AutoCloner

Multiple sequence alignment - TraesCS7A01G178100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7A01G178100	chr7A	100.000	2450	0	0	1637	4086	131865579	131863130	0.000000e+00	4525.0
1	TraesCS7A01G178100	chr7A	100.000	1325	0	0	1	1325	131867215	131865891	0.000000e+00	2447.0
2	TraesCS7A01G178100	chr7A	77.711	166	23	12	667	819	563605208	563605044	5.630000e-14	89.8
3	TraesCS7A01G178100	chr7B	91.887	1627	87	23	1637	3242	94579800	94578198	0.000000e+00	2231.0
4	TraesCS7A01G178100	chr7B	82.340	1325	139	52	22	1325	94581045	94579795	0.000000e+00	1062.0
5	TraesCS7A01G178100	chr7B	76.836	177	29	8	634	801	52508128	52508301	5.630000e-14	89.8
6	TraesCS7A01G178100	chr7D	96.834	1074	25	1	1750	2814	133315985	133314912	0.000000e+00	1786.0
7	TraesCS7A01G178100	chr7D	90.623	1365	75	26	1	1325	133317716	133316365	0.000000e+00	1762.0
8	TraesCS7A01G178100	chr7D	93.101	1203	62	8	2898	4086	133314589	133313394	0.000000e+00	1742.0
9	TraesCS7A01G178100	chr7D	88.803	259	27	2	2504	2762	157297979	157297723	2.370000e-82	316.0
10	TraesCS7A01G178100	chr7D	88.430	242	28	0	2501	2742	20665919	20666160	3.990000e-75	292.0
11	TraesCS7A01G178100	chr7D	82.121	330	33	9	1699	2028	20665620	20665923	4.050000e-65	259.0
12	TraesCS7A01G178100	chr7D	98.718	78	1	0	1637	1714	133316370	133316293	5.510000e-29	139.0
13	TraesCS7A01G178100	chr7D	97.959	49	1	0	2812	2860	133314645	133314597	7.280000e-13	86.1
14	TraesCS7A01G178100	chr1D	89.439	303	32	0	1807	2109	428202208	428201906	2.300000e-102	383.0
15	TraesCS7A01G178100	chr1D	91.705	217	10	2	2468	2676	428200948	428200732	1.110000e-75	294.0
16	TraesCS7A01G178100	chr2D	90.909	242	22	0	2501	2742	356100553	356100794	3.940000e-85	326.0
17	TraesCS7A01G178100	chr2D	84.639	332	40	5	1697	2028	356100237	356100557	1.830000e-83	320.0
18	TraesCS7A01G178100	chr2D	93.333	45	2	1	189	233	472128463	472128420	9.480000e-07	65.8
19	TraesCS7A01G178100	chr1B	78.191	188	31	6	624	801	362306384	362306571	1.200000e-20	111.0
20	TraesCS7A01G178100	chr1B	76.220	164	32	6	600	759	397408819	397408979	3.390000e-11	80.5
21	TraesCS7A01G178100	chr3B	78.313	166	24	5	666	819	579892944	579892779	3.360000e-16	97.1
22	TraesCS7A01G178100	chr2A	83.333	108	15	2	3963	4067	169400811	169400704	3.360000e-16	97.1
23	TraesCS7A01G178100	chr4A	77.778	162	25	7	666	816	57515862	57515701	5.630000e-14	89.8
