 2.044551 CTGCCCTTCTTCCCTGGC 60.045 66.667 0.00 0.00 44.27 4.85
775 789 2.672714 GCATATATTCACGGTCTGCGA 58.327 47.619 0.00 0.00 0.00 5.10
776 790 1.386748 CGCATATATTCACGGTCTGCG 59.613 52.381 0.00 0.00 43.82 5.18
863 877 4.453093 GCTGGCTAGCTGGTCATC 57.547 61.111 15.78 0.00 46.57 2.92
900 914 1.510623 CAAATGAGCGCGCTGTGAC 60.511 57.895 41.82 24.74 0.00 3.67
981 1027 2.267324 GGTCTGTCCTGCCTCTGC 59.733 66.667 0.00 0.00 38.26 4.26
1246 1292 2.142357 CTCACCGTCTTGTCTGGCGA 62.142 60.000 0.00 0.00 0.00 5.54
1251 1297 0.540830 AGAGCCTCACCGTCTTGTCT 60.541 55.000 0.00 0.00 0.00 3.41
1323 1369 2.685380 CCCTCTTGCTCCCCGAGT 60.685 66.667 0.00 0.00 31.39 4.18
1350 1396 3.841379 GAGCACGACGCAGGTGACA 62.841 63.158 5.40 0.00 46.13 3.58
1517 1563 0.673985 TGGGCCGATCGTTCAGATAG 59.326 55.000 15.09 0.00 40.26 2.08
1518 1564 1.272490 GATGGGCCGATCGTTCAGATA 59.728 52.381 12.37 0.00 40.26 1.98
1519 1565 0.034059 GATGGGCCGATCGTTCAGAT 59.966 55.000 12.37 0.00 43.51 2.90
1520 1566 1.441729 GATGGGCCGATCGTTCAGA 59.558 57.895 12.37 0.00 0.00 3.27
1521 1567 1.951130 CGATGGGCCGATCGTTCAG 60.951 63.158 34.20 12.64 40.32 3.02
1523 1569 3.338676 GCGATGGGCCGATCGTTC 61.339 66.667 39.02 25.73 45.73 3.95
1552 1601 1.266989 CATGCAGCGATCATCAAGCAT 59.733 47.619 3.31 3.31 42.82 3.79
1553 1602 0.661020 CATGCAGCGATCATCAAGCA 59.339 50.000 0.00 0.00 36.34 3.91
1592 1642 2.418060 CCATATACACCAGTGCGACACA 60.418 50.000 11.58 0.00 36.74 3.72
2316 2367 2.891936 GCGCAGATCATCGGCACA 60.892 61.111 10.57 0.00 37.43 4.57
2367 2418 2.577059 CACTCCCCGCACACGTAT 59.423 61.111 0.00 0.00 37.70 3.06
2470 2521 3.910490 GCGCCTCATCTCCTCGCT 61.910 66.667 0.00 0.00 42.19 4.93
2496 2547 2.343758 GCACGAGCCTTCCACTCA 59.656 61.111 0.00 0.00 33.58 3.41
2603 2654 0.318107 CGTGACTTTGGCAAGCTTGG 60.318 55.000 27.10 12.81 32.57 3.61
2604 2655 0.936297 GCGTGACTTTGGCAAGCTTG 60.936 55.000 22.44 22.44 37.68 4.01
2609 2660 2.712539 CGTGCGTGACTTTGGCAA 59.287 55.556 0.00 0.00 38.58 4.52
2645 2696 1.130054 AGTGGGACATGACACTGCCT 61.130 55.000 17.20 1.61 45.54 4.75
2724 2779 8.607459 AGCTAAATCTTGACGATAAATGACAAG 58.393 33.333 0.00 0.00 39.41 3.16
2822 2881 3.532155 AGTCGCCCTCGGAGATGC 61.532 66.667 6.58 7.93 33.47 3.91
2839 2898 1.745087 GGATGCGAGAGGAATTTTGCA 59.255 47.619 0.00 0.00 38.04 4.08
2847 2907 2.044352 TCCACGGATGCGAGAGGA 60.044 61.111 15.49 14.43 0.00 3.71
2877 3048 3.512516 GAGGCGTTGGATGGCTGC 61.513 66.667 0.60 0.00 40.38 5.25
2879 3050 4.115199 GGGAGGCGTTGGATGGCT 62.115 66.667 0.00 0.00 43.24 4.75
2890 3061 1.065551 GTTGAAATGTATGCGGGAGGC 59.934 52.381 0.00 0.00 43.96 4.70
2891 3062 2.364632 TGTTGAAATGTATGCGGGAGG 58.635 47.619 0.00 0.00 0.00 4.30
2892 3063 3.190327 TGTTGTTGAAATGTATGCGGGAG 59.810 43.478 0.00 0.00 0.00 4.30
2893 3064 3.149981 TGTTGTTGAAATGTATGCGGGA 58.850 40.909 0.00 0.00 0.00 5.14
2894 3065 3.567576 TGTTGTTGAAATGTATGCGGG 57.432 42.857 0.00 0.00 0.00 6.13
2895 3066 6.464895 AAAATGTTGTTGAAATGTATGCGG 57.535 33.333 0.00 0.00 0.00 5.69
2922 3093 6.071672 TCCTTGCATAATTTTTGTCGGATTGA 60.072 34.615 0.00 0.00 0.00 2.57
2926 3097 4.378978 CGTCCTTGCATAATTTTTGTCGGA 60.379 41.667 0.00 0.00 0.00 4.55
2931 3102 3.583806 TGCCGTCCTTGCATAATTTTTG 58.416 40.909 0.00 0.00 32.85 2.44
2936 3107 2.645838 ATCTGCCGTCCTTGCATAAT 57.354 45.000 0.00 0.00 38.22 1.28
2946 3117 8.764524 ATCTAGTTTATATGAAATCTGCCGTC 57.235 34.615 0.00 0.00 0.00 4.79
3015 3186 7.147776 GGCCATAGACTAGTTTTACCTTAGTCA 60.148 40.741 0.00 1.44 39.50 3.41
3051 3222 2.930040 CGGCATACACAATCGGATATCC 59.070 50.000 12.14 12.14 0.00 2.59
3060 3471 2.124736 AGCGCCGGCATACACAAT 60.125 55.556 28.98 0.00 43.41 2.71
3070 3481 4.183686 CCATCAAAGCAGCGCCGG 62.184 66.667 2.29 0.00 0.00 6.13
3076 3487 1.098050 GTAGGCCACCATCAAAGCAG 58.902 55.000 5.01 0.00 0.00 4.24
3080 3491 1.341877 CCCATGTAGGCCACCATCAAA 60.342 52.381 5.01 0.00 35.39 2.69
3082 3493 0.623031 TCCCATGTAGGCCACCATCA 60.623 55.000 5.01 0.00 35.39 3.07
3094 3505 0.981183 TTCGCTACTGGTTCCCATGT 59.019 50.000 0.00 0.00 30.82 3.21
3096 3507 2.119495 AGATTCGCTACTGGTTCCCAT 58.881 47.619 0.00 0.00 30.82 4.00
3097 3508 1.568504 AGATTCGCTACTGGTTCCCA 58.431 50.000 0.00 0.00 0.00 4.37
3098 3509 2.036089 CCTAGATTCGCTACTGGTTCCC 59.964 54.545 0.00 0.00 0.00 3.97
3099 3510 2.957006 TCCTAGATTCGCTACTGGTTCC 59.043 50.000 0.00 0.00 0.00 3.62
3100 3511 4.278669 TCATCCTAGATTCGCTACTGGTTC 59.721 45.833 0.00 0.00 0.00 3.62
3101 3512 4.215908 TCATCCTAGATTCGCTACTGGTT 58.784 43.478 0.00 0.00 0.00 3.67
3102 3513 3.833732 TCATCCTAGATTCGCTACTGGT 58.166 45.455 0.00 0.00 0.00 4.00
3103 3514 4.855715 TTCATCCTAGATTCGCTACTGG 57.144 45.455 0.00 0.00 0.00 4.00
3104 3515 6.925718 TCAATTTCATCCTAGATTCGCTACTG 59.074 38.462 0.00 0.00 0.00 2.74
3105 3516 7.055667 TCAATTTCATCCTAGATTCGCTACT 57.944 36.000 0.00 0.00 0.00 2.57
3106 3517 7.095439 CCTTCAATTTCATCCTAGATTCGCTAC 60.095 40.741 0.00 0.00 0.00 3.58
3107 3518 6.931281 CCTTCAATTTCATCCTAGATTCGCTA 59.069 38.462 0.00 0.00 0.00 4.26
3108 3519 5.762218 CCTTCAATTTCATCCTAGATTCGCT 59.238 40.000 0.00 0.00 0.00 4.93
3109 3520 5.049129 CCCTTCAATTTCATCCTAGATTCGC 60.049 44.000 0.00 0.00 0.00 4.70
3110 3521 5.049129 GCCCTTCAATTTCATCCTAGATTCG 60.049 44.000 0.00 0.00 0.00 3.34
3111 3522 5.829924 TGCCCTTCAATTTCATCCTAGATTC 59.170 40.000 0.00 0.00 0.00 2.52
3112 3523 5.769835 TGCCCTTCAATTTCATCCTAGATT 58.230 37.500 0.00 0.00 0.00 2.40
3113 3524 5.383476 CTGCCCTTCAATTTCATCCTAGAT 58.617 41.667 0.00 0.00 0.00 1.98
3114 3525 4.385643 CCTGCCCTTCAATTTCATCCTAGA 60.386 45.833 0.00 0.00 0.00 2.43
3115 3526 3.887716 CCTGCCCTTCAATTTCATCCTAG 59.112 47.826 0.00 0.00 0.00 3.02
3116 3527 3.902218 CCTGCCCTTCAATTTCATCCTA 58.098 45.455 0.00 0.00 0.00 2.94
3117 3528 2.743553 CCTGCCCTTCAATTTCATCCT 58.256 47.619 0.00 0.00 0.00 3.24
3118 3529 1.137675 GCCTGCCCTTCAATTTCATCC 59.862 52.381 0.00 0.00 0.00 3.51
3119 3530 2.100418 GAGCCTGCCCTTCAATTTCATC 59.900 50.000 0.00 0.00 0.00 2.92
3120 3531 2.105766 GAGCCTGCCCTTCAATTTCAT 58.894 47.619 0.00 0.00 0.00 2.57
3121 3532 1.203038 TGAGCCTGCCCTTCAATTTCA 60.203 47.619 0.00 0.00 0.00 2.69
3122 3533 1.549203 TGAGCCTGCCCTTCAATTTC 58.451 50.000 0.00 0.00 0.00 2.17
3123 3534 1.620323 GTTGAGCCTGCCCTTCAATTT 59.380 47.619 0.00 0.00 33.82 1.82
3124 3535 1.203100 AGTTGAGCCTGCCCTTCAATT 60.203 47.619 0.00 0.00 33.82 2.32
3125 3536 0.407139 AGTTGAGCCTGCCCTTCAAT 59.593 50.000 0.00 0.00 33.82 2.57
3126 3537 0.185901 AAGTTGAGCCTGCCCTTCAA 59.814 50.000 0.00 0.00 0.00 2.69
3127 3538 0.250901 GAAGTTGAGCCTGCCCTTCA 60.251 55.000 0.00 0.00 33.43 3.02
3128 3539 0.250901 TGAAGTTGAGCCTGCCCTTC 60.251 55.000 0.00 0.00 33.74 3.46
3129 3540 0.251077 CTGAAGTTGAGCCTGCCCTT 60.251 55.000 0.00 0.00 0.00 3.95
3130 3541 1.377994 CTGAAGTTGAGCCTGCCCT 59.622 57.895 0.00 0.00 0.00 5.19
3131 3542 0.324943 TACTGAAGTTGAGCCTGCCC 59.675 55.000 0.00 0.00 0.00 5.36
3132 3543 1.270839 TGTACTGAAGTTGAGCCTGCC 60.271 52.381 0.00 0.00 0.00 4.85
3133 3544 1.801178 GTGTACTGAAGTTGAGCCTGC 59.199 52.381 0.00 0.00 0.00 4.85
3134 3545 3.062763 CTGTGTACTGAAGTTGAGCCTG 58.937 50.000 0.00 0.00 0.00 4.85
3135 3546 2.037772 CCTGTGTACTGAAGTTGAGCCT 59.962 50.000 0.00 0.00 0.00 4.58
3136 3547 2.417719 CCTGTGTACTGAAGTTGAGCC 58.582 52.381 0.00 0.00 0.00 4.70
3137 3548 1.801178 GCCTGTGTACTGAAGTTGAGC 59.199 52.381 0.00 0.00 0.00 4.26
