Multiple sequence alignment - TraesCS7A01G177600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G177600 chr7A 100.000 2182 0 0 1 2182 130890811 130892992 0.000000e+00 4030.0
1 TraesCS7A01G177600 chr7A 100.000 1515 0 0 2490 4004 130893300 130894814 0.000000e+00 2798.0
2 TraesCS7A01G177600 chr7A 96.208 923 23 5 1 911 131110571 131109649 0.000000e+00 1500.0
3 TraesCS7A01G177600 chr7A 94.769 650 29 4 1530 2178 612028548 612027903 0.000000e+00 1007.0
4 TraesCS7A01G177600 chr7A 94.615 650 31 4 1530 2178 612030652 612030006 0.000000e+00 1003.0
5 TraesCS7A01G177600 chr7A 92.416 712 24 11 2758 3439 131108804 131108093 0.000000e+00 989.0
6 TraesCS7A01G177600 chr7A 88.378 783 71 10 767 1530 131187682 131186901 0.000000e+00 924.0
7 TraesCS7A01G177600 chr7A 86.334 761 51 21 2758 3473 203697500 203698252 0.000000e+00 780.0
8 TraesCS7A01G177600 chr7A 89.346 413 20 10 3027 3426 130783375 130783776 7.730000e-137 497.0
9 TraesCS7A01G177600 chr7A 89.346 413 20 10 3027 3426 131120560 131120159 7.730000e-137 497.0
10 TraesCS7A01G177600 chr7A 94.286 280 5 3 2490 2759 612029918 612029640 6.190000e-113 418.0
11 TraesCS7A01G177600 chr7A 93.907 279 6 3 2490 2758 612027814 612027537 1.040000e-110 411.0
12 TraesCS7A01G177600 chr7A 85.237 359 39 9 651 998 203694829 203695184 1.370000e-94 357.0
13 TraesCS7A01G177600 chr7A 83.571 280 18 19 3194 3473 130784691 130784942 1.860000e-58 237.0
14 TraesCS7A01G177600 chr7A 83.571 280 18 19 3194 3473 131119244 131118993 1.860000e-58 237.0
15 TraesCS7A01G177600 chr7A 86.667 195 18 4 2569 2758 695648439 695648630 4.050000e-50 209.0
16 TraesCS7A01G177600 chr7A 81.633 245 29 4 1728 1957 5147713 5147956 5.280000e-44 189.0
17 TraesCS7A01G177600 chr7A 81.707 246 27 8 1728 1957 187772200 187772443 5.280000e-44 189.0
18 TraesCS7A01G177600 chr7A 90.164 122 10 1 3885 4004 203699017 203699138 1.490000e-34 158.0
19 TraesCS7A01G177600 chr7A 89.189 111 2 2 2490 2591 91838151 91838260 3.250000e-26 130.0
20 TraesCS7A01G177600 chr7B 85.615 1578 130 47 1 1530 94051716 94050188 0.000000e+00 1567.0
21 TraesCS7A01G177600 chr7B 84.051 1580 155 53 1 1530 94119275 94117743 0.000000e+00 1432.0
22 TraesCS7A01G177600 chr7B 90.258 893 63 12 650 1530 93650367 93651247 0.000000e+00 1146.0
23 TraesCS7A01G177600 chr7B 91.311 656 42 8 881 1530 94186357 94185711 0.000000e+00 881.0
24 TraesCS7A01G177600 chr7B 86.740 724 52 26 2758 3441 94117751 94117032 0.000000e+00 765.0
25 TraesCS7A01G177600 chr7B 86.541 691 41 30 2758 3423 93865194 93865857 0.000000e+00 713.0
26 TraesCS7A01G177600 chr7B 87.113 613 31 12 2758 3324 94142947 94142337 0.000000e+00 651.0
27 TraesCS7A01G177600 chr7B 87.113 613 31 14 2758 3324 94185719 94185109 0.000000e+00 651.0
28 TraesCS7A01G177600 chr7B 86.084 618 40 17 2758 3359 93651239 93651826 1.220000e-174 623.0
29 TraesCS7A01G177600 chr7B 84.507 639 69 18 651 1266 93864350 93864981 4.430000e-169 604.0
30 TraesCS7A01G177600 chr7B 86.218 595 26 19 2758 3320 93572134 93572704 9.580000e-166 593.0
31 TraesCS7A01G177600 chr7B 85.558 547 34 28 2930 3459 94049536 94049018 7.620000e-147 531.0
32 TraesCS7A01G177600 chr7B 86.461 421 39 11 594 998 157808101 157808519 2.840000e-121 446.0
33 TraesCS7A01G177600 chr7B 79.876 646 92 24 1531 2160 601930266 601930889 4.750000e-119 438.0
34 TraesCS7A01G177600 chr7B 81.221 426 54 17 3486 3886 157809906 157810330 1.800000e-83 320.0
35 TraesCS7A01G177600 chr7B 83.333 330 40 8 3539 3867 93576526 93576841 1.410000e-74 291.0
36 TraesCS7A01G177600 chr7B 79.096 354 40 17 238 578 157807204 157807536 3.130000e-51 213.0
37 TraesCS7A01G177600 chr7B 90.260 154 15 0 472 625 93647630 93647783 6.790000e-48 202.0
38 TraesCS7A01G177600 chr7B 84.375 192 26 4 2569 2758 41338041 41338230 6.830000e-43 185.0
39 TraesCS7A01G177600 chr7B 76.608 342 42 24 3165 3473 94142561 94142225 1.930000e-33 154.0
40 TraesCS7A01G177600 chr7B 76.608 342 42 24 3165 3473 94185333 94184997 1.930000e-33 154.0
41 TraesCS7A01G177600 chr7D 86.735 1176 66 39 2758 3883 132748661 132749796 0.000000e+00 1225.0
42 TraesCS7A01G177600 chr7D 87.029 902 78 16 651 1530 194129131 194130015 0.000000e+00 981.0
43 TraesCS7A01G177600 chr7D 88.652 749 54 16 811 1530 132830978 132830232 0.000000e+00 883.0
44 TraesCS7A01G177600 chr7D 87.906 769 56 16 775 1530 132156996 132157740 0.000000e+00 870.0
45 TraesCS7A01G177600 chr7D 89.571 700 36 14 2758 3433 132741759 132742445 0.000000e+00 854.0
46 TraesCS7A01G177600 chr7D 89.060 713 41 15 2758 3433 132830240 132829528 0.000000e+00 850.0
47 TraesCS7A01G177600 chr7D 88.440 718 41 15 2758 3433 132763924 132763207 0.000000e+00 828.0
48 TraesCS7A01G177600 chr7D 86.055 796 61 15 764 1530 132764690 132763916 0.000000e+00 809.0
49 TraesCS7A01G177600 chr7D 85.536 802 72 22 748 1530 132740991 132741767 0.000000e+00 798.0
50 TraesCS7A01G177600 chr7D 88.529 680 43 9 1530 2178 31409350 31408675 0.000000e+00 791.0
51 TraesCS7A01G177600 chr7D 86.631 748 47 26 2758 3473 132136293 132137019 0.000000e+00 778.0
52 TraesCS7A01G177600 chr7D 89.694 621 40 13 1 616 132155928 132156529 0.000000e+00 771.0
53 TraesCS7A01G177600 chr7D 84.519 801 78 25 768 1530 132135509 132136301 0.000000e+00 750.0
54 TraesCS7A01G177600 chr7D 93.680 269 11 3 2758 3026 132197989 132198251 8.060000e-107 398.0
55 TraesCS7A01G177600 chr7D 92.883 281 7 3 2490 2758 31408588 31408309 2.900000e-106 396.0
56 TraesCS7A01G177600 chr7D 82.313 441 61 15 1531 1957 13395556 13395993 2.270000e-97 366.0
57 TraesCS7A01G177600 chr7D 92.754 138 9 1 613 750 132156867 132157003 8.780000e-47 198.0
58 TraesCS7A01G177600 chr3D 84.098 654 87 8 1531 2171 61017260 61016611 2.040000e-172 616.0
59 TraesCS7A01G177600 chr3B 82.460 439 62 9 1532 1957 75839756 75839320 1.760000e-98 370.0
60 TraesCS7A01G177600 chr3B 82.232 439 63 9 1532 1957 75874807 75874371 8.180000e-97 364.0
61 TraesCS7A01G177600 chr3B 82.961 358 59 2 1530 1887 805250070 805249715 4.990000e-84 322.0
62 TraesCS7A01G177600 chr3B 84.656 189 25 3 2573 2758 805236132 805235945 6.830000e-43 185.0
63 TraesCS7A01G177600 chr3B 89.423 104 10 1 1950 2053 816469514 816469412 3.250000e-26 130.0
64 TraesCS7A01G177600 chr3B 91.176 68 6 0 1954 2021 814224125 814224058 4.260000e-15 93.5
65 TraesCS7A01G177600 chr1B 81.900 442 63 10 1530 1957 185545958 185545520 1.370000e-94 357.0
66 TraesCS7A01G177600 chr5D 79.821 446 62 15 1534 1957 421383958 421383519 2.340000e-77 300.0
67 TraesCS7A01G177600 chr5D 89.600 125 11 1 1952 2074 455765388 455765264 1.490000e-34 158.0
68 TraesCS7A01G177600 chr4D 79.025 472 66 18 1511 1957 397364190 397364653 3.910000e-75 292.0
69 TraesCS7A01G177600 chr4D 84.211 190 24 5 2573 2758 216748044 216748231 3.180000e-41 180.0
70 TraesCS7A01G177600 chr5B 76.695 472 61 19 1531 1957 146758329 146757862 2.420000e-52 217.0
