Multiple sequence alignment - TraