Multiple sequence alignment - TraesCS7A01G177000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G177000 chr7A 100.000 3096 0 0 1 3096 130291649 130294744 0.000000e+00 5718.0
1 TraesCS7A01G177000 chr7A 83.306 617 96 7 1 613 156118172 156117559 2.080000e-156 562.0
2 TraesCS7A01G177000 chr7D 86.794 1204 93 34 884 2059 131597781 131598946 0.000000e+00 1282.0
3 TraesCS7A01G177000 chr7D 84.027 1033 71 22 2111 3096 131598967 131599952 0.000000e+00 907.0
4 TraesCS7A01G177000 chr7B 85.555 1253 77 42 766 1989 92554699 92555876 0.000000e+00 1216.0
5 TraesCS7A01G177000 chr7B 87.347 735 42 17 2362 3093 92556383 92557069 0.000000e+00 795.0
6 TraesCS7A01G177000 chr7B 85.874 269 18 14 2111 2366 92556095 92556356 5.090000e-68 268.0
7 TraesCS7A01G177000 chr5A 100.000 37 0 0 640 676 288898146 288898110 5.540000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G177000 chr7A 130291649 130294744 3095 False 5718.000000 5718 100.000000 1 3096 1 chr7A.!!$F1 3095
1 TraesCS7A01G177000 chr7A 156117559 156118172 613 True 562.000000 562 83.306000 1 613 1 chr7A.!!$R1 612
2 TraesCS7A01G177000 chr7D 131597781 131599952 2171 False 1094.500000 1282 85.410500 884 3096 2 chr7D.!!$F1 2212
3 TraesCS7A01G177000 chr7B 92554699 92557069 2370 False 759.666667 1216 86.258667 766 3093 3 chr7B.!!$F1 2327

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 651 0.034616 CTCCCGATTCCTCAGCCATC 59.965 60.0 0.0 0.0 0.00 3.51 F
1674 1714 0.034767 CCGGATGGATGGATGGATGG 60.035 60.0 0.0 0.0 37.49 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1682 1722 0.318275 CCGGATTAGACGAGCAGAGC 60.318 60.0 0.0 0.0 0.0 4.09 R
2786 3032 0.183492 AGAACAGCCCAGCAGTCAAA 59.817 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 0.970937 ACTAGTAGCCGGCAAGCTGA 60.971 55.000 31.54 7.44 44.67 4.26
22 23 0.175760 CTAGTAGCCGGCAAGCTGAA 59.824 55.000 31.54 8.11 44.67 3.02
65 66 1.884235 AACAAAGGACTTGAGGCGAG 58.116 50.000 0.00 0.00 38.50 5.03
66 67 0.759346 ACAAAGGACTTGAGGCGAGT 59.241 50.000 0.00 0.00 38.50 4.18
79 80 2.892425 CGAGTCCAGGCGGCATTC 60.892 66.667 13.08 0.00 0.00 2.67
150 151 2.350514 GCAGGAAGGAGCAGCAGT 59.649 61.111 0.00 0.00 0.00 4.40
156 157 1.544314 GGAAGGAGCAGCAGTCAAAGT 60.544 52.381 0.00 0.00 0.00 2.66
157 158 1.803555 GAAGGAGCAGCAGTCAAAGTC 59.196 52.381 0.00 0.00 0.00 3.01
159 160 1.294659 GGAGCAGCAGTCAAAGTCGG 61.295 60.000 0.00 0.00 0.00 4.79
160 161 1.905922 GAGCAGCAGTCAAAGTCGGC 61.906 60.000 0.00 0.00 0.00 5.54
168 169 2.742372 CAAAGTCGGCGAGGGTGG 60.742 66.667 11.20 0.00 0.00 4.61
178 179 2.836154 GAGGGTGGCAGTGGTGAA 59.164 61.111 0.00 0.00 0.00 3.18
180 181 1.768684 GAGGGTGGCAGTGGTGAAGA 61.769 60.000 0.00 0.00 0.00 2.87
182 183 1.754745 GGTGGCAGTGGTGAAGAGA 59.245 57.895 0.00 0.00 0.00 3.10
184 185 0.603975 GTGGCAGTGGTGAAGAGACC 60.604 60.000 0.00 0.00 36.43 3.85
187 188 1.293498 CAGTGGTGAAGAGACCGGG 59.707 63.158 6.32 0.00 39.07 5.73
208 209 2.744741 GAGGAAGCGGAAAGAGAAAAGG 59.255 50.000 0.00 0.00 0.00 3.11
219 220 0.322546 GAGAAAAGGCGGTGGTGGAT 60.323 55.000 0.00 0.00 0.00 3.41
220 221 0.609131 AGAAAAGGCGGTGGTGGATG 60.609 55.000 0.00 0.00 0.00 3.51
222 223 2.075355 AAAAGGCGGTGGTGGATGGA 62.075 55.000 0.00 0.00 0.00 3.41
228 229 1.078426 GGTGGTGGATGGAACGGAG 60.078 63.158 0.00 0.00 0.00 4.63
247 248 0.599204 GACGAAGGAGGTTTGACGCA 60.599 55.000 0.00 0.00 0.00 5.24
286 287 2.110899 TGAGAAGAGGAAGGTCTGGTCT 59.889 50.000 0.00 0.00 0.00 3.85
289 290 2.704190 AGAGGAAGGTCTGGTCTTGA 57.296 50.000 0.00 0.00 0.00 3.02
292 293 2.900546 GAGGAAGGTCTGGTCTTGAAGA 59.099 50.000 0.00 0.00 0.00 2.87
293 294 3.517500 GAGGAAGGTCTGGTCTTGAAGAT 59.482 47.826 0.00 0.00 0.00 2.40
294 295 4.689062 AGGAAGGTCTGGTCTTGAAGATA 58.311 43.478 0.00 0.00 0.00 1.98
298 299 2.197577 GTCTGGTCTTGAAGATAGCGC 58.802 52.381 0.00 0.00 0.00 5.92
299 300 1.824852 TCTGGTCTTGAAGATAGCGCA 59.175 47.619 11.47 0.00 0.00 6.09
312 313 4.312231 GCGCACGTTGAAGCAGCA 62.312 61.111 0.30 0.00 33.03 4.41
334 335 0.972471 CAACCCCTCCAATGAAGGCC 60.972 60.000 0.00 0.00 0.00 5.19
337 338 1.076485 CCCTCCAATGAAGGCCTGG 60.076 63.158 5.69 3.12 0.00 4.45
343 344 1.283029 CCAATGAAGGCCTGGAGAAGA 59.717 52.381 5.69 0.00 31.38 2.87
370 371 0.994995 CGAGCAGTTCATCGAACCAG 59.005 55.000 3.31 0.00 42.85 4.00
378 379 3.118956 AGTTCATCGAACCAGAGCTTAGG 60.119 47.826 3.31 4.01 42.85 2.69
382 383 0.902531 CGAACCAGAGCTTAGGGGAA 59.097 55.000 9.83 0.00 0.00 3.97
387 388 2.022527 ACCAGAGCTTAGGGGAAGAGAT 60.023 50.000 9.83 0.00 37.33 2.75
388 389 2.368221 CCAGAGCTTAGGGGAAGAGATG 59.632 54.545 0.00 0.00 37.33 2.90
391 392 0.250081 GCTTAGGGGAAGAGATGGCG 60.250 60.000 0.00 0.00 37.33 5.69
397 398 0.537188 GGGAAGAGATGGCGAGACAA 59.463 55.000 0.00 0.00 0.00 3.18
406 407 0.756294 TGGCGAGACAAAGAAGGTGA 59.244 50.000 0.00 0.00 0.00 4.02
417 419 4.103153 ACAAAGAAGGTGATCTGAGGTTCA 59.897 41.667 0.00 0.00 0.00 3.18
449 451 2.746277 CAGGCGTGTAAGGTGGGC 60.746 66.667 0.00 0.00 0.00 5.36
454 456 1.515954 CGTGTAAGGTGGGCGAGAT 59.484 57.895 0.00 0.00 0.00 2.75
455 457 0.108329 CGTGTAAGGTGGGCGAGATT 60.108 55.000 0.00 0.00 0.00 2.40
472 474 0.321653 ATTGACCTCGTCACCAAGGC 60.322 55.000 0.00 0.00 42.60 4.35
489 491 3.393970 CCCAGGAAGAGGCGCAGA 61.394 66.667 10.83 0.00 0.00 4.26
508 510 4.457496 ACGCATGAGCCAGGTCGG 62.457 66.667 0.00 0.00 37.52 4.79
527 529 3.376078 GTACCGTGGCGAGTGGGA 61.376 66.667 0.00 0.00 0.00 4.37
611 617 2.851588 GGGGGAGGAGGAGCCATC 60.852 72.222 0.00 0.00 40.02 3.51
612 618 2.288643 GGGGAGGAGGAGCCATCT 59.711 66.667 0.00 0.00 40.02 2.90
613 619 1.841103 GGGGAGGAGGAGCCATCTC 60.841 68.421 0.00 0.00 40.02 2.75
621 627 3.146182 GAGCCATCTCCTGCCGAT 58.854 61.111 0.00 0.00 33.19 4.18
622 628 2.355946 GAGCCATCTCCTGCCGATA 58.644 57.895 0.00 0.00 33.19 2.92
623 629 0.681733 GAGCCATCTCCTGCCGATAA 59.318 55.000 0.00 0.00 33.19 1.75
624 630 1.277557 GAGCCATCTCCTGCCGATAAT 59.722 52.381 0.00 0.00 33.19 1.28
625 631 1.002888 AGCCATCTCCTGCCGATAATG 59.997 52.381 0.00 0.00 0.00 1.90
626 632 1.446907 CCATCTCCTGCCGATAATGC 58.553 55.000 0.00 0.00 0.00 3.56
627 633 1.002888 CCATCTCCTGCCGATAATGCT 59.997 52.381 0.00 0.00 0.00 3.79
628 634 2.344950 CATCTCCTGCCGATAATGCTC 58.655 52.381 0.00 0.00 0.00 4.26
629 635 0.681733 TCTCCTGCCGATAATGCTCC 59.318 55.000 0.00 0.00 0.00 4.70
630 636 0.321122 CTCCTGCCGATAATGCTCCC 60.321 60.000 0.00 0.00 0.00 4.30
631 637 1.669115 CCTGCCGATAATGCTCCCG 60.669 63.158 0.00 0.00 0.00 5.14
632 638 1.367471 CTGCCGATAATGCTCCCGA 59.633 57.895 0.00 0.00 0.00 5.14
633 639 0.036952 CTGCCGATAATGCTCCCGAT 60.037 55.000 0.00 0.00 0.00 4.18
634 640 0.396435 TGCCGATAATGCTCCCGATT 59.604 50.000 0.00 0.00 0.00 3.34
