Multiple sequence alignment - TraesCS7A01G178300
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G178300 | chr7A | 100.000 | 2639 | 0 | 0 | 1 | 2639 | 131938231 | 131935593 | 0.000000e+00 | 4874.0 |
1 | TraesCS7A01G178300 | chr7A | 90.286 | 175 | 16 | 1 | 2095 | 2269 | 115807514 | 115807687 | 7.350000e-56 | 228.0 |
2 | TraesCS7A01G178300 | chr7A | 92.727 | 55 | 2 | 2 | 1 | 54 | 602020371 | 602020318 | 7.830000e-11 | 78.7 |
3 | TraesCS7A01G178300 | chr7B | 94.295 | 1788 | 62 | 14 | 38 | 1808 | 94631669 | 94629905 | 0.000000e+00 | 2700.0 |
4 | TraesCS7A01G178300 | chr7B | 89.224 | 232 | 23 | 1 | 2409 | 2638 | 94629808 | 94629577 | 3.320000e-74 | 289.0 |
5 | TraesCS7A01G178300 | chr7D | 95.045 | 1675 | 45 | 16 | 209 | 1866 | 133328444 | 133326791 | 0.000000e+00 | 2599.0 |
6 | TraesCS7A01G178300 | chr7D | 90.171 | 234 | 20 | 2 | 2409 | 2639 | 133323889 | 133323656 | 4.270000e-78 | 302.0 |
7 | TraesCS7A01G178300 | chr7D | 83.465 | 254 | 28 | 5 | 1863 | 2115 | 133326549 | 133326309 | 9.510000e-55 | 224.0 |
8 | TraesCS7A01G178300 | chr7D | 97.826 | 46 | 0 | 1 | 1 | 45 | 473622852 | 473622897 | 7.830000e-11 | 78.7 |
9 | TraesCS7A01G178300 | chr7D | 94.118 | 51 | 2 | 1 | 1 | 51 | 25492787 | 25492738 | 2.820000e-10 | 76.8 |
10 | TraesCS7A01G178300 | chr2D | 90.409 | 709 | 61 | 7 | 937 | 1640 | 30980131 | 30979425 | 0.000000e+00 | 926.0 |
11 | TraesCS7A01G178300 | chr2D | 87.377 | 713 | 64 | 11 | 937 | 1640 | 30935633 | 30934938 | 0.000000e+00 | 795.0 |
12 | TraesCS7A01G178300 | chr2D | 90.286 | 175 | 17 | 0 | 2102 | 2276 | 309971586 | 309971412 | 2.040000e-56 | 230.0 |
13 | TraesCS7A01G178300 | chr2D | 97.826 | 46 | 0 | 1 | 1 | 46 | 226926231 | 226926187 | 7.830000e-11 | 78.7 |
14 | TraesCS7A01G178300 | chr2D | 95.833 | 48 | 1 | 1 | 1 | 48 | 474745233 | 474745279 | 2.820000e-10 | 76.8 |
15 | TraesCS7A01G178300 | chr2B | 90.254 | 708 | 60 | 7 | 937 | 1639 | 51228693 | 51229396 | 0.000000e+00 | 917.0 |
16 | TraesCS7A01G178300 | chr2B | 89.444 | 180 | 17 | 2 | 2096 | 2275 | 514027851 | 514028028 | 2.640000e-55 | 226.0 |
17 | TraesCS7A01G178300 | chr2A | 89.888 | 712 | 62 | 9 | 937 | 1640 | 33271086 | 33270377 | 0.000000e+00 | 907.0 |
18 | TraesCS7A01G178300 | chr5A | 92.262 | 168 | 13 | 0 | 2102 | 2269 | 456897905 | 456897738 | 3.390000e-59 | 239.0 |
19 | TraesCS7A01G178300 | chr3B | 91.011 | 178 | 15 | 1 | 2096 | 2272 | 139194441 | 139194264 | 3.390000e-59 | 239.0 |
20 | TraesCS7A01G178300 | chr1D | 89.503 | 181 | 17 | 2 | 2100 | 2279 | 393753279 | 393753458 | 7.350000e-56 | 228.0 |
21 | TraesCS7A01G178300 | chr1D | 96.078 | 51 | 0 | 2 | 1 | 49 | 448103174 | 448103124 | 6.050000e-12 | 82.4 |
22 | TraesCS7A01G178300 | chr3D | 89.385 | 179 | 19 | 0 | 2093 | 2271 | 185002595 | 185002773 | 2.640000e-55 | 226.0 |
23 | TraesCS7A01G178300 | chr3D | 88.649 | 185 | 18 | 2 | 2099 | 2283 | 522773206 | 522773387 | 3.420000e-54 | 222.0 |
24 | TraesCS7A01G178300 | chr3D | 100.000 | 43 | 0 | 0 | 1 | 43 | 48422632 | 48422674 | 2.180000e-11 | 80.5 |
25 | TraesCS7A01G178300 | chr4D | 87.766 | 188 | 21 | 2 | 2104 | 2291 | 46028702 | 46028517 | 4.420000e-53 | 219.0 |
26 | TraesCS7A01G178300 | chr4B | 97.826 | 46 | 1 | 0 | 1 | 46 | 14840396 | 14840351 | 2.180000e-11 | 80.5 |
27 | TraesCS7A01G178300 | chr6A | 95.745 | 47 | 2 | 0 | 1 | 47 | 362119226 | 362119272 | 2.820000e-10 | 76.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS7A01G178300 | chr7A | 131935593 | 131938231 | 2638 | True | 4874.000000 | 4874 | 100.000000 | 1 | 2639 | 1 | chr7A.!!$R1 | 2638 |
1 | TraesCS7A01G178300 | chr7B | 94629577 | 94631669 | 2092 | True | 1494.500000 | 2700 | 91.759500 | 38 | 2638 | 2 | chr7B.!!$R1 | 2600 |
2 | TraesCS7A01G178300 | chr7D | 133323656 | 133328444 | 4788 | True | 1041.666667 | 2599 | 89.560333 | 209 | 2639 | 3 | chr7D.!!$R2 | 2430 |
3 | TraesCS7A01G178300 | chr2D | 30979425 | 30980131 | 706 | True | 926.000000 | 926 | 90.409000 | 937 | 1640 | 1 | chr2D.!!$R2 | 703 |
4 | TraesCS7A01G178300 | chr2D | 30934938 | 30935633 | 695 | True | 795.000000 | 795 | 87.377000 | 937 | 1640 | 1 | chr2D.!!$R1 | 703 |
5 | TraesCS7A01G178300 | chr2B | 51228693 | 51229396 | 703 | False | 917.000000 | 917 | 90.254000 | 937 | 1639 | 1 | chr2B.!!$F1 | 702 |
6 | TraesCS7A01G178300 | chr2A | 33270377 | 33271086 | 709 | True | 907.000000 | 907 | 89.888000 | 937 | 1640 | 1 | chr2A.!!$R1 | 703 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
453 | 459 | 0.173935 | ATTTCACATGCATGGCCACG | 59.826 | 50.0 | 29.41 | 0.0 | 0.0 | 4.94 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2387 | 5023 | 0.172803 | ACGCGAGTGGGAGTATCAAC | 59.827 | 55.0 | 15.93 | 0.0 | 46.97 | 3.18 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
20 | 21 | 3.650070 | TCCAAATTAACGTGCATTGCA | 57.350 | 38.095 | 7.38 | 7.38 | 35.60 | 4.08 |
31 | 32 | 2.328655 | TGCATTGCACGTACACATTG | 57.671 | 45.000 | 7.38 | 0.00 | 31.71 | 2.82 |
32 | 33 | 1.876156 | TGCATTGCACGTACACATTGA | 59.124 | 42.857 | 7.38 | 0.00 | 31.71 | 2.57 |
33 | 34 | 2.241722 | GCATTGCACGTACACATTGAC | 58.758 | 47.619 | 3.15 | 1.49 | 0.00 | 3.18 |
34 | 35 | 2.095768 | GCATTGCACGTACACATTGACT | 60.096 | 45.455 | 3.15 | 0.00 | 0.00 | 3.41 |
35 | 36 | 3.124466 | GCATTGCACGTACACATTGACTA | 59.876 | 43.478 | 3.15 | 0.00 | 0.00 | 2.59 |
36 | 37 | 4.724885 | GCATTGCACGTACACATTGACTAG | 60.725 | 45.833 | 3.15 | 0.00 | 0.00 | 2.57 |
91 | 94 | 8.336801 | TGAAAGAGAAAAACTAATAAGAGCCC | 57.663 | 34.615 | 0.00 | 0.00 | 0.00 | 5.19 |
111 | 114 | 4.141287 | CCCAGAAATGCCCGACATATTAA | 58.859 | 43.478 | 0.00 | 0.00 | 38.34 | 1.40 |
112 | 115 | 4.766891 | CCCAGAAATGCCCGACATATTAAT | 59.233 | 41.667 | 0.00 | 0.00 | 38.34 | 1.40 |
114 | 117 | 6.603201 | CCCAGAAATGCCCGACATATTAATAT | 59.397 | 38.462 | 1.91 | 1.91 | 38.34 | 1.28 |
115 | 118 | 7.773224 | CCCAGAAATGCCCGACATATTAATATA | 59.227 | 37.037 | 7.65 | 0.00 | 38.34 | 0.86 |
116 | 119 | 9.342308 | CCAGAAATGCCCGACATATTAATATAT | 57.658 | 33.333 | 7.65 | 0.00 | 38.34 | 0.86 |