24	TraesCS7A01G178100	chr4A	76.687	163	26	6	666	816	607305742	607305904	3.390000e-11	80.5
25	TraesCS7A01G178100	chr3A	75.349	215	37	12	624	823	688895587	688895374	5.630000e-14	89.8
26	TraesCS7A01G178100	chr3A	89.362	47	4	1	175	220	30760344	30760298	1.590000e-04	58.4
27	TraesCS7A01G178100	chr3A	90.909	44	3	1	178	220	53295773	53295730	1.590000e-04	58.4
28	TraesCS7A01G178100	chr5A	75.238	210	38	11	605	804	609289420	609289625	2.020000e-13	87.9
29	TraesCS7A01G178100	chr6B	92.857	56	1	3	178	233	703687709	703687761	1.220000e-10	78.7
30	TraesCS7A01G178100	chr5D	85.000	60	8	1	174	233	238897119	238897061	4.410000e-05	60.2
31	TraesCS7A01G178100	chr5D	96.774	31	1	0	3557	3587	102531373	102531403	7.000000e-03	52.8
32	TraesCS7A01G178100	chr5B	94.737	38	2	0	183	220	24285652	24285689	4.410000e-05	60.2
33	TraesCS7A01G178100	chr5B	94.872	39	1	1	183	220	24776583	24776621	4.410000e-05	60.2
34	TraesCS7A01G178100	chr5B	94.872	39	1	1	183	220	24805367	24805329	4.410000e-05	60.2

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7A01G178100	chr7A	131863130	131867215	4085	True	3486.00	4525	100.0000	1	4086	2	chr7A.!!$R2	4085
1	TraesCS7A01G178100	chr7B	94578198	94581045	2847	True	1646.50	2231	87.1135	22	3242	2	chr7B.!!$R1	3220
2	TraesCS7A01G178100	chr7D	133313394	133317716	4322	True	1103.02	1786	95.4470	1	4086	5	chr7D.!!$R2	4085
3	TraesCS7A01G178100	chr7D	20665620	20666160	540	False	275.50	292	85.2755	1699	2742	2	chr7D.!!$F1	1043
4	TraesCS7A01G178100	chr1D	428200732	428202208	1476	True	338.50	383	90.5720	1807	2676	2	chr1D.!!$R1	869
5	TraesCS7A01G178100	chr2D	356100237	356100794	557	False	323.00	326	87.7740	1697	2742	2	chr2D.!!$F1	1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
854	898	0.390472	ACTAGTGCTTTCGCCAGAGC	60.390	55.000	0.00	39.33	4.09	F
1106	1178	0.107848	ATGTCCAACCCCGAATCGAC	60.108	55.000	3.36	0.00	4.20	F
1862	2206	2.026879	GACCTCATCTCCGCGCTC	59.973	66.667	5.56	0.00	5.03	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
1715	1787	1.376037	GGTGGAGTCCTTGAAGCGG	60.376	63.158	11.33	0.00	5.52	R
1976	2320	3.434319	GTGGCGGTGGCTGTGATG	61.434	66.667	0.00	39.81	3.07	R
3813	5072	0.485099	TAAACCAGCCACACCCCATT	59.515	50.000	0.00	0.00	3.16	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
72	74	2.416836	GCGGCCCCTTTAGATTTTGTTC	60.417	50.000	0.00	0.00	0.00	3.18