3138 3549 3.062763 CAGCCTGTGTACTGAAGTTGAG 58.937 50.000 0.00 0.00 35.90 3.02
3139 3550 2.698274 TCAGCCTGTGTACTGAAGTTGA 59.302 45.455 0.00 0.00 39.89 3.18
3140 3551 3.111853 TCAGCCTGTGTACTGAAGTTG 57.888 47.619 0.00 0.00 39.89 3.16
3141 3552 3.838244 TTCAGCCTGTGTACTGAAGTT 57.162 42.857 1.49 0.00 45.48 2.66
3145 3556 2.224281 CCAGTTTCAGCCTGTGTACTGA 60.224 50.000 18.36 0.00 39.88 3.41
3146 3557 2.146342 CCAGTTTCAGCCTGTGTACTG 58.854 52.381 13.09 13.09 38.52 2.74
3147 3558 1.072331 CCCAGTTTCAGCCTGTGTACT 59.928 52.381 0.00 0.00 0.00 2.73
3148 3559 1.202770 ACCCAGTTTCAGCCTGTGTAC 60.203 52.381 0.00 0.00 0.00 2.90
3149 3560 1.136828 ACCCAGTTTCAGCCTGTGTA 58.863 50.000 0.00 0.00 0.00 2.90
3150 3561 0.258774 AACCCAGTTTCAGCCTGTGT 59.741 50.000 0.00 0.00 0.00 3.72
3151 3562 2.270352 TAACCCAGTTTCAGCCTGTG 57.730 50.000 0.00 0.00 0.00 3.66
3152 3563 2.375174 TCATAACCCAGTTTCAGCCTGT 59.625 45.455 0.00 0.00 0.00 4.00
3153 3564 3.071874 TCATAACCCAGTTTCAGCCTG 57.928 47.619 0.00 0.00 0.00 4.85
3154 3565 3.624777 CATCATAACCCAGTTTCAGCCT 58.375 45.455 0.00 0.00 0.00 4.58
3155 3566 2.689983 CCATCATAACCCAGTTTCAGCC 59.310 50.000 0.00 0.00 0.00 4.85
3156 3567 2.689983 CCCATCATAACCCAGTTTCAGC 59.310 50.000 0.00 0.00 0.00 4.26
3157 3568 2.689983 GCCCATCATAACCCAGTTTCAG 59.310 50.000 0.00 0.00 0.00 3.02
3158 3569 2.311542 AGCCCATCATAACCCAGTTTCA 59.688 45.455 0.00 0.00 0.00 2.69
3159 3570 2.689983 CAGCCCATCATAACCCAGTTTC 59.310 50.000 0.00 0.00 0.00 2.78
3160 3571 2.311542 TCAGCCCATCATAACCCAGTTT 59.688 45.455 0.00 0.00 0.00 2.66
3161 3572 1.922447 TCAGCCCATCATAACCCAGTT 59.078 47.619 0.00 0.00 0.00 3.16
3162 3573 1.595311 TCAGCCCATCATAACCCAGT 58.405 50.000 0.00 0.00 0.00 4.00
3163 3574 2.689983 GTTTCAGCCCATCATAACCCAG 59.310 50.000 0.00 0.00 0.00 4.45
3164 3575 2.311542 AGTTTCAGCCCATCATAACCCA 59.688 45.455 0.00 0.00 0.00 4.51
3165 3576 2.689983 CAGTTTCAGCCCATCATAACCC 59.310 50.000 0.00 0.00 0.00 4.11
3166 3577 2.689983 CCAGTTTCAGCCCATCATAACC 59.310 50.000 0.00 0.00 0.00 2.85
3167 3578 2.689983 CCCAGTTTCAGCCCATCATAAC 59.310 50.000 0.00 0.00 0.00 1.89
3168 3579 2.949963 GCCCAGTTTCAGCCCATCATAA 60.950 50.000 0.00 0.00 0.00 1.90
3169 3580 1.410083 GCCCAGTTTCAGCCCATCATA 60.410 52.381 0.00 0.00 0.00 2.15
3170 3581 0.685458 GCCCAGTTTCAGCCCATCAT 60.685 55.000 0.00 0.00 0.00 2.45
3171 3582 1.304381 GCCCAGTTTCAGCCCATCA 60.304 57.895 0.00 0.00 0.00 3.07