635 641 1.079503 GCCGATAATGCTCCCGATTC 58.920 55.000 0.00 0.00 0.00 2.52
636 642 1.726853 CCGATAATGCTCCCGATTCC 58.273 55.000 0.00 0.00 0.00 3.01
637 643 1.276421 CCGATAATGCTCCCGATTCCT 59.724 52.381 0.00 0.00 0.00 3.36
638 644 2.611518 CGATAATGCTCCCGATTCCTC 58.388 52.381 0.00 0.00 0.00 3.71
639 645 2.029020 CGATAATGCTCCCGATTCCTCA 60.029 50.000 0.00 0.00 0.00 3.86
640 646 3.594134 GATAATGCTCCCGATTCCTCAG 58.406 50.000 0.00 0.00 0.00 3.35
641 647 0.179034 AATGCTCCCGATTCCTCAGC 60.179 55.000 0.00 0.00 0.00 4.26
642 648 2.049627 ATGCTCCCGATTCCTCAGCC 62.050 60.000 0.00 0.00 0.00 4.85
643 649 2.735772 GCTCCCGATTCCTCAGCCA 61.736 63.158 0.00 0.00 0.00 4.75
644 650 2.049627 GCTCCCGATTCCTCAGCCAT 62.050 60.000 0.00 0.00 0.00 4.40
645 651 0.034616 CTCCCGATTCCTCAGCCATC 59.965 60.000 0.00 0.00 0.00 3.51
646 652 0.690744 TCCCGATTCCTCAGCCATCA 60.691 55.000 0.00 0.00 0.00 3.07
647 653 0.399454 CCCGATTCCTCAGCCATCAT 59.601 55.000 0.00 0.00 0.00 2.45
648 654 1.520494 CCGATTCCTCAGCCATCATG 58.480 55.000 0.00 0.00 0.00 3.07
649 655 1.202734 CCGATTCCTCAGCCATCATGT 60.203 52.381 0.00 0.00 0.00 3.21
650 656 2.569059 CGATTCCTCAGCCATCATGTT 58.431 47.619 0.00 0.00 0.00 2.71
651 657 2.289820 CGATTCCTCAGCCATCATGTTG 59.710 50.000 0.00 0.00 0.00 3.33
652 658 2.885135 TTCCTCAGCCATCATGTTGT 57.115 45.000 3.19 0.00 0.00 3.32
653 659 3.998913 TTCCTCAGCCATCATGTTGTA 57.001 42.857 3.19 0.00 0.00 2.41
654 660 3.548745 TCCTCAGCCATCATGTTGTAG 57.451 47.619 3.19 0.00 0.00 2.74
655 661 2.840038 TCCTCAGCCATCATGTTGTAGT 59.160 45.455 3.19 0.00 0.00 2.73
656 662 3.264193 TCCTCAGCCATCATGTTGTAGTT 59.736 43.478 3.19 0.00 0.00 2.24
657 663 4.012374 CCTCAGCCATCATGTTGTAGTTT 58.988 43.478 3.19 0.00 0.00 2.66
658 664 4.142534 CCTCAGCCATCATGTTGTAGTTTG 60.143 45.833 3.19 0.00 0.00 2.93
659 665 4.397420 TCAGCCATCATGTTGTAGTTTGT 58.603 39.130 3.19 0.00 0.00 2.83
660 666 4.826733 TCAGCCATCATGTTGTAGTTTGTT 59.173 37.500 3.19 0.00 0.00 2.83
661 667 5.048782 TCAGCCATCATGTTGTAGTTTGTTC 60.049 40.000 3.19 0.00 0.00 3.18
662 668 4.826733 AGCCATCATGTTGTAGTTTGTTCA 59.173 37.500 3.19 0.00 0.00 3.18
663 669 5.477984 AGCCATCATGTTGTAGTTTGTTCAT 59.522 36.000 3.19 0.00 0.00 2.57
664 670 6.015180 AGCCATCATGTTGTAGTTTGTTCATT 60.015 34.615 3.19 0.00 0.00 2.57
665 671 7.176515 AGCCATCATGTTGTAGTTTGTTCATTA 59.823 33.333 3.19 0.00 0.00 1.90
666 672 7.273381 GCCATCATGTTGTAGTTTGTTCATTAC 59.727 37.037 3.19 0.00 0.00 1.89
667 673 7.481483 CCATCATGTTGTAGTTTGTTCATTACG 59.519 37.037 3.19 0.00 0.00 3.18
668 674 6.367421 TCATGTTGTAGTTTGTTCATTACGC 58.633 36.000 0.00 0.00 0.00 4.42
669 675 5.098218 TGTTGTAGTTTGTTCATTACGCC 57.902 39.130 0.00 0.00 0.00 5.68
670 676 4.817464 TGTTGTAGTTTGTTCATTACGCCT 59.183 37.500 0.00 0.00 0.00 5.52
671 677 5.049954 TGTTGTAGTTTGTTCATTACGCCTC 60.050 40.000 0.00 0.00 0.00 4.70
672 678 3.998341 TGTAGTTTGTTCATTACGCCTCC 59.002 43.478 0.00 0.00 0.00 4.30
673 679 3.134574 AGTTTGTTCATTACGCCTCCA 57.865 42.857 0.00 0.00 0.00 3.86
674 680 2.812011 AGTTTGTTCATTACGCCTCCAC 59.188 45.455 0.00 0.00 0.00 4.02
675 681 2.812011 GTTTGTTCATTACGCCTCCACT 59.188 45.455 0.00 0.00 0.00 4.00
676 682 2.380084 TGTTCATTACGCCTCCACTC 57.620 50.000 0.00 0.00 0.00 3.51
677 683 1.621317 TGTTCATTACGCCTCCACTCA 59.379 47.619 0.00 0.00 0.00 3.41
678 684 2.037902 TGTTCATTACGCCTCCACTCAA 59.962 45.455 0.00 0.00 0.00 3.02
679 685 2.380084 TCATTACGCCTCCACTCAAC 57.620 50.000 0.00 0.00 0.00 3.18
680 686 1.621317 TCATTACGCCTCCACTCAACA 59.379 47.619 0.00 0.00 0.00 3.33
681 687 2.002586 CATTACGCCTCCACTCAACAG 58.997 52.381 0.00 0.00 0.00 3.16
682 688 0.320421 TTACGCCTCCACTCAACAGC 60.320 55.000 0.00 0.00 0.00 4.40
683 689 1.468506 TACGCCTCCACTCAACAGCA 61.469 55.000 0.00 0.00 0.00 4.41
684 690 2.320587 CGCCTCCACTCAACAGCAC 61.321 63.158 0.00 0.00 0.00 4.40
685 691 1.227943 GCCTCCACTCAACAGCACA 60.228 57.895 0.00 0.00 0.00 4.57
686 692 0.819259 GCCTCCACTCAACAGCACAA 60.819 55.000 0.00 0.00 0.00 3.33
687 693 1.679139 CCTCCACTCAACAGCACAAA 58.321 50.000 0.00 0.00 0.00 2.83
688 694 1.334869 CCTCCACTCAACAGCACAAAC 59.665 52.381 0.00 0.00 0.00 2.93
689 695 2.016318 CTCCACTCAACAGCACAAACA 58.984 47.619 0.00 0.00 0.00 2.83
690 696 2.423185 CTCCACTCAACAGCACAAACAA 59.577 45.455 0.00 0.00 0.00 2.83
691 697 2.822561 TCCACTCAACAGCACAAACAAA 59.177 40.909 0.00 0.00 0.00 2.83
692 698 3.119531 TCCACTCAACAGCACAAACAAAG 60.120 43.478 0.00 0.00 0.00 2.77
693 699 3.119531 CCACTCAACAGCACAAACAAAGA 60.120 43.478 0.00 0.00 0.00 2.52
694 700 4.440525 CCACTCAACAGCACAAACAAAGAT 60.441 41.667 0.00 0.00 0.00 2.40
695 701 4.736793 CACTCAACAGCACAAACAAAGATC 59.263 41.667 0.00 0.00 0.00 2.75
696 702 4.641989 ACTCAACAGCACAAACAAAGATCT 59.358 37.500 0.00 0.00 0.00 2.75
697 703 5.126061 ACTCAACAGCACAAACAAAGATCTT 59.874 36.000 0.88 0.88 0.00 2.40
698 704 5.964758 TCAACAGCACAAACAAAGATCTTT 58.035 33.333 15.11 15.11 0.00 2.52
699 705 6.397272 TCAACAGCACAAACAAAGATCTTTT 58.603 32.000 18.16 7.41 0.00 2.27
700 706 7.542890 TCAACAGCACAAACAAAGATCTTTTA 58.457 30.769 18.16 0.00 0.00 1.52
701 707 7.487829 TCAACAGCACAAACAAAGATCTTTTAC 59.512 33.333 18.16 0.00 0.00 2.01
702 708 5.971202 ACAGCACAAACAAAGATCTTTTACG 59.029 36.000 18.16 9.90 0.00 3.18
703 709 5.399301 CAGCACAAACAAAGATCTTTTACGG 59.601 40.000 18.16 9.55 0.00 4.02
704 710 4.148174 GCACAAACAAAGATCTTTTACGGC 59.852 41.667 18.16 12.80 0.00 5.68
705 711 5.519722 CACAAACAAAGATCTTTTACGGCT 58.480 37.500 18.16 0.00 0.00 5.52
706 712 6.664515 CACAAACAAAGATCTTTTACGGCTA 58.335 36.000 18.16 0.00 0.00 3.93
707 713 7.136119 CACAAACAAAGATCTTTTACGGCTAA 58.864 34.615 18.16 0.00 0.00 3.09
708 714 7.646130 CACAAACAAAGATCTTTTACGGCTAAA 59.354 33.333 18.16 0.00 0.00 1.85
709 715 7.646526 ACAAACAAAGATCTTTTACGGCTAAAC 59.353 33.333 18.16 0.00 0.00 2.01
710 716 6.870971 ACAAAGATCTTTTACGGCTAAACA 57.129 33.333 18.16 0.00 0.00 2.83
711 717 6.899114 ACAAAGATCTTTTACGGCTAAACAG 58.101 36.000 18.16 5.05 0.00 3.16
712 718 5.547181 AAGATCTTTTACGGCTAAACAGC 57.453 39.130 0.88 0.00 0.00 4.40
713 719 4.833390 AGATCTTTTACGGCTAAACAGCT 58.167 39.130 0.00 0.00 34.73 4.24
714 720 4.870991 AGATCTTTTACGGCTAAACAGCTC 59.129 41.667 0.00 0.00 34.73 4.09
715 721 3.332034 TCTTTTACGGCTAAACAGCTCC 58.668 45.455 0.00 0.00 34.73 4.70
716 722 3.007614 TCTTTTACGGCTAAACAGCTCCT 59.992 43.478 0.00 0.00 34.73 3.69
717 723 2.380084 TTACGGCTAAACAGCTCCTG 57.620 50.000 0.00 0.00 37.52 3.86
718 724 1.552578 TACGGCTAAACAGCTCCTGA 58.447 50.000 0.00 0.00 35.18 3.86
719 725 0.037232 ACGGCTAAACAGCTCCTGAC 60.037 55.000 0.00 0.00 35.18 3.51
720 726 0.247736 CGGCTAAACAGCTCCTGACT 59.752 55.000 0.00 0.00 35.18 3.41
721 727 1.731720 GGCTAAACAGCTCCTGACTG 58.268 55.000 0.00 0.00 41.08 3.51