221	225	6.373779	CACGAGAAGCACATATTTGTTTCTT	58.626	36.000	18.38	5.06	44.37	2.52
237	241	2.839486	TCTTGATGGAAGCACTCGTT	57.161	45.000	0.00	0.00	0.00	3.85
250	254	2.721090	GCACTCGTTGAAGCACAAATTC	59.279	45.455	0.00	0.00	40.36	2.17
280	284	4.390297	GCGAGAAGCATAGTTGTTCTTCTT	59.610	41.667	5.04	0.00	43.55	2.52
290	294	5.836821	AGTTGTTCTTCTTGAAAGGGAAC	57.163	39.130	15.90	15.90	38.42	3.62
374	379	0.937304	TGCTTCTCGTGAAAGCACAC	59.063	50.000	14.66	0.00	45.41	3.82
406	411	2.912771	TGAGTTGTGCTTCTCGGAAAA	58.087	42.857	0.00	0.00	33.88	2.29
468	476	4.848357	ACTCACAGATGTATTTCTTGGGG	58.152	43.478	0.00	0.00	0.00	4.96
469	477	4.202441	CTCACAGATGTATTTCTTGGGGG	58.798	47.826	0.00	0.00	0.00	5.40
475	483	6.155049	ACAGATGTATTTCTTGGGGGAAAATG	59.845	38.462	0.00	0.00	38.46	2.32
490	498	5.221441	GGGGAAAATGTGTGCTTCTAAAACT	60.221	40.000	0.00	0.00	0.00	2.66
564	578	9.635404	TCTCTGTTTTATTTCTTTGGTTAAGGA	57.365	29.630	0.00	0.00	34.46	3.36
664	678	7.373778	AGTTTGTCGGAAGTTATTACCATTC	57.626	36.000	0.00	0.00	0.00	2.67
685	699	8.695284	CCATTCGATCTAGTTTTAAAGATCTCG	58.305	37.037	11.34	6.86	43.90	4.04
836	880	3.868077	CAGCACATGAGCTACCTCTTAAC	59.132	47.826	17.58	0.00	44.54	2.01
842	886	4.985538	TGAGCTACCTCTTAACTAGTGC	57.014	45.455	0.00	0.00	38.93	4.40
854	898	0.390472	ACTAGTGCTTTCGCCAGAGC	60.390	55.000	0.00	0.00	39.33	4.09
860	904	0.952984	GCTTTCGCCAGAGCACTCTT	60.953	55.000	0.00	0.00	37.98	2.85
861	905	1.673033	GCTTTCGCCAGAGCACTCTTA	60.673	52.381	0.00	0.00	37.98	2.10
862	906	2.898705	CTTTCGCCAGAGCACTCTTAT	58.101	47.619	0.00	0.00	37.98	1.73
863	907	2.586258	TTCGCCAGAGCACTCTTATC	57.414	50.000	0.00	0.00	37.98	1.75
955	1023	0.392998	ATGCTCTTACACGGCCCAAG	60.393	55.000	0.00	0.00	0.00	3.61
984	1053	0.953471	CATTCCCTTTCCGCGTGTCA	60.953	55.000	4.92	0.00	0.00	3.58
1008	1077	2.282958	TTCTCCTCCGGCGTCAGT	60.283	61.111	6.01	0.00	0.00	3.41
1009	1078	2.549611	CTTCTCCTCCGGCGTCAGTG	62.550	65.000	6.01	0.00	0.00	3.66
1010	1079	4.803426	CTCCTCCGGCGTCAGTGC	62.803	72.222	6.01	0.00	0.00	4.40
1106	1178	0.107848	ATGTCCAACCCCGAATCGAC	60.108	55.000	3.36	0.00	0.00	4.20
1862	2206	2.026879	GACCTCATCTCCGCGCTC	59.973	66.667	5.56	0.00	0.00	5.03
1992	2336	4.720902	CCATCACAGCCACCGCCA	62.721	66.667	0.00	0.00	34.57	5.69
2129	2532	3.854669	CTCTACTGCCTGGCCCGG	61.855	72.222	17.53	9.24	0.00	5.73