3172 3583 1.000396 AGCCCAGTTTCAGCCCATC 60.000 57.895 0.00 0.00 0.00 3.51
3173 3584 1.304713 CAGCCCAGTTTCAGCCCAT 60.305 57.895 0.00 0.00 0.00 4.00
3174 3585 2.115910 CAGCCCAGTTTCAGCCCA 59.884 61.111 0.00 0.00 0.00 5.36
3175 3586 1.676967 CTCAGCCCAGTTTCAGCCC 60.677 63.158 0.00 0.00 0.00 5.19
3176 3587 0.034670 ATCTCAGCCCAGTTTCAGCC 60.035 55.000 0.00 0.00 0.00 4.85
3177 3588 1.093159 CATCTCAGCCCAGTTTCAGC 58.907 55.000 0.00 0.00 0.00 4.26
3178 3589 1.681166 CCCATCTCAGCCCAGTTTCAG 60.681 57.143 0.00 0.00 0.00 3.02
3179 3590 0.329261 CCCATCTCAGCCCAGTTTCA 59.671 55.000 0.00 0.00 0.00 2.69
3180 3591 1.034292 GCCCATCTCAGCCCAGTTTC 61.034 60.000 0.00 0.00 0.00 2.78
3181 3592 1.000396 GCCCATCTCAGCCCAGTTT 60.000 57.895 0.00 0.00 0.00 2.66
3182 3593 1.927527 AGCCCATCTCAGCCCAGTT 60.928 57.895 0.00 0.00 0.00 3.16
3183 3594 2.285969 AGCCCATCTCAGCCCAGT 60.286 61.111 0.00 0.00 0.00 4.00
3184 3595 2.192443 CAGCCCATCTCAGCCCAG 59.808 66.667 0.00 0.00 0.00 4.45
3185 3596 3.414193 CCAGCCCATCTCAGCCCA 61.414 66.667 0.00 0.00 0.00 5.36
3186 3597 4.201122 CCCAGCCCATCTCAGCCC 62.201 72.222 0.00 0.00 0.00 5.19
3187 3598 1.130054 TATCCCAGCCCATCTCAGCC 61.130 60.000 0.00 0.00 0.00 4.85
3188 3599 0.324285 CTATCCCAGCCCATCTCAGC 59.676 60.000 0.00 0.00 0.00 4.26
3189 3600 0.982704 CCTATCCCAGCCCATCTCAG 59.017 60.000 0.00 0.00 0.00 3.35
3190 3601 1.130054 GCCTATCCCAGCCCATCTCA 61.130 60.000 0.00 0.00 0.00 3.27
3191 3602 0.839853 AGCCTATCCCAGCCCATCTC 60.840 60.000 0.00 0.00 0.00 2.75
3192 3603 1.132554 CAGCCTATCCCAGCCCATCT 61.133 60.000 0.00 0.00 0.00 2.90
3193 3604 1.377994 CAGCCTATCCCAGCCCATC 59.622 63.158 0.00 0.00 0.00 3.51
3194 3605 2.158810 CCAGCCTATCCCAGCCCAT 61.159 63.158 0.00 0.00 0.00 4.00
3195 3606 2.642974 ATCCAGCCTATCCCAGCCCA 62.643 60.000 0.00 0.00 0.00 5.36
3196 3607 1.430369 AATCCAGCCTATCCCAGCCC 61.430 60.000 0.00 0.00 0.00 5.19
3197 3608 0.480252 AAATCCAGCCTATCCCAGCC 59.520 55.000 0.00 0.00 0.00 4.85
3198 3609 2.371658 AAAATCCAGCCTATCCCAGC 57.628 50.000 0.00 0.00 0.00 4.85
3199 3610 6.294176 CGAAATTAAAATCCAGCCTATCCCAG 60.294 42.308 0.00 0.00 0.00 4.45
3200 3611 5.534654 CGAAATTAAAATCCAGCCTATCCCA 59.465 40.000 0.00 0.00 0.00 4.37
3201 3612 5.048013 CCGAAATTAAAATCCAGCCTATCCC 60.048 44.000 0.00 0.00 0.00 3.85
3202 3613 5.768164 TCCGAAATTAAAATCCAGCCTATCC 59.232 40.000 0.00 0.00 0.00 2.59
3203 3614 6.072452 CCTCCGAAATTAAAATCCAGCCTATC 60.072 42.308 0.00 0.00 0.00 2.08