142 | 145 | 9.930158 | TTATAAAGGCCCACTCTATTTTACATT | 57.070 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
183 | 188 | 6.520792 | GTCTAGAGACGCTTTTGTTTTACA | 57.479 | 37.500 | 0.00 | 0.00 | 35.12 | 2.41 |
187 | 192 | 4.873827 | AGAGACGCTTTTGTTTTACACAGA | 59.126 | 37.500 | 0.00 | 0.00 | 36.48 | 3.41 |
190 | 195 | 4.905269 | ACGCTTTTGTTTTACACAGAGTC | 58.095 | 39.130 | 0.00 | 0.00 | 36.48 | 3.36 |
198 | 203 | 6.436261 | TTGTTTTACACAGAGTCTAGAGACG | 58.564 | 40.000 | 4.07 | 0.00 | 42.47 | 4.18 |
303 | 308 | 1.021390 | CCGTTGCATCCAGACAGGTC | 61.021 | 60.000 | 0.00 | 0.00 | 39.02 | 3.85 |
391 | 396 | 5.478332 | ACATATCACTCTCGGAATATGCTGA | 59.522 | 40.000 | 6.56 | 0.00 | 0.00 | 4.26 |
411 | 416 | 3.189080 | TGAGCATGAACCACAAAATCTCG | 59.811 | 43.478 | 0.00 | 0.00 | 0.00 | 4.04 |
425 | 430 | 3.444703 | AATCTCGAAGATCTTGGACCG | 57.555 | 47.619 | 14.00 | 10.28 | 32.89 | 4.79 |
446 | 452 | 3.611986 | CGGCGTTAAAATTTCACATGCAT | 59.388 | 39.130 | 0.00 | 0.00 | 0.00 | 3.96 |
447 | 453 | 4.490639 | CGGCGTTAAAATTTCACATGCATG | 60.491 | 41.667 | 25.09 | 25.09 | 0.00 | 4.06 |
448 | 454 | 4.201705 | GGCGTTAAAATTTCACATGCATGG | 60.202 | 41.667 | 29.41 | 18.30 | 0.00 | 3.66 |
449 | 455 | 4.724602 | GCGTTAAAATTTCACATGCATGGC | 60.725 | 41.667 | 29.41 | 14.62 | 0.00 | 4.40 |
450 | 456 | 4.201705 | CGTTAAAATTTCACATGCATGGCC | 60.202 | 41.667 | 29.41 | 0.00 | 0.00 | 5.36 |
451 | 457 | 3.420300 | AAAATTTCACATGCATGGCCA | 57.580 | 38.095 | 29.41 | 8.56 | 0.00 | 5.36 |
452 | 458 | 2.389962 | AATTTCACATGCATGGCCAC | 57.610 | 45.000 | 29.41 | 0.00 | 0.00 | 5.01 |
453 | 459 | 0.173935 | ATTTCACATGCATGGCCACG | 59.826 | 50.000 | 29.41 | 0.00 | 0.00 | 4.94 |
454 | 460 | 2.489539 | TTTCACATGCATGGCCACGC | 62.490 | 55.000 | 29.41 | 18.86 | 0.00 | 5.34 |
455 | 461 | 3.750155 | CACATGCATGGCCACGCA | 61.750 | 61.111 | 30.82 | 30.82 | 43.45 | 5.24 |
456 | 462 | 3.751246 | ACATGCATGGCCACGCAC | 61.751 | 61.111 | 31.34 | 9.03 | 41.79 | 5.34 |
457 | 463 | 4.501714 | CATGCATGGCCACGCACC | 62.502 | 66.667 | 31.34 | 5.79 | 41.79 | 5.01 |
482 | 488 | 3.340034 | ACCCGATATCTCGTTTTGCAAA | 58.660 | 40.909 | 8.05 | 8.05 | 43.49 | 3.68 |
669 | 679 | 2.569059 | CTGCATGAGACAATGGGTAGG | 58.431 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
674 | 684 | 1.548719 | TGAGACAATGGGTAGGTCACG | 59.451 | 52.381 | 0.00 | 0.00 | 34.04 | 4.35 |
773 | 783 | 4.078980 | AGCTTTCCCTATTTCATGGACCAT | 60.079 | 41.667 | 0.00 | 0.00 | 0.00 | 3.55 |
867 | 877 | 0.175760 | GCATGTGAACCCTAGCTCGA | 59.824 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1468 | 1494 | 3.629883 | TACCAGTACAACGGCGGCG | 62.630 | 63.158 | 31.06 | 31.06 | 0.00 | 6.46 |
1643 | 1669 | 2.709475 | CGGCAGCGGCTAATTGAC | 59.291 | 61.111 | 9.17 | 0.00 | 40.87 | 3.18 |
1748 | 1781 | 4.142687 | CGAGTCTGTTCCAAGTTGTGTTTT | 60.143 | 41.667 | 1.45 | 0.00 | 0.00 | 2.43 |
1822 | 1855 | 2.249309 | AGAAGGTTGTACCCTCGGAT | 57.751 | 50.000 | 0.00 | 0.00 | 39.75 | 4.18 |
1848 | 1881 | 4.801330 | TCTCGATTGATGTACACAACCT | 57.199 | 40.909 | 0.00 | 0.00 | 0.00 | 3.50 |
1852 | 1885 | 6.147164 | TCTCGATTGATGTACACAACCTTTTC | 59.853 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1857 | 1890 | 6.951062 | TGATGTACACAACCTTTTCATTGA | 57.049 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
1904 | 2182 | 0.465460 | ACATGGCCACACGAACAAGT | 60.465 | 50.000 | 8.16 | 0.00 | 0.00 | 3.16 |
1917 | 2195 | 8.592998 | CCACACGAACAAGTTATAGAGATTTAC | 58.407 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
1968 | 2246 | 8.121086 | CCTATTGCTATGCTATCATTCAAATCG | 58.879 | 37.037 | 0.00 | 0.00 | 34.22 | 3.34 |
1971 | 2249 | 5.409520 | TGCTATGCTATCATTCAAATCGGTC | 59.590 | 40.000 | 0.00 | 0.00 | 34.22 | 4.79 |
1990 | 2268 | 2.801679 | GTCGAATAAAACCCGTGTGACA | 59.198 | 45.455 | 0.00 | 0.00 | 0.00 | 3.58 |
1991 | 2269 | 3.061322 | TCGAATAAAACCCGTGTGACAG | 58.939 | 45.455 | 0.00 | 0.00 | 0.00 | 3.51 |
1994 | 2272 | 2.243602 | TAAAACCCGTGTGACAGTCC | 57.756 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
2001 | 2279 | 1.002659 | CCGTGTGACAGTCCCCAAATA | 59.997 | 52.381 | 0.00 | 0.00 | 0.00 | 1.40 |
2003 | 2281 | 2.289444 | CGTGTGACAGTCCCCAAATAGT | 60.289 | 50.000 | 0.00 | 0.00 | 0.00 | 2.12 |
2004 | 2282 | 3.751518 | GTGTGACAGTCCCCAAATAGTT | 58.248 | 45.455 | 0.00 | 0.00 | 0.00 | 2.24 |
2005 | 2283 | 3.502211 | GTGTGACAGTCCCCAAATAGTTG | 59.498 | 47.826 | 0.00 | 0.00 | 34.25 | 3.16 |
2007 | 2285 | 2.107378 | TGACAGTCCCCAAATAGTTGCA | 59.893 | 45.455 | 0.00 | 0.00 | 33.01 | 4.08 |
2008 | 2286 | 3.245229 | TGACAGTCCCCAAATAGTTGCAT | 60.245 | 43.478 | 0.00 | 0.00 | 33.01 | 3.96 |
2009 | 2287 | 3.356290 | ACAGTCCCCAAATAGTTGCATC | 58.644 | 45.455 | 0.00 | 0.00 | 33.01 | 3.91 |
2010 | 2288 | 3.010584 | ACAGTCCCCAAATAGTTGCATCT | 59.989 | 43.478 | 2.28 | 2.28 | 33.01 | 2.90 |
2011 | 2289 | 4.227300 | ACAGTCCCCAAATAGTTGCATCTA | 59.773 | 41.667 | 6.95 | 6.95 | 33.01 | 1.98 |
2012 | 2290 | 4.818546 | CAGTCCCCAAATAGTTGCATCTAG | 59.181 | 45.833 | 10.16 | 0.00 | 33.01 | 2.43 |
2013 | 2291 | 4.721776 | AGTCCCCAAATAGTTGCATCTAGA | 59.278 | 41.667 | 10.16 | 0.00 | 33.01 | 2.43 |
2014 | 2292 | 5.059833 | GTCCCCAAATAGTTGCATCTAGAG | 58.940 | 45.833 | 10.16 | 3.20 | 33.01 | 2.43 |
2015 | 2293 | 4.721776 | TCCCCAAATAGTTGCATCTAGAGT | 59.278 | 41.667 | 10.16 | 0.00 | 33.01 | 3.24 |
2016 | 2294 | 5.059833 | CCCCAAATAGTTGCATCTAGAGTC | 58.940 | 45.833 | 10.16 | 0.00 | 33.01 | 3.36 |
2017 | 2295 | 5.163258 | CCCCAAATAGTTGCATCTAGAGTCT | 60.163 | 44.000 | 10.16 | 0.00 | 33.01 | 3.24 |
2033 | 2311 | 8.570068 | TCTAGAGTCTAGAAGAAAAGAACTCC | 57.430 | 38.462 | 24.66 | 0.00 | 0.00 | 3.85 |
2057 | 2335 | 3.000727 | AGCATCCACACGCTAAAGTAAC | 58.999 | 45.455 | 0.00 | 0.00 | 36.50 | 2.50 |
2061 | 2339 | 1.723003 | CCACACGCTAAAGTAACGACC | 59.277 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
2062 | 2340 | 2.396601 | CACACGCTAAAGTAACGACCA | 58.603 | 47.619 | 0.00 | 0.00 | 0.00 | 4.02 |