2624	3575	7.878547	TCATGGTGTAATTTTATCTGATGCA	57.121	32.000	0.00	0.00	0.00	3.96
2723	3674	4.899502	TCTCTCCCAAGTAAGCTTCAAAG	58.100	43.478	0.00	0.00	31.49	2.77
2784	3744	2.367567	GGACTCCATTCCATAGCCGTAA	59.632	50.000	0.00	0.00	35.49	3.18
2791	3751	4.210537	CCATTCCATAGCCGTAAAACGTAG	59.789	45.833	0.00	0.00	40.58	3.51
2794	3754	5.266733	TCCATAGCCGTAAAACGTAGAAT	57.733	39.130	0.00	0.00	40.58	2.40
3151	4388	5.124936	AGGGCGTATTTGACAAATTAGTTCC	59.875	40.000	18.15	15.63	32.38	3.62
3313	4561	1.634973	TGGATGGATTGCACTCTTGGA	59.365	47.619	3.88	0.00	0.00	3.53
3358	4606	2.662866	CTGTAAGTAGGGATGACCGGA	58.337	52.381	9.46	0.00	46.96	5.14
3359	4607	2.623889	CTGTAAGTAGGGATGACCGGAG	59.376	54.545	9.46	0.00	46.96	4.63
3360	4608	1.340568	GTAAGTAGGGATGACCGGAGC	59.659	57.143	9.46	0.00	46.96	4.70
3361	4609	1.049289	AAGTAGGGATGACCGGAGCC	61.049	60.000	9.46	0.00	46.96	4.70
3371	4629	0.596577	GACCGGAGCCAAAACTTTCC	59.403	55.000	9.46	0.00	0.00	3.13
3408	4666	6.820152	GGAAAAATGGAAATGGAGAGGAAATG	59.180	38.462	0.00	0.00	0.00	2.32
3409	4667	5.349061	AAATGGAAATGGAGAGGAAATGC	57.651	39.130	0.00	0.00	0.00	3.56
3410	4668	3.454719	TGGAAATGGAGAGGAAATGCA	57.545	42.857	0.00	0.00	0.00	3.96
3477	4735	1.893137	AGCCTTGGAAACGGAAATTCC	59.107	47.619	0.99	0.99	45.39	3.01
3499	4757	5.990996	TCCGTTTCCGTAAATACAGAACTTT	59.009	36.000	0.00	0.00	0.00	2.66
3520	4778	1.743394	CCCTTTTTCCATGGCTACGTC	59.257	52.381	6.96	0.00	0.00	4.34
3528	4786	1.066858	CCATGGCTACGTCACTCAGTT	60.067	52.381	0.00	0.00	0.00	3.16
3551	4809	7.397192	AGTTCAGCACTCAATAAAACCCATATT	59.603	33.333	0.00	0.00	0.00	1.28
3586	4844	9.004231	ACTTAATCCCCTTCTACATTTCACTAT	57.996	33.333	0.00	0.00	0.00	2.12
3587	4845	9.495572	CTTAATCCCCTTCTACATTTCACTATC	57.504	37.037	0.00	0.00	0.00	2.08
3588	4846	5.888982	TCCCCTTCTACATTTCACTATCC	57.111	43.478	0.00	0.00	0.00	2.59
3627	4885	1.403687	GCCTCCTACCCATCTTCGCT	61.404	60.000	0.00	0.00	0.00	4.93
3629	4887	0.249657	CTCCTACCCATCTTCGCTGC	60.250	60.000	0.00	0.00	0.00	5.25
3633	4891	1.409064	CTACCCATCTTCGCTGCAGTA	59.591	52.381	16.64	0.57	0.00	2.74
3720	4979	5.637810	TGATAGCAACGAAACCAGAAAGTAG	59.362	40.000	0.00	0.00	0.00	2.57
3727	4986	3.058914	CGAAACCAGAAAGTAGCAGGTTG	60.059	47.826	0.00	0.00	41.43	3.77
3790	5049	6.872920	AGAAGAAAACAATACAAAACAGCCA	58.127	32.000	0.00	0.00	0.00	4.75
3794	5053	7.425606	AGAAAACAATACAAAACAGCCACTAG	58.574	34.615	0.00	0.00	0.00	2.57
3813	5072	6.406288	CCACTAGATTGAGCATAACAGACTCA	60.406	42.308	0.00	0.00	38.62	3.41
3816	5075	6.922247	AGATTGAGCATAACAGACTCAATG	57.078	37.500	19.05	0.00	44.24	2.82
3852	5111	7.038587	TGGTTTAGGAGATCTTTGCTTGTAGTA	60.039	37.037	0.00	0.00	0.00	1.82
3853	5112	7.492994	GGTTTAGGAGATCTTTGCTTGTAGTAG	59.507	40.741	0.00	0.00	0.00	2.57
3854	5113	7.719871	TTAGGAGATCTTTGCTTGTAGTAGT	57.280	36.000	0.00	0.00	0.00	2.73
3946	5205	3.181500	GGCGAACATCTGGTTTTGTATCC	60.181	47.826	0.00	0.00	40.63	2.59
3947	5206	3.438781	GCGAACATCTGGTTTTGTATCCA	59.561	43.478	0.00	0.00	40.63	3.41
3964	5223	2.963320	ACGTCCGCACCGTGTTTC	60.963	61.111	0.00	0.00	37.12	2.78
3984	5243	9.535878	GTGTTTCCTTTGTATTCATTTTTGGTA	57.464	29.630	0.00	0.00	0.00	3.25
4008	5267	6.756221	AGTATCTGTTTCCGTATACATTCCC	58.244	40.000	3.32	0.00	0.00	3.97
4022	5281	7.040961	CGTATACATTCCCGGGATTTTTGTATT	60.041	37.037	32.09	23.03	0.00	1.89
4024	5283	5.020132	ACATTCCCGGGATTTTTGTATTCA	58.980	37.500	27.48	4.45	0.00	2.57
4069	5328	1.401761	AACAAATGTGGCAGCACTCA	58.598	45.000	0.00	0.00	0.00	3.41
4071	5330	0.242825	CAAATGTGGCAGCACTCAGG	59.757	55.000	0.00	0.00	0.00	3.86
4076	5335	1.229177	TGGCAGCACTCAGGTCCTA	60.229	57.895	0.00	0.00	0.00	2.94
4082	5341	0.108756	GCACTCAGGTCCTACCGTTC	60.109	60.000	0.00	0.00	44.90	3.95

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
45	46	0.696485	TCTAAAGGGGCCGCCCTAAT	60.696	55.000	27.94	15.72	44.66	1.73
221	225	2.416747	CTTCAACGAGTGCTTCCATCA	58.583	47.619	0.00	0.00	0.00	3.07
237	241	2.287547	GCGGAAGTGAATTTGTGCTTCA	60.288	45.455	0.00	0.00	39.10	3.02
374	379	7.814642	AGAAGCACAACTCATAGAAGAAAATG	58.185	34.615	0.00	0.00	0.00	2.32
428	435	7.816995	TCTGTGAGTAACAAAAATGTGCTTTTT	59.183	29.630	0.00	0.00	45.70	1.94
468	476	6.503524	TCAGTTTTAGAAGCACACATTTTCC	58.496	36.000	0.00	0.00	0.00	3.13
469	477	7.985634	TTCAGTTTTAGAAGCACACATTTTC	57.014	32.000	0.00	0.00	0.00	2.29
475	483	6.253512	CACCTTTTTCAGTTTTAGAAGCACAC	59.746	38.462	0.00	0.00	0.00	3.82
490	498	2.233922	TGCGGGTTTTTCACCTTTTTCA	59.766	40.909	0.00	0.00	46.38	2.69
648	662	9.543783	AAACTAGATCGAATGGTAATAACTTCC	57.456	33.333	0.00	0.00	0.00	3.46
676	690	3.619038	GGATTTCTTGCGTCGAGATCTTT	59.381	43.478	0.00	0.00	0.00	2.52
685	699	0.872388	ACCGTTGGATTTCTTGCGTC	59.128	50.000	0.00	0.00	0.00	5.19