3204 3615 5.770162 CCTCCGAAATTAAAATCCAGCCTAT 59.230 40.000 0.00 0.00 0.00 2.57
3205 3616 5.130350 CCTCCGAAATTAAAATCCAGCCTA 58.870 41.667 0.00 0.00 0.00 3.93
3206 3617 3.954258 CCTCCGAAATTAAAATCCAGCCT 59.046 43.478 0.00 0.00 0.00 4.58
3207 3618 3.068165 CCCTCCGAAATTAAAATCCAGCC 59.932 47.826 0.00 0.00 0.00 4.85
3208 3619 3.490933 GCCCTCCGAAATTAAAATCCAGC 60.491 47.826 0.00 0.00 0.00 4.85
3209 3620 3.699038 TGCCCTCCGAAATTAAAATCCAG 59.301 43.478 0.00 0.00 0.00 3.86
3210 3621 3.699038 CTGCCCTCCGAAATTAAAATCCA 59.301 43.478 0.00 0.00 0.00 3.41
3211 3622 3.068165 CCTGCCCTCCGAAATTAAAATCC 59.932 47.826 0.00 0.00 0.00 3.01
3212 3623 3.490933 GCCTGCCCTCCGAAATTAAAATC 60.491 47.826 0.00 0.00 0.00 2.17
3213 3624 2.430694 GCCTGCCCTCCGAAATTAAAAT 59.569 45.455 0.00 0.00 0.00 1.82
3214 3625 1.822371 GCCTGCCCTCCGAAATTAAAA 59.178 47.619 0.00 0.00 0.00 1.52
3215 3626 1.005450 AGCCTGCCCTCCGAAATTAAA 59.995 47.619 0.00 0.00 0.00 1.52
3216 3627 0.623723 AGCCTGCCCTCCGAAATTAA 59.376 50.000 0.00 0.00 0.00 1.40
3217 3628 0.623723 AAGCCTGCCCTCCGAAATTA 59.376 50.000 0.00 0.00 0.00 1.40
3218 3629 0.967380 CAAGCCTGCCCTCCGAAATT 60.967 55.000 0.00 0.00 0.00 1.82
3219 3630 1.379044 CAAGCCTGCCCTCCGAAAT 60.379 57.895 0.00 0.00 0.00 2.17
3220 3631 2.034066 CAAGCCTGCCCTCCGAAA 59.966 61.111 0.00 0.00 0.00 3.46
3221 3632 2.927856 TCAAGCCTGCCCTCCGAA 60.928 61.111 0.00 0.00 0.00 4.30
3222 3633 3.393970 CTCAAGCCTGCCCTCCGA 61.394 66.667 0.00 0.00 0.00 4.55
3234 3645 1.035932 CAGGCTTGGATGGGCTCAAG 61.036 60.000 0.00 0.00 42.19 3.02
3235 3646 1.000521 CAGGCTTGGATGGGCTCAA 60.001 57.895 0.00 0.00 37.49 3.02
3236 3647 2.679092 CAGGCTTGGATGGGCTCA 59.321 61.111 0.00 0.00 37.49 4.26
3237 3648 2.832201 GCAGGCTTGGATGGGCTC 60.832 66.667 0.00 0.00 37.49 4.70
3238 3649 4.453892 GGCAGGCTTGGATGGGCT 62.454 66.667 0.00 0.00 40.24 5.19
3240 3651 4.847367 GGGGCAGGCTTGGATGGG 62.847 72.222 0.00 0.00 0.00 4.00
3241 3652 3.307089 AAGGGGCAGGCTTGGATGG 62.307 63.158 0.00 0.00 0.00 3.51
3242 3653 2.056223 CAAGGGGCAGGCTTGGATG 61.056 63.158 0.00 0.00 0.00 3.51
3243 3654 2.361771 CAAGGGGCAGGCTTGGAT 59.638 61.111 0.00 0.00 0.00 3.41
3245 3656 2.810488 AATCCAAGGGGCAGGCTTGG 62.810 60.000 8.35 8.35 46.46 3.61
3246 3657 1.305549 AATCCAAGGGGCAGGCTTG 60.306 57.895 0.00 0.00 0.00 4.01
3247 3658 1.000866 GAATCCAAGGGGCAGGCTT 59.999 57.895 0.00 0.00 0.00 4.35
3248 3659 2.685999 GAATCCAAGGGGCAGGCT 59.314 61.111 0.00 0.00 0.00 4.58