2064 | 2342 | 2.223782 | ACACGCTAAAGTAACGACCACA | 60.224 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
2068 | 2346 | 2.154389 | GCTAAAGTAACGACCACACACG | 59.846 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
2070 | 2348 | 3.435105 | AAAGTAACGACCACACACGTA | 57.565 | 42.857 | 0.00 | 0.00 | 41.87 | 3.57 |
2071 | 2349 | 3.648339 | AAGTAACGACCACACACGTAT | 57.352 | 42.857 | 0.00 | 0.00 | 41.87 | 3.06 |
2075 | 2353 | 4.637534 | AGTAACGACCACACACGTATCTAT | 59.362 | 41.667 | 0.00 | 0.00 | 41.87 | 1.98 |
2076 | 2354 | 5.817296 | AGTAACGACCACACACGTATCTATA | 59.183 | 40.000 | 0.00 | 0.00 | 41.87 | 1.31 |
2077 | 2355 | 5.762825 | AACGACCACACACGTATCTATAT | 57.237 | 39.130 | 0.00 | 0.00 | 41.87 | 0.86 |
2078 | 2356 | 5.762825 | ACGACCACACACGTATCTATATT | 57.237 | 39.130 | 0.00 | 0.00 | 40.92 | 1.28 |
2081 | 2359 | 5.209818 | ACCACACACGTATCTATATTGGG | 57.790 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
2082 | 2360 | 4.652421 | ACCACACACGTATCTATATTGGGT | 59.348 | 41.667 | 0.00 | 0.00 | 0.00 | 4.51 |
2155 | 2433 | 9.396022 | TCTTTCTAGAAATTTCAACAAGTGACT | 57.604 | 29.630 | 18.02 | 0.00 | 35.39 | 3.41 |
2158 | 2436 | 9.607988 | TTCTAGAAATTTCAACAAGTGACTACA | 57.392 | 29.630 | 19.99 | 0.00 | 35.39 | 2.74 |
2159 | 2437 | 9.778741 | TCTAGAAATTTCAACAAGTGACTACAT | 57.221 | 29.630 | 19.99 | 0.00 | 35.39 | 2.29 |
2160 | 2438 | 9.817365 | CTAGAAATTTCAACAAGTGACTACATG | 57.183 | 33.333 | 19.99 | 0.00 | 35.39 | 3.21 |
2161 | 2439 | 7.141363 | AGAAATTTCAACAAGTGACTACATGC | 58.859 | 34.615 | 19.99 | 0.00 | 35.39 | 4.06 |
2162 | 2440 | 6.389830 | AATTTCAACAAGTGACTACATGCA | 57.610 | 33.333 | 0.00 | 0.00 | 35.39 | 3.96 |
2163 | 2441 | 5.422666 | TTTCAACAAGTGACTACATGCAG | 57.577 | 39.130 | 0.00 | 0.00 | 35.39 | 4.41 |
2164 | 2442 | 4.335400 | TCAACAAGTGACTACATGCAGA | 57.665 | 40.909 | 0.00 | 0.00 | 0.00 | 4.26 |
2165 | 2443 | 4.309933 | TCAACAAGTGACTACATGCAGAG | 58.690 | 43.478 | 0.00 | 0.00 | 0.00 | 3.35 |
2166 | 2444 | 2.693069 | ACAAGTGACTACATGCAGAGC | 58.307 | 47.619 | 0.00 | 0.00 | 0.00 | 4.09 |
2167 | 2445 | 2.037641 | ACAAGTGACTACATGCAGAGCA | 59.962 | 45.455 | 0.00 | 0.00 | 44.86 | 4.26 |
2168 | 2446 | 3.069289 | CAAGTGACTACATGCAGAGCAA | 58.931 | 45.455 | 0.00 | 0.00 | 43.62 | 3.91 |
2169 | 2447 | 3.407424 | AGTGACTACATGCAGAGCAAA | 57.593 | 42.857 | 0.00 | 0.00 | 43.62 | 3.68 |
2170 | 2448 | 3.743521 | AGTGACTACATGCAGAGCAAAA | 58.256 | 40.909 | 0.00 | 0.00 | 43.62 | 2.44 |
2171 | 2449 | 4.330250 | AGTGACTACATGCAGAGCAAAAT | 58.670 | 39.130 | 0.00 | 0.00 | 43.62 | 1.82 |
2172 | 2450 | 4.155462 | AGTGACTACATGCAGAGCAAAATG | 59.845 | 41.667 | 0.00 | 0.00 | 43.62 | 2.32 |
2173 | 2451 | 4.154737 | GTGACTACATGCAGAGCAAAATGA | 59.845 | 41.667 | 0.00 | 0.00 | 43.62 | 2.57 |
2174 | 2452 | 4.393990 | TGACTACATGCAGAGCAAAATGAG | 59.606 | 41.667 | 0.00 | 0.00 | 43.62 | 2.90 |
2175 | 2453 | 4.330250 | ACTACATGCAGAGCAAAATGAGT | 58.670 | 39.130 | 0.00 | 0.00 | 43.62 | 3.41 |
2176 | 2454 | 3.570926 | ACATGCAGAGCAAAATGAGTG | 57.429 | 42.857 | 0.00 | 0.00 | 43.62 | 3.51 |
2177 | 2455 | 3.151554 | ACATGCAGAGCAAAATGAGTGA | 58.848 | 40.909 | 0.00 | 0.00 | 43.62 | 3.41 |
2178 | 2456 | 3.570975 | ACATGCAGAGCAAAATGAGTGAA | 59.429 | 39.130 | 0.00 | 0.00 | 43.62 | 3.18 |
2179 | 2457 | 4.219944 | ACATGCAGAGCAAAATGAGTGAAT | 59.780 | 37.500 | 0.00 | 0.00 | 43.62 | 2.57 |
2180 | 2458 | 4.430137 | TGCAGAGCAAAATGAGTGAATC | 57.570 | 40.909 | 0.00 | 0.00 | 34.76 | 2.52 |
2181 | 2459 | 3.120095 | TGCAGAGCAAAATGAGTGAATCG | 60.120 | 43.478 | 0.00 | 0.00 | 34.76 | 3.34 |
2182 | 2460 | 3.125829 | GCAGAGCAAAATGAGTGAATCGA | 59.874 | 43.478 | 0.00 | 0.00 | 0.00 | 3.59 |
2183 | 2461 | 4.645956 | CAGAGCAAAATGAGTGAATCGAC | 58.354 | 43.478 | 0.00 | 0.00 | 0.00 | 4.20 |
2184 | 2462 | 4.152938 | CAGAGCAAAATGAGTGAATCGACA | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 4.35 |
2185 | 2463 | 4.153117 | AGAGCAAAATGAGTGAATCGACAC | 59.847 | 41.667 | 0.00 | 0.00 | 40.60 | 3.67 |
2186 | 2464 | 3.189287 | AGCAAAATGAGTGAATCGACACC | 59.811 | 43.478 | 2.76 | 0.00 | 41.12 | 4.16 |
2187 | 2465 | 3.670627 | GCAAAATGAGTGAATCGACACCC | 60.671 | 47.826 | 2.76 | 0.00 | 41.12 | 4.61 |
2188 | 2466 | 3.703001 | AAATGAGTGAATCGACACCCT | 57.297 | 42.857 | 2.76 | 0.00 | 41.12 | 4.34 |
2189 | 2467 | 4.819105 | AAATGAGTGAATCGACACCCTA | 57.181 | 40.909 | 2.76 | 0.00 | 41.12 | 3.53 |
2190 | 2468 | 4.819105 | AATGAGTGAATCGACACCCTAA | 57.181 | 40.909 | 2.76 | 0.00 | 41.12 | 2.69 |
2191 | 2469 | 4.819105 | ATGAGTGAATCGACACCCTAAA | 57.181 | 40.909 | 2.76 | 0.00 | 41.12 | 1.85 |
2192 | 2470 | 4.610605 | TGAGTGAATCGACACCCTAAAA | 57.389 | 40.909 | 2.76 | 0.00 | 41.12 | 1.52 |
2193 | 2471 | 5.160607 | TGAGTGAATCGACACCCTAAAAT | 57.839 | 39.130 | 2.76 | 0.00 | 41.12 | 1.82 |
2194 | 2472 | 6.288941 | TGAGTGAATCGACACCCTAAAATA | 57.711 | 37.500 | 2.76 | 0.00 | 41.12 | 1.40 |
2195 | 2473 | 6.884832 | TGAGTGAATCGACACCCTAAAATAT | 58.115 | 36.000 | 2.76 | 0.00 | 41.12 | 1.28 |
2196 | 2474 | 6.761242 | TGAGTGAATCGACACCCTAAAATATG | 59.239 | 38.462 | 2.76 | 0.00 | 41.12 | 1.78 |
2197 | 2475 | 6.650120 | AGTGAATCGACACCCTAAAATATGT | 58.350 | 36.000 | 2.76 | 0.00 | 41.12 | 2.29 |
2198 | 2476 | 7.788026 | AGTGAATCGACACCCTAAAATATGTA | 58.212 | 34.615 | 2.76 | 0.00 | 41.12 | 2.29 |
2199 | 2477 | 8.429641 | AGTGAATCGACACCCTAAAATATGTAT | 58.570 | 33.333 | 2.76 | 0.00 | 41.12 | 2.29 |
2200 | 2478 | 9.701098 | GTGAATCGACACCCTAAAATATGTATA | 57.299 | 33.333 | 0.00 | 0.00 | 35.07 | 1.47 |
2267 | 2545 | 9.449719 | AGACAAATATTTAGAAACGGATGAAGT | 57.550 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2305 | 2583 | 8.190122 | TCCATATTAATTGCAGTTGCTTTAGTG | 58.810 | 33.333 | 4.47 | 4.89 | 42.66 | 2.74 |
2306 | 2584 | 7.436080 | CCATATTAATTGCAGTTGCTTTAGTGG | 59.564 | 37.037 | 4.47 | 8.81 | 42.66 | 4.00 |
2308 | 2586 | 4.935352 | AATTGCAGTTGCTTTAGTGGAA | 57.065 | 36.364 | 5.62 | 0.00 | 42.66 | 3.53 |