769	784	1.310904	GTCGCAACCTGGGTGTTTTA	58.689	50.000	14.26	0.00	0.00	1.52
774	789	1.525995	ACTTGTCGCAACCTGGGTG	60.526	57.895	7.56	7.56	0.00	4.61
777	792	1.831389	CGTCACTTGTCGCAACCTGG	61.831	60.000	0.00	0.00	0.00	4.45
778	793	1.564622	CGTCACTTGTCGCAACCTG	59.435	57.895	0.00	0.00	0.00	4.00
842	886	2.370281	TAAGAGTGCTCTGGCGAAAG	57.630	50.000	2.11	0.00	40.36	2.62
1008	1077	3.881926	TACTTGGGGGAGGCAGGCA	62.882	63.158	0.00	0.00	0.00	4.75
1009	1078	2.344878	GATACTTGGGGGAGGCAGGC	62.345	65.000	0.00	0.00	0.00	4.85
1010	1079	1.709994	GGATACTTGGGGGAGGCAGG	61.710	65.000	0.00	0.00	0.00	4.85
1011	1080	1.709994	GGGATACTTGGGGGAGGCAG	61.710	65.000	0.00	0.00	0.00	4.85
1077	1149	3.965258	TTGGACATGGCTGCCGGT	61.965	61.111	14.98	14.79	0.00	5.28
1715	1787	1.376037	GGTGGAGTCCTTGAAGCGG	60.376	63.158	11.33	0.00	0.00	5.52
1862	2206	4.856607	GAGGCGACGAAGGCGGAG	62.857	72.222	0.00	0.00	43.17	4.63
1976	2320	3.434319	GTGGCGGTGGCTGTGATG	61.434	66.667	0.00	0.00	39.81	3.07
2258	2686	4.457257	GGCAGGAAATGGTAATCATCTAGC	59.543	45.833	0.00	0.00	34.44	3.42
2632	3583	8.485392	TGATTCACATATCAACTAACAGGATCA	58.515	33.333	0.00	0.00	31.82	2.92
2680	3631	7.100409	AGAGAAACTGAAGCACTAACTATTCC	58.900	38.462	0.00	0.00	0.00	3.01
2723	3674	4.156556	TGGCTCTGAAAATCATTGTGCTAC	59.843	41.667	0.00	0.00	0.00	3.58
2784	3744	6.014840	TGTCTTCCTTCTACCATTCTACGTTT	60.015	38.462	0.00	0.00	0.00	3.60
2791	3751	7.281100	CCTGTAAATGTCTTCCTTCTACCATTC	59.719	40.741	0.00	0.00	0.00	2.67
2794	3754	5.570844	GCCTGTAAATGTCTTCCTTCTACCA	60.571	44.000	0.00	0.00	0.00	3.25
2872	4101	8.345565	CAATCTGTTAAGAGTTACCAATATGGC	58.654	37.037	0.00	0.00	37.08	4.40
3028	4261	6.448053	AATAGCGTAATATTACAGCACGTG	57.552	37.500	27.98	12.28	36.42	4.49
3151	4388	3.006110	AGGTTTGCATGACCAATGACTTG	59.994	43.478	18.72	0.00	38.72	3.16
3230	4478	6.961576	TCCAGACATGTTTTAGGTTTTAACG	58.038	36.000	0.00	0.00	0.00	3.18
3244	4492	5.380043	ACAGAATCACTTTTCCAGACATGT	58.620	37.500	0.00	0.00	0.00	3.21
3284	4532	4.159135	AGTGCAATCCATCCAAAGAATCAC	59.841	41.667	0.00	0.00	0.00	3.06
3313	4561	5.257262	GCTCCAAGGGAATTTTCTCTACTT	58.743	41.667	0.00	0.00	36.90	2.24
3354	4602	1.579429	CGGAAAGTTTTGGCTCCGG	59.421	57.895	0.00	0.00	45.62	5.14
3356	4604	1.545841	ATCCGGAAAGTTTTGGCTCC	58.454	50.000	9.01	0.00	0.00	4.70
3358	4606	4.126437	CAAAAATCCGGAAAGTTTTGGCT	58.874	39.130	27.54	9.67	37.33	4.75