3249 3660 2.830370 CGAATCCAAGGGGCAGGC 60.830 66.667 0.00 0.00 0.00 4.85
3250 3661 2.830370 GCGAATCCAAGGGGCAGG 60.830 66.667 0.00 0.00 0.00 4.85
3251 3662 2.830370 GGCGAATCCAAGGGGCAG 60.830 66.667 0.00 0.00 34.01 4.85
3252 3663 4.794648 CGGCGAATCCAAGGGGCA 62.795 66.667 0.00 0.00 34.01 5.36
3254 3665 4.489771 AGCGGCGAATCCAAGGGG 62.490 66.667 12.98 0.00 34.01 4.79
3255 3666 2.947938 ATCAGCGGCGAATCCAAGGG 62.948 60.000 12.98 0.00 34.01 3.95
3256 3667 1.524621 ATCAGCGGCGAATCCAAGG 60.525 57.895 12.98 0.00 34.01 3.61
3257 3668 1.645455 CATCAGCGGCGAATCCAAG 59.355 57.895 12.98 0.00 34.01 3.61
3258 3669 1.819208 CCATCAGCGGCGAATCCAA 60.819 57.895 12.98 0.00 34.01 3.53
3259 3670 2.203056 CCATCAGCGGCGAATCCA 60.203 61.111 12.98 0.00 34.01 3.41
3260 3671 2.940890 TTCCCATCAGCGGCGAATCC 62.941 60.000 12.98 0.00 0.00 3.01
3261 3672 1.523711 TTCCCATCAGCGGCGAATC 60.524 57.895 12.98 0.00 0.00 2.52
3262 3673 1.819632 GTTCCCATCAGCGGCGAAT 60.820 57.895 12.98 0.00 0.00 3.34
3263 3674 2.435938 GTTCCCATCAGCGGCGAA 60.436 61.111 12.98 0.00 0.00 4.70
3264 3675 4.467084 GGTTCCCATCAGCGGCGA 62.467 66.667 12.98 0.00 0.00 5.54
3265 3676 4.776322 TGGTTCCCATCAGCGGCG 62.776 66.667 0.51 0.51 0.00 6.46
3266 3677 2.361104 TTGGTTCCCATCAGCGGC 60.361 61.111 0.00 0.00 31.53 6.53
3267 3678 2.409870 GCTTGGTTCCCATCAGCGG 61.410 63.158 0.00 0.00 29.42 5.52
3268 3679 1.651240 CTGCTTGGTTCCCATCAGCG 61.651 60.000 3.28 0.00 39.47 5.18
3269 3680 1.318158 CCTGCTTGGTTCCCATCAGC 61.318 60.000 0.91 0.91 37.74 4.26
3270 3681 0.682209 CCCTGCTTGGTTCCCATCAG 60.682 60.000 6.23 6.23 35.62 2.90
3271 3682 1.383799 CCCTGCTTGGTTCCCATCA 59.616 57.895 0.00 0.00 31.53 3.07
3272 3683 1.380380 CCCCTGCTTGGTTCCCATC 60.380 63.158 0.00 0.00 31.53 3.51
3297 3708 1.811359 CGAGGAGAAGTAGAACACGGT 59.189 52.381 0.00 0.00 0.00 4.83
3351 3763 1.076533 CGGAGATGGACGAAACGGTG 61.077 60.000 0.00 0.00 0.00 4.94
3352 3764 1.214589 CGGAGATGGACGAAACGGT 59.785 57.895 0.00 0.00 0.00 4.83
3354 3766 0.109458 TCACGGAGATGGACGAAACG 60.109 55.000 0.00 0.00 0.00 3.60
3355 3767 1.993370 CTTCACGGAGATGGACGAAAC 59.007 52.381 0.00 0.00 0.00 2.78
3376 3788 0.601558 TCCACGGAGAAAGAAGTCGG 59.398 55.000 0.00 0.00 0.00 4.79
3377 3789 1.000607 TGTCCACGGAGAAAGAAGTCG 60.001 52.381 0.00 0.00 0.00 4.18
3379 3791 1.344763 CCTGTCCACGGAGAAAGAAGT 59.655 52.381 0.00 0.00 0.00 3.01
3391 3803 4.382320 TAACCGCGCCCTGTCCAC 62.382 66.667 0.00 0.00 0.00 4.02