725 731 3.798758 ACAGCTCCTGACTGTCCC 58.201 61.111 5.17 0.00 45.06 4.46
726 732 1.915769 ACAGCTCCTGACTGTCCCC 60.916 63.158 5.17 0.00 45.06 4.81
727 733 2.284995 AGCTCCTGACTGTCCCCC 60.285 66.667 5.17 0.00 0.00 5.40
728 734 3.775654 GCTCCTGACTGTCCCCCG 61.776 72.222 5.17 0.00 0.00 5.73
729 735 3.775654 CTCCTGACTGTCCCCCGC 61.776 72.222 5.17 0.00 0.00 6.13
730 736 4.631740 TCCTGACTGTCCCCCGCA 62.632 66.667 5.17 0.00 0.00 5.69
731 737 3.636231 CCTGACTGTCCCCCGCAA 61.636 66.667 5.17 0.00 0.00 4.85
732 738 2.429930 CTGACTGTCCCCCGCAAA 59.570 61.111 5.17 0.00 0.00 3.68
733 739 1.228124 CTGACTGTCCCCCGCAAAA 60.228 57.895 5.17 0.00 0.00 2.44
734 740 0.821711 CTGACTGTCCCCCGCAAAAA 60.822 55.000 5.17 0.00 0.00 1.94
760 766 9.651913 AAAAACTATTGACTGCAAAGAGAAAAA 57.348 25.926 0.00 0.00 37.59 1.94
798 804 3.767230 CGACTGCCGCACTCAACG 61.767 66.667 0.00 0.00 0.00 4.10
839 845 0.899253 CCCATGCCACCAATCACACA 60.899 55.000 0.00 0.00 0.00 3.72
841 847 0.960286 CATGCCACCAATCACACACA 59.040 50.000 0.00 0.00 0.00 3.72
872 883 2.108976 CACCCCACCATCCGATCG 59.891 66.667 8.51 8.51 0.00 3.69
874 885 4.626081 CCCCACCATCCGATCGGC 62.626 72.222 29.62 0.00 34.68 5.54
875 886 4.626081 CCCACCATCCGATCGGCC 62.626 72.222 29.62 0.00 34.68 6.13
876 887 3.860605 CCACCATCCGATCGGCCA 61.861 66.667 29.62 14.05 34.68 5.36
877 888 2.588877 CACCATCCGATCGGCCAC 60.589 66.667 29.62 0.00 34.68 5.01
878 889 4.221422 ACCATCCGATCGGCCACG 62.221 66.667 29.62 17.43 42.74 4.94
1038 1061 4.180496 CGGCCACCGTTAGTCTTC 57.820 61.111 2.24 0.00 42.73 2.87
1039 1062 1.447314 CGGCCACCGTTAGTCTTCC 60.447 63.158 2.24 0.00 42.73 3.46
1040 1063 1.675219 GGCCACCGTTAGTCTTCCA 59.325 57.895 0.00 0.00 0.00 3.53
1041 1064 0.391263 GGCCACCGTTAGTCTTCCAG 60.391 60.000 0.00 0.00 0.00 3.86
1048 1071 0.741221 GTTAGTCTTCCAGCCAGCCG 60.741 60.000 0.00 0.00 0.00 5.52
1074 1097 2.252855 CGAGCTAGACGGGATCGC 59.747 66.667 0.00 0.00 40.63 4.58
1367 1396 4.980805 GCGGTCACCACGGCAAGA 62.981 66.667 0.00 0.00 45.81 3.02
1374 1403 2.147387 ACCACGGCAAGAAGGAGGT 61.147 57.895 0.00 0.00 0.00 3.85
1375 1404 1.073199 CCACGGCAAGAAGGAGGTT 59.927 57.895 0.00 0.00 0.00 3.50
1377 1406 1.073199 ACGGCAAGAAGGAGGTTGG 59.927 57.895 0.00 0.00 0.00 3.77
1379 1408 1.767692 GGCAAGAAGGAGGTTGGGA 59.232 57.895 0.00 0.00 0.00 4.37
1381 1410 0.402121 GCAAGAAGGAGGTTGGGACT 59.598 55.000 0.00 0.00 0.00 3.85
1385 1414 3.553095 AAGGAGGTTGGGACTGCGC 62.553 63.158 0.00 0.00 0.00 6.09
1387 1416 4.329545 GAGGTTGGGACTGCGCCA 62.330 66.667 4.18 0.00 0.00 5.69
1429 1461 1.002011 GAGGGGCAACTTCTGGACC 60.002 63.158 0.00 0.00 0.00 4.46
1539 1571 2.853914 GGCGTCGCTGTTCTGAAC 59.146 61.111 18.11 13.49 0.00 3.18
1580 1612 4.373116 GGCCAGTCGGTTGAGCGA 62.373 66.667 0.00 0.61 33.28 4.93
1587 1627 0.452784 GTCGGTTGAGCGACATTTGC 60.453 55.000 25.30 2.49 35.46 3.68
1611 1651 1.828595 GTTGGTTGGTTGGTTTCTGGT 59.171 47.619 0.00 0.00 0.00 4.00
1614 1654 2.291930 TGGTTGGTTGGTTTCTGGTTCT 60.292 45.455 0.00 0.00 0.00 3.01
1615 1655 2.100749 GGTTGGTTGGTTTCTGGTTCTG 59.899 50.000 0.00 0.00 0.00 3.02
1617 1657 1.328279 GGTTGGTTTCTGGTTCTGGG 58.672 55.000 0.00 0.00 0.00 4.45
1618 1658 1.411074 GGTTGGTTTCTGGTTCTGGGT 60.411 52.381 0.00 0.00 0.00 4.51
1619 1659 1.954382 GTTGGTTTCTGGTTCTGGGTC 59.046 52.381 0.00 0.00 0.00 4.46
1620 1660 0.107831 TGGTTTCTGGTTCTGGGTCG 59.892 55.000 0.00 0.00 0.00 4.79
1621 1661 0.108019 GGTTTCTGGTTCTGGGTCGT 59.892 55.000 0.00 0.00 0.00 4.34
1622 1662 1.226746 GTTTCTGGTTCTGGGTCGTG 58.773 55.000 0.00 0.00 0.00 4.35
1623 1663 0.834612 TTTCTGGTTCTGGGTCGTGT 59.165 50.000 0.00 0.00 0.00 4.49
1624 1664 0.105964 TTCTGGTTCTGGGTCGTGTG 59.894 55.000 0.00 0.00 0.00 3.82
1628 1668 1.227556 GTTCTGGGTCGTGTGCTGT 60.228 57.895 0.00 0.00 0.00 4.40
1637 1677 2.633657 GTGTGCTGTGCTGTTCCG 59.366 61.111 0.00 0.00 0.00 4.30
1638 1678 2.591429 TGTGCTGTGCTGTTCCGG 60.591 61.111 0.00 0.00 0.00 5.14
1665 1705 1.300931 CTACGTGGCCGGATGGATG 60.301 63.158 5.05 0.00 38.78 3.51
1666 1706 2.715532 CTACGTGGCCGGATGGATGG 62.716 65.000 5.05 0.00 38.78 3.51
1667 1707 3.860605 CGTGGCCGGATGGATGGA 61.861 66.667 5.05 0.00 37.49 3.41
1668 1708 2.839098 GTGGCCGGATGGATGGAT 59.161 61.111 5.05 0.00 37.49 3.41
1669 1709 1.601759 GTGGCCGGATGGATGGATG 60.602 63.158 5.05 0.00 37.49 3.51
1670 1710 2.034687 GGCCGGATGGATGGATGG 59.965 66.667 5.05 0.00 37.49 3.51
1671 1711 2.528818 GGCCGGATGGATGGATGGA 61.529 63.158 5.05 0.00 37.49 3.41
1672 1712 1.687612 GCCGGATGGATGGATGGAT 59.312 57.895 5.05 0.00 37.49 3.41
1673 1713 0.679002 GCCGGATGGATGGATGGATG 60.679 60.000 5.05 0.00 37.49 3.51
1674 1714 0.034767 CCGGATGGATGGATGGATGG 60.035 60.000 0.00 0.00 37.49 3.51
1675 1715 0.986527 CGGATGGATGGATGGATGGA 59.013 55.000 0.00 0.00 0.00 3.41
1676 1716 1.562942 CGGATGGATGGATGGATGGAT 59.437 52.381 0.00 0.00 0.00 3.41
1677 1717 2.421107 CGGATGGATGGATGGATGGATC 60.421 54.545 0.00 0.00 0.00 3.36
1678 1718 2.579400 GGATGGATGGATGGATGGATCA 59.421 50.000 0.00 0.00 0.00 2.92
1679 1719 3.618351 GATGGATGGATGGATGGATCAC 58.382 50.000 0.00 0.00 0.00 3.06
1680 1720 1.706866 TGGATGGATGGATGGATCACC 59.293 52.381 0.00 0.00 0.00 4.02
1681 1721 1.991070 GGATGGATGGATGGATCACCT 59.009 52.381 0.00 0.00 37.04 4.00
1682 1722 2.290768 GGATGGATGGATGGATCACCTG 60.291 54.545 0.00 0.00 37.04 4.00
1683 1723 0.475475 TGGATGGATGGATCACCTGC 59.525 55.000 0.00 0.00 37.04 4.85
1684 1724 0.769873 GGATGGATGGATCACCTGCT 59.230 55.000 0.00 0.00 37.04 4.24
1809 1865 2.414161 GGCTCGTCCATTTTTGTACAGC 60.414 50.000 0.00 0.00 34.01 4.40
1821 1877 2.584492 TGTACAGCACAGATCATCGG 57.416 50.000 0.00 0.00 31.89 4.18
1864 1920 1.619207 GACTCGATCGCGTTGTTCG 59.381 57.895 12.63 11.27 40.37 3.95
1865 1921 1.063951 GACTCGATCGCGTTGTTCGT 61.064 55.000 12.63 0.00 40.03 3.85
1887 1943 0.041926 GTTTGTTCGTTTCCCCGTCG 60.042 55.000 0.00 0.00 0.00 5.12
1889 1945 3.417224 GTTCGTTTCCCCGTCGCC 61.417 66.667 0.00 0.00 0.00 5.54
1909 1965 2.420022 CCATCGAACTGGTGGATGTTTC 59.580 50.000 15.19 0.00 36.65 2.78
1963 2025 0.447011 GTTGCATCTGACAGCTGAGC 59.553 55.000 23.35 12.52 0.00 4.26
1971 2033 4.787871 ACAGCTGAGCCTGTCAAC 57.212 55.556 23.35 0.00 42.10 3.18
2005 2074 4.822036 TTTTGACCCGAACATTGTACAG 57.178 40.909 0.00 0.00 0.00 2.74
2006 2075 1.803334 TGACCCGAACATTGTACAGC 58.197 50.000 0.00 0.00 0.00 4.40
2036 2105 2.719798 CGTGTTGGTTTTGCTTCAGAG 58.280 47.619 0.00 0.00 0.00 3.35
2046 2115 0.251474 TGCTTCAGAGGCAGGCAAAT 60.251 50.000 2.39 0.00 34.56 2.32
2047 2116 1.004628 TGCTTCAGAGGCAGGCAAATA 59.995 47.619 2.39 0.00 34.56 1.40
2059 2129 3.433274 GCAGGCAAATAGGAAGCAAAAAC 59.567 43.478 0.00 0.00 0.00 2.43