71 TraesCS7A01G177600 chr6D 85.549 173 22 2 2589 2759 15703247 15703076 1.140000e-40 178.0
72 TraesCS7A01G177600 chr6D 89.474 95 10 0 1950 2044 38230015 38230109 1.950000e-23 121.0
73 TraesCS7A01G177600 chr6A 83.590 195 25 7 2569 2758 524747001 524747193 4.110000e-40 176.0
74 TraesCS7A01G177600 chr3A 87.143 140 16 1 1962 2099 699396319 699396458 1.490000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G177600 chr7A 130890811 130894814 4003 False 3414.000000 4030 100.000000 1 4004 2 chr7A.!!$F6 4003
1 TraesCS7A01G177600 chr7A 131108093 131110571 2478 True 1244.500000 1500 94.312000 1 3439 2 chr7A.!!$R2 3438
2 TraesCS7A01G177600 chr7A 131186901 131187682 781 True 924.000000 924 88.378000 767 1530 1 chr7A.!!$R1 763
3 TraesCS7A01G177600 chr7A 612027537 612030652 3115 True 709.750000 1007 94.394250 1530 2759 4 chr7A.!!$R4 1229
4 TraesCS7A01G177600 chr7A 203694829 203699138 4309 False 431.666667 780 87.245000 651 4004 3 chr7A.!!$F7 3353
5 TraesCS7A01G177600 chr7A 130783375 130784942 1567 False 367.000000 497 86.458500 3027 3473 2 chr7A.!!$F5 446
6 TraesCS7A01G177600 chr7A 131118993 131120560 1567 True 367.000000 497 86.458500 3027 3473 2 chr7A.!!$R3 446
7 TraesCS7A01G177600 chr7B 94117032 94119275 2243 True 1098.500000 1432 85.395500 1 3441 2 chr7B.!!$R2 3440
8 TraesCS7A01G177600 chr7B 94049018 94051716 2698 True 1049.000000 1567 85.586500 1 3459 2 chr7B.!!$R1 3458
9 TraesCS7A01G177600 chr7B 93864350 93865857 1507 False 658.500000 713 85.524000 651 3423 2 chr7B.!!$F5 2772
10 TraesCS7A01G177600 chr7B 93647630 93651826 4196 False 657.000000 1146 88.867333 472 3359 3 chr7B.!!$F4 2887
11 TraesCS7A01G177600 chr7B 94184997 94186357 1360 True 562.000000 881 85.010667 881 3473 3 chr7B.!!$R4 2592
12 TraesCS7A01G177600 chr7B 93572134 93576841 4707 False 442.000000 593 84.775500 2758 3867 2 chr7B.!!$F3 1109
13 TraesCS7A01G177600 chr7B 601930266 601930889 623 False 438.000000 438 79.876000 1531 2160 1 chr7B.!!$F2 629
14 TraesCS7A01G177600 chr7B 94142225 94142947 722 True 402.500000 651 81.860500 2758 3473 2 chr7B.!!$R3 715
15 TraesCS7A01G177600 chr7B 157807204 157810330 3126 False 326.333333 446 82.259333 238 3886 3 chr7B.!!$F6 3648
16 TraesCS7A01G177600 chr7D 132748661 132749796 1135 False 1225.000000 1225 86.735000 2758 3883 1 chr7D.!!$F3 1125
17 TraesCS7A01G177600 chr7D 194129131 194130015 884 False 981.000000 981 87.029000 651 1530 1 chr7D.!!$F4 879
18 TraesCS7A01G177600 chr7D 132829528 132830978 1450 True 866.500000 883 88.856000 811 3433 2 chr7D.!!$R3 2622
19 TraesCS7A01G177600 chr7D 132740991 132742445 1454 False 826.000000 854 87.553500 748 3433 2 chr7D.!!$F7 2685
20 TraesCS7A01G177600 chr7D 132763207 132764690 1483 True 818.500000 828 87.247500 764 3433 2 chr7D.!!$R2 2669
21 TraesCS7A01G177600 chr7D 132135509 132137019 1510 False 764.000000 778 85.575000 768 3473 2 chr7D.!!$F5 2705
22 TraesCS7A01G177600 chr7D 132155928 132157740 1812 False 613.000000 870 90.118000 1 1530 3 chr7D.!!$F6 1529
23 TraesCS7A01G177600 chr7D 31408309 31409350 1041 True 593.500000 791 90.706000 1530 2758 2 chr7D.!!$R1 1228
24 TraesCS7A01G177600 chr3D 61016611 61017260 649 True 616.000000 616 84.098000 1531 2171 1 chr3D.!!$R1 640

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
375 388 0.911769 CCTCAGGTGGCATGGTAGAA 59.088 55.0 0.0 0.0 0.0 2.10 F
1294 5081 0.321653 ACCGTGAGTCAAATCAGCCC 60.322 55.0 0.0 0.0 0.0 5.19 F
2126 9822 0.034896 GGGGAGAAACAGCGAGAACA 59.965 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2107 9803 0.034896 TGTTCTCGCTGTTTCTCCCC 59.965 55.0 0.00 0.0 0.00 4.81 R
2606 10302 0.034089 ATGGGCTGCCTTACCAGAAC 60.034 55.0 19.68 0.0 37.75 3.01 R
3905 18274 0.107410 TGTTGTCGTTGCACCTCCTT 60.107 50.0 0.00 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 115 2.604614 CCACGTGGCAAGTTAGCTTTTC 60.605 50.000 24.02 0.00 31.49 2.29
113 117 3.496884 CACGTGGCAAGTTAGCTTTTCTA 59.503 43.478 7.95 0.00 31.49 2.10
375 388 0.911769 CCTCAGGTGGCATGGTAGAA 59.088 55.000 0.00 0.00 0.00 2.10
416 430 3.061322 TGTTACAAATCAGACGTTCCCG 58.939 45.455 0.00 0.00 40.83 5.14
568 615 5.104527 AGGTGCCTTGTATAAGCTGAACATA 60.105 40.000 0.00 0.00 32.40 2.29
607 1203 8.635765 ATCAAACAGTGTTATTAGGTTGACAT 57.364 30.769 9.37 0.00 0.00 3.06
666 4161 1.342174 TCCGAGTCCACCAAACAGTAC 59.658 52.381 0.00 0.00 0.00 2.73
824 4328 1.484240 AGATCTTTCTGGAAGGCTCGG 59.516 52.381 0.00 0.00 35.98 4.63
879 4383 3.230202 TTTCCCCATCCCCTCCCCA 62.230 63.158 0.00 0.00 0.00 4.96
956 4485 4.022068 GCCACAAGAATCCAAAATCACAGA 60.022 41.667 0.00 0.00 0.00 3.41
974 4505 4.637534 CACAGAAGAAGAGAGAGAGAGAGG 59.362 50.000 0.00 0.00 0.00 3.69
1174 4955 2.066000 GACGACGACGACGACTACT 58.934 57.895 25.15 3.08 42.66 2.57
1234 5020 1.125633 TATGCTTCCGTTCCCTACCC 58.874 55.000 0.00 0.00 0.00 3.69
1294 5081 0.321653 ACCGTGAGTCAAATCAGCCC 60.322 55.000 0.00 0.00 0.00 5.19
1524 7099 4.410400 CCGGGGCTGACCAAGGAC 62.410 72.222 7.45 0.00 42.91 3.85
1525 7100 4.410400 CGGGGCTGACCAAGGACC 62.410 72.222 0.00 0.00 42.91 4.46
1526 7101 3.256960 GGGGCTGACCAAGGACCA 61.257 66.667 0.00 0.00 42.91 4.02
1527 7102 2.034221 GGGCTGACCAAGGACCAC 59.966 66.667 0.00 0.00 39.85 4.16
1528 7103 2.358737 GGCTGACCAAGGACCACG 60.359 66.667 0.00 0.00 35.26 4.94
1611 7187 5.763204 GGGAAATCTTAATGTCGATAAGGCA 59.237 40.000 4.82 0.00 39.68 4.75
1663 7239 7.982761 ACAAAATATGGTTCAATTGCACAAT 57.017 28.000 10.41 6.93 0.00 2.71
1664 7240 8.393671 ACAAAATATGGTTCAATTGCACAATT 57.606 26.923 10.41 2.77 41.33 2.32
1665 7241 8.848182 ACAAAATATGGTTCAATTGCACAATTT 58.152 25.926 10.41 9.27 38.84 1.82
1981 9677 9.887629 ATGTATTGAAATTGGCAATTACATCAA 57.112 25.926 27.55 27.55 37.22 2.57
1982 9678 9.887629 TGTATTGAAATTGGCAATTACATCAAT 57.112 25.926 32.55 32.55 38.45 2.57
1986 9682 8.843885 TGAAATTGGCAATTACATCAATTTGA 57.156 26.923 24.58 0.75 44.64 2.69
1987 9683 8.937884 TGAAATTGGCAATTACATCAATTTGAG 58.062 29.630 24.58 0.58 44.64 3.02
1988 9684 8.851541 AAATTGGCAATTACATCAATTTGAGT 57.148 26.923 24.58 2.27 43.67 3.41
1989 9685 8.851541 AATTGGCAATTACATCAATTTGAGTT 57.148 26.923 23.23 0.00 36.72 3.01
1990 9686 7.887996 TTGGCAATTACATCAATTTGAGTTC 57.112 32.000 5.21 0.00 34.49 3.01
1991 9687 6.990798 TGGCAATTACATCAATTTGAGTTCA 58.009 32.000 5.21 0.00 34.49 3.18
1992 9688 7.440198 TGGCAATTACATCAATTTGAGTTCAA 58.560 30.769 5.21 0.00 34.49 2.69
1993 9689 8.095792 TGGCAATTACATCAATTTGAGTTCAAT 58.904 29.630 5.21 0.11 34.49 2.57
1994 9690 9.585099 GGCAATTACATCAATTTGAGTTCAATA 57.415 29.630 5.21 0.00 34.49 1.90
2001 9697 9.479549 ACATCAATTTGAGTTCAATAATACCCT 57.520 29.630 5.21 0.00 35.55 4.34
2021 9717 9.869667 ATACCCTAGATATATGACTGGATACAC 57.130 37.037 0.00 0.00 46.17 2.90
2022 9718 7.709601 ACCCTAGATATATGACTGGATACACA 58.290 38.462 0.00 0.00 46.17 3.72