2309 | 2587 | 3.708563 | TTGCAGTTGCTTTAGTGGAAC | 57.291 | 42.857 | 5.62 | 0.00 | 42.66 | 3.62 |
2311 | 2589 | 4.079980 | TGCAGTTGCTTTAGTGGAACTA | 57.920 | 40.909 | 5.62 | 0.00 | 44.68 | 2.24 |
2313 | 2591 | 4.455533 | TGCAGTTGCTTTAGTGGAACTATG | 59.544 | 41.667 | 5.62 | 0.00 | 44.68 | 2.23 |
2314 | 2592 | 4.695455 | GCAGTTGCTTTAGTGGAACTATGA | 59.305 | 41.667 | 1.44 | 0.00 | 44.68 | 2.15 |
2315 | 2593 | 5.181245 | GCAGTTGCTTTAGTGGAACTATGAA | 59.819 | 40.000 | 1.44 | 0.00 | 44.68 | 2.57 |
2316 | 2594 | 6.127897 | GCAGTTGCTTTAGTGGAACTATGAAT | 60.128 | 38.462 | 1.44 | 0.00 | 44.68 | 2.57 |
2317 | 2595 | 7.575720 | GCAGTTGCTTTAGTGGAACTATGAATT | 60.576 | 37.037 | 1.44 | 0.00 | 44.68 | 2.17 |
2322 | 2600 | 2.475200 | GTGGAACTATGAATTGCCGC | 57.525 | 50.000 | 0.00 | 0.00 | 0.00 | 6.53 |
2323 | 2601 | 2.017049 | GTGGAACTATGAATTGCCGCT | 58.983 | 47.619 | 0.00 | 0.00 | 0.00 | 5.52 |
2326 | 2604 | 1.672881 | GAACTATGAATTGCCGCTGCT | 59.327 | 47.619 | 0.70 | 0.00 | 38.71 | 4.24 |
2327 | 2605 | 1.755179 | ACTATGAATTGCCGCTGCTT | 58.245 | 45.000 | 0.70 | 0.00 | 38.71 | 3.91 |
2328 | 2606 | 2.094675 | ACTATGAATTGCCGCTGCTTT | 58.905 | 42.857 | 0.70 | 0.00 | 38.71 | 3.51 |
2332 | 2637 | 2.705730 | TGAATTGCCGCTGCTTTAGTA | 58.294 | 42.857 | 0.70 | 0.00 | 38.71 | 1.82 |
2363 | 4999 | 6.878923 | TCTCTTAAACACAACATCATTCCGAT | 59.121 | 34.615 | 0.00 | 0.00 | 33.27 | 4.18 |
2369 | 5005 | 6.377327 | ACACAACATCATTCCGATAATTCC | 57.623 | 37.500 | 0.00 | 0.00 | 31.20 | 3.01 |
2370 | 5006 | 5.885352 | ACACAACATCATTCCGATAATTCCA | 59.115 | 36.000 | 0.00 | 0.00 | 31.20 | 3.53 |
2371 | 5007 | 6.376864 | ACACAACATCATTCCGATAATTCCAA | 59.623 | 34.615 | 0.00 | 0.00 | 31.20 | 3.53 |
2372 | 5008 | 6.914215 | CACAACATCATTCCGATAATTCCAAG | 59.086 | 38.462 | 0.00 | 0.00 | 31.20 | 3.61 |
2373 | 5009 | 6.603201 | ACAACATCATTCCGATAATTCCAAGT | 59.397 | 34.615 | 0.00 | 0.00 | 31.20 | 3.16 |
2374 | 5010 | 7.122650 | ACAACATCATTCCGATAATTCCAAGTT | 59.877 | 33.333 | 0.00 | 0.00 | 31.20 | 2.66 |
2375 | 5011 | 7.031226 | ACATCATTCCGATAATTCCAAGTTG | 57.969 | 36.000 | 0.00 | 0.00 | 31.20 | 3.16 |
2376 | 5012 | 6.603201 | ACATCATTCCGATAATTCCAAGTTGT | 59.397 | 34.615 | 1.45 | 0.00 | 31.20 | 3.32 |
2377 | 5013 | 6.677781 | TCATTCCGATAATTCCAAGTTGTC | 57.322 | 37.500 | 1.45 | 0.00 | 0.00 | 3.18 |
2378 | 5014 | 5.588648 | TCATTCCGATAATTCCAAGTTGTCC | 59.411 | 40.000 | 1.45 | 0.00 | 0.00 | 4.02 |
2379 | 5015 | 4.561500 | TCCGATAATTCCAAGTTGTCCA | 57.438 | 40.909 | 1.45 | 0.00 | 0.00 | 4.02 |
2380 | 5016 | 4.912586 | TCCGATAATTCCAAGTTGTCCAA | 58.087 | 39.130 | 1.45 | 0.00 | 0.00 | 3.53 |
2381 | 5017 | 4.698304 | TCCGATAATTCCAAGTTGTCCAAC | 59.302 | 41.667 | 1.45 | 1.90 | 41.45 | 3.77 |
2382 | 5018 | 4.457603 | CCGATAATTCCAAGTTGTCCAACA | 59.542 | 41.667 | 12.32 | 0.00 | 43.47 | 3.33 |
2383 | 5019 | 5.125417 | CCGATAATTCCAAGTTGTCCAACAT | 59.875 | 40.000 | 12.32 | 0.00 | 43.47 | 2.71 |
2384 | 5020 | 6.317642 | CCGATAATTCCAAGTTGTCCAACATA | 59.682 | 38.462 | 12.32 | 0.00 | 43.47 | 2.29 |
2385 | 5021 | 7.148154 | CCGATAATTCCAAGTTGTCCAACATAA | 60.148 | 37.037 | 12.32 | 2.03 | 43.47 | 1.90 |
2386 | 5022 | 7.910162 | CGATAATTCCAAGTTGTCCAACATAAG | 59.090 | 37.037 | 12.32 | 0.00 | 43.47 | 1.73 |
2387 | 5023 | 5.982890 | ATTCCAAGTTGTCCAACATAAGG | 57.017 | 39.130 | 12.32 | 8.00 | 43.47 | 2.69 |
2388 | 5024 | 4.447138 | TCCAAGTTGTCCAACATAAGGT | 57.553 | 40.909 | 12.32 | 0.00 | 43.47 | 3.50 |
2389 | 5025 | 4.798882 | TCCAAGTTGTCCAACATAAGGTT | 58.201 | 39.130 | 12.32 | 0.00 | 43.47 | 3.50 |
2402 | 5038 | 5.615925 | ACATAAGGTTGATACTCCCACTC | 57.384 | 43.478 | 0.00 | 0.00 | 0.00 | 3.51 |
2403 | 5039 | 4.099573 | ACATAAGGTTGATACTCCCACTCG | 59.900 | 45.833 | 0.00 | 0.00 | 0.00 | 4.18 |
2404 | 5040 | 0.824759 | AGGTTGATACTCCCACTCGC | 59.175 | 55.000 | 0.00 | 0.00 | 0.00 | 5.03 |
2405 | 5041 | 0.527817 | GGTTGATACTCCCACTCGCG | 60.528 | 60.000 | 0.00 | 0.00 | 0.00 | 5.87 |
2406 | 5042 | 0.172803 | GTTGATACTCCCACTCGCGT | 59.827 | 55.000 | 5.77 | 0.00 | 0.00 | 6.01 |
2407 | 5043 | 1.402968 | GTTGATACTCCCACTCGCGTA | 59.597 | 52.381 | 5.77 | 0.00 | 0.00 | 4.42 |
2408 | 5044 | 1.977056 | TGATACTCCCACTCGCGTAT | 58.023 | 50.000 | 5.77 | 0.00 | 0.00 | 3.06 |
2409 | 5045 | 1.878088 | TGATACTCCCACTCGCGTATC | 59.122 | 52.381 | 5.77 | 4.04 | 38.94 | 2.24 |
2410 | 5046 | 2.152830 | GATACTCCCACTCGCGTATCT | 58.847 | 52.381 | 5.77 | 0.00 | 36.76 | 1.98 |
2411 | 5047 | 2.048444 | TACTCCCACTCGCGTATCTT | 57.952 | 50.000 | 5.77 | 0.00 | 0.00 | 2.40 |
2412 | 5048 | 2.048444 | ACTCCCACTCGCGTATCTTA | 57.952 | 50.000 | 5.77 | 0.00 | 0.00 | 2.10 |
2413 | 5049 | 2.372264 | ACTCCCACTCGCGTATCTTAA | 58.628 | 47.619 | 5.77 | 0.00 | 0.00 | 1.85 |
2414 | 5050 | 2.756760 | ACTCCCACTCGCGTATCTTAAA | 59.243 | 45.455 | 5.77 | 0.00 | 0.00 | 1.52 |
2415 | 5051 | 3.114065 | CTCCCACTCGCGTATCTTAAAC | 58.886 | 50.000 | 5.77 | 0.00 | 0.00 | 2.01 |
2416 | 5052 | 2.492881 | TCCCACTCGCGTATCTTAAACA | 59.507 | 45.455 | 5.77 | 0.00 | 0.00 | 2.83 |
2417 | 5053 | 2.601763 | CCCACTCGCGTATCTTAAACAC | 59.398 | 50.000 | 5.77 | 0.00 | 0.00 | 3.32 |
2418 | 5054 | 3.247442 | CCACTCGCGTATCTTAAACACA | 58.753 | 45.455 | 5.77 | 0.00 | 0.00 | 3.72 |
2419 | 5055 | 3.676172 | CCACTCGCGTATCTTAAACACAA | 59.324 | 43.478 | 5.77 | 0.00 | 0.00 | 3.33 |
2420 | 5056 | 4.433805 | CCACTCGCGTATCTTAAACACAAC | 60.434 | 45.833 | 5.77 | 0.00 | 0.00 | 3.32 |
2421 | 5057 | 4.149221 | CACTCGCGTATCTTAAACACAACA | 59.851 | 41.667 | 5.77 | 0.00 | 0.00 | 3.33 |
2422 | 5058 | 4.927425 | ACTCGCGTATCTTAAACACAACAT | 59.073 | 37.500 | 5.77 | 0.00 | 0.00 | 2.71 |
2423 | 5059 | 5.061808 | ACTCGCGTATCTTAAACACAACATC | 59.938 | 40.000 | 5.77 | 0.00 | 0.00 | 3.06 |
2424 | 5060 | 4.924462 | TCGCGTATCTTAAACACAACATCA | 59.076 | 37.500 | 5.77 | 0.00 | 0.00 | 3.07 |
2425 | 5061 | 5.579119 | TCGCGTATCTTAAACACAACATCAT | 59.421 | 36.000 | 5.77 | 0.00 | 0.00 | 2.45 |
2426 | 5062 | 6.091577 | TCGCGTATCTTAAACACAACATCATT | 59.908 | 34.615 | 5.77 | 0.00 | 0.00 | 2.57 |
2427 | 5063 | 6.408039 | CGCGTATCTTAAACACAACATCATTC | 59.592 | 38.462 | 0.00 | 0.00 | 0.00 | 2.67 |
2428 | 5064 | 6.687105 | GCGTATCTTAAACACAACATCATTCC | 59.313 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2429 | 5065 | 6.899771 | CGTATCTTAAACACAACATCATTCCG | 59.100 | 38.462 | 0.00 | 0.00 | 0.00 | 4.30 |
2430 | 5066 | 7.201487 | CGTATCTTAAACACAACATCATTCCGA | 60.201 | 37.037 | 0.00 | 0.00 | 0.00 | 4.55 |
2431 | 5067 | 6.236017 | TCTTAAACACAACATCATTCCGAC | 57.764 | 37.500 | 0.00 | 0.00 | 0.00 | 4.79 |
2432 | 5068 | 5.760743 | TCTTAAACACAACATCATTCCGACA | 59.239 | 36.000 | 0.00 | 0.00 | 0.00 | 4.35 |
2433 | 5069 | 4.909696 | AAACACAACATCATTCCGACAA | 57.090 | 36.364 | 0.00 | 0.00 | 0.00 | 3.18 |
2434 | 5070 | 5.452078 | AAACACAACATCATTCCGACAAT | 57.548 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
2435 | 5071 | 5.452078 | AACACAACATCATTCCGACAATT | 57.548 | 34.783 | 0.00 | 0.00 | 0.00 | 2.32 |
2436 | 5072 | 5.046910 | ACACAACATCATTCCGACAATTC | 57.953 | 39.130 | 0.00 | 0.00 | 0.00 | 2.17 |
2449 | 5085 | 5.505780 | TCCGACAATTCCAAGTTATCCAAT | 58.494 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2451 | 5087 | 7.113437 | TCCGACAATTCCAAGTTATCCAATAA | 58.887 | 34.615 | 0.00 | 0.00 | 0.00 | 1.40 |
2456 | 5092 | 9.100197 | ACAATTCCAAGTTATCCAATAAAAGGT | 57.900 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
2469 | 5105 | 5.949354 | CCAATAAAAGGTTGATACTCCCACA | 59.051 | 40.000 | 0.00 | 0.00 | 0.00 | 4.17 |
2470 | 5106 | 6.607198 | CCAATAAAAGGTTGATACTCCCACAT | 59.393 | 38.462 | 0.00 | 0.00 | 0.00 | 3.21 |
2483 | 5121 | 5.994416 | ACTCCCACATGTATTTTATCCCT | 57.006 | 39.130 | 0.00 | 0.00 | 0.00 | 4.20 |
2492 | 5130 | 6.835488 | ACATGTATTTTATCCCTCATGCAACT | 59.165 | 34.615 | 0.00 | 0.00 | 36.96 | 3.16 |
2499 | 5137 | 8.593945 | TTTTATCCCTCATGCAACTAATTTCT | 57.406 | 30.769 | 0.00 | 0.00 | 0.00 | 2.52 |
2501 | 5139 | 8.908786 | TTATCCCTCATGCAACTAATTTCTAG | 57.091 | 34.615 | 0.00 | 0.00 | 0.00 | 2.43 |
2576 | 5214 | 1.200020 | GCCATAGCAAGCACGAAAACT | 59.800 | 47.619 | 0.00 | 0.00 | 39.53 | 2.66 |
2598 | 5236 | 7.093322 | ACTGGCAAAGAGAAATATGTGATTC | 57.907 | 36.000 | 0.00 | 0.00 | 0.00 | 2.52 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 3.650070 | TGCAATGCACGTTAATTTGGA | 57.350 | 38.095 | 2.72 | 0.00 | 31.71 | 3.53 |
12 | 13 | 1.876156 | TCAATGTGTACGTGCAATGCA | 59.124 | 42.857 | 8.25 | 2.72 | 35.60 | 3.96 |
13 | 14 | 2.095768 | AGTCAATGTGTACGTGCAATGC | 60.096 | 45.455 | 8.25 | 0.00 | 0.00 | 3.56 |
14 | 15 | 3.811722 | AGTCAATGTGTACGTGCAATG | 57.188 | 42.857 | 8.25 | 8.35 | 0.00 | 2.82 |
15 | 16 | 4.566004 | ACTAGTCAATGTGTACGTGCAAT | 58.434 | 39.130 | 8.25 | 1.77 | 0.00 | 3.56 |
16 | 17 | 3.985008 | ACTAGTCAATGTGTACGTGCAA | 58.015 | 40.909 | 8.25 | 0.00 | 0.00 | 4.08 |
17 | 18 | 3.653539 | ACTAGTCAATGTGTACGTGCA | 57.346 | 42.857 | 0.82 | 0.82 | 0.00 | 4.57 |
48 | 49 | 9.739276 | TCTCTTTCAACACAATATAAACAGGAT | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 3.24 |
116 | 119 | 9.930158 | AATGTAAAATAGAGTGGGCCTTTATAA | 57.070 | 29.630 | 4.53 | 0.00 | 0.00 | 0.98 |
117 | 120 | 9.930158 | AAATGTAAAATAGAGTGGGCCTTTATA | 57.070 | 29.630 | 4.53 | 0.00 | 0.00 | 0.98 |
118 | 121 | 8.838649 | AAATGTAAAATAGAGTGGGCCTTTAT | 57.161 | 30.769 | 4.53 | 0.00 | 0.00 | 1.40 |
119 | 122 | 9.403583 | CTAAATGTAAAATAGAGTGGGCCTTTA | 57.596 | 33.333 | 4.53 | 0.00 | 0.00 | 1.85 |
120 | 123 | 8.113462 | TCTAAATGTAAAATAGAGTGGGCCTTT | 58.887 | 33.333 | 4.53 | 0.00 | 0.00 | 3.11 |
121 | 124 | 7.639378 | TCTAAATGTAAAATAGAGTGGGCCTT | 58.361 | 34.615 | 4.53 | 0.00 | 0.00 | 4.35 |
122 | 125 | 7.208064 | TCTAAATGTAAAATAGAGTGGGCCT | 57.792 | 36.000 | 4.53 | 0.00 | 0.00 | 5.19 |
123 | 126 | 7.875327 | TTCTAAATGTAAAATAGAGTGGGCC | 57.125 | 36.000 | 0.00 | 0.00 | 0.00 | 5.80 |
124 | 127 | 8.957466 | AGTTTCTAAATGTAAAATAGAGTGGGC | 58.043 | 33.333 | 0.00 | 0.00 | 0.00 | 5.36 |
141 | 144 | 9.688592 | CTCTAGACTACCGAAAAAGTTTCTAAA | 57.311 | 33.333 | 0.00 | 0.00 | 0.00 | 1.85 |
142 | 145 | 9.071276 | TCTCTAGACTACCGAAAAAGTTTCTAA | 57.929 | 33.333 | 0.00 | 0.00 | 0.00 | 2.10 |
183 | 188 | 2.785562 | ACAAGCGTCTCTAGACTCTGT | 58.214 | 47.619 | 8.41 | 5.86 | 38.98 | 3.41 |
187 | 192 | 2.159544 | GCGTAACAAGCGTCTCTAGACT | 60.160 | 50.000 | 8.41 | 0.00 | 42.66 | 3.24 |
198 | 203 | 0.165944 | ATCTTGCACGCGTAACAAGC | 59.834 | 50.000 | 33.03 | 24.27 | 40.45 | 4.01 |
277 | 282 | 3.067106 | GTCTGGATGCAACGGGTATATG | 58.933 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
303 | 308 | 3.749665 | TTTGTTTCTTGCTTGGATGGG | 57.250 | 42.857 | 0.00 | 0.00 | 0.00 | 4.00 |
391 | 396 | 3.411446 | TCGAGATTTTGTGGTTCATGCT | 58.589 | 40.909 | 0.00 | 0.00 | 0.00 | 3.79 |
411 | 416 | 0.391263 | AACGCCGGTCCAAGATCTTC | 60.391 | 55.000 | 4.57 | 0.00 | 0.00 | 2.87 |
425 | 430 | 4.201705 | CCATGCATGTGAAATTTTAACGCC | 60.202 | 41.667 | 24.58 | 0.00 | 0.00 | 5.68 |
450 | 456 | 2.638330 | ATATCGGGTTCGGGTGCGTG | 62.638 | 60.000 | 0.00 | 0.00 | 36.95 | 5.34 |
451 | 457 | 2.359570 | GATATCGGGTTCGGGTGCGT | 62.360 | 60.000 | 0.00 | 0.00 | 36.95 | 5.24 |
452 | 458 | 1.663702 | GATATCGGGTTCGGGTGCG | 60.664 | 63.158 | 0.00 | 0.00 | 36.95 | 5.34 |
453 | 459 | 0.319641 | GAGATATCGGGTTCGGGTGC | 60.320 | 60.000 | 0.00 | 0.00 | 36.95 | 5.01 |
454 | 460 | 0.039437 | CGAGATATCGGGTTCGGGTG | 60.039 | 60.000 | 0.73 | 0.00 | 36.95 | 4.61 |
455 | 461 | 0.466922 | ACGAGATATCGGGTTCGGGT | 60.467 | 55.000 | 15.07 | 0.00 | 37.38 | 5.28 |
456 | 462 | 0.672342 | AACGAGATATCGGGTTCGGG | 59.328 | 55.000 | 15.07 | 0.00 | 37.38 | 5.14 |
457 | 463 | 2.503920 | AAACGAGATATCGGGTTCGG | 57.496 | 50.000 | 15.07 | 0.63 | 37.38 | 4.30 |
458 | 464 | 2.034001 | GCAAAACGAGATATCGGGTTCG | 60.034 | 50.000 | 15.07 | 11.31 | 38.88 | 3.95 |
459 | 465 | 2.933906 | TGCAAAACGAGATATCGGGTTC | 59.066 | 45.455 | 15.07 | 0.00 | 37.45 | 3.62 |
460 | 466 | 2.980568 | TGCAAAACGAGATATCGGGTT | 58.019 | 42.857 | 15.07 | 4.94 | 37.45 | 4.11 |
508 | 518 | 0.321653 | CCTCGGGAAGTTTGTGGAGG | 60.322 | 60.000 | 0.00 | 0.00 | 35.56 | 4.30 |