2060 2130 3.674753 CAGGCAAATAGGAAGCAAAAACG 59.325 43.478 0.00 0.00 0.00 3.60
2062 2132 4.220602 AGGCAAATAGGAAGCAAAAACGAT 59.779 37.500 0.00 0.00 0.00 3.73
2063 2133 4.327087 GGCAAATAGGAAGCAAAAACGATG 59.673 41.667 0.00 0.00 0.00 3.84
2065 2135 5.633182 GCAAATAGGAAGCAAAAACGATGAA 59.367 36.000 0.00 0.00 0.00 2.57
2066 2136 6.399986 GCAAATAGGAAGCAAAAACGATGAAC 60.400 38.462 0.00 0.00 0.00 3.18
2067 2137 5.957842 ATAGGAAGCAAAAACGATGAACA 57.042 34.783 0.00 0.00 0.00 3.18
2068 2138 3.964909 AGGAAGCAAAAACGATGAACAC 58.035 40.909 0.00 0.00 0.00 3.32
2070 2140 3.243401 GGAAGCAAAAACGATGAACACCT 60.243 43.478 0.00 0.00 0.00 4.00
2071 2141 4.359706 GAAGCAAAAACGATGAACACCTT 58.640 39.130 0.00 0.00 0.00 3.50
2072 2142 4.385358 AGCAAAAACGATGAACACCTTT 57.615 36.364 0.00 0.00 0.00 3.11
2073 2143 4.754322 AGCAAAAACGATGAACACCTTTT 58.246 34.783 0.00 0.00 0.00 2.27
2074 2144 4.803613 AGCAAAAACGATGAACACCTTTTC 59.196 37.500 0.00 0.00 0.00 2.29
2075 2145 4.317069 GCAAAAACGATGAACACCTTTTCG 60.317 41.667 0.00 0.00 35.99 3.46
2076 2146 2.681152 AACGATGAACACCTTTTCGC 57.319 45.000 0.00 0.00 33.30 4.70
2077 2147 1.588674 ACGATGAACACCTTTTCGCA 58.411 45.000 0.00 0.00 33.30 5.10
2078 2148 1.944024 ACGATGAACACCTTTTCGCAA 59.056 42.857 0.00 0.00 33.30 4.85
2079 2149 2.356382 ACGATGAACACCTTTTCGCAAA 59.644 40.909 0.00 0.00 33.30 3.68
2080 2150 3.181495 ACGATGAACACCTTTTCGCAAAA 60.181 39.130 0.00 0.00 33.30 2.44
2081 2151 3.794028 CGATGAACACCTTTTCGCAAAAA 59.206 39.130 0.00 0.00 33.42 1.94
2106 2176 9.481340 AAAAGAAAGAAATAAAAGATGAGCACC 57.519 29.630 0.00 0.00 0.00 5.01
2107 2177 8.414629 AAGAAAGAAATAAAAGATGAGCACCT 57.585 30.769 0.00 0.00 0.00 4.00
2108 2178 9.520515 AAGAAAGAAATAAAAGATGAGCACCTA 57.479 29.630 0.00 0.00 0.00 3.08
2109 2179 9.171877 AGAAAGAAATAAAAGATGAGCACCTAG 57.828 33.333 0.00 0.00 0.00 3.02
2131 2317 4.932200 AGTAGAGCTCCGAAACATCAAAAG 59.068 41.667 10.93 0.00 0.00 2.27
2171 2364 0.679505 TCTTGAACACCAGGGACGAG 59.320 55.000 0.00 0.00 0.00 4.18
2173 2366 2.047179 GAACACCAGGGACGAGCC 60.047 66.667 0.00 0.00 0.00 4.70
2186 2380 1.137404 CGAGCCTTCGCCATTTTGG 59.863 57.895 0.00 0.00 40.36 3.28
2197 2391 1.205417 GCCATTTTGGGACCATCACAG 59.795 52.381 0.00 0.00 38.19 3.66
2207 2401 2.814336 GGACCATCACAGAACTGGTTTC 59.186 50.000 6.76 0.00 43.23 2.78
2209 2403 3.882888 GACCATCACAGAACTGGTTTCAA 59.117 43.478 6.76 0.00 43.23 2.69
2238 2432 4.083003 TGTTTACATCCTTCGCCATTTGAC 60.083 41.667 0.00 0.00 0.00 3.18
2256 2450 2.670905 TGACGCGAATTTGTGACCTATG 59.329 45.455 15.93 0.00 0.00 2.23
2261 2455 4.491924 CGCGAATTTGTGACCTATGTACAC 60.492 45.833 0.00 0.00 35.45 2.90
2262 2456 4.390603 GCGAATTTGTGACCTATGTACACA 59.609 41.667 0.00 0.00 41.70 3.72
2295 2493 2.429610 CGTTTTCTCTTCGGGGATCCTA 59.570 50.000 12.58 0.00 0.00 2.94
2304 2502 1.704628 TCGGGGATCCTATACCGTACA 59.295 52.381 21.86 5.30 46.06 2.90
2305 2503 2.108075 TCGGGGATCCTATACCGTACAA 59.892 50.000 21.86 4.99 46.06 2.41
2396 2634 3.213506 CTTTGGACATGTCACAGTTCCA 58.786 45.455 26.47 11.85 0.00 3.53
2559 2805 3.429141 TCGTCCAGCGAGTCCGAC 61.429 66.667 0.00 0.00 45.68 4.79
2649 2895 1.366854 GAAACCCCGCCTTCATCGAC 61.367 60.000 0.00 0.00 0.00 4.20
2670 2916 2.180769 CATCTCGACGCGGTTCCA 59.819 61.111 12.47 0.00 0.00 3.53
2673 2919 4.421479 CTCGACGCGGTTCCAGCT 62.421 66.667 12.47 0.00 0.00 4.24
2677 2923 1.141019 GACGCGGTTCCAGCTGATA 59.859 57.895 17.39 0.00 0.00 2.15
2678 2924 0.459585 GACGCGGTTCCAGCTGATAA 60.460 55.000 17.39 6.31 0.00 1.75
2682 2928 2.565841 GCGGTTCCAGCTGATAAATCT 58.434 47.619 17.39 0.00 0.00 2.40
2685 2931 2.620585 GGTTCCAGCTGATAAATCTGGC 59.379 50.000 17.39 0.00 45.25 4.85
2691 2937 2.025981 AGCTGATAAATCTGGCACCACA 60.026 45.455 0.00 0.00 0.00 4.17
2695 2941 5.172687 TGATAAATCTGGCACCACACTAA 57.827 39.130 0.00 0.00 0.00 2.24
2697 2943 2.949177 AATCTGGCACCACACTAACA 57.051 45.000 0.00 0.00 0.00 2.41
2698 2944 2.479566 ATCTGGCACCACACTAACAG 57.520 50.000 0.00 0.00 0.00 3.16
2699 2945 0.396435 TCTGGCACCACACTAACAGG 59.604 55.000 0.00 0.00 0.00 4.00
2743 2989 2.748268 GCTTCGAGCAGAACAGAGG 58.252 57.895 2.53 0.00 41.89 3.69
2744 2990 0.037790 GCTTCGAGCAGAACAGAGGT 60.038 55.000 2.53 0.00 41.89 3.85
2745 2991 1.707632 CTTCGAGCAGAACAGAGGTG 58.292 55.000 0.00 0.00 34.66 4.00
2748 2994 0.318441 CGAGCAGAACAGAGGTGGAA 59.682 55.000 0.00 0.00 0.00 3.53
2786 3032 7.110155 TCCTCTTTCACTTGTTTAACTGACTT 58.890 34.615 0.00 0.00 0.00 3.01
2802 3048 0.106519 ACTTTTGACTGCTGGGCTGT 60.107 50.000 1.92 1.92 43.03 4.40
2808 3054 1.228063 ACTGCTGGGCTGTTCTGTG 60.228 57.895 0.00 0.00 37.43 3.66
2820 3066 3.133721 GCTGTTCTGTGATGGAGGAGTAT 59.866 47.826 0.00 0.00 0.00 2.12
2826 3072 4.080919 TCTGTGATGGAGGAGTATTTGTGG 60.081 45.833 0.00 0.00 0.00 4.17
2827 3073 3.587061 TGTGATGGAGGAGTATTTGTGGT 59.413 43.478 0.00 0.00 0.00 4.16
2828 3074 4.192317 GTGATGGAGGAGTATTTGTGGTC 58.808 47.826 0.00 0.00 0.00 4.02
2829 3075 3.843619 TGATGGAGGAGTATTTGTGGTCA 59.156 43.478 0.00 0.00 0.00 4.02
2830 3076 3.981071 TGGAGGAGTATTTGTGGTCAG 57.019 47.619 0.00 0.00 0.00 3.51
2831 3077 2.027192 TGGAGGAGTATTTGTGGTCAGC 60.027 50.000 0.00 0.00 0.00 4.26
2832 3078 2.271800 GAGGAGTATTTGTGGTCAGCG 58.728 52.381 0.00 0.00 0.00 5.18
2833 3079 1.623811 AGGAGTATTTGTGGTCAGCGT 59.376 47.619 0.00 0.00 0.00 5.07
2834 3080 2.038557 AGGAGTATTTGTGGTCAGCGTT 59.961 45.455 0.00 0.00 0.00 4.84
2835 3081 2.159627 GGAGTATTTGTGGTCAGCGTTG 59.840 50.000 0.00 0.00 0.00 4.10
2836 3082 3.064207 GAGTATTTGTGGTCAGCGTTGA 58.936 45.455 0.00 0.00 0.00 3.18
2848 3094 4.418013 TCAGCGTTGACACCATATTTTG 57.582 40.909 0.00 0.00 0.00 2.44
2849 3095 4.068599 TCAGCGTTGACACCATATTTTGA 58.931 39.130 0.00 0.00 0.00 2.69
2892 3138 2.165998 GGAGAATGTGGAGCTGCTTTT 58.834 47.619 6.82 0.00 0.00 2.27
2903 3149 2.819608 GAGCTGCTTTTATCACCACCAA 59.180 45.455 2.53 0.00 0.00 3.67
2964 3211 3.903714 TGAAATGAGAGTGAGGTCTCCAA 59.096 43.478 0.00 0.00 42.16 3.53
2974 3221 1.208293 GAGGTCTCCAAGCACCCTAAG 59.792 57.143 0.00 0.00 32.45 2.18
2975 3222 1.203313 AGGTCTCCAAGCACCCTAAGA 60.203 52.381 0.00 0.00 32.45 2.10
3006 3257 3.050275 GTGGACAAGCAGACGCCC 61.050 66.667 0.00 0.00 39.83 6.13
3043 3294 2.092753 CACCTGTAGCATGGTTCCAGAT 60.093 50.000 19.88 5.77 33.75 2.90
3058 3309 2.490509 TCCAGATTCAACGTCTTCGCTA 59.509 45.455 0.00 0.00 41.18 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.175760 TTCAGCTTGCCGGCTACTAG 59.824 55.000 29.70 19.33 41.00 2.57
7 8 2.436646 GCTTCAGCTTGCCGGCTA 60.437 61.111 29.70 20.51 41.00 3.93
65 66 0.960364 TTTGAGAATGCCGCCTGGAC 60.960 55.000 0.00 0.00 37.49 4.02
66 67 0.960364 GTTTGAGAATGCCGCCTGGA 60.960 55.000 0.00 0.00 37.49 3.86
94 95 1.077285 CCTCCTGCATCATGCCACA 60.077 57.895 7.30 0.00 44.23 4.17