3359	4607	4.025229	GTCAAAAATCCGGAAAGTTTTGGC	60.025	41.667	30.84	28.78	40.01	4.52
3360	4608	4.208253	CGTCAAAAATCCGGAAAGTTTTGG	59.792	41.667	30.84	21.99	40.01	3.28
3361	4609	4.208253	CCGTCAAAAATCCGGAAAGTTTTG	59.792	41.667	28.45	28.45	44.41	2.44
3408	4666	1.135575	CATTTCTGTTCCCGCTTCTGC	60.136	52.381	0.00	0.00	0.00	4.26
3409	4667	1.470098	CCATTTCTGTTCCCGCTTCTG	59.530	52.381	0.00	0.00	0.00	3.02
3410	4668	1.351017	TCCATTTCTGTTCCCGCTTCT	59.649	47.619	0.00	0.00	0.00	2.85
3499	4757	1.353022	ACGTAGCCATGGAAAAAGGGA	59.647	47.619	18.40	0.00	0.00	4.20
3520	4778	5.929697	TTTATTGAGTGCTGAACTGAGTG	57.070	39.130	0.00	0.00	40.07	3.51
3528	4786	8.052748	ACTAATATGGGTTTTATTGAGTGCTGA	58.947	33.333	0.00	0.00	0.00	4.26
3551	4809	8.568723	TGTAGAAGGGGATTAAGTTAGGTACTA	58.431	37.037	0.00	0.00	41.75	1.82
3627	4885	4.263025	CCATGGAAGCACCTATATACTGCA	60.263	45.833	5.56	0.00	39.86	4.41
3629	4887	5.489792	ACCATGGAAGCACCTATATACTG	57.510	43.478	21.47	0.00	39.86	2.74
3658	4916	1.378762	GGGCTGCCCTGTTTGTCTA	59.621	57.895	30.42	0.00	41.34	2.59
3672	4930	3.268032	CCAGGGGGTTCTTGGGCT	61.268	66.667	0.00	0.00	0.00	5.19
3720	4979	1.973812	GGTCTGGCCTTCAACCTGC	60.974	63.158	3.32	0.00	0.00	4.85
3782	5041	3.423539	TGCTCAATCTAGTGGCTGTTT	57.576	42.857	0.00	0.00	0.00	2.83
3790	5049	6.782082	TGAGTCTGTTATGCTCAATCTAGT	57.218	37.500	0.00	0.00	36.46	2.57
3813	5072	0.485099	TAAACCAGCCACACCCCATT	59.515	50.000	0.00	0.00	0.00	3.16
3816	5075	1.304134	CCTAAACCAGCCACACCCC	60.304	63.158	0.00	0.00	0.00	4.95
3852	5111	9.337396	TGGCGAACTATTTCAATTTATATGACT	57.663	29.630	0.00	0.00	0.00	3.41
3853	5112	9.599322	CTGGCGAACTATTTCAATTTATATGAC	57.401	33.333	0.00	0.00	0.00	3.06
3854	5113	9.337396	ACTGGCGAACTATTTCAATTTATATGA	57.663	29.630	0.00	0.00	0.00	2.15
3947	5206	2.963320	GAAACACGGTGCGGACGT	60.963	61.111	8.30	0.00	46.82	4.34
3984	5243	6.516194	CGGGAATGTATACGGAAACAGATACT	60.516	42.308	0.00	0.00	31.81	2.12
4001	5260	5.020132	TGAATACAAAAATCCCGGGAATGT	58.980	37.500	30.84	28.45	0.00	2.71
4008	5267	6.630071	AGTGGAAATGAATACAAAAATCCCG	58.370	36.000	0.00	0.00	0.00	5.14
4046	5305	2.168106	AGTGCTGCCACATTTGTTTTCA	59.832	40.909	0.00	0.00	44.53	2.69
4047	5306	2.796593	GAGTGCTGCCACATTTGTTTTC	59.203	45.455	0.00	0.00	44.53	2.29
4058	5317	1.229177	TAGGACCTGAGTGCTGCCA	60.229	57.895	3.53	0.00	45.41	4.92

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.