669 | 679 | 3.627732 | ACGATGAGATGGATACGTGAC | 57.372 | 47.619 | 0.00 | 0.00 | 42.51 | 3.67 |
674 | 684 | 6.480320 | AGCTGTTTTTACGATGAGATGGATAC | 59.520 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
851 | 861 | 0.738975 | CGATCGAGCTAGGGTTCACA | 59.261 | 55.000 | 10.26 | 0.00 | 0.00 | 3.58 |
867 | 877 | 3.804325 | CGTGAGTGATATTCTTTGGCGAT | 59.196 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
1643 | 1669 | 2.213499 | ACGAACTTTGCTGAGAACTGG | 58.787 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1822 | 1855 | 6.978659 | GGTTGTGTACATCAATCGAGATAGAA | 59.021 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
1882 | 2160 | 1.968704 | TGTTCGTGTGGCCATGTTTA | 58.031 | 45.000 | 9.72 | 0.00 | 0.00 | 2.01 |
1887 | 2165 | 2.264005 | TAACTTGTTCGTGTGGCCAT | 57.736 | 45.000 | 9.72 | 0.00 | 0.00 | 4.40 |
1888 | 2166 | 2.264005 | ATAACTTGTTCGTGTGGCCA | 57.736 | 45.000 | 0.00 | 0.00 | 0.00 | 5.36 |
1917 | 2195 | 3.508762 | AGTAACGCACCAGAGATTTACG | 58.491 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
1928 | 2206 | 4.377897 | AGCAATAGGATTAGTAACGCACC | 58.622 | 43.478 | 0.00 | 0.00 | 0.00 | 5.01 |
1961 | 2239 | 4.950434 | GGGTTTTATTCGACCGATTTGA | 57.050 | 40.909 | 0.00 | 0.00 | 36.78 | 2.69 |
1968 | 2246 | 2.158254 | GTCACACGGGTTTTATTCGACC | 59.842 | 50.000 | 0.00 | 0.00 | 35.14 | 4.79 |
1971 | 2249 | 2.803956 | ACTGTCACACGGGTTTTATTCG | 59.196 | 45.455 | 0.00 | 0.00 | 0.00 | 3.34 |
1990 | 2268 | 4.721776 | TCTAGATGCAACTATTTGGGGACT | 59.278 | 41.667 | 3.95 | 0.00 | 32.81 | 3.85 |
1991 | 2269 | 5.036117 | TCTAGATGCAACTATTTGGGGAC | 57.964 | 43.478 | 3.95 | 0.00 | 32.81 | 4.46 |
1994 | 2272 | 5.923204 | AGACTCTAGATGCAACTATTTGGG | 58.077 | 41.667 | 3.95 | 0.00 | 32.81 | 4.12 |
2001 | 2279 | 7.710676 | TTTCTTCTAGACTCTAGATGCAACT | 57.289 | 36.000 | 15.27 | 0.86 | 0.00 | 3.16 |
2003 | 2281 | 8.354711 | TCTTTTCTTCTAGACTCTAGATGCAA | 57.645 | 34.615 | 15.27 | 11.68 | 0.00 | 4.08 |
2004 | 2282 | 7.946381 | TCTTTTCTTCTAGACTCTAGATGCA | 57.054 | 36.000 | 15.27 | 6.86 | 0.00 | 3.96 |
2005 | 2283 | 8.466798 | AGTTCTTTTCTTCTAGACTCTAGATGC | 58.533 | 37.037 | 15.27 | 5.07 | 0.00 | 3.91 |
2007 | 2285 | 9.185680 | GGAGTTCTTTTCTTCTAGACTCTAGAT | 57.814 | 37.037 | 15.27 | 0.00 | 0.00 | 1.98 |
2008 | 2286 | 8.387813 | AGGAGTTCTTTTCTTCTAGACTCTAGA | 58.612 | 37.037 | 11.23 | 11.23 | 0.00 | 2.43 |
2009 | 2287 | 8.458843 | CAGGAGTTCTTTTCTTCTAGACTCTAG | 58.541 | 40.741 | 6.74 | 6.74 | 0.00 | 2.43 |
2010 | 2288 | 8.164733 | TCAGGAGTTCTTTTCTTCTAGACTCTA | 58.835 | 37.037 | 0.00 | 0.00 | 0.00 | 2.43 |
2011 | 2289 | 7.007723 | TCAGGAGTTCTTTTCTTCTAGACTCT | 58.992 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
2012 | 2290 | 7.222000 | TCAGGAGTTCTTTTCTTCTAGACTC | 57.778 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2013 | 2291 | 6.295067 | GCTCAGGAGTTCTTTTCTTCTAGACT | 60.295 | 42.308 | 0.00 | 0.00 | 0.00 | 3.24 |
2014 | 2292 | 5.867174 | GCTCAGGAGTTCTTTTCTTCTAGAC | 59.133 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
2015 | 2293 | 5.540337 | TGCTCAGGAGTTCTTTTCTTCTAGA | 59.460 | 40.000 | 0.00 | 0.00 | 0.00 | 2.43 |
2016 | 2294 | 5.788450 | TGCTCAGGAGTTCTTTTCTTCTAG | 58.212 | 41.667 | 0.00 | 0.00 | 0.00 | 2.43 |
2017 | 2295 | 5.808366 | TGCTCAGGAGTTCTTTTCTTCTA | 57.192 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
2033 | 2311 | 1.662629 | CTTTAGCGTGTGGATGCTCAG | 59.337 | 52.381 | 0.00 | 0.00 | 43.77 | 3.35 |
2057 | 2335 | 4.915667 | CCAATATAGATACGTGTGTGGTCG | 59.084 | 45.833 | 0.00 | 0.00 | 0.00 | 4.79 |
2061 | 2339 | 6.643770 | GGTTACCCAATATAGATACGTGTGTG | 59.356 | 42.308 | 0.00 | 0.00 | 0.00 | 3.82 |
2062 | 2340 | 6.324512 | TGGTTACCCAATATAGATACGTGTGT | 59.675 | 38.462 | 0.00 | 0.00 | 37.98 | 3.72 |
2064 | 2342 | 6.982160 | TGGTTACCCAATATAGATACGTGT | 57.018 | 37.500 | 0.00 | 0.00 | 37.98 | 4.49 |
2068 | 2346 | 7.913789 | TCCACATGGTTACCCAATATAGATAC | 58.086 | 38.462 | 0.00 | 0.00 | 46.04 | 2.24 |
2070 | 2348 | 7.588866 | ATCCACATGGTTACCCAATATAGAT | 57.411 | 36.000 | 0.00 | 0.00 | 46.04 | 1.98 |
2071 | 2349 | 8.513139 | TTATCCACATGGTTACCCAATATAGA | 57.487 | 34.615 | 0.00 | 0.00 | 46.04 | 1.98 |
2129 | 2407 | 9.396022 | AGTCACTTGTTGAAATTTCTAGAAAGA | 57.604 | 29.630 | 21.75 | 15.31 | 35.39 | 2.52 |
2132 | 2410 | 9.607988 | TGTAGTCACTTGTTGAAATTTCTAGAA | 57.392 | 29.630 | 18.64 | 14.37 | 35.39 | 2.10 |
2133 | 2411 | 9.778741 | ATGTAGTCACTTGTTGAAATTTCTAGA | 57.221 | 29.630 | 18.64 | 7.52 | 35.39 | 2.43 |
2134 | 2412 | 9.817365 | CATGTAGTCACTTGTTGAAATTTCTAG | 57.183 | 33.333 | 18.64 | 12.38 | 35.39 | 2.43 |
2135 | 2413 | 8.289618 | GCATGTAGTCACTTGTTGAAATTTCTA | 58.710 | 33.333 | 18.64 | 8.95 | 35.39 | 2.10 |
2136 | 2414 | 7.141363 | GCATGTAGTCACTTGTTGAAATTTCT | 58.859 | 34.615 | 18.64 | 0.00 | 35.39 | 2.52 |
2137 | 2415 | 6.917477 | TGCATGTAGTCACTTGTTGAAATTTC | 59.083 | 34.615 | 11.41 | 11.41 | 35.39 | 2.17 |
2138 | 2416 | 6.804677 | TGCATGTAGTCACTTGTTGAAATTT | 58.195 | 32.000 | 0.00 | 0.00 | 35.39 | 1.82 |
2139 | 2417 | 6.262944 | TCTGCATGTAGTCACTTGTTGAAATT | 59.737 | 34.615 | 10.80 | 0.00 | 35.39 | 1.82 |
2140 | 2418 | 5.764686 | TCTGCATGTAGTCACTTGTTGAAAT | 59.235 | 36.000 | 10.80 | 0.00 | 35.39 | 2.17 |
2141 | 2419 | 5.122519 | TCTGCATGTAGTCACTTGTTGAAA | 58.877 | 37.500 | 10.80 | 0.00 | 35.39 | 2.69 |
2142 | 2420 | 4.702831 | TCTGCATGTAGTCACTTGTTGAA | 58.297 | 39.130 | 10.80 | 0.00 | 35.39 | 2.69 |
2143 | 2421 | 4.309933 | CTCTGCATGTAGTCACTTGTTGA | 58.690 | 43.478 | 10.80 | 0.00 | 33.46 | 3.18 |
2144 | 2422 | 3.120408 | GCTCTGCATGTAGTCACTTGTTG | 60.120 | 47.826 | 10.80 | 0.00 | 33.46 | 3.33 |
2145 | 2423 | 3.070018 | GCTCTGCATGTAGTCACTTGTT | 58.930 | 45.455 | 10.80 | 0.00 | 33.46 | 2.83 |
2146 | 2424 | 2.037641 | TGCTCTGCATGTAGTCACTTGT | 59.962 | 45.455 | 10.80 | 0.00 | 31.71 | 3.16 |
2147 | 2425 | 2.691927 | TGCTCTGCATGTAGTCACTTG | 58.308 | 47.619 | 10.80 | 0.00 | 31.71 | 3.16 |
2148 | 2426 | 3.407424 | TTGCTCTGCATGTAGTCACTT | 57.593 | 42.857 | 10.80 | 0.00 | 38.76 | 3.16 |
2149 | 2427 | 3.407424 | TTTGCTCTGCATGTAGTCACT | 57.593 | 42.857 | 10.80 | 0.00 | 38.76 | 3.41 |
2150 | 2428 | 4.154737 | TCATTTTGCTCTGCATGTAGTCAC | 59.845 | 41.667 | 10.80 | 2.57 | 38.76 | 3.67 |
2151 | 2429 | 4.325972 | TCATTTTGCTCTGCATGTAGTCA | 58.674 | 39.130 | 10.80 | 7.44 | 38.76 | 3.41 |
2152 | 2430 | 4.394300 | ACTCATTTTGCTCTGCATGTAGTC | 59.606 | 41.667 | 10.80 | 5.00 | 38.76 | 2.59 |
2153 | 2431 | 4.155462 | CACTCATTTTGCTCTGCATGTAGT | 59.845 | 41.667 | 10.80 | 0.00 | 38.76 | 2.73 |
2154 | 2432 | 4.393990 | TCACTCATTTTGCTCTGCATGTAG | 59.606 | 41.667 | 4.14 | 4.14 | 38.76 | 2.74 |
2155 | 2433 | 4.325972 | TCACTCATTTTGCTCTGCATGTA | 58.674 | 39.130 | 0.00 | 0.00 | 38.76 | 2.29 |
2156 | 2434 | 3.151554 | TCACTCATTTTGCTCTGCATGT | 58.848 | 40.909 | 0.00 | 0.00 | 38.76 | 3.21 |
2157 | 2435 | 3.842732 | TCACTCATTTTGCTCTGCATG | 57.157 | 42.857 | 0.00 | 0.00 | 38.76 | 4.06 |
2158 | 2436 | 4.438336 | CGATTCACTCATTTTGCTCTGCAT | 60.438 | 41.667 | 0.00 | 0.00 | 38.76 | 3.96 |
2159 | 2437 | 3.120095 | CGATTCACTCATTTTGCTCTGCA | 60.120 | 43.478 | 0.00 | 0.00 | 36.47 | 4.41 |
2160 | 2438 | 3.125829 | TCGATTCACTCATTTTGCTCTGC | 59.874 | 43.478 | 0.00 | 0.00 | 0.00 | 4.26 |
2161 | 2439 | 4.152938 | TGTCGATTCACTCATTTTGCTCTG | 59.847 | 41.667 | 0.00 | 0.00 | 0.00 | 3.35 |
2162 | 2440 | 4.153117 | GTGTCGATTCACTCATTTTGCTCT | 59.847 | 41.667 | 0.00 | 0.00 | 35.68 | 4.09 |
2163 | 2441 | 4.398247 | GTGTCGATTCACTCATTTTGCTC | 58.602 | 43.478 | 0.00 | 0.00 | 35.68 | 4.26 |
2164 | 2442 | 3.189287 | GGTGTCGATTCACTCATTTTGCT | 59.811 | 43.478 | 6.18 | 0.00 | 38.28 | 3.91 |
2165 | 2443 | 3.492313 | GGTGTCGATTCACTCATTTTGC | 58.508 | 45.455 | 6.18 | 0.00 | 38.28 | 3.68 |
2166 | 2444 | 3.753272 | AGGGTGTCGATTCACTCATTTTG | 59.247 | 43.478 | 8.58 | 0.00 | 40.86 | 2.44 |
2167 | 2445 | 4.021102 | AGGGTGTCGATTCACTCATTTT | 57.979 | 40.909 | 8.58 | 0.00 | 40.86 | 1.82 |
2168 | 2446 | 3.703001 | AGGGTGTCGATTCACTCATTT | 57.297 | 42.857 | 8.58 | 0.00 | 40.86 | 2.32 |
2169 | 2447 | 4.819105 | TTAGGGTGTCGATTCACTCATT | 57.181 | 40.909 | 8.58 | 0.00 | 40.86 | 2.57 |
2170 | 2448 | 4.819105 | TTTAGGGTGTCGATTCACTCAT | 57.181 | 40.909 | 8.58 | 0.00 | 40.86 | 2.90 |
2171 | 2449 | 4.610605 | TTTTAGGGTGTCGATTCACTCA | 57.389 | 40.909 | 8.58 | 0.00 | 40.86 | 3.41 |
2172 | 2450 | 6.761714 | ACATATTTTAGGGTGTCGATTCACTC | 59.238 | 38.462 | 6.18 | 2.26 | 38.92 | 3.51 |
2173 | 2451 | 6.650120 | ACATATTTTAGGGTGTCGATTCACT | 58.350 | 36.000 | 6.18 | 3.40 | 38.28 | 3.41 |
2174 | 2452 | 6.920569 | ACATATTTTAGGGTGTCGATTCAC | 57.079 | 37.500 | 0.00 | 0.00 | 37.57 | 3.18 |
2241 | 2519 | 9.449719 | ACTTCATCCGTTTCTAAATATTTGTCT | 57.550 | 29.630 | 11.05 | 0.00 | 0.00 | 3.41 |
2251 | 2529 | 9.582431 | CATAAGAAGTACTTCATCCGTTTCTAA | 57.418 | 33.333 | 31.80 | 7.38 | 41.84 | 2.10 |
2252 | 2530 | 8.963725 | TCATAAGAAGTACTTCATCCGTTTCTA | 58.036 | 33.333 | 31.80 | 8.03 | 41.84 | 2.10 |
2253 | 2531 | 7.837863 | TCATAAGAAGTACTTCATCCGTTTCT | 58.162 | 34.615 | 31.80 | 9.87 | 41.84 | 2.52 |
2254 | 2532 | 8.649973 | ATCATAAGAAGTACTTCATCCGTTTC | 57.350 | 34.615 | 31.80 | 7.74 | 41.84 | 2.78 |
2255 | 2533 | 7.711339 | GGATCATAAGAAGTACTTCATCCGTTT | 59.289 | 37.037 | 31.80 | 20.19 | 41.84 | 3.60 |
2256 | 2534 | 7.147724 | TGGATCATAAGAAGTACTTCATCCGTT | 60.148 | 37.037 | 31.80 | 20.79 | 39.62 | 4.44 |
2257 | 2535 | 6.323996 | TGGATCATAAGAAGTACTTCATCCGT | 59.676 | 38.462 | 31.80 | 16.05 | 39.62 | 4.69 |
2258 | 2536 | 6.749139 | TGGATCATAAGAAGTACTTCATCCG | 58.251 | 40.000 | 31.80 | 19.33 | 39.62 | 4.18 |
2272 | 2550 | 9.350357 | GCAACTGCAATTAATATGGATCATAAG | 57.650 | 33.333 | 0.00 | 0.00 | 41.59 | 1.73 |
2273 | 2551 | 9.081204 | AGCAACTGCAATTAATATGGATCATAA | 57.919 | 29.630 | 4.22 | 0.00 | 45.16 | 1.90 |
2274 | 2552 | 8.640063 | AGCAACTGCAATTAATATGGATCATA | 57.360 | 30.769 | 4.22 | 0.00 | 45.16 | 2.15 |
2275 | 2553 | 7.534723 | AGCAACTGCAATTAATATGGATCAT | 57.465 | 32.000 | 4.22 | 0.00 | 45.16 | 2.45 |
2276 | 2554 | 6.964807 | AGCAACTGCAATTAATATGGATCA | 57.035 | 33.333 | 4.22 | 0.00 | 45.16 | 2.92 |
2293 | 2571 | 7.575720 | GCAATTCATAGTTCCACTAAAGCAACT | 60.576 | 37.037 | 0.00 | 0.00 | 33.89 | 3.16 |
2295 | 2573 | 6.350110 | GGCAATTCATAGTTCCACTAAAGCAA | 60.350 | 38.462 | 0.00 | 0.00 | 33.89 | 3.91 |
2305 | 2583 | 1.268743 | GCAGCGGCAATTCATAGTTCC | 60.269 | 52.381 | 3.18 | 0.00 | 40.72 | 3.62 |
2306 | 2584 | 1.672881 | AGCAGCGGCAATTCATAGTTC | 59.327 | 47.619 | 12.44 | 0.00 | 44.61 | 3.01 |
2308 | 2586 | 1.755179 | AAGCAGCGGCAATTCATAGT | 58.245 | 45.000 | 12.44 | 0.00 | 44.61 | 2.12 |
2309 | 2587 | 2.857592 | AAAGCAGCGGCAATTCATAG | 57.142 | 45.000 | 12.44 | 0.00 | 44.61 | 2.23 |
2311 | 2589 | 2.094675 | ACTAAAGCAGCGGCAATTCAT | 58.905 | 42.857 | 12.44 | 0.00 | 44.61 | 2.57 |
2313 | 2591 | 2.678336 | AGTACTAAAGCAGCGGCAATTC | 59.322 | 45.455 | 12.44 | 0.00 | 44.61 | 2.17 |
2314 | 2592 | 2.711542 | AGTACTAAAGCAGCGGCAATT | 58.288 | 42.857 | 12.44 | 8.32 | 44.61 | 2.32 |
2315 | 2593 | 2.403252 | AGTACTAAAGCAGCGGCAAT | 57.597 | 45.000 | 12.44 | 1.25 | 44.61 | 3.56 |
2316 | 2594 | 2.997986 | GTTAGTACTAAAGCAGCGGCAA | 59.002 | 45.455 | 16.82 | 0.00 | 44.61 | 4.52 |
2317 | 2595 | 2.232941 | AGTTAGTACTAAAGCAGCGGCA | 59.767 | 45.455 | 16.82 | 0.00 | 36.01 | 5.69 |
2318 | 2596 | 2.858941 | GAGTTAGTACTAAAGCAGCGGC | 59.141 | 50.000 | 16.82 | 0.00 | 35.79 | 6.53 |
2319 | 2597 | 4.096682 | AGAGAGTTAGTACTAAAGCAGCGG | 59.903 | 45.833 | 16.82 | 0.00 | 33.84 | 5.52 |
2321 | 2599 | 8.862074 | GTTTAAGAGAGTTAGTACTAAAGCAGC | 58.138 | 37.037 | 16.82 | 4.65 | 33.84 | 5.25 |
2322 | 2600 | 9.909644 | TGTTTAAGAGAGTTAGTACTAAAGCAG | 57.090 | 33.333 | 16.82 | 0.00 | 33.84 | 4.24 |
2323 | 2601 | 9.688592 | GTGTTTAAGAGAGTTAGTACTAAAGCA | 57.311 | 33.333 | 16.82 | 4.77 | 33.84 | 3.91 |
2332 | 2637 | 9.561069 | AATGATGTTGTGTTTAAGAGAGTTAGT | 57.439 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2363 | 4999 | 7.007723 | ACCTTATGTTGGACAACTTGGAATTA | 58.992 | 34.615 | 15.37 | 0.00 | 41.67 | 1.40 |