96 97 1.530283 CTCCTCCTGCATCATGCCA 59.470 57.895 7.30 0.00 44.23 4.92
97 98 1.897615 GCTCCTCCTGCATCATGCC 60.898 63.158 7.30 0.00 44.23 4.40
101 102 0.757512 GATCTGCTCCTCCTGCATCA 59.242 55.000 0.00 0.00 39.86 3.07
102 103 0.035176 GGATCTGCTCCTCCTGCATC 59.965 60.000 0.00 0.00 41.29 3.91
103 104 1.756408 CGGATCTGCTCCTCCTGCAT 61.756 60.000 0.00 0.00 42.47 3.96
105 106 2.086251 CTCGGATCTGCTCCTCCTGC 62.086 65.000 0.00 0.00 42.47 4.85
121 122 1.337703 CCTTCCTGCAGATCTCTCTCG 59.662 57.143 17.39 0.00 0.00 4.04
127 128 3.003027 TGCTCCTTCCTGCAGATCT 57.997 52.632 17.39 0.00 34.84 2.75
148 149 2.207924 ACCCTCGCCGACTTTGACT 61.208 57.895 0.00 0.00 0.00 3.41
150 151 2.342279 CACCCTCGCCGACTTTGA 59.658 61.111 0.00 0.00 0.00 2.69
160 161 3.177194 TTCACCACTGCCACCCTCG 62.177 63.158 0.00 0.00 0.00 4.63
168 169 1.374758 CCGGTCTCTTCACCACTGC 60.375 63.158 0.00 0.00 36.01 4.40
171 172 1.592223 CTCCCGGTCTCTTCACCAC 59.408 63.158 0.00 0.00 36.01 4.16
172 173 1.609501 CCTCCCGGTCTCTTCACCA 60.610 63.158 0.00 0.00 36.01 4.17
175 176 1.258445 GCTTCCTCCCGGTCTCTTCA 61.258 60.000 0.00 0.00 0.00 3.02
178 179 2.756283 CGCTTCCTCCCGGTCTCT 60.756 66.667 0.00 0.00 0.00 3.10
180 181 3.899545 TTCCGCTTCCTCCCGGTCT 62.900 63.158 0.00 0.00 44.63 3.85
182 183 2.926242 TTTCCGCTTCCTCCCGGT 60.926 61.111 0.00 0.00 44.63 5.28
184 185 1.153549 CTCTTTCCGCTTCCTCCCG 60.154 63.158 0.00 0.00 0.00 5.14
187 188 2.744741 CCTTTTCTCTTTCCGCTTCCTC 59.255 50.000 0.00 0.00 0.00 3.71
193 194 1.235281 ACCGCCTTTTCTCTTTCCGC 61.235 55.000 0.00 0.00 0.00 5.54
199 200 1.073199 CCACCACCGCCTTTTCTCT 59.927 57.895 0.00 0.00 0.00 3.10
208 209 3.124921 CGTTCCATCCACCACCGC 61.125 66.667 0.00 0.00 0.00 5.68
219 220 1.248785 CCTCCTTCGTCTCCGTTCCA 61.249 60.000 0.00 0.00 35.01 3.53
220 221 1.249469 ACCTCCTTCGTCTCCGTTCC 61.249 60.000 0.00 0.00 35.01 3.62
222 223 1.046204 AAACCTCCTTCGTCTCCGTT 58.954 50.000 0.00 0.00 35.01 4.44
228 229 0.599204 TGCGTCAAACCTCCTTCGTC 60.599 55.000 0.00 0.00 0.00 4.20
231 232 2.401017 GTTTGCGTCAAACCTCCTTC 57.599 50.000 18.64 0.00 45.32 3.46
286 287 2.073117 TCAACGTGCGCTATCTTCAA 57.927 45.000 9.73 0.00 0.00 2.69
289 290 0.721718 GCTTCAACGTGCGCTATCTT 59.278 50.000 9.73 0.00 0.00 2.40
292 293 1.970917 GCTGCTTCAACGTGCGCTAT 61.971 55.000 9.73 0.00 0.00 2.97
293 294 2.667318 GCTGCTTCAACGTGCGCTA 61.667 57.895 9.73 0.00 0.00 4.26
294 295 4.017877 GCTGCTTCAACGTGCGCT 62.018 61.111 9.73 0.00 0.00 5.92
298 299 2.425773 GCGTGCTGCTTCAACGTG 60.426 61.111 11.11 0.00 41.73 4.49
299 300 2.468670 TTGCGTGCTGCTTCAACGT 61.469 52.632 11.11 0.00 46.63 3.99
312 313 0.609131 CTTCATTGGAGGGGTTGCGT 60.609 55.000 0.00 0.00 0.00 5.24
337 338 2.411290 CTCGCCGGAGCTCTTCTC 59.589 66.667 14.64 0.00 41.15 2.87
349 350 1.696832 GGTTCGATGAACTGCTCGCC 61.697 60.000 9.32 0.00 41.70 5.54
370 371 1.071542 GCCATCTCTTCCCCTAAGCTC 59.928 57.143 0.00 0.00 34.97 4.09
378 379 0.537188 TTGTCTCGCCATCTCTTCCC 59.463 55.000 0.00 0.00 0.00 3.97
382 383 2.093764 CCTTCTTTGTCTCGCCATCTCT 60.094 50.000 0.00 0.00 0.00 3.10
387 388 0.756294 TCACCTTCTTTGTCTCGCCA 59.244 50.000 0.00 0.00 0.00 5.69
388 389 2.003301 GATCACCTTCTTTGTCTCGCC 58.997 52.381 0.00 0.00 0.00 5.54
391 392 4.020662 ACCTCAGATCACCTTCTTTGTCTC 60.021 45.833 0.00 0.00 0.00 3.36
397 398 4.982241 TTGAACCTCAGATCACCTTCTT 57.018 40.909 0.00 0.00 0.00 2.52
406 407 2.026449 CCTCCTGCTTTGAACCTCAGAT 60.026 50.000 0.00 0.00 0.00 2.90
417 419 4.729918 CTGCCCGCCTCCTGCTTT 62.730 66.667 0.00 0.00 38.05 3.51
429 431 2.746277 CACCTTACACGCCTGCCC 60.746 66.667 0.00 0.00 0.00 5.36
432 434 2.746277 GCCCACCTTACACGCCTG 60.746 66.667 0.00 0.00 0.00 4.85
435 437 2.573609 ATCTCGCCCACCTTACACGC 62.574 60.000 0.00 0.00 0.00 5.34
438 440 1.066430 GTCAATCTCGCCCACCTTACA 60.066 52.381 0.00 0.00 0.00 2.41
440 442 0.539986 GGTCAATCTCGCCCACCTTA 59.460 55.000 0.00 0.00 0.00 2.69
441 443 1.201429 AGGTCAATCTCGCCCACCTT 61.201 55.000 0.00 0.00 33.41 3.50
462 464 1.303643 CTTCCTGGGCCTTGGTGAC 60.304 63.158 4.53 0.00 0.00 3.67
465 467 2.234296 CCTCTTCCTGGGCCTTGGT 61.234 63.158 4.53 0.00 0.00 3.67
468 470 3.721706 CGCCTCTTCCTGGGCCTT 61.722 66.667 4.53 0.00 45.01 4.35
472 474 3.382803 CTCTGCGCCTCTTCCTGGG 62.383 68.421 4.18 0.00 0.00 4.45
485 487 2.125391 TGGCTCATGCGTCTCTGC 60.125 61.111 0.00 0.00 40.82 4.26
489 491 2.581354 GACCTGGCTCATGCGTCT 59.419 61.111 0.00 0.00 40.82 4.18
517 519 4.821589 CTCCGCTTCCCACTCGCC 62.822 72.222 0.00 0.00 0.00 5.54
596 602 3.884318 GAGATGGCTCCTCCTCCC 58.116 66.667 0.00 0.00 35.01 4.30
607 613 1.002888 AGCATTATCGGCAGGAGATGG 59.997 52.381 0.00 0.00 0.00 3.51
609 615 1.277557 GGAGCATTATCGGCAGGAGAT 59.722 52.381 0.00 0.00 0.00 2.75
610 616 0.681733 GGAGCATTATCGGCAGGAGA 59.318 55.000 0.00 0.00 0.00 3.71
611 617 0.321122 GGGAGCATTATCGGCAGGAG 60.321 60.000 0.00 0.00 0.00 3.69
612 618 1.754745 GGGAGCATTATCGGCAGGA 59.245 57.895 0.00 0.00 0.00 3.86
613 619 1.669115 CGGGAGCATTATCGGCAGG 60.669 63.158 0.00 0.00 0.00 4.85
614 620 0.036952 ATCGGGAGCATTATCGGCAG 60.037 55.000 0.00 0.00 0.00 4.85
615 621 0.396435 AATCGGGAGCATTATCGGCA 59.604 50.000 0.00 0.00 0.00 5.69
616 622 1.079503 GAATCGGGAGCATTATCGGC 58.920 55.000 0.00 0.00 0.00 5.54
617 623 1.276421 AGGAATCGGGAGCATTATCGG 59.724 52.381 0.00 0.00 0.00 4.18
618 624 2.029020 TGAGGAATCGGGAGCATTATCG 60.029 50.000 0.00 0.00 0.00 2.92
619 625 3.594134 CTGAGGAATCGGGAGCATTATC 58.406 50.000 0.00 0.00 0.00 1.75
620 626 2.289945 GCTGAGGAATCGGGAGCATTAT 60.290 50.000 0.00 0.00 0.00 1.28
621 627 1.070758 GCTGAGGAATCGGGAGCATTA 59.929 52.381 0.00 0.00 0.00 1.90
622 628 0.179034 GCTGAGGAATCGGGAGCATT 60.179 55.000 0.00 0.00 0.00 3.56
623 629 1.449353 GCTGAGGAATCGGGAGCAT 59.551 57.895 0.00 0.00 0.00 3.79
624 630 2.735772 GGCTGAGGAATCGGGAGCA 61.736 63.158 0.00 0.00 0.00 4.26
625 631 2.049627 ATGGCTGAGGAATCGGGAGC 62.050 60.000 0.00 0.00 0.00 4.70
626 632 0.034616 GATGGCTGAGGAATCGGGAG 59.965 60.000 0.00 0.00 0.00 4.30
627 633 0.690744 TGATGGCTGAGGAATCGGGA 60.691 55.000 0.00 0.00 0.00 5.14
628 634 0.399454 ATGATGGCTGAGGAATCGGG 59.601 55.000 0.00 0.00 0.00 5.14
629 635 1.202734 ACATGATGGCTGAGGAATCGG 60.203 52.381 0.00 0.00 0.00 4.18
630 636 2.251409 ACATGATGGCTGAGGAATCG 57.749 50.000 0.00 0.00 0.00 3.34
631 637 3.285484 ACAACATGATGGCTGAGGAATC 58.715 45.455 7.95 0.00 0.00 2.52
632 638 3.377253 ACAACATGATGGCTGAGGAAT 57.623 42.857 7.95 0.00 0.00 3.01
633 639 2.885135 ACAACATGATGGCTGAGGAA 57.115 45.000 7.95 0.00 0.00 3.36
634 640 2.840038 ACTACAACATGATGGCTGAGGA 59.160 45.455 7.95 0.00 0.00 3.71
635 641 3.272574 ACTACAACATGATGGCTGAGG 57.727 47.619 7.95 0.00 0.00 3.86