2023 9719 7.616150 ACCCTAGATATATGACTGGATACACAC 59.384 40.741 0.00 0.00 46.17 3.82
2024 9720 7.615757 CCCTAGATATATGACTGGATACACACA 59.384 40.741 0.00 0.00 46.17 3.72
2025 9721 8.462811 CCTAGATATATGACTGGATACACACAC 58.537 40.741 0.00 0.00 46.17 3.82
2026 9722 7.839680 AGATATATGACTGGATACACACACA 57.160 36.000 0.00 0.00 46.17 3.72
2027 9723 7.661968 AGATATATGACTGGATACACACACAC 58.338 38.462 0.00 0.00 46.17 3.82
2028 9724 5.675684 ATATGACTGGATACACACACACA 57.324 39.130 0.00 0.00 46.17 3.72
2029 9725 3.106242 TGACTGGATACACACACACAC 57.894 47.619 0.00 0.00 46.17 3.82
2030 9726 2.432510 TGACTGGATACACACACACACA 59.567 45.455 0.00 0.00 46.17 3.72
2031 9727 3.070878 TGACTGGATACACACACACACAT 59.929 43.478 0.00 0.00 46.17 3.21
2032 9728 4.065088 GACTGGATACACACACACACATT 58.935 43.478 0.00 0.00 46.17 2.71
2033 9729 5.221541 TGACTGGATACACACACACACATTA 60.222 40.000 0.00 0.00 46.17 1.90
2034 9730 5.804639 ACTGGATACACACACACACATTAT 58.195 37.500 0.00 0.00 46.17 1.28
2035 9731 6.237901 ACTGGATACACACACACACATTATT 58.762 36.000 0.00 0.00 46.17 1.40
2036 9732 6.714810 ACTGGATACACACACACACATTATTT 59.285 34.615 0.00 0.00 46.17 1.40
2037 9733 7.094805 ACTGGATACACACACACACATTATTTC 60.095 37.037 0.00 0.00 46.17 2.17
2038 9734 6.712547 TGGATACACACACACACATTATTTCA 59.287 34.615 0.00 0.00 46.17 2.69
2039 9735 7.229506 TGGATACACACACACACATTATTTCAA 59.770 33.333 0.00 0.00 46.17 2.69
2040 9736 8.243426 GGATACACACACACACATTATTTCAAT 58.757 33.333 0.00 0.00 0.00 2.57
2041 9737 9.624697 GATACACACACACACATTATTTCAATT 57.375 29.630 0.00 0.00 0.00 2.32
2044 9740 9.809096 ACACACACACACATTATTTCAATTAAA 57.191 25.926 0.00 0.00 0.00 1.52
2059 9755 8.994429 TTTCAATTAAAGTTCAGTTCAAAGCA 57.006 26.923 0.00 0.00 0.00 3.91
2060 9756 8.994429 TTCAATTAAAGTTCAGTTCAAAGCAA 57.006 26.923 0.00 0.00 0.00 3.91
2061 9757 8.994429 TCAATTAAAGTTCAGTTCAAAGCAAA 57.006 26.923 0.00 0.00 0.00 3.68
2062 9758 9.598517 TCAATTAAAGTTCAGTTCAAAGCAAAT 57.401 25.926 0.00 0.00 0.00 2.32
2099 9795 8.964476 ACAAGTAGAACATGGTATAAATGGAG 57.036 34.615 0.00 0.00 0.00 3.86
2100 9796 8.768397 ACAAGTAGAACATGGTATAAATGGAGA 58.232 33.333 0.00 0.00 0.00 3.71
2101 9797 9.265901 CAAGTAGAACATGGTATAAATGGAGAG 57.734 37.037 0.00 0.00 0.00 3.20
2102 9798 7.445945 AGTAGAACATGGTATAAATGGAGAGC 58.554 38.462 0.00 0.00 0.00 4.09
2103 9799 6.252599 AGAACATGGTATAAATGGAGAGCA 57.747 37.500 0.00 0.00 0.00 4.26
2104 9800 6.845908 AGAACATGGTATAAATGGAGAGCAT 58.154 36.000 0.00 0.00 0.00 3.79
2105 9801 7.293073 AGAACATGGTATAAATGGAGAGCATT 58.707 34.615 0.00 0.00 0.00 3.56
2106 9802 8.439971 AGAACATGGTATAAATGGAGAGCATTA 58.560 33.333 0.00 0.00 0.00 1.90
2107 9803 8.627208 AACATGGTATAAATGGAGAGCATTAG 57.373 34.615 0.00 0.00 0.00 1.73
2108 9804 7.170965 ACATGGTATAAATGGAGAGCATTAGG 58.829 38.462 0.00 0.00 0.00 2.69
2109 9805 6.126863 TGGTATAAATGGAGAGCATTAGGG 57.873 41.667 0.00 0.00 0.00 3.53
2110 9806 5.014123 TGGTATAAATGGAGAGCATTAGGGG 59.986 44.000 0.00 0.00 0.00 4.79
2111 9807 5.250774 GGTATAAATGGAGAGCATTAGGGGA 59.749 44.000 0.00 0.00 0.00 4.81
2112 9808 3.872459 AAATGGAGAGCATTAGGGGAG 57.128 47.619 0.00 0.00 0.00 4.30
2113 9809 2.803285 ATGGAGAGCATTAGGGGAGA 57.197 50.000 0.00 0.00 0.00 3.71
2114 9810 2.568546 TGGAGAGCATTAGGGGAGAA 57.431 50.000 0.00 0.00 0.00 2.87
2115 9811 2.845659 TGGAGAGCATTAGGGGAGAAA 58.154 47.619 0.00 0.00 0.00 2.52
2116 9812 2.505819 TGGAGAGCATTAGGGGAGAAAC 59.494 50.000 0.00 0.00 0.00 2.78
2117 9813 2.505819 GGAGAGCATTAGGGGAGAAACA 59.494 50.000 0.00 0.00 0.00 2.83
2118 9814 3.432890 GGAGAGCATTAGGGGAGAAACAG 60.433 52.174 0.00 0.00 0.00 3.16
2119 9815 2.092699 AGAGCATTAGGGGAGAAACAGC 60.093 50.000 0.00 0.00 0.00 4.40
2120 9816 1.017387 GCATTAGGGGAGAAACAGCG 58.983 55.000 0.00 0.00 0.00 5.18
2121 9817 1.406887 GCATTAGGGGAGAAACAGCGA 60.407 52.381 0.00 0.00 0.00 4.93
2122 9818 2.555199 CATTAGGGGAGAAACAGCGAG 58.445 52.381 0.00 0.00 0.00 5.03
2123 9819 1.933021 TTAGGGGAGAAACAGCGAGA 58.067 50.000 0.00 0.00 0.00 4.04
2124 9820 1.933021 TAGGGGAGAAACAGCGAGAA 58.067 50.000 0.00 0.00 0.00 2.87
2125 9821 0.321996 AGGGGAGAAACAGCGAGAAC 59.678 55.000 0.00 0.00 0.00 3.01
2126 9822 0.034896 GGGGAGAAACAGCGAGAACA 59.965 55.000 0.00 0.00 0.00 3.18
2127 9823 1.339151 GGGGAGAAACAGCGAGAACAT 60.339 52.381 0.00 0.00 0.00 2.71
2128 9824 2.003301 GGGAGAAACAGCGAGAACATC 58.997 52.381 0.00 0.00 0.00 3.06
2129 9825 2.612972 GGGAGAAACAGCGAGAACATCA 60.613 50.000 0.00 0.00 0.00 3.07
2130 9826 3.067106 GGAGAAACAGCGAGAACATCAA 58.933 45.455 0.00 0.00 0.00 2.57
2131 9827 3.498397 GGAGAAACAGCGAGAACATCAAA 59.502 43.478 0.00 0.00 0.00 2.69
2132 9828 4.458708 GAGAAACAGCGAGAACATCAAAC 58.541 43.478 0.00 0.00 0.00 2.93
2133 9829 3.876914 AGAAACAGCGAGAACATCAAACA 59.123 39.130 0.00 0.00 0.00 2.83
2134 9830 3.609103 AACAGCGAGAACATCAAACAC 57.391 42.857 0.00 0.00 0.00 3.32
2135 9831 2.560504 ACAGCGAGAACATCAAACACA 58.439 42.857 0.00 0.00 0.00 3.72
2136 9832 2.942376 ACAGCGAGAACATCAAACACAA 59.058 40.909 0.00 0.00 0.00 3.33
2137 9833 3.565482 ACAGCGAGAACATCAAACACAAT 59.435 39.130 0.00 0.00 0.00 2.71
2138 9834 4.036734 ACAGCGAGAACATCAAACACAATT 59.963 37.500 0.00 0.00 0.00 2.32
2139 9835 5.238432 ACAGCGAGAACATCAAACACAATTA 59.762 36.000 0.00 0.00 0.00 1.40
2140 9836 5.565259 CAGCGAGAACATCAAACACAATTAC 59.435 40.000 0.00 0.00 0.00 1.89
2141 9837 4.549599 GCGAGAACATCAAACACAATTACG 59.450 41.667 0.00 0.00 0.00 3.18
2142 9838 5.675970 CGAGAACATCAAACACAATTACGT 58.324 37.500 0.00 0.00 0.00 3.57
2143 9839 5.560005 CGAGAACATCAAACACAATTACGTG 59.440 40.000 0.00 0.00 42.81 4.49
2144 9840 5.757886 AGAACATCAAACACAATTACGTGG 58.242 37.500 0.00 0.00 41.38 4.94
2145 9841 5.298276 AGAACATCAAACACAATTACGTGGT 59.702 36.000 0.00 0.00 41.38 4.16
2146 9842 4.854399 ACATCAAACACAATTACGTGGTG 58.146 39.130 0.00 4.09 41.38 4.17
2147 9843 3.341857 TCAAACACAATTACGTGGTGC 57.658 42.857 0.00 0.00 41.38 5.01
2149 9845 0.589223 AACACAATTACGTGGTGCGG 59.411 50.000 0.00 0.00 46.52 5.69
2150 9846 1.154301 CACAATTACGTGGTGCGGC 60.154 57.895 0.00 0.00 46.52 6.53
2151 9847 1.598407 ACAATTACGTGGTGCGGCA 60.598 52.632 0.00 0.00 46.52 5.69
2152 9848 1.134487 CAATTACGTGGTGCGGCAG 59.866 57.895 1.18 0.00 46.52 4.85
2153 9849 2.686816 AATTACGTGGTGCGGCAGC 61.687 57.895 24.22 24.22 46.52 5.25
2166 9862 3.121030 GCAGCGGCAGTCGACAAT 61.121 61.111 19.50 0.00 42.43 2.71
2167 9863 2.780643 CAGCGGCAGTCGACAATG 59.219 61.111 19.50 9.47 42.43 2.82
2168 9864 1.737735 CAGCGGCAGTCGACAATGA 60.738 57.895 19.50 0.00 42.43 2.57
2169 9865 1.005037 AGCGGCAGTCGACAATGAA 60.005 52.632 19.50 0.00 42.43 2.57
2170 9866 1.016130 AGCGGCAGTCGACAATGAAG 61.016 55.000 19.50 6.92 42.43 3.02
2171 9867 1.421485 CGGCAGTCGACAATGAAGC 59.579 57.895 19.50 10.91 42.43 3.86
2172 9868 1.291184 CGGCAGTCGACAATGAAGCA 61.291 55.000 19.50 0.00 42.43 3.91
2173 9869 0.445436 GGCAGTCGACAATGAAGCAG 59.555 55.000 19.50 0.00 0.00 4.24
2174 9870 0.179205 GCAGTCGACAATGAAGCAGC 60.179 55.000 19.50 3.57 0.00 5.25
2175 9871 0.094216 CAGTCGACAATGAAGCAGCG 59.906 55.000 19.50 0.00 0.00 5.18
2176 9872 1.016130 AGTCGACAATGAAGCAGCGG 61.016 55.000 19.50 0.00 0.00 5.52
2177 9873 1.741401 TCGACAATGAAGCAGCGGG 60.741 57.895 0.00 0.00 0.00 6.13
2178 9874 2.753966 CGACAATGAAGCAGCGGGG 61.754 63.158 0.00 0.00 0.00 5.73
2179 9875 3.056313 GACAATGAAGCAGCGGGGC 62.056 63.158 0.00 0.00 0.00 5.80
2180 9876 4.183686 CAATGAAGCAGCGGGGCG 62.184 66.667 0.00 0.00 39.27 6.13
2181 9877 4.408821 AATGAAGCAGCGGGGCGA 62.409 61.111 0.00 0.00 39.27 5.54
2519 10215 3.859414 GCCTGAGCGCTGGGAGAT 61.859 66.667 24.76 0.00 33.99 2.75
2520 10216 2.108566 CCTGAGCGCTGGGAGATG 59.891 66.667 18.48 0.00 0.00 2.90
2521 10217 2.108566 CTGAGCGCTGGGAGATGG 59.891 66.667 18.48 0.00 0.00 3.51
2522 10218 2.364186 TGAGCGCTGGGAGATGGA 60.364 61.111 18.48 0.00 0.00 3.41
2523 10219 1.756408 CTGAGCGCTGGGAGATGGAT 61.756 60.000 18.48 0.00 0.00 3.41
2524 10220 1.005156 GAGCGCTGGGAGATGGATC 60.005 63.158 18.48 0.00 0.00 3.36
2525 10221 1.459158 AGCGCTGGGAGATGGATCT 60.459 57.895 10.39 0.00 40.50 2.75
2526 10222 1.053264 AGCGCTGGGAGATGGATCTT 61.053 55.000 10.39 0.00 37.25 2.40
2527 10223 0.883814 GCGCTGGGAGATGGATCTTG 60.884 60.000 0.00 0.00 37.25 3.02
2528 10224 0.467384 CGCTGGGAGATGGATCTTGT 59.533 55.000 0.00 0.00 37.25 3.16
2529 10225 1.539929 CGCTGGGAGATGGATCTTGTC 60.540 57.143 0.00 0.00 37.25 3.18
2537 10233 3.490890 GGATCTTGTCCTGCGTGC 58.509 61.111 0.00 0.00 44.16 5.34
2538 10234 2.456119 GGATCTTGTCCTGCGTGCG 61.456 63.158 0.00 0.00 44.16 5.34
2539 10235 1.738099 GATCTTGTCCTGCGTGCGT 60.738 57.895 0.00 0.00 0.00 5.24
2540 10236 1.959899 GATCTTGTCCTGCGTGCGTG 61.960 60.000 0.00 0.00 0.00 5.34
2541 10237 4.374702 CTTGTCCTGCGTGCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
2572 10268 4.470050 GCGTTTCGTCTGCGCTCG 62.470 66.667 9.73 11.34 46.55 5.03
2573 10269 2.799502 CGTTTCGTCTGCGCTCGA 60.800 61.111 9.73 13.63 38.14 4.04
2574 10270 2.152699 CGTTTCGTCTGCGCTCGAT 61.153 57.895 19.05 0.00 38.14 3.59
2575 10271 1.626388 GTTTCGTCTGCGCTCGATC 59.374 57.895 19.05 13.30 38.14 3.69
2576 10272 1.867812 TTTCGTCTGCGCTCGATCG 60.868 57.895 19.05 9.36 38.14 3.69
2577 10273 2.523184 TTTCGTCTGCGCTCGATCGT 62.523 55.000 15.94 0.00 38.14 3.73
2578 10274 3.308008 CGTCTGCGCTCGATCGTG 61.308 66.667 15.94 14.19 0.00 4.35
2579 10275 2.951745 GTCTGCGCTCGATCGTGG 60.952 66.667 15.94 10.45 0.00 4.94
2580 10276 4.193334 TCTGCGCTCGATCGTGGG 62.193 66.667 24.57 24.57 0.00 4.61
2583 10279 4.814294 GCGCTCGATCGTGGGGTT 62.814 66.667 28.02 0.00 0.00 4.11
2584 10280 2.885644 CGCTCGATCGTGGGGTTG 60.886 66.667 22.13 5.04 0.00 3.77
2585 10281 2.264794 GCTCGATCGTGGGGTTGT 59.735 61.111 15.94 0.00 0.00 3.32
2586 10282 2.100631 GCTCGATCGTGGGGTTGTG 61.101 63.158 15.94 0.00 0.00 3.33
2587 10283 1.292223 CTCGATCGTGGGGTTGTGT 59.708 57.895 15.94 0.00 0.00 3.72
2588 10284 0.320421 CTCGATCGTGGGGTTGTGTT 60.320 55.000 15.94 0.00 0.00 3.32
2589 10285 0.601576 TCGATCGTGGGGTTGTGTTG 60.602 55.000 15.94 0.00 0.00 3.33
2590 10286 1.579429 GATCGTGGGGTTGTGTTGC 59.421 57.895 0.00 0.00 0.00 4.17
2591 10287 1.862602 GATCGTGGGGTTGTGTTGCC 61.863 60.000 0.00 0.00 0.00 4.52
2592 10288 2.351924 ATCGTGGGGTTGTGTTGCCT 62.352 55.000 0.00 0.00 0.00 4.75
2593 10289 2.551912 CGTGGGGTTGTGTTGCCTC 61.552 63.158 0.00 0.00 0.00 4.70
2594 10290 1.454847 GTGGGGTTGTGTTGCCTCA 60.455 57.895 0.00 0.00 31.84 3.86
2595 10291 0.827507 GTGGGGTTGTGTTGCCTCAT 60.828 55.000 0.00 0.00 37.60 2.90
2596 10292 0.827089 TGGGGTTGTGTTGCCTCATG 60.827 55.000 0.00 0.00 28.73 3.07
2597 10293 1.290009 GGGTTGTGTTGCCTCATGC 59.710 57.895 0.00 0.00 41.77 4.06
2598 10294 1.081242 GGTTGTGTTGCCTCATGCG 60.081 57.895 0.00 0.00 45.60 4.73
2599 10295 1.654220 GTTGTGTTGCCTCATGCGT 59.346 52.632 0.00 0.00 45.60 5.24
2600 10296 0.661187 GTTGTGTTGCCTCATGCGTG 60.661 55.000 0.00 0.00 45.60 5.34
2601 10297 2.126734 GTGTTGCCTCATGCGTGC 60.127 61.111 0.00 0.00 45.60 5.34
2602 10298 3.725459 TGTTGCCTCATGCGTGCG 61.725 61.111 0.00 0.00 45.60 5.34
2603 10299 3.726517 GTTGCCTCATGCGTGCGT 61.727 61.111 0.00 0.00 45.60 5.24
2604 10300 3.725459 TTGCCTCATGCGTGCGTG 61.725 61.111 7.74 7.74 45.60 5.34
2605 10301 4.986645 TGCCTCATGCGTGCGTGT 62.987 61.111 13.31 0.00 45.60 4.49
2606 10302 4.450122 GCCTCATGCGTGCGTGTG 62.450 66.667 13.31 10.90 34.75 3.82
2607 10303 3.043713 CCTCATGCGTGCGTGTGT 61.044 61.111 13.31 0.00 34.75 3.72
2608 10304 2.606961 CCTCATGCGTGCGTGTGTT 61.607 57.895 13.31 0.00 34.75 3.32
2609 10305 1.154599 CTCATGCGTGCGTGTGTTC 60.155 57.895 13.31 0.00 34.75 3.18
2610 10306 1.560004 CTCATGCGTGCGTGTGTTCT 61.560 55.000 13.31 0.00 34.75 3.01
2611 10307 1.439201 CATGCGTGCGTGTGTTCTG 60.439 57.895 5.89 0.00 0.00 3.02
2612 10308 2.606961 ATGCGTGCGTGTGTTCTGG 61.607 57.895 0.00 0.00 0.00 3.86
2613 10309 3.269347 GCGTGCGTGTGTTCTGGT 61.269 61.111 0.00 0.00 0.00 4.00
2614 10310 1.952133 GCGTGCGTGTGTTCTGGTA 60.952 57.895 0.00 0.00 0.00 3.25
2615 10311 1.492319 GCGTGCGTGTGTTCTGGTAA 61.492 55.000 0.00 0.00 0.00 2.85
2616 10312 0.506932 CGTGCGTGTGTTCTGGTAAG 59.493 55.000 0.00 0.00 0.00 2.34
2617 10313 0.865769 GTGCGTGTGTTCTGGTAAGG 59.134 55.000 0.00 0.00 0.00 2.69
2618 10314 0.882927 TGCGTGTGTTCTGGTAAGGC 60.883 55.000 0.00 0.00 0.00 4.35
2619 10315 0.882927 GCGTGTGTTCTGGTAAGGCA 60.883 55.000 0.00 0.00 0.00 4.75
2620 10316 1.148310 CGTGTGTTCTGGTAAGGCAG 58.852 55.000 0.00 0.00 0.00 4.85
2621 10317 0.875059 GTGTGTTCTGGTAAGGCAGC 59.125 55.000 0.00 0.00 0.00 5.25
2622 10318 0.250727 TGTGTTCTGGTAAGGCAGCC 60.251 55.000 1.84 1.84 0.00 4.85
2623 10319 0.960861 GTGTTCTGGTAAGGCAGCCC 60.961 60.000 8.22 0.00 0.00 5.19
2624 10320 1.378762 GTTCTGGTAAGGCAGCCCA 59.621 57.895 8.22 0.00 0.00 5.36
2625 10321 0.034089 GTTCTGGTAAGGCAGCCCAT 60.034 55.000 8.22 0.00 0.00 4.00
2626 10322 0.255890 TTCTGGTAAGGCAGCCCATC 59.744 55.000 8.22 0.00 0.00 3.51
2627 10323 0.913934 TCTGGTAAGGCAGCCCATCA 60.914 55.000 8.22 1.60 0.00 3.07
2628 10324 0.034186 CTGGTAAGGCAGCCCATCAA 60.034 55.000 8.22 0.00 0.00 2.57
2629 10325 0.034186 TGGTAAGGCAGCCCATCAAG 60.034 55.000 8.22 0.00 0.00 3.02
2630 10326 0.753111 GGTAAGGCAGCCCATCAAGG 60.753 60.000 8.22 0.00 37.03 3.61
2631 10327 0.034089 GTAAGGCAGCCCATCAAGGT 60.034 55.000 8.22 0.00 34.66 3.50
2632 10328 0.704076 TAAGGCAGCCCATCAAGGTT 59.296 50.000 8.22 0.00 34.66 3.50
2633 10329 0.178924 AAGGCAGCCCATCAAGGTTT 60.179 50.000 8.22 0.00 34.66 3.27
2634 10330 0.901580 AGGCAGCCCATCAAGGTTTG 60.902 55.000 8.22 0.00 34.66 2.93
2635 10331 1.593265 GCAGCCCATCAAGGTTTGG 59.407 57.895 0.00 0.00 34.66 3.28
2638 10334 3.712287 CCCATCAAGGTTTGGGCC 58.288 61.111 0.00 0.00 45.83 5.80
2639 10335 1.079073 CCCATCAAGGTTTGGGCCT 59.921 57.895 4.53 0.00 45.83 5.19