2379 | 5015 | 5.395324 | CGAGTGGGAGTATCAACCTTATGTT | 60.395 | 44.000 | 0.00 | 0.00 | 36.25 | 2.71 |
2380 | 5016 | 4.099573 | CGAGTGGGAGTATCAACCTTATGT | 59.900 | 45.833 | 0.00 | 0.00 | 36.25 | 2.29 |
2381 | 5017 | 4.621991 | CGAGTGGGAGTATCAACCTTATG | 58.378 | 47.826 | 0.00 | 0.00 | 36.25 | 1.90 |
2382 | 5018 | 3.069729 | GCGAGTGGGAGTATCAACCTTAT | 59.930 | 47.826 | 0.00 | 0.00 | 36.25 | 1.73 |
2383 | 5019 | 2.429610 | GCGAGTGGGAGTATCAACCTTA | 59.570 | 50.000 | 0.00 | 0.00 | 36.25 | 2.69 |
2384 | 5020 | 1.207329 | GCGAGTGGGAGTATCAACCTT | 59.793 | 52.381 | 0.00 | 0.00 | 36.25 | 3.50 |
2385 | 5021 | 0.824759 | GCGAGTGGGAGTATCAACCT | 59.175 | 55.000 | 0.00 | 0.00 | 36.25 | 3.50 |
2386 | 5022 | 0.527817 | CGCGAGTGGGAGTATCAACC | 60.528 | 60.000 | 0.00 | 0.00 | 36.25 | 3.77 |
2387 | 5023 | 0.172803 | ACGCGAGTGGGAGTATCAAC | 59.827 | 55.000 | 15.93 | 0.00 | 46.97 | 3.18 |
2388 | 5024 | 2.575108 | ACGCGAGTGGGAGTATCAA | 58.425 | 52.632 | 15.93 | 0.00 | 46.97 | 2.57 |
2389 | 5025 | 2.486727 | AGATACGCGAGTGGGAGTATCA | 60.487 | 50.000 | 15.93 | 0.00 | 46.02 | 2.15 |
2400 | 5036 | 4.896562 | TGTTGTGTTTAAGATACGCGAG | 57.103 | 40.909 | 15.93 | 0.00 | 0.00 | 5.03 |
2401 | 5037 | 4.924462 | TGATGTTGTGTTTAAGATACGCGA | 59.076 | 37.500 | 15.93 | 0.00 | 0.00 | 5.87 |
2402 | 5038 | 5.198116 | TGATGTTGTGTTTAAGATACGCG | 57.802 | 39.130 | 3.53 | 3.53 | 0.00 | 6.01 |
2403 | 5039 | 6.687105 | GGAATGATGTTGTGTTTAAGATACGC | 59.313 | 38.462 | 0.00 | 0.00 | 0.00 | 4.42 |
2404 | 5040 | 6.899771 | CGGAATGATGTTGTGTTTAAGATACG | 59.100 | 38.462 | 0.00 | 0.00 | 0.00 | 3.06 |
2405 | 5041 | 7.903431 | GTCGGAATGATGTTGTGTTTAAGATAC | 59.097 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2406 | 5042 | 7.604545 | TGTCGGAATGATGTTGTGTTTAAGATA | 59.395 | 33.333 | 0.00 | 0.00 | 0.00 | 1.98 |
2407 | 5043 | 6.429692 | TGTCGGAATGATGTTGTGTTTAAGAT | 59.570 | 34.615 | 0.00 | 0.00 | 0.00 | 2.40 |
2408 | 5044 | 5.760743 | TGTCGGAATGATGTTGTGTTTAAGA | 59.239 | 36.000 | 0.00 | 0.00 | 0.00 | 2.10 |
2409 | 5045 | 5.996219 | TGTCGGAATGATGTTGTGTTTAAG | 58.004 | 37.500 | 0.00 | 0.00 | 0.00 | 1.85 |
2410 | 5046 | 6.378710 | TTGTCGGAATGATGTTGTGTTTAA | 57.621 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
2411 | 5047 | 6.567687 | ATTGTCGGAATGATGTTGTGTTTA | 57.432 | 33.333 | 0.00 | 0.00 | 0.00 | 2.01 |
2412 | 5048 | 4.909696 | TTGTCGGAATGATGTTGTGTTT | 57.090 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
2413 | 5049 | 5.452078 | AATTGTCGGAATGATGTTGTGTT | 57.548 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
2414 | 5050 | 4.082787 | GGAATTGTCGGAATGATGTTGTGT | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.72 |
2415 | 5051 | 4.082841 | TGGAATTGTCGGAATGATGTTGTG | 60.083 | 41.667 | 0.00 | 0.00 | 0.00 | 3.33 |
2416 | 5052 | 4.078537 | TGGAATTGTCGGAATGATGTTGT | 58.921 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
2417 | 5053 | 4.700268 | TGGAATTGTCGGAATGATGTTG | 57.300 | 40.909 | 0.00 | 0.00 | 0.00 | 3.33 |
2418 | 5054 | 4.766891 | ACTTGGAATTGTCGGAATGATGTT | 59.233 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
2419 | 5055 | 4.335416 | ACTTGGAATTGTCGGAATGATGT | 58.665 | 39.130 | 0.00 | 0.00 | 0.00 | 3.06 |
2420 | 5056 | 4.970662 | ACTTGGAATTGTCGGAATGATG | 57.029 | 40.909 | 0.00 | 0.00 | 0.00 | 3.07 |
2421 | 5057 | 6.263168 | GGATAACTTGGAATTGTCGGAATGAT | 59.737 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
2422 | 5058 | 5.588648 | GGATAACTTGGAATTGTCGGAATGA | 59.411 | 40.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2423 | 5059 | 5.356751 | TGGATAACTTGGAATTGTCGGAATG | 59.643 | 40.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2424 | 5060 | 5.505780 | TGGATAACTTGGAATTGTCGGAAT | 58.494 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
2425 | 5061 | 4.912586 | TGGATAACTTGGAATTGTCGGAA | 58.087 | 39.130 | 0.00 | 0.00 | 0.00 | 4.30 |
2426 | 5062 | 4.561500 | TGGATAACTTGGAATTGTCGGA | 57.438 | 40.909 | 0.00 | 0.00 | 0.00 | 4.55 |
2427 | 5063 | 5.835113 | ATTGGATAACTTGGAATTGTCGG | 57.165 | 39.130 | 0.00 | 0.00 | 0.00 | 4.79 |
2428 | 5064 | 9.289303 | CTTTTATTGGATAACTTGGAATTGTCG | 57.711 | 33.333 | 0.00 | 0.00 | 0.00 | 4.35 |
2429 | 5065 | 9.586435 | CCTTTTATTGGATAACTTGGAATTGTC | 57.414 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2430 | 5066 | 9.100197 | ACCTTTTATTGGATAACTTGGAATTGT | 57.900 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
2431 | 5067 | 9.942850 | AACCTTTTATTGGATAACTTGGAATTG | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 2.32 |
2432 | 5068 | 9.942850 | CAACCTTTTATTGGATAACTTGGAATT | 57.057 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
2433 | 5069 | 9.320295 | TCAACCTTTTATTGGATAACTTGGAAT | 57.680 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
2434 | 5070 | 8.713708 | TCAACCTTTTATTGGATAACTTGGAA | 57.286 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
2435 | 5071 | 8.893563 | ATCAACCTTTTATTGGATAACTTGGA | 57.106 | 30.769 | 0.00 | 0.00 | 0.00 | 3.53 |
2449 | 5085 | 6.134535 | ACATGTGGGAGTATCAACCTTTTA | 57.865 | 37.500 | 0.00 | 0.00 | 36.25 | 1.52 |
2451 | 5087 | 4.657814 | ACATGTGGGAGTATCAACCTTT | 57.342 | 40.909 | 0.00 | 0.00 | 36.25 | 3.11 |
2456 | 5092 | 7.942341 | GGGATAAAATACATGTGGGAGTATCAA | 59.058 | 37.037 | 9.11 | 0.00 | 36.25 | 2.57 |
2469 | 5105 | 8.995027 | TTAGTTGCATGAGGGATAAAATACAT | 57.005 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2470 | 5106 | 8.995027 | ATTAGTTGCATGAGGGATAAAATACA | 57.005 | 30.769 | 0.00 | 0.00 | 0.00 | 2.29 |
2519 | 5157 | 6.849085 | TGCTTTTAATGTTCCACCACATAT | 57.151 | 33.333 | 0.00 | 0.00 | 36.30 | 1.78 |
2576 | 5214 | 7.649533 | ATGAATCACATATTTCTCTTTGCCA | 57.350 | 32.000 | 0.00 | 0.00 | 37.46 | 4.92 |
2598 | 5236 | 9.628746 | TGATGTTGTTAAGATGATGAAACAATG | 57.371 | 29.630 | 3.16 | 0.00 | 42.07 | 2.82 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.