636 642 4.456911 ACAAACTACAACATGATGGCTGAG 59.543 41.667 7.95 2.12 0.00 3.35
637 643 4.397420 ACAAACTACAACATGATGGCTGA 58.603 39.130 7.95 0.00 0.00 4.26
638 644 4.771590 ACAAACTACAACATGATGGCTG 57.228 40.909 7.95 0.00 0.00 4.85
639 645 4.826733 TGAACAAACTACAACATGATGGCT 59.173 37.500 7.95 0.00 0.00 4.75
640 646 5.119931 TGAACAAACTACAACATGATGGC 57.880 39.130 7.95 0.00 0.00 4.40
641 647 7.481483 CGTAATGAACAAACTACAACATGATGG 59.519 37.037 7.95 0.00 0.00 3.51
642 648 7.007367 GCGTAATGAACAAACTACAACATGATG 59.993 37.037 0.00 0.00 0.00 3.07
643 649 7.021196 GCGTAATGAACAAACTACAACATGAT 58.979 34.615 0.00 0.00 0.00 2.45
644 650 6.367421 GCGTAATGAACAAACTACAACATGA 58.633 36.000 0.00 0.00 0.00 3.07
645 651 5.567534 GGCGTAATGAACAAACTACAACATG 59.432 40.000 0.00 0.00 0.00 3.21
646 652 5.472137 AGGCGTAATGAACAAACTACAACAT 59.528 36.000 0.00 0.00 0.00 2.71
647 653 4.817464 AGGCGTAATGAACAAACTACAACA 59.183 37.500 0.00 0.00 0.00 3.33
648 654 5.352643 AGGCGTAATGAACAAACTACAAC 57.647 39.130 0.00 0.00 0.00 3.32
649 655 4.453136 GGAGGCGTAATGAACAAACTACAA 59.547 41.667 0.00 0.00 0.00 2.41
650 656 3.998341 GGAGGCGTAATGAACAAACTACA 59.002 43.478 0.00 0.00 0.00 2.74
651 657 3.998341 TGGAGGCGTAATGAACAAACTAC 59.002 43.478 0.00 0.00 0.00 2.73
652 658 3.998341 GTGGAGGCGTAATGAACAAACTA 59.002 43.478 0.00 0.00 0.00 2.24
653 659 2.812011 GTGGAGGCGTAATGAACAAACT 59.188 45.455 0.00 0.00 0.00 2.66
654 660 2.812011 AGTGGAGGCGTAATGAACAAAC 59.188 45.455 0.00 0.00 0.00 2.93
655 661 3.071479 GAGTGGAGGCGTAATGAACAAA 58.929 45.455 0.00 0.00 0.00 2.83
656 662 2.037902 TGAGTGGAGGCGTAATGAACAA 59.962 45.455 0.00 0.00 0.00 2.83
657 663 1.621317 TGAGTGGAGGCGTAATGAACA 59.379 47.619 0.00 0.00 0.00 3.18
658 664 2.380084 TGAGTGGAGGCGTAATGAAC 57.620 50.000 0.00 0.00 0.00 3.18
659 665 2.037902 TGTTGAGTGGAGGCGTAATGAA 59.962 45.455 0.00 0.00 0.00 2.57
660 666 1.621317 TGTTGAGTGGAGGCGTAATGA 59.379 47.619 0.00 0.00 0.00 2.57
661 667 2.002586 CTGTTGAGTGGAGGCGTAATG 58.997 52.381 0.00 0.00 0.00 1.90
662 668 1.676014 GCTGTTGAGTGGAGGCGTAAT 60.676 52.381 0.00 0.00 0.00 1.89
663 669 0.320421 GCTGTTGAGTGGAGGCGTAA 60.320 55.000 0.00 0.00 0.00 3.18
664 670 1.292223 GCTGTTGAGTGGAGGCGTA 59.708 57.895 0.00 0.00 0.00 4.42
665 671 2.031163 GCTGTTGAGTGGAGGCGT 59.969 61.111 0.00 0.00 0.00 5.68
666 672 2.031012 TGCTGTTGAGTGGAGGCG 59.969 61.111 0.00 0.00 0.00 5.52
667 673 0.819259 TTGTGCTGTTGAGTGGAGGC 60.819 55.000 0.00 0.00 0.00 4.70
668 674 1.334869 GTTTGTGCTGTTGAGTGGAGG 59.665 52.381 0.00 0.00 0.00 4.30
669 675 2.016318 TGTTTGTGCTGTTGAGTGGAG 58.984 47.619 0.00 0.00 0.00 3.86
670 676 2.121291 TGTTTGTGCTGTTGAGTGGA 57.879 45.000 0.00 0.00 0.00 4.02
671 677 2.937469 TTGTTTGTGCTGTTGAGTGG 57.063 45.000 0.00 0.00 0.00 4.00
672 678 4.095410 TCTTTGTTTGTGCTGTTGAGTG 57.905 40.909 0.00 0.00 0.00 3.51
673 679 4.641989 AGATCTTTGTTTGTGCTGTTGAGT 59.358 37.500 0.00 0.00 0.00 3.41
674 680 5.179045 AGATCTTTGTTTGTGCTGTTGAG 57.821 39.130 0.00 0.00 0.00 3.02
675 681 5.581126 AAGATCTTTGTTTGTGCTGTTGA 57.419 34.783 0.88 0.00 0.00 3.18
676 682 6.651755 AAAAGATCTTTGTTTGTGCTGTTG 57.348 33.333 21.15 0.00 32.36 3.33
677 683 6.472163 CGTAAAAGATCTTTGTTTGTGCTGTT 59.528 34.615 21.15 3.89 32.36 3.16
678 684 5.971202 CGTAAAAGATCTTTGTTTGTGCTGT 59.029 36.000 21.15 4.39 32.36 4.40
679 685 5.399301 CCGTAAAAGATCTTTGTTTGTGCTG 59.601 40.000 21.15 2.26 32.36 4.41
680 686 5.519722 CCGTAAAAGATCTTTGTTTGTGCT 58.480 37.500 21.15 5.80 32.36 4.40
681 687 4.148174 GCCGTAAAAGATCTTTGTTTGTGC 59.852 41.667 21.15 14.56 32.36 4.57
682 688 5.519722 AGCCGTAAAAGATCTTTGTTTGTG 58.480 37.500 21.15 9.30 32.36 3.33
683 689 5.767816 AGCCGTAAAAGATCTTTGTTTGT 57.232 34.783 21.15 7.92 32.36 2.83
684 690 7.646130 TGTTTAGCCGTAAAAGATCTTTGTTTG 59.354 33.333 21.15 11.53 32.36 2.93
685 691 7.708998 TGTTTAGCCGTAAAAGATCTTTGTTT 58.291 30.769 21.15 8.65 32.36 2.83
686 692 7.266922 TGTTTAGCCGTAAAAGATCTTTGTT 57.733 32.000 21.15 9.36 32.36 2.83
687 693 6.567891 GCTGTTTAGCCGTAAAAGATCTTTGT 60.568 38.462 21.15 13.24 44.33 2.83
688 694 5.795441 GCTGTTTAGCCGTAAAAGATCTTTG 59.205 40.000 21.15 9.84 44.33 2.77
689 695 5.939457 GCTGTTTAGCCGTAAAAGATCTTT 58.061 37.500 15.11 15.11 44.33 2.52
690 696 5.547181 GCTGTTTAGCCGTAAAAGATCTT 57.453 39.130 0.88 0.88 44.33 2.40
704 710 2.354203 GGGACAGTCAGGAGCTGTTTAG 60.354 54.545 2.17 0.00 45.99 1.85
705 711 1.623811 GGGACAGTCAGGAGCTGTTTA 59.376 52.381 2.17 0.00 45.99 2.01
706 712 0.398318 GGGACAGTCAGGAGCTGTTT 59.602 55.000 2.17 0.00 45.99 2.83
707 713 1.484444 GGGGACAGTCAGGAGCTGTT 61.484 60.000 2.17 0.00 45.99 3.16
709 715 2.664081 GGGGGACAGTCAGGAGCTG 61.664 68.421 2.17 0.00 39.67 4.24
710 716 2.284995 GGGGGACAGTCAGGAGCT 60.285 66.667 2.17 0.00 0.00 4.09
711 717 3.775654 CGGGGGACAGTCAGGAGC 61.776 72.222 2.17 0.00 0.00 4.70
712 718 3.775654 GCGGGGGACAGTCAGGAG 61.776 72.222 2.17 0.00 0.00 3.69
713 719 4.631740 TGCGGGGGACAGTCAGGA 62.632 66.667 2.17 0.00 0.00 3.86
714 720 2.690653 TTTTGCGGGGGACAGTCAGG 62.691 60.000 2.17 0.00 0.00 3.86
715 721 0.821711 TTTTTGCGGGGGACAGTCAG 60.822 55.000 2.17 0.00 0.00 3.51
716 722 1.227664 TTTTTGCGGGGGACAGTCA 59.772 52.632 2.17 0.00 0.00 3.41
717 723 4.167597 TTTTTGCGGGGGACAGTC 57.832 55.556 0.00 0.00 0.00 3.51
734 740 9.651913 TTTTTCTCTTTGCAGTCAATAGTTTTT 57.348 25.926 0.00 0.00 31.33 1.94
759 765 1.876156 CTGCGGTCAAGAGCTCTTTTT 59.124 47.619 26.44 2.96 33.11 1.94
760 766 1.517242 CTGCGGTCAAGAGCTCTTTT 58.483 50.000 26.44 3.81 33.11 2.27
761 767 0.952984 GCTGCGGTCAAGAGCTCTTT 60.953 55.000 26.44 9.31 33.11 2.52
762 768 1.375268 GCTGCGGTCAAGAGCTCTT 60.375 57.895 23.49 23.49 36.45 2.85
763 769 2.264166 GCTGCGGTCAAGAGCTCT 59.736 61.111 11.45 11.45 0.00 4.09
764 770 2.817396 GGCTGCGGTCAAGAGCTC 60.817 66.667 5.27 5.27 33.03 4.09
791 797 0.394352 GATGATTGGCCCCGTTGAGT 60.394 55.000 0.00 0.00 0.00 3.41
852 858 1.306997 ATCGGATGGTGGGGTGAGT 60.307 57.895 0.00 0.00 0.00 3.41
988 999 2.516930 GGTGGTGGCGATGGGATG 60.517 66.667 0.00 0.00 0.00 3.51
989 1000 3.014538 TGGTGGTGGCGATGGGAT 61.015 61.111 0.00 0.00 0.00 3.85
990 1001 4.028490 GTGGTGGTGGCGATGGGA 62.028 66.667 0.00 0.00 0.00 4.37
1048 1071 1.663173 GTCTAGCTCGGAGGATGCC 59.337 63.158 7.20 0.00 0.00 4.40
1352 1381 1.966451 CCTTCTTGCCGTGGTGACC 60.966 63.158 0.00 0.00 0.00 4.02
1353 1382 0.951040 CTCCTTCTTGCCGTGGTGAC 60.951 60.000 0.00 0.00 0.00 3.67
1356 1385 1.705997 AACCTCCTTCTTGCCGTGGT 61.706 55.000 0.00 0.00 0.00 4.16
1357 1386 1.073199 AACCTCCTTCTTGCCGTGG 59.927 57.895 0.00 0.00 0.00 4.94
1367 1396 2.750350 CGCAGTCCCAACCTCCTT 59.250 61.111 0.00 0.00 0.00 3.36
1385 1414 1.153469 GCTTCTTCTCCTCGGCTGG 60.153 63.158 0.00 0.00 0.00 4.85