2641 10337 0.897621 CCATCAAGGTTTGGGCCTTC 59.102 55.000 4.53 0.00 46.33 3.46
2642 10338 0.527565 CATCAAGGTTTGGGCCTTCG 59.472 55.000 4.53 0.00 46.33 3.79
2643 10339 0.112412 ATCAAGGTTTGGGCCTTCGT 59.888 50.000 4.53 0.00 46.33 3.85
2644 10340 0.536460 TCAAGGTTTGGGCCTTCGTC 60.536 55.000 4.53 0.00 46.33 4.20
2645 10341 0.537371 CAAGGTTTGGGCCTTCGTCT 60.537 55.000 4.53 0.00 46.33 4.18
2646 10342 0.185175 AAGGTTTGGGCCTTCGTCTT 59.815 50.000 4.53 0.00 45.03 3.01
2647 10343 0.185175 AGGTTTGGGCCTTCGTCTTT 59.815 50.000 4.53 0.00 34.71 2.52
2648 10344 0.596577 GGTTTGGGCCTTCGTCTTTC 59.403 55.000 4.53 0.00 0.00 2.62
2649 10345 0.596577 GTTTGGGCCTTCGTCTTTCC 59.403 55.000 4.53 0.00 0.00 3.13
2650 10346 0.183971 TTTGGGCCTTCGTCTTTCCA 59.816 50.000 4.53 0.00 0.00 3.53
2651 10347 0.536460 TTGGGCCTTCGTCTTTCCAC 60.536 55.000 4.53 0.00 0.00 4.02
2652 10348 1.674651 GGGCCTTCGTCTTTCCACC 60.675 63.158 0.84 0.00 0.00 4.61
2653 10349 2.033194 GGCCTTCGTCTTTCCACCG 61.033 63.158 0.00 0.00 0.00 4.94
2654 10350 1.005394 GCCTTCGTCTTTCCACCGA 60.005 57.895 0.00 0.00 0.00 4.69
2655 10351 1.014564 GCCTTCGTCTTTCCACCGAG 61.015 60.000 0.00 0.00 31.54 4.63
2656 10352 1.014564 CCTTCGTCTTTCCACCGAGC 61.015 60.000 0.00 0.00 31.54 5.03
2657 10353 0.038159 CTTCGTCTTTCCACCGAGCT 60.038 55.000 0.00 0.00 31.54 4.09
2658 10354 0.319555 TTCGTCTTTCCACCGAGCTG 60.320 55.000 0.00 0.00 31.54 4.24
2659 10355 2.383527 CGTCTTTCCACCGAGCTGC 61.384 63.158 0.00 0.00 0.00 5.25
2660 10356 1.301716 GTCTTTCCACCGAGCTGCA 60.302 57.895 1.02 0.00 0.00 4.41
2661 10357 1.301716 TCTTTCCACCGAGCTGCAC 60.302 57.895 1.02 0.00 0.00 4.57
2662 10358 2.281484 TTTCCACCGAGCTGCACC 60.281 61.111 1.02 0.00 0.00 5.01
2663 10359 2.738213 CTTTCCACCGAGCTGCACCT 62.738 60.000 1.02 0.00 0.00 4.00
2664 10360 2.731691 TTTCCACCGAGCTGCACCTC 62.732 60.000 1.02 0.00 0.00 3.85
2675 10371 4.344865 GCACCTCGGGCCTGGAAA 62.345 66.667 12.87 0.00 0.00 3.13
2676 10372 2.434331 CACCTCGGGCCTGGAAAA 59.566 61.111 12.87 0.00 0.00 2.29
2677 10373 1.228429 CACCTCGGGCCTGGAAAAA 60.228 57.895 12.87 0.00 0.00 1.94
2717 10413 2.026522 TGAAACTTTTCACGCCCCG 58.973 52.632 0.07 0.00 41.88 5.73
2718 10414 1.284715 GAAACTTTTCACGCCCCGG 59.715 57.895 0.00 0.00 37.15 5.73
2719 10415 2.137425 GAAACTTTTCACGCCCCGGG 62.137 60.000 15.80 15.80 37.15 5.73
2771 11703 2.358737 CCTGGACCACGTGAAGGC 60.359 66.667 19.30 2.46 0.00 4.35
2796 11728 1.726853 CGGACAAGAACATCCTGGTC 58.273 55.000 0.00 0.00 36.58 4.02
2951 12377 4.416738 GCTCTGGGTCACCCTGCC 62.417 72.222 16.04 4.45 45.70 4.85
3014 12460 1.254954 GTCGAGTAGTCCCAGTGGTT 58.745 55.000 8.74 0.00 0.00 3.67
3474 13413 6.871844 TGATTCATCTCCTAGAGTTTGACTG 58.128 40.000 0.00 0.00 0.00 3.51
3475 13414 6.665248 TGATTCATCTCCTAGAGTTTGACTGA 59.335 38.462 0.00 0.00 0.00 3.41
3478 13417 7.106439 TCATCTCCTAGAGTTTGACTGATTC 57.894 40.000 0.00 0.00 0.00 2.52
3479 13418 6.665248 TCATCTCCTAGAGTTTGACTGATTCA 59.335 38.462 0.00 0.00 0.00 2.57
3480 13419 7.344093 TCATCTCCTAGAGTTTGACTGATTCAT 59.656 37.037 0.00 0.00 32.84 2.57
3481 13420 7.106439 TCTCCTAGAGTTTGACTGATTCATC 57.894 40.000 0.00 0.00 32.84 2.92
3482 13421 6.665248 TCTCCTAGAGTTTGACTGATTCATCA 59.335 38.462 0.00 0.00 32.84 3.07
3483 13422 6.634805 TCCTAGAGTTTGACTGATTCATCAC 58.365 40.000 0.00 0.00 32.84 3.06
3484 13423 6.211384 TCCTAGAGTTTGACTGATTCATCACA 59.789 38.462 0.00 0.00 32.84 3.58
3498 13537 9.551734 CTGATTCATCACATTATCCTTGAGTTA 57.448 33.333 0.00 0.00 32.50 2.24
3528 13568 6.759827 TCTTGTAAGAACTGTAACTGTTCCAC 59.240 38.462 13.01 11.89 41.19 4.02
3572 17090 3.381908 AGGCGTTTGTTTGTTTATGTCCA 59.618 39.130 0.00 0.00 0.00 4.02
3573 17091 4.113354 GGCGTTTGTTTGTTTATGTCCAA 58.887 39.130 0.00 0.00 0.00 3.53
3574 17092 4.747605 GGCGTTTGTTTGTTTATGTCCAAT 59.252 37.500 0.00 0.00 0.00 3.16
3575 17093 5.332959 GGCGTTTGTTTGTTTATGTCCAATG 60.333 40.000 0.00 0.00 0.00 2.82
3577 17095 6.561350 GCGTTTGTTTGTTTATGTCCAATGTC 60.561 38.462 0.00 0.00 0.00 3.06
3578 17096 6.074569 CGTTTGTTTGTTTATGTCCAATGTCC 60.075 38.462 0.00 0.00 0.00 4.02
3640 17398 4.664150 TTGGTGGTTCCTGAATGTTTTC 57.336 40.909 0.00 0.00 37.07 2.29
3660 17421 4.067972 TCTGTTTGTCCTCTGTGTTACC 57.932 45.455 0.00 0.00 0.00 2.85
3686 17454 5.971895 TGTAAGAACAGTAACCGTTTGTC 57.028 39.130 0.00 0.00 0.00 3.18
3687 17455 4.810491 TGTAAGAACAGTAACCGTTTGTCC 59.190 41.667 0.00 0.00 0.00 4.02
3689 17457 3.725490 AGAACAGTAACCGTTTGTCCTC 58.275 45.455 0.00 0.00 0.00 3.71
3749 17526 5.893255 AGATGGGCATTTGCTTGTTTATCTA 59.107 36.000 2.12 0.00 41.70 1.98
3803 17585 7.872113 TTTATGCCTTTTGATTTTGTTGGTT 57.128 28.000 0.00 0.00 0.00 3.67
3846 17628 5.066505 CAGTATACAGGATGAAAAGGCAACC 59.933 44.000 5.50 0.00 39.69 3.77
3854 17636 1.137872 TGAAAAGGCAACCACGCAATT 59.862 42.857 0.00 0.00 37.17 2.32
3871 17677 5.178438 ACGCAATTCACACAAACAAAACTTT 59.822 32.000 0.00 0.00 0.00 2.66
3894 18263 9.734620 CTTTTGTTTCACTAATTGATGACTTCA 57.265 29.630 0.00 0.00 32.84 3.02
3904 18273 0.815615 GATGACTTCATCCGGCCCAC 60.816 60.000 7.87 0.00 45.24 4.61
3905 18274 1.561769 ATGACTTCATCCGGCCCACA 61.562 55.000 0.00 0.00 28.78 4.17
3934 18303 0.526954 AACGACAACACGAAGCGAGT 60.527 50.000 0.00 0.00 37.03 4.18
3944 18313 0.318275 CGAAGCGAGTCCCATAGAGC 60.318 60.000 0.00 0.00 0.00 4.09
3947 18316 1.008309 GCGAGTCCCATAGAGCGTC 60.008 63.158 0.00 0.00 0.00 5.19
3968 18337 2.512515 CTGCGGTAGCTTGCCTCC 60.513 66.667 0.00 0.00 45.42 4.30
3982 18351 2.415010 CTCCGCGATGAGTCCAGG 59.585 66.667 8.23 0.00 0.00 4.45
3998 18367 3.071206 GGCGTGGAGGAGAGCTCA 61.071 66.667 17.77 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 44 6.131389 GCTTCAGATGTCAATTTTGTTTTGC 58.869 36.000 0.00 0.00 0.00 3.68
375 388 3.511146 ACAAATCCAAATCCAGCGAACAT 59.489 39.130 0.00 0.00 0.00 2.71
450 469 8.023128 CCACCTTTGTATAATGACTCACAAAAG 58.977 37.037 0.00 0.00 39.60 2.27
568 615 6.095440 ACACTGTTTGATTTGCTAAACTCTGT 59.905 34.615 0.00 0.00 37.60 3.41
607 1203 7.067372 ACAGCTCAATTGCTTATGCTAATACAA 59.933 33.333 0.00 0.00 41.98 2.41
666 4161 5.757886 TGGACTACTTTTGCAAAGAATTCG 58.242 37.500 12.41 3.28 0.00 3.34
824 4328 0.179081 GGACAGATCGGTTGGGCTAC 60.179 60.000 0.00 0.00 0.00 3.58
879 4383 3.713826 TGTAAAGGAAGAGCGGGAAAT 57.286 42.857 0.00 0.00 0.00 2.17
956 4485 4.946160 TTCCCTCTCTCTCTCTCTTCTT 57.054 45.455 0.00 0.00 0.00 2.52
974 4505 5.586643 GTCTCTCTCTCTCTCTCTTCTTTCC 59.413 48.000 0.00 0.00 0.00 3.13
1294 5081 2.227388 GGACACCAAAAGCAGATCACAG 59.773 50.000 0.00 0.00 0.00 3.66
1453 7028 4.335647 CTTGGCCACCCAGCGTCT 62.336 66.667 3.88 0.00 43.37 4.18
1578 7154 0.395173 TAAGATTTCCCCTTGCGGCC 60.395 55.000 0.00 0.00 0.00 6.13
1768 9449 5.316167 TGTGAGGCATTGATGAAGTAAACT 58.684 37.500 0.00 0.00 0.00 2.66
1858 9539 8.514330 TTTGTATCACTTGATGTTTATACCCC 57.486 34.615 1.77 0.00 36.05 4.95