3392 3804 4.382320 GTAACCGCGCCCTGTCCA 62.382 66.667 0.00 0.00 0.00 4.02
3393 3805 4.382320 TGTAACCGCGCCCTGTCC 62.382 66.667 0.00 0.00 0.00 4.02
3395 3807 4.388499 CCTGTAACCGCGCCCTGT 62.388 66.667 0.00 0.00 0.00 4.00
3401 3813 1.717194 ACATGTAACCTGTAACCGCG 58.283 50.000 0.00 0.00 0.00 6.46
3402 3814 2.599973 CGTACATGTAACCTGTAACCGC 59.400 50.000 7.25 0.00 31.27 5.68
3404 3816 5.229423 TCAACGTACATGTAACCTGTAACC 58.771 41.667 7.25 0.00 31.27 2.85
3405 3817 6.151691 TCTCAACGTACATGTAACCTGTAAC 58.848 40.000 7.25 0.00 31.27 2.50
3406 3818 6.330004 TCTCAACGTACATGTAACCTGTAA 57.670 37.500 7.25 0.00 31.27 2.41
3407 3819 5.620654 GCTCTCAACGTACATGTAACCTGTA 60.621 44.000 7.25 0.00 0.00 2.74
3408 3820 4.806330 CTCTCAACGTACATGTAACCTGT 58.194 43.478 7.25 1.47 0.00 4.00
3409 3821 3.612860 GCTCTCAACGTACATGTAACCTG 59.387 47.826 7.25 5.18 0.00 4.00
3410 3822 3.672511 CGCTCTCAACGTACATGTAACCT 60.673 47.826 7.25 0.00 0.00 3.50
3418 3830 0.172578 CCATCCGCTCTCAACGTACA 59.827 55.000 0.00 0.00 0.00 2.90
3420 3832 1.141019 GCCATCCGCTCTCAACGTA 59.859 57.895 0.00 0.00 0.00 3.57
3452 3864 1.906333 TGTCGTACTGCTGCTCCCA 60.906 57.895 0.00 0.00 0.00 4.37
3462 3874 1.136147 GATGCCGTCGTGTCGTACT 59.864 57.895 0.00 0.00 0.00 2.73
3467 3879 2.173669 CCATGGATGCCGTCGTGTC 61.174 63.158 5.56 0.00 0.00 3.67
3478 3890 2.048023 CAACGTGGCTGCCATGGAT 61.048 57.895 36.47 25.22 44.23 3.41
3499 3911 4.363990 AGGGAGCACGACAGCACG 62.364 66.667 0.00 0.00 36.85 5.34
3500 3912 2.433318 GAGGGAGCACGACAGCAC 60.433 66.667 0.00 0.00 36.85 4.40
3501 3913 4.056125 CGAGGGAGCACGACAGCA 62.056 66.667 0.00 0.00 36.85 4.41
3534 3946 1.226717 GTCGAGGAGCGGCTAGTTG 60.227 63.158 0.60 0.00 42.46 3.16
3559 3971 2.357517 CAACTCGCCGCTCCAACT 60.358 61.111 0.00 0.00 0.00 3.16
3568 3980 1.421485 CATCGTTCAGCAACTCGCC 59.579 57.895 0.00 0.00 44.04 5.54
3571 3983 0.166814 GGTGCATCGTTCAGCAACTC 59.833 55.000 0.00 0.00 44.77 3.01
3573 3985 1.154413 CGGTGCATCGTTCAGCAAC 60.154 57.895 12.24 0.00 44.74 4.17
3579 3991 2.480555 CAAGCCGGTGCATCGTTC 59.519 61.111 19.62 9.69 41.13 3.95
3588 4000 2.665603 GAGAAGCTCCAAGCCGGT 59.334 61.111 1.90 0.00 43.77 5.28
3605 4017 3.450457 CCTATAGCCTAGCTCTTGGATGG 59.550 52.174 0.00 0.00 40.44 3.51
3611 4023 1.945580 GCCCCTATAGCCTAGCTCTT 58.054 55.000 0.00 0.00 40.44 2.85
3612 4024 3.701800 GCCCCTATAGCCTAGCTCT 57.298 57.895 0.00 0.00 40.44 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.