1386 1415 1.153469 GGCTTCTTCTCCTCGGCTG 60.153 63.158 0.00 0.00 0.00 4.85
1387 1416 2.716017 CGGCTTCTTCTCCTCGGCT 61.716 63.158 0.00 0.00 0.00 5.52
1389 1418 2.496817 CCGGCTTCTTCTCCTCGG 59.503 66.667 0.00 0.00 0.00 4.63
1394 1426 0.804156 CTCTTCGCCGGCTTCTTCTC 60.804 60.000 26.68 0.00 0.00 2.87
1580 1612 0.673437 CCAACCAACCGAGCAAATGT 59.327 50.000 0.00 0.00 0.00 2.71
1587 1627 1.066454 GAAACCAACCAACCAACCGAG 59.934 52.381 0.00 0.00 0.00 4.63
1589 1629 1.107945 AGAAACCAACCAACCAACCG 58.892 50.000 0.00 0.00 0.00 4.44
1611 1651 1.227527 CACAGCACACGACCCAGAA 60.228 57.895 0.00 0.00 0.00 3.02
1614 1654 3.860605 AGCACAGCACACGACCCA 61.861 61.111 0.00 0.00 0.00 4.51
1615 1655 3.349006 CAGCACAGCACACGACCC 61.349 66.667 0.00 0.00 0.00 4.46
1617 1657 1.276844 GAACAGCACAGCACACGAC 59.723 57.895 0.00 0.00 0.00 4.34
1618 1658 1.887242 GGAACAGCACAGCACACGA 60.887 57.895 0.00 0.00 0.00 4.35
1619 1659 2.633657 GGAACAGCACAGCACACG 59.366 61.111 0.00 0.00 0.00 4.49
1620 1660 2.633657 CGGAACAGCACAGCACAC 59.366 61.111 0.00 0.00 0.00 3.82
1621 1661 2.591429 CCGGAACAGCACAGCACA 60.591 61.111 0.00 0.00 0.00 4.57
1622 1662 2.280797 TCCGGAACAGCACAGCAC 60.281 61.111 0.00 0.00 0.00 4.40
1623 1663 2.031012 CTCCGGAACAGCACAGCA 59.969 61.111 5.23 0.00 0.00 4.41
1624 1664 3.426568 GCTCCGGAACAGCACAGC 61.427 66.667 5.23 0.00 36.82 4.40
1637 1677 4.208686 CCACGTAGGCTCCGCTCC 62.209 72.222 0.00 0.00 0.00 4.70
1656 1696 0.986527 TCCATCCATCCATCCATCCG 59.013 55.000 0.00 0.00 0.00 4.18
1665 1705 0.769873 AGCAGGTGATCCATCCATCC 59.230 55.000 0.00 0.00 35.89 3.51
1666 1706 1.698532 AGAGCAGGTGATCCATCCATC 59.301 52.381 0.00 0.00 35.89 3.51
1667 1707 1.420514 CAGAGCAGGTGATCCATCCAT 59.579 52.381 0.00 0.00 35.89 3.41
1668 1708 0.835276 CAGAGCAGGTGATCCATCCA 59.165 55.000 0.00 0.00 35.89 3.41
1669 1709 0.534652 GCAGAGCAGGTGATCCATCC 60.535 60.000 0.00 0.00 35.89 3.51
1670 1710 0.469070 AGCAGAGCAGGTGATCCATC 59.531 55.000 0.00 0.00 35.89 3.51
1671 1711 0.469070 GAGCAGAGCAGGTGATCCAT 59.531 55.000 0.00 0.00 35.89 3.41
1672 1712 1.903294 GAGCAGAGCAGGTGATCCA 59.097 57.895 0.00 0.00 35.89 3.41
1673 1713 1.227205 CGAGCAGAGCAGGTGATCC 60.227 63.158 0.00 0.00 0.00 3.36
1674 1714 0.527385 GACGAGCAGAGCAGGTGATC 60.527 60.000 0.00 0.00 0.00 2.92
1675 1715 0.969917 AGACGAGCAGAGCAGGTGAT 60.970 55.000 0.00 0.00 0.00 3.06
1676 1716 0.322546 TAGACGAGCAGAGCAGGTGA 60.323 55.000 0.00 0.00 0.00 4.02
1677 1717 0.528017 TTAGACGAGCAGAGCAGGTG 59.472 55.000 0.00 0.00 0.00 4.00
1678 1718 1.407258 GATTAGACGAGCAGAGCAGGT 59.593 52.381 0.00 0.00 0.00 4.00
1679 1719 1.269517 GGATTAGACGAGCAGAGCAGG 60.270 57.143 0.00 0.00 0.00 4.85
1680 1720 1.599171 CGGATTAGACGAGCAGAGCAG 60.599 57.143 0.00 0.00 0.00 4.24
1681 1721 0.382158 CGGATTAGACGAGCAGAGCA 59.618 55.000 0.00 0.00 0.00 4.26
1682 1722 0.318275 CCGGATTAGACGAGCAGAGC 60.318 60.000 0.00 0.00 0.00 4.09
1683 1723 0.318275 GCCGGATTAGACGAGCAGAG 60.318 60.000 5.05 0.00 0.00 3.35
1684 1724 1.734137 GCCGGATTAGACGAGCAGA 59.266 57.895 5.05 0.00 0.00 4.26
1792 1848 3.249799 TCTGTGCTGTACAAAAATGGACG 59.750 43.478 0.00 0.00 39.20 4.79
1809 1865 2.967599 TTGGAGACCGATGATCTGTG 57.032 50.000 0.00 0.00 0.00 3.66
1821 1877 2.159599 CGCAAGCTCTTTCATTGGAGAC 60.160 50.000 0.00 0.00 0.00 3.36
1864 1920 2.186891 CGGGGAAACGAACAAACAAAC 58.813 47.619 0.00 0.00 35.47 2.93
1865 1921 1.817447 ACGGGGAAACGAACAAACAAA 59.183 42.857 0.00 0.00 37.61 2.83
1887 1943 0.392998 ACATCCACCAGTTCGATGGC 60.393 55.000 4.93 0.00 44.80 4.40
1889 1945 2.420022 GGAAACATCCACCAGTTCGATG 59.580 50.000 0.00 0.00 39.44 3.84
1909 1965 2.842394 ATCTCGCCAGCACGACAAGG 62.842 60.000 0.00 0.00 37.09 3.61
1950 2006 1.970639 GACAGGCTCAGCTGTCAGA 59.029 57.895 14.67 0.00 46.49 3.27
1986 2055 2.147958 GCTGTACAATGTTCGGGTCAA 58.852 47.619 0.00 0.00 0.00 3.18
1988 2057 1.732259 CAGCTGTACAATGTTCGGGTC 59.268 52.381 5.25 0.00 0.00 4.46
1989 2058 1.610624 CCAGCTGTACAATGTTCGGGT 60.611 52.381 13.81 0.00 0.00 5.28
1990 2059 1.086696 CCAGCTGTACAATGTTCGGG 58.913 55.000 13.81 0.00 0.00 5.14
1991 2060 2.093306 TCCAGCTGTACAATGTTCGG 57.907 50.000 13.81 0.00 0.00 4.30
1992 2061 5.727791 GCTTATTCCAGCTGTACAATGTTCG 60.728 44.000 13.81 0.00 36.79 3.95
1993 2062 5.573146 GCTTATTCCAGCTGTACAATGTTC 58.427 41.667 13.81 0.00 36.79 3.18
1994 2063 4.094887 CGCTTATTCCAGCTGTACAATGTT 59.905 41.667 13.81 0.00 37.68 2.71
1995 2064 3.623060 CGCTTATTCCAGCTGTACAATGT 59.377 43.478 13.81 0.00 37.68 2.71
1996 2065 3.623060 ACGCTTATTCCAGCTGTACAATG 59.377 43.478 13.81 0.00 37.68 2.82
1997 2066 3.623060 CACGCTTATTCCAGCTGTACAAT 59.377 43.478 13.81 10.10 37.68 2.71
1998 2067 3.000041 CACGCTTATTCCAGCTGTACAA 59.000 45.455 13.81 2.60 37.68 2.41
1999 2068 2.028476 ACACGCTTATTCCAGCTGTACA 60.028 45.455 13.81 0.00 37.68 2.90
2000 2069 2.618053 ACACGCTTATTCCAGCTGTAC 58.382 47.619 13.81 0.00 37.68 2.90
2001 2070 3.000041 CAACACGCTTATTCCAGCTGTA 59.000 45.455 13.81 0.00 37.68 2.74
2002 2071 1.806542 CAACACGCTTATTCCAGCTGT 59.193 47.619 13.81 0.00 37.68 4.40
2003 2072 1.131126 CCAACACGCTTATTCCAGCTG 59.869 52.381 6.78 6.78 37.68 4.24
2004 2073 1.271379 ACCAACACGCTTATTCCAGCT 60.271 47.619 0.00 0.00 37.68 4.24
2005 2074 1.165270 ACCAACACGCTTATTCCAGC 58.835 50.000 0.00 0.00 36.33 4.85
2006 2075 3.915437 AAACCAACACGCTTATTCCAG 57.085 42.857 0.00 0.00 0.00 3.86
2022 2091 0.600057 CCTGCCTCTGAAGCAAAACC 59.400 55.000 2.19 0.00 40.35 3.27
2036 2105 1.185315 TTGCTTCCTATTTGCCTGCC 58.815 50.000 0.00 0.00 0.00 4.85
2046 2115 4.023536 GGTGTTCATCGTTTTTGCTTCCTA 60.024 41.667 0.00 0.00 0.00 2.94
2047 2116 3.243401 GGTGTTCATCGTTTTTGCTTCCT 60.243 43.478 0.00 0.00 0.00 3.36
2059 2129 2.679355 TTGCGAAAAGGTGTTCATCG 57.321 45.000 0.00 0.00 36.64 3.84
2080 2150 9.481340 GGTGCTCATCTTTTATTTCTTTCTTTT 57.519 29.630 0.00 0.00 0.00 2.27
2081 2151 8.864087 AGGTGCTCATCTTTTATTTCTTTCTTT 58.136 29.630 0.00 0.00 0.00 2.52
2082 2152 8.414629 AGGTGCTCATCTTTTATTTCTTTCTT 57.585 30.769 0.00 0.00 0.00 2.52
2083 2153 9.171877 CTAGGTGCTCATCTTTTATTTCTTTCT 57.828 33.333 0.00 0.00 0.00 2.52
2084 2154 8.951243 ACTAGGTGCTCATCTTTTATTTCTTTC 58.049 33.333 0.00 0.00 0.00 2.62
2085 2155 8.870075 ACTAGGTGCTCATCTTTTATTTCTTT 57.130 30.769 0.00 0.00 0.00 2.52
2086 2156 9.606631 CTACTAGGTGCTCATCTTTTATTTCTT 57.393 33.333 0.00 0.00 0.00 2.52
2087 2157 8.982723 TCTACTAGGTGCTCATCTTTTATTTCT 58.017 33.333 0.00 0.00 0.00 2.52
2088 2158 9.255304 CTCTACTAGGTGCTCATCTTTTATTTC 57.745 37.037 0.00 0.00 0.00 2.17
2089 2159 7.713073 GCTCTACTAGGTGCTCATCTTTTATTT 59.287 37.037 0.00 0.00 0.00 1.40
2090 2160 7.070571 AGCTCTACTAGGTGCTCATCTTTTATT 59.929 37.037 0.00 0.00 33.68 1.40