1896 9592 3.932710 GTGCATTTACCTCATCGAAGTGA 59.067 43.478 0.00 0.00 0.00 3.41
1960 9656 9.281371 TCAAATTGATGTAATTGCCAATTTCAA 57.719 25.926 14.71 14.71 43.30 2.69
1961 9657 8.843885 TCAAATTGATGTAATTGCCAATTTCA 57.156 26.923 8.15 9.87 43.30 2.69
1962 9658 8.938906 ACTCAAATTGATGTAATTGCCAATTTC 58.061 29.630 8.15 3.86 43.30 2.17
1963 9659 8.851541 ACTCAAATTGATGTAATTGCCAATTT 57.148 26.923 8.15 13.66 44.91 1.82
1964 9660 8.851541 AACTCAAATTGATGTAATTGCCAATT 57.148 26.923 7.93 7.93 38.93 2.32
1965 9661 8.095792 TGAACTCAAATTGATGTAATTGCCAAT 58.904 29.630 0.00 0.00 38.93 3.16
1966 9662 7.440198 TGAACTCAAATTGATGTAATTGCCAA 58.560 30.769 0.00 0.00 38.93 4.52
1967 9663 6.990798 TGAACTCAAATTGATGTAATTGCCA 58.009 32.000 0.00 0.00 38.93 4.92
1968 9664 7.887996 TTGAACTCAAATTGATGTAATTGCC 57.112 32.000 0.00 0.00 38.93 4.52
1975 9671 9.479549 AGGGTATTATTGAACTCAAATTGATGT 57.520 29.630 0.00 0.00 39.55 3.06
1995 9691 9.869667 GTGTATCCAGTCATATATCTAGGGTAT 57.130 37.037 0.00 0.00 0.00 2.73
1996 9692 8.842764 TGTGTATCCAGTCATATATCTAGGGTA 58.157 37.037 0.00 0.00 0.00 3.69
1997 9693 7.616150 GTGTGTATCCAGTCATATATCTAGGGT 59.384 40.741 0.00 0.00 0.00 4.34
1998 9694 7.615757 TGTGTGTATCCAGTCATATATCTAGGG 59.384 40.741 0.00 0.00 0.00 3.53
1999 9695 8.462811 GTGTGTGTATCCAGTCATATATCTAGG 58.537 40.741 0.00 0.00 0.00 3.02
2000 9696 9.014297 TGTGTGTGTATCCAGTCATATATCTAG 57.986 37.037 0.00 0.00 0.00 2.43
2001 9697 8.793592 GTGTGTGTGTATCCAGTCATATATCTA 58.206 37.037 0.00 0.00 0.00 1.98
2002 9698 7.287696 TGTGTGTGTGTATCCAGTCATATATCT 59.712 37.037 0.00 0.00 0.00 1.98
2003 9699 7.382488 GTGTGTGTGTGTATCCAGTCATATATC 59.618 40.741 0.00 0.00 0.00 1.63
2004 9700 7.147742 TGTGTGTGTGTGTATCCAGTCATATAT 60.148 37.037 0.00 0.00 0.00 0.86
2005 9701 6.153680 TGTGTGTGTGTGTATCCAGTCATATA 59.846 38.462 0.00 0.00 0.00 0.86
2006 9702 5.046663 TGTGTGTGTGTGTATCCAGTCATAT 60.047 40.000 0.00 0.00 0.00 1.78
2007 9703 4.282195 TGTGTGTGTGTGTATCCAGTCATA 59.718 41.667 0.00 0.00 0.00 2.15
2008 9704 3.070878 TGTGTGTGTGTGTATCCAGTCAT 59.929 43.478 0.00 0.00 0.00 3.06
2009 9705 2.432510 TGTGTGTGTGTGTATCCAGTCA 59.567 45.455 0.00 0.00 0.00 3.41
2010 9706 3.106242 TGTGTGTGTGTGTATCCAGTC 57.894 47.619 0.00 0.00 0.00 3.51
2011 9707 3.769739 ATGTGTGTGTGTGTATCCAGT 57.230 42.857 0.00 0.00 0.00 4.00
2012 9708 6.741992 AATAATGTGTGTGTGTGTATCCAG 57.258 37.500 0.00 0.00 0.00 3.86
2013 9709 6.712547 TGAAATAATGTGTGTGTGTGTATCCA 59.287 34.615 0.00 0.00 0.00 3.41
2014 9710 7.139896 TGAAATAATGTGTGTGTGTGTATCC 57.860 36.000 0.00 0.00 0.00 2.59
2015 9711 9.624697 AATTGAAATAATGTGTGTGTGTGTATC 57.375 29.630 0.00 0.00 0.00 2.24
2018 9714 9.809096 TTTAATTGAAATAATGTGTGTGTGTGT 57.191 25.926 0.00 0.00 0.00 3.72
2033 9729 9.598517 TGCTTTGAACTGAACTTTAATTGAAAT 57.401 25.926 0.00 0.00 0.00 2.17
2034 9730 8.994429 TGCTTTGAACTGAACTTTAATTGAAA 57.006 26.923 0.00 0.00 0.00 2.69
2035 9731 8.994429 TTGCTTTGAACTGAACTTTAATTGAA 57.006 26.923 0.00 0.00 0.00 2.69
2036 9732 8.994429 TTTGCTTTGAACTGAACTTTAATTGA 57.006 26.923 0.00 0.00 0.00 2.57
2074 9770 8.768397 TCTCCATTTATACCATGTTCTACTTGT 58.232 33.333 0.00 0.00 0.00 3.16
2075 9771 9.265901 CTCTCCATTTATACCATGTTCTACTTG 57.734 37.037 0.00 0.00 0.00 3.16
2076 9772 7.934120 GCTCTCCATTTATACCATGTTCTACTT 59.066 37.037 0.00 0.00 0.00 2.24
2077 9773 7.071196 TGCTCTCCATTTATACCATGTTCTACT 59.929 37.037 0.00 0.00 0.00 2.57
2078 9774 7.217200 TGCTCTCCATTTATACCATGTTCTAC 58.783 38.462 0.00 0.00 0.00 2.59
2079 9775 7.373617 TGCTCTCCATTTATACCATGTTCTA 57.626 36.000 0.00 0.00 0.00 2.10
2080 9776 6.252599 TGCTCTCCATTTATACCATGTTCT 57.747 37.500 0.00 0.00 0.00 3.01
2081 9777 7.516198 AATGCTCTCCATTTATACCATGTTC 57.484 36.000 0.00 0.00 41.29 3.18
2082 9778 7.667219 CCTAATGCTCTCCATTTATACCATGTT 59.333 37.037 0.00 0.00 41.29 2.71
2083 9779 7.170965 CCTAATGCTCTCCATTTATACCATGT 58.829 38.462 0.00 0.00 41.29 3.21
2084 9780 6.600822 CCCTAATGCTCTCCATTTATACCATG 59.399 42.308 0.00 0.00 41.29 3.66
2085 9781 6.297243 CCCCTAATGCTCTCCATTTATACCAT 60.297 42.308 0.00 0.00 41.29 3.55
2086 9782 5.014123 CCCCTAATGCTCTCCATTTATACCA 59.986 44.000 0.00 0.00 41.29 3.25
2087 9783 5.250774 TCCCCTAATGCTCTCCATTTATACC 59.749 44.000 0.00 0.00 41.29 2.73
2088 9784 6.213600 TCTCCCCTAATGCTCTCCATTTATAC 59.786 42.308 0.00 0.00 41.29 1.47
2089 9785 6.331032 TCTCCCCTAATGCTCTCCATTTATA 58.669 40.000 0.00 0.00 41.29 0.98
2090 9786 5.165652 TCTCCCCTAATGCTCTCCATTTAT 58.834 41.667 0.00 0.00 41.29 1.40
2091 9787 4.566837 TCTCCCCTAATGCTCTCCATTTA 58.433 43.478 0.00 0.00 41.29 1.40
2092 9788 3.397527 TCTCCCCTAATGCTCTCCATTT 58.602 45.455 0.00 0.00 41.29 2.32
2093 9789 3.066208 TCTCCCCTAATGCTCTCCATT 57.934 47.619 0.00 0.00 45.75 3.16
2094 9790 2.803285 TCTCCCCTAATGCTCTCCAT 57.197 50.000 0.00 0.00 35.06 3.41
2095 9791 2.505819 GTTTCTCCCCTAATGCTCTCCA 59.494 50.000 0.00 0.00 0.00 3.86
2096 9792 2.505819 TGTTTCTCCCCTAATGCTCTCC 59.494 50.000 0.00 0.00 0.00 3.71
2097 9793 3.802866 CTGTTTCTCCCCTAATGCTCTC 58.197 50.000 0.00 0.00 0.00 3.20
2098 9794 2.092699 GCTGTTTCTCCCCTAATGCTCT 60.093 50.000 0.00 0.00 0.00 4.09
2099 9795 2.293170 GCTGTTTCTCCCCTAATGCTC 58.707 52.381 0.00 0.00 0.00 4.26
2100 9796 1.407437 CGCTGTTTCTCCCCTAATGCT 60.407 52.381 0.00 0.00 0.00 3.79
2101 9797 1.017387 CGCTGTTTCTCCCCTAATGC 58.983 55.000 0.00 0.00 0.00 3.56
2102 9798 2.168521 TCTCGCTGTTTCTCCCCTAATG 59.831 50.000 0.00 0.00 0.00 1.90
2103 9799 2.467880 TCTCGCTGTTTCTCCCCTAAT 58.532 47.619 0.00 0.00 0.00 1.73
2104 9800 1.933021 TCTCGCTGTTTCTCCCCTAA 58.067 50.000 0.00 0.00 0.00 2.69
2105 9801 1.549170 GTTCTCGCTGTTTCTCCCCTA 59.451 52.381 0.00 0.00 0.00 3.53
2106 9802 0.321996 GTTCTCGCTGTTTCTCCCCT 59.678 55.000 0.00 0.00 0.00 4.79
2107 9803 0.034896 TGTTCTCGCTGTTTCTCCCC 59.965 55.000 0.00 0.00 0.00 4.81
2108 9804 2.003301 GATGTTCTCGCTGTTTCTCCC 58.997 52.381 0.00 0.00 0.00 4.30
2109 9805 2.688507 TGATGTTCTCGCTGTTTCTCC 58.311 47.619 0.00 0.00 0.00 3.71
2110 9806 4.024893 TGTTTGATGTTCTCGCTGTTTCTC 60.025 41.667 0.00 0.00 0.00 2.87
2111 9807 3.876914 TGTTTGATGTTCTCGCTGTTTCT 59.123 39.130 0.00 0.00 0.00 2.52
2112 9808 3.968724 GTGTTTGATGTTCTCGCTGTTTC 59.031 43.478 0.00 0.00 0.00 2.78
2113 9809 3.376859 TGTGTTTGATGTTCTCGCTGTTT 59.623 39.130 0.00 0.00 0.00 2.83
2114 9810 2.942376 TGTGTTTGATGTTCTCGCTGTT 59.058 40.909 0.00 0.00 0.00 3.16
2115 9811 2.560504 TGTGTTTGATGTTCTCGCTGT 58.439 42.857 0.00 0.00 0.00 4.40
2116 9812 3.607422 TTGTGTTTGATGTTCTCGCTG 57.393 42.857 0.00 0.00 0.00 5.18
2117 9813 4.836125 AATTGTGTTTGATGTTCTCGCT 57.164 36.364 0.00 0.00 0.00 4.93
2118 9814 4.549599 CGTAATTGTGTTTGATGTTCTCGC 59.450 41.667 0.00 0.00 0.00 5.03
2119 9815 5.560005 CACGTAATTGTGTTTGATGTTCTCG 59.440 40.000 0.00 0.00 35.12 4.04
2120 9816 5.851177 CCACGTAATTGTGTTTGATGTTCTC 59.149 40.000 0.00 0.00 38.20 2.87
2121 9817 5.298276 ACCACGTAATTGTGTTTGATGTTCT 59.702 36.000 0.00 0.00 38.20 3.01
2122 9818 5.398122 CACCACGTAATTGTGTTTGATGTTC 59.602 40.000 0.00 0.00 38.20 3.18
2123 9819 5.277825 CACCACGTAATTGTGTTTGATGTT 58.722 37.500 0.00 0.00 38.20 2.71
2124 9820 4.791411 GCACCACGTAATTGTGTTTGATGT 60.791 41.667 0.00 0.00 38.20 3.06
2125 9821 3.668191 GCACCACGTAATTGTGTTTGATG 59.332 43.478 0.00 0.00 38.20 3.07
2126 9822 3.608241 CGCACCACGTAATTGTGTTTGAT 60.608 43.478 0.00 0.00 38.20 2.57
2127 9823 2.286477 CGCACCACGTAATTGTGTTTGA 60.286 45.455 0.00 0.00 38.20 2.69
2128 9824 2.040524 CGCACCACGTAATTGTGTTTG 58.959 47.619 0.00 0.00 38.20 2.93
2129 9825 1.002251 CCGCACCACGTAATTGTGTTT 60.002 47.619 0.00 0.00 41.42 2.83
2130 9826 0.589223 CCGCACCACGTAATTGTGTT 59.411 50.000 0.00 0.00 41.42 3.32
2131 9827 1.847890 GCCGCACCACGTAATTGTGT 61.848 55.000 0.00 0.00 41.42 3.72
2132 9828 1.154301 GCCGCACCACGTAATTGTG 60.154 57.895 0.00 0.00 41.42 3.33
2133 9829 1.573829 CTGCCGCACCACGTAATTGT 61.574 55.000 0.00 0.00 41.42 2.71
2134 9830 1.134487 CTGCCGCACCACGTAATTG 59.866 57.895 0.00 0.00 41.42 2.32
2135 9831 2.686816 GCTGCCGCACCACGTAATT 61.687 57.895 0.00 0.00 41.42 1.40
2136 9832 3.124921 GCTGCCGCACCACGTAAT 61.125 61.111 0.00 0.00 41.42 1.89
2149 9845 3.121030 ATTGTCGACTGCCGCTGC 61.121 61.111 17.92 0.00 38.37 5.25
2150 9846 1.291184 TTCATTGTCGACTGCCGCTG 61.291 55.000 17.92 5.35 38.37 5.18
2151 9847 1.005037 TTCATTGTCGACTGCCGCT 60.005 52.632 17.92 0.00 38.37 5.52
2152 9848 1.421485 CTTCATTGTCGACTGCCGC 59.579 57.895 17.92 0.00 38.37 6.53
2153 9849 1.291184 TGCTTCATTGTCGACTGCCG 61.291 55.000 17.92 2.88 40.25 5.69
2154 9850 0.445436 CTGCTTCATTGTCGACTGCC 59.555 55.000 17.92 0.86 0.00 4.85
2155 9851 0.179205 GCTGCTTCATTGTCGACTGC 60.179 55.000 17.92 11.27 0.00 4.40
2156 9852 0.094216 CGCTGCTTCATTGTCGACTG 59.906 55.000 17.92 7.83 0.00 3.51
2157 9853 1.016130 CCGCTGCTTCATTGTCGACT 61.016 55.000 17.92 0.00 0.00 4.18
2158 9854 1.421485 CCGCTGCTTCATTGTCGAC 59.579 57.895 9.11 9.11 0.00 4.20
2159 9855 1.741401 CCCGCTGCTTCATTGTCGA 60.741 57.895 0.00 0.00 0.00 4.20
2160 9856 2.753966 CCCCGCTGCTTCATTGTCG 61.754 63.158 0.00 0.00 0.00 4.35
2161 9857 3.056313 GCCCCGCTGCTTCATTGTC 62.056 63.158 0.00 0.00 0.00 3.18
2162 9858 3.064324 GCCCCGCTGCTTCATTGT 61.064 61.111 0.00 0.00 0.00 2.71
2163 9859 4.183686 CGCCCCGCTGCTTCATTG 62.184 66.667 0.00 0.00 0.00 2.82
2164 9860 4.408821 TCGCCCCGCTGCTTCATT 62.409 61.111 0.00 0.00 0.00 2.57
2502 10198 3.859414 ATCTCCCAGCGCTCAGGC 61.859 66.667 7.13 0.00 0.00 4.85
2503 10199 2.108566 CATCTCCCAGCGCTCAGG 59.891 66.667 7.13 12.50 0.00 3.86
2504 10200 1.756408 ATCCATCTCCCAGCGCTCAG 61.756 60.000 7.13 3.72 0.00 3.35
2505 10201 1.752358 GATCCATCTCCCAGCGCTCA 61.752 60.000 7.13 0.00 0.00 4.26
2506 10202 1.005156 GATCCATCTCCCAGCGCTC 60.005 63.158 7.13 0.00 0.00 5.03
2507 10203 1.053264 AAGATCCATCTCCCAGCGCT 61.053 55.000 2.64 2.64 35.76 5.92
2508 10204 0.883814 CAAGATCCATCTCCCAGCGC 60.884 60.000 0.00 0.00 35.76 5.92
2509 10205 0.467384 ACAAGATCCATCTCCCAGCG 59.533 55.000 0.00 0.00 35.76 5.18
2510 10206 2.252976 GACAAGATCCATCTCCCAGC 57.747 55.000 0.00 0.00 35.76 4.85
2521 10217 1.738099 ACGCACGCAGGACAAGATC 60.738 57.895 0.00 0.00 0.00 2.75
2522 10218 2.029288 CACGCACGCAGGACAAGAT 61.029 57.895 0.00 0.00 0.00 2.40
2523 10219 2.661537 CACGCACGCAGGACAAGA 60.662 61.111 0.00 0.00 0.00 3.02
2524 10220 4.374702 GCACGCACGCAGGACAAG 62.375 66.667 0.00 0.00 0.00 3.16
2556 10252 2.056087 GATCGAGCGCAGACGAAACG 62.056 60.000 22.73 10.04 43.93 3.60
2557 10253 1.626388 GATCGAGCGCAGACGAAAC 59.374 57.895 22.73 16.99 43.93 2.78
2558 10254 1.867812 CGATCGAGCGCAGACGAAA 60.868 57.895 22.73 6.90 43.93 3.46
2559 10255 2.277310 CGATCGAGCGCAGACGAA 60.277 61.111 22.73 10.70 43.93 3.85
2560 10256 3.497031 ACGATCGAGCGCAGACGA 61.497 61.111 24.71 21.63 43.93 4.20
2561 10257 3.308008 CACGATCGAGCGCAGACG 61.308 66.667 24.71 16.14 44.07 4.18
2562 10258 2.951745 CCACGATCGAGCGCAGAC 60.952 66.667 24.71 0.00 33.86 3.51
2563 10259 4.193334 CCCACGATCGAGCGCAGA 62.193 66.667 24.71 9.45 33.86 4.26
2566 10262 4.814294 AACCCCACGATCGAGCGC 62.814 66.667 24.71 0.00 33.86 5.92
2567 10263 2.885644 CAACCCCACGATCGAGCG 60.886 66.667 23.12 23.12 37.29 5.03
2568 10264 2.100631 CACAACCCCACGATCGAGC 61.101 63.158 24.34 0.00 0.00 5.03
2569 10265 0.320421 AACACAACCCCACGATCGAG 60.320 55.000 24.34 14.64 0.00 4.04
2570 10266 0.601576 CAACACAACCCCACGATCGA 60.602 55.000 24.34 0.00 0.00 3.59
2571 10267 1.866237 CAACACAACCCCACGATCG 59.134 57.895 14.88 14.88 0.00 3.69
2572 10268 1.579429 GCAACACAACCCCACGATC 59.421 57.895 0.00 0.00 0.00 3.69
2573 10269 1.901464 GGCAACACAACCCCACGAT 60.901 57.895 0.00 0.00 0.00 3.73
2574 10270 2.517402 GGCAACACAACCCCACGA 60.517 61.111 0.00 0.00 0.00 4.35
2575 10271 2.518349 AGGCAACACAACCCCACG 60.518 61.111 0.00 0.00 41.41 4.94
2576 10272 0.827507 ATGAGGCAACACAACCCCAC 60.828 55.000 0.00 0.00 41.73 4.61
2577 10273 0.827089 CATGAGGCAACACAACCCCA 60.827 55.000 0.00 0.00 41.73 4.96
2578 10274 1.966762 CATGAGGCAACACAACCCC 59.033 57.895 0.00 0.00 41.73 4.95
2579 10275 1.290009 GCATGAGGCAACACAACCC 59.710 57.895 0.00 0.00 41.73 4.11
2580 10276 1.081242 CGCATGAGGCAACACAACC 60.081 57.895 0.00 0.00 45.17 3.77
2581 10277 0.661187 CACGCATGAGGCAACACAAC 60.661 55.000 0.00 0.00 45.17 3.32
2582 10278 1.653667 CACGCATGAGGCAACACAA 59.346 52.632 0.00 0.00 45.17 3.33
2583 10279 2.906939 GCACGCATGAGGCAACACA 61.907 57.895 0.00 0.00 45.17 3.72
2584 10280 2.126734 GCACGCATGAGGCAACAC 60.127 61.111 0.00 0.00 45.17 3.32
2585 10281 3.725459 CGCACGCATGAGGCAACA 61.725 61.111 0.00 0.00 45.17 3.33
2586 10282 3.726517 ACGCACGCATGAGGCAAC 61.727 61.111 0.00 0.00 45.17 4.17
2587 10283 3.725459 CACGCACGCATGAGGCAA 61.725 61.111 0.00 0.00 45.17 4.52
2588 10284 4.986645 ACACGCACGCATGAGGCA 62.987 61.111 0.00 0.00 45.17 4.75
2589 10285 4.450122 CACACGCACGCATGAGGC 62.450 66.667 0.00 0.00 39.90 4.70
2590 10286 2.498761 GAACACACGCACGCATGAGG 62.499 60.000 0.00 0.00 0.00 3.86
2591 10287 1.154599 GAACACACGCACGCATGAG 60.155 57.895 0.00 0.00 0.00 2.90
2592 10288 1.594021 AGAACACACGCACGCATGA 60.594 52.632 0.00 0.00 0.00 3.07
2593 10289 1.439201 CAGAACACACGCACGCATG 60.439 57.895 0.00 0.00 0.00 4.06
2594 10290 2.606961 CCAGAACACACGCACGCAT 61.607 57.895 0.00 0.00 0.00 4.73
2595 10291 2.630592 TACCAGAACACACGCACGCA 62.631 55.000 0.00 0.00 0.00 5.24
2596 10292 1.492319 TTACCAGAACACACGCACGC 61.492 55.000 0.00 0.00 0.00 5.34
2597 10293 0.506932 CTTACCAGAACACACGCACG 59.493 55.000 0.00 0.00 0.00 5.34
2598 10294 0.865769 CCTTACCAGAACACACGCAC 59.134 55.000 0.00 0.00 0.00 5.34
2599 10295 0.882927 GCCTTACCAGAACACACGCA 60.883 55.000 0.00 0.00 0.00 5.24
2600 10296 0.882927 TGCCTTACCAGAACACACGC 60.883 55.000 0.00 0.00 0.00 5.34
2601 10297 1.148310 CTGCCTTACCAGAACACACG 58.852 55.000 0.00 0.00 34.77 4.49
2602 10298 0.875059 GCTGCCTTACCAGAACACAC 59.125 55.000 0.00 0.00 34.77 3.82
2603 10299 0.250727 GGCTGCCTTACCAGAACACA 60.251 55.000 12.43 0.00 34.77 3.72
2604 10300 0.960861 GGGCTGCCTTACCAGAACAC 60.961 60.000 19.68 0.00 34.77 3.32
2605 10301 1.378762 GGGCTGCCTTACCAGAACA 59.621 57.895 19.68 0.00 34.77 3.18
2606 10302 0.034089 ATGGGCTGCCTTACCAGAAC 60.034 55.000 19.68 0.00 37.75 3.01
2607 10303 0.255890 GATGGGCTGCCTTACCAGAA 59.744 55.000 19.68 0.00 37.75 3.02
2608 10304 0.913934 TGATGGGCTGCCTTACCAGA 60.914 55.000 19.68 0.00 37.75 3.86
2609 10305 0.034186 TTGATGGGCTGCCTTACCAG 60.034 55.000 19.68 0.00 37.75 4.00
2610 10306 0.034186 CTTGATGGGCTGCCTTACCA 60.034 55.000 19.68 8.30 38.88 3.25
2611 10307 0.753111 CCTTGATGGGCTGCCTTACC 60.753 60.000 19.68 1.77 0.00 2.85
2612 10308 0.034089 ACCTTGATGGGCTGCCTTAC 60.034 55.000 19.68 10.23 41.11 2.34
2613 10309 0.704076 AACCTTGATGGGCTGCCTTA 59.296 50.000 19.68 8.66 41.11 2.69
2614 10310 0.178924 AAACCTTGATGGGCTGCCTT 60.179 50.000 19.68 6.50 41.11 4.35
2615 10311 0.901580 CAAACCTTGATGGGCTGCCT 60.902 55.000 19.68 0.00 41.11 4.75
2616 10312 1.593265 CAAACCTTGATGGGCTGCC 59.407 57.895 11.05 11.05 41.11 4.85
2617 10313 1.593265 CCAAACCTTGATGGGCTGC 59.407 57.895 0.00 0.00 41.11 5.25
2622 10318 4.872293 AGGCCCAAACCTTGATGG 57.128 55.556 0.00 0.00 36.28 3.51
2628 10324 0.185175 AAAGACGAAGGCCCAAACCT 59.815 50.000 0.00 0.00 43.91 3.50
2629 10325 0.596577 GAAAGACGAAGGCCCAAACC 59.403 55.000 0.00 0.00 0.00 3.27
2630 10326 0.596577 GGAAAGACGAAGGCCCAAAC 59.403 55.000 0.00 0.00 0.00 2.93
2631 10327 0.183971 TGGAAAGACGAAGGCCCAAA 59.816 50.000 0.00 0.00 0.00 3.28
2632 10328 0.536460 GTGGAAAGACGAAGGCCCAA 60.536 55.000 0.00 0.00 0.00 4.12
2633 10329 1.072505 GTGGAAAGACGAAGGCCCA 59.927 57.895 0.00 0.00 0.00 5.36
2634 10330 1.674651 GGTGGAAAGACGAAGGCCC 60.675 63.158 0.00 0.00 0.00 5.80
2635 10331 2.033194 CGGTGGAAAGACGAAGGCC 61.033 63.158 0.00 0.00 0.00 5.19
2636 10332 1.005394 TCGGTGGAAAGACGAAGGC 60.005 57.895 0.00 0.00 33.21 4.35
2637 10333 1.014564 GCTCGGTGGAAAGACGAAGG 61.015 60.000 0.00 0.00 36.08 3.46
2638 10334 0.038159 AGCTCGGTGGAAAGACGAAG 60.038 55.000 0.00 0.00 36.08 3.79
2639 10335 0.319555 CAGCTCGGTGGAAAGACGAA 60.320 55.000 0.00 0.00 36.08 3.85
2640 10336 1.289066 CAGCTCGGTGGAAAGACGA 59.711 57.895 0.00 0.00 35.14 4.20
2641 10337 2.383527 GCAGCTCGGTGGAAAGACG 61.384 63.158 0.00 0.00 0.00 4.18
2642 10338 1.301716 TGCAGCTCGGTGGAAAGAC 60.302 57.895 0.00 0.00 0.00 3.01
2643 10339 1.301716 GTGCAGCTCGGTGGAAAGA 60.302 57.895 0.00 0.00 0.00 2.52
2644 10340 2.328099 GGTGCAGCTCGGTGGAAAG 61.328 63.158 9.07 0.00 0.00 2.62
2645 10341 2.281484 GGTGCAGCTCGGTGGAAA 60.281 61.111 9.07 0.00 0.00 3.13
2646 10342 3.240134 GAGGTGCAGCTCGGTGGAA 62.240 63.158 28.44 0.00 0.00 3.53
2647 10343 3.695606 GAGGTGCAGCTCGGTGGA 61.696 66.667 28.44 0.00 0.00 4.02
2658 10354 3.860930 TTTTCCAGGCCCGAGGTGC 62.861 63.158 0.00 0.00 0.00 5.01
2659 10355 1.228429 TTTTTCCAGGCCCGAGGTG 60.228 57.895 0.00 0.00 0.00 4.00
2660 10356 3.257133 TTTTTCCAGGCCCGAGGT 58.743 55.556 0.00 0.00 0.00 3.85
2699 10395 1.448922 CCGGGGCGTGAAAAGTTTCA 61.449 55.000 2.32 2.32 44.31 2.69
2700 10396 1.284715 CCGGGGCGTGAAAAGTTTC 59.715 57.895 0.00 0.00 37.69 2.78
2701 10397 2.197605 CCCGGGGCGTGAAAAGTTT 61.198 57.895 14.71 0.00 0.00 2.66
2702 10398 2.596338 CCCGGGGCGTGAAAAGTT 60.596 61.111 14.71 0.00 0.00 2.66
2751 10447 3.901797 CTTCACGTGGTCCAGGGGC 62.902 68.421 17.00 0.00 0.00 5.80
2752 10448 2.347490 CTTCACGTGGTCCAGGGG 59.653 66.667 17.00 11.98 0.00 4.79
2753 10449 2.347490 CCTTCACGTGGTCCAGGG 59.653 66.667 17.00 1.84 0.00 4.45
2754 10450 2.358737 GCCTTCACGTGGTCCAGG 60.359 66.667 17.00 16.13 0.00 4.45
2755 10451 2.738521 CGCCTTCACGTGGTCCAG 60.739 66.667 17.00 6.83 0.00 3.86
2756 10452 4.980805 GCGCCTTCACGTGGTCCA 62.981 66.667 17.00 0.00 34.88 4.02
2848 11783 2.125269 GCGGTTGTACCTCGGCAT 60.125 61.111 10.41 0.00 35.66 4.40
2880 11815 2.021584 CTTGTACGCGTCAGCAGCA 61.022 57.895 18.63 3.61 45.49 4.41
2951 12377 0.908198 CTCCTCCTCCTTGACCTTGG 59.092 60.000 0.00 0.00 0.00 3.61
3014 12460 1.375908 GGCGTCTTCCATGAGCACA 60.376 57.895 0.00 0.00 0.00 4.57
3455 13394 6.871844 TGAATCAGTCAAACTCTAGGAGATG 58.128 40.000 1.31 1.18 31.51 2.90
3456 13395 7.344093 TGATGAATCAGTCAAACTCTAGGAGAT 59.656 37.037 1.31 0.00 40.50 2.75
3457 13396 6.665248 TGATGAATCAGTCAAACTCTAGGAGA 59.335 38.462 1.31 0.00 40.50 3.71
3458 13397 6.756074 GTGATGAATCAGTCAAACTCTAGGAG 59.244 42.308 0.00 0.00 40.50 3.69
3478 13417 9.994432 GAAGTTTAACTCAAGGATAATGTGATG 57.006 33.333 0.00 0.00 0.00 3.07
3479 13418 9.965902 AGAAGTTTAACTCAAGGATAATGTGAT 57.034 29.630 0.00 0.00 0.00 3.06
3480 13419 9.793259 AAGAAGTTTAACTCAAGGATAATGTGA 57.207 29.630 0.00 0.00 0.00 3.58
3481 13420 9.831737 CAAGAAGTTTAACTCAAGGATAATGTG 57.168 33.333 0.00 0.00 0.00 3.21
3482 13421 9.574516 ACAAGAAGTTTAACTCAAGGATAATGT 57.425 29.630 0.00 0.00 0.00 2.71
3498 13537 8.788325 ACAGTTACAGTTCTTACAAGAAGTTT 57.212 30.769 8.94 6.42 44.17 2.66
3528 13568 6.036517 GCCTATCTCATGTGACAACTACAAAG 59.963 42.308 0.00 0.00 0.00 2.77
3572 17090 8.125978 TGAGAAAATCAAATAAGCAGGACATT 57.874 30.769 0.00 0.00 34.02 2.71
3573 17091 7.707624 TGAGAAAATCAAATAAGCAGGACAT 57.292 32.000 0.00 0.00 34.02 3.06
3574 17092 7.523293 TTGAGAAAATCAAATAAGCAGGACA 57.477 32.000 0.00 0.00 45.00 4.02
3640 17398 4.058817 GAGGTAACACAGAGGACAAACAG 58.941 47.826 0.00 0.00 41.41 3.16
3660 17421 6.257193 ACAAACGGTTACTGTTCTTACAAGAG 59.743 38.462 10.21 0.00 36.22 2.85
3686 17454 4.201891 ACGATAACGCTACAACTACAGAGG 60.202 45.833 0.00 0.00 43.96 3.69
3687 17455 4.729086 CACGATAACGCTACAACTACAGAG 59.271 45.833 0.00 0.00 43.96 3.35
3689 17457 3.239941 GCACGATAACGCTACAACTACAG 59.760 47.826 0.00 0.00 43.96 2.74
3722 17490 0.526954 CAAGCAAATGCCCATCTCGC 60.527 55.000 0.94 0.00 43.38 5.03
3723 17491 0.813184 ACAAGCAAATGCCCATCTCG 59.187 50.000 0.94 0.00 43.38 4.04
3797 17579 7.010923 TGCAATTCTGTTCAATTTGTAACCAAC 59.989 33.333 0.00 0.00 0.00 3.77
3828 17610 1.963515 GTGGTTGCCTTTTCATCCTGT 59.036 47.619 0.00 0.00 0.00 4.00
3846 17628 4.091220 AGTTTTGTTTGTGTGAATTGCGTG 59.909 37.500 0.00 0.00 0.00 5.34
3886 17692 1.224592 GTGGGCCGGATGAAGTCAT 59.775 57.895 5.05 0.00 39.70 3.06
3888 17694 1.002624 TTGTGGGCCGGATGAAGTC 60.003 57.895 5.05 0.00 0.00 3.01
3894 18263 3.411517 CCTCCTTGTGGGCCGGAT 61.412 66.667 5.05 0.00 34.39 4.18
3904 18273 0.307760 GTTGTCGTTGCACCTCCTTG 59.692 55.000 0.00 0.00 0.00 3.61
3905 18274 0.107410 TGTTGTCGTTGCACCTCCTT 60.107 50.000 0.00 0.00 0.00 3.36
3934 18303 1.043116 CAGGGTGACGCTCTATGGGA 61.043 60.000 0.00 0.00 0.00 4.37
3968 18337 4.498520 ACGCCTGGACTCATCGCG 62.499 66.667 0.00 0.00 43.07 5.87
3982 18351 1.227205 CATGAGCTCTCCTCCACGC 60.227 63.158 16.19 0.00 39.98 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.