2091 2161 6.553100 AGCTCTACTAGGTGCTCATCTTTTAT 59.447 38.462 0.00 0.00 33.68 1.40
2092 2162 5.894393 AGCTCTACTAGGTGCTCATCTTTTA 59.106 40.000 0.00 0.00 33.68 1.52
2093 2163 4.714308 AGCTCTACTAGGTGCTCATCTTTT 59.286 41.667 0.00 0.00 33.68 2.27
2094 2164 4.285863 AGCTCTACTAGGTGCTCATCTTT 58.714 43.478 0.00 0.00 33.68 2.52
2095 2165 3.909732 AGCTCTACTAGGTGCTCATCTT 58.090 45.455 0.00 0.00 33.68 2.40
2096 2166 3.593442 AGCTCTACTAGGTGCTCATCT 57.407 47.619 0.00 0.00 33.68 2.90
2101 2171 0.547075 TCGGAGCTCTACTAGGTGCT 59.453 55.000 14.64 0.00 41.49 4.40
2102 2172 1.390565 TTCGGAGCTCTACTAGGTGC 58.609 55.000 14.64 0.00 40.37 5.01
2103 2173 2.753452 TGTTTCGGAGCTCTACTAGGTG 59.247 50.000 14.64 0.00 35.60 4.00
2104 2174 3.083122 TGTTTCGGAGCTCTACTAGGT 57.917 47.619 14.64 0.00 39.11 3.08
2105 2175 3.632604 TGATGTTTCGGAGCTCTACTAGG 59.367 47.826 14.64 0.00 0.00 3.02
2106 2176 4.902443 TGATGTTTCGGAGCTCTACTAG 57.098 45.455 14.64 0.76 0.00 2.57
2107 2177 5.654603 TTTGATGTTTCGGAGCTCTACTA 57.345 39.130 14.64 0.00 0.00 1.82
2108 2178 4.537135 TTTGATGTTTCGGAGCTCTACT 57.463 40.909 14.64 0.00 0.00 2.57
2109 2179 4.691216 ACTTTTGATGTTTCGGAGCTCTAC 59.309 41.667 14.64 7.66 0.00 2.59
2173 2366 1.134946 GATGGTCCCAAAATGGCGAAG 59.865 52.381 0.00 0.00 35.79 3.79
2184 2378 0.692476 CCAGTTCTGTGATGGTCCCA 59.308 55.000 0.00 0.00 0.00 4.37
2186 2380 2.568623 AACCAGTTCTGTGATGGTCC 57.431 50.000 0.00 0.00 46.56 4.46
2197 2391 8.641499 TGTAAACATCAAATTGAAACCAGTTC 57.359 30.769 0.00 0.00 36.70 3.01
2238 2432 3.615056 TGTACATAGGTCACAAATTCGCG 59.385 43.478 0.00 0.00 0.00 5.87
2256 2450 3.881937 ACGAAGGGGTAGAATGTGTAC 57.118 47.619 0.00 0.00 0.00 2.90
2261 2455 4.833390 AGAGAAAACGAAGGGGTAGAATG 58.167 43.478 0.00 0.00 0.00 2.67
2262 2456 5.489249 GAAGAGAAAACGAAGGGGTAGAAT 58.511 41.667 0.00 0.00 0.00 2.40
2295 2493 8.542926 AGGTATAGAAAAACCTTTGTACGGTAT 58.457 33.333 0.00 0.00 43.77 2.73
2325 2528 5.399991 TGTATAGTCCCTCGGAAATGGTAT 58.600 41.667 0.00 0.00 31.38 2.73
2404 2642 5.293324 GGTTTGACATGTCCAAAGTTTTTCC 59.707 40.000 22.85 13.84 34.59 3.13
2606 2852 2.676839 AGCTTCAAATCGAGCATGAGTG 59.323 45.455 0.00 0.00 0.00 3.51
2607 2853 2.935201 GAGCTTCAAATCGAGCATGAGT 59.065 45.455 0.00 0.00 0.00 3.41
2670 2916 2.025981 TGTGGTGCCAGATTTATCAGCT 60.026 45.455 0.00 0.00 31.87 4.24
2673 2919 3.719268 AGTGTGGTGCCAGATTTATCA 57.281 42.857 0.00 0.00 0.00 2.15
2677 2923 3.149196 CTGTTAGTGTGGTGCCAGATTT 58.851 45.455 0.00 0.00 0.00 2.17
2678 2924 2.553028 CCTGTTAGTGTGGTGCCAGATT 60.553 50.000 0.00 0.00 0.00 2.40
2682 2928 0.396435 CTCCTGTTAGTGTGGTGCCA 59.604 55.000 0.00 0.00 0.00 4.92
2685 2931 2.248248 TCTCCTCCTGTTAGTGTGGTG 58.752 52.381 0.00 0.00 0.00 4.17
2691 2937 2.950990 ACCCATCTCCTCCTGTTAGT 57.049 50.000 0.00 0.00 0.00 2.24
2695 2941 2.307098 CTGAAAACCCATCTCCTCCTGT 59.693 50.000 0.00 0.00 0.00 4.00
2697 2943 2.843113 CTCTGAAAACCCATCTCCTCCT 59.157 50.000 0.00 0.00 0.00 3.69
2698 2944 2.573915 ACTCTGAAAACCCATCTCCTCC 59.426 50.000 0.00 0.00 0.00 4.30
2699 2945 3.369997 GGACTCTGAAAACCCATCTCCTC 60.370 52.174 0.00 0.00 0.00 3.71
2735 2981 2.495084 GTTCCACTTCCACCTCTGTTC 58.505 52.381 0.00 0.00 0.00 3.18
2740 2986 1.003718 CCCGTTCCACTTCCACCTC 60.004 63.158 0.00 0.00 0.00 3.85
2741 2987 1.350310 AACCCGTTCCACTTCCACCT 61.350 55.000 0.00 0.00 0.00 4.00
2742 2988 0.466739 AAACCCGTTCCACTTCCACC 60.467 55.000 0.00 0.00 0.00 4.61
2743 2989 0.949397 GAAACCCGTTCCACTTCCAC 59.051 55.000 0.00 0.00 0.00 4.02
2744 2990 3.407443 GAAACCCGTTCCACTTCCA 57.593 52.632 0.00 0.00 0.00 3.53
2786 3032 0.183492 AGAACAGCCCAGCAGTCAAA 59.817 50.000 0.00 0.00 0.00 2.69
2802 3048 5.491070 CACAAATACTCCTCCATCACAGAA 58.509 41.667 0.00 0.00 0.00 3.02
2808 3054 4.446371 CTGACCACAAATACTCCTCCATC 58.554 47.826 0.00 0.00 0.00 3.51
2827 3073 4.068599 TCAAAATATGGTGTCAACGCTGA 58.931 39.130 0.00 0.00 0.00 4.26
2828 3074 4.083324 AGTCAAAATATGGTGTCAACGCTG 60.083 41.667 0.00 0.00 0.00 5.18
2829 3075 4.072131 AGTCAAAATATGGTGTCAACGCT 58.928 39.130 0.00 0.00 0.00 5.07
2830 3076 4.158384 CAGTCAAAATATGGTGTCAACGC 58.842 43.478 0.00 0.00 0.00 4.84
2831 3077 4.379394 CCCAGTCAAAATATGGTGTCAACG 60.379 45.833 0.00 0.00 31.85 4.10
2832 3078 4.618227 GCCCAGTCAAAATATGGTGTCAAC 60.618 45.833 0.00 0.00 31.85 3.18
2833 3079 3.509575 GCCCAGTCAAAATATGGTGTCAA 59.490 43.478 0.00 0.00 31.85 3.18
2834 3080 3.088532 GCCCAGTCAAAATATGGTGTCA 58.911 45.455 0.00 0.00 31.85 3.58
2835 3081 3.356290 AGCCCAGTCAAAATATGGTGTC 58.644 45.455 0.00 0.00 31.85 3.67
2836 3082 3.356290 GAGCCCAGTCAAAATATGGTGT 58.644 45.455 0.00 0.00 31.85 4.16
2837 3083 2.689983 GGAGCCCAGTCAAAATATGGTG 59.310 50.000 0.00 0.00 31.85 4.17
2838 3084 2.582636 AGGAGCCCAGTCAAAATATGGT 59.417 45.455 0.00 0.00 31.85 3.55
2839 3085 3.217626 GAGGAGCCCAGTCAAAATATGG 58.782 50.000 0.00 0.00 0.00 2.74
2840 3086 3.117738 AGGAGGAGCCCAGTCAAAATATG 60.118 47.826 0.00 0.00 37.37 1.78
2841 3087 3.126453 AGGAGGAGCCCAGTCAAAATAT 58.874 45.455 0.00 0.00 37.37 1.28
2842 3088 2.562296 AGGAGGAGCCCAGTCAAAATA 58.438 47.619 0.00 0.00 37.37 1.40
2843 3089 1.376649 AGGAGGAGCCCAGTCAAAAT 58.623 50.000 0.00 0.00 37.37 1.82
2844 3090 1.073923 GAAGGAGGAGCCCAGTCAAAA 59.926 52.381 0.00 0.00 37.37 2.44
2845 3091 0.693049 GAAGGAGGAGCCCAGTCAAA 59.307 55.000 0.00 0.00 37.37 2.69
2846 3092 1.201429 GGAAGGAGGAGCCCAGTCAA 61.201 60.000 0.00 0.00 37.37 3.18
2847 3093 1.613630 GGAAGGAGGAGCCCAGTCA 60.614 63.158 0.00 0.00 37.37 3.41
2848 3094 2.371259 GGGAAGGAGGAGCCCAGTC 61.371 68.421 0.00 0.00 41.64 3.51
2849 3095 2.285743 GGGAAGGAGGAGCCCAGT 60.286 66.667 0.00 0.00 41.64 4.00
2892 3138 5.310451 GGTGTAGAAAAGTTGGTGGTGATA 58.690 41.667 0.00 0.00 0.00 2.15
2903 3149 3.314693 TCTCCACAGGGTGTAGAAAAGT 58.685 45.455 0.00 0.00 25.98 2.66
2935 3182 6.667414 AGACCTCACTCTCATTTCATACTTCT 59.333 38.462 0.00 0.00 0.00 2.85
2940 3187 5.272402 TGGAGACCTCACTCTCATTTCATA 58.728 41.667 0.00 0.00 38.84 2.15
2947 3194 1.261480 GCTTGGAGACCTCACTCTCA 58.739 55.000 0.00 0.00 38.84 3.27
2948 3195 1.067213 GTGCTTGGAGACCTCACTCTC 60.067 57.143 0.00 0.00 37.13 3.20
2964 3211 6.322201 CCATGATTGTTAATTCTTAGGGTGCT 59.678 38.462 0.00 0.00 0.00 4.40
2974 3221 5.807011 GCTTGTCCACCATGATTGTTAATTC 59.193 40.000 0.00 0.00 0.00 2.17
2975 3222 5.245751 TGCTTGTCCACCATGATTGTTAATT 59.754 36.000 0.00 0.00 0.00 1.40
3021 3272 1.003580 CTGGAACCATGCTACAGGTGT 59.996 52.381 0.00 0.00 38.37 4.16
3033 3284 3.399330 GAAGACGTTGAATCTGGAACCA 58.601 45.455 0.00 0.00 0.00 3.67
3043 3294 1.001487 TCCGTTAGCGAAGACGTTGAA 60.001 47.619 0.00 0.00 41.33 2.69
3058 3309 2.357952 GGCAAGAAACTTCAGTTCCGTT 59.642 45.455 0.00 0.00 37.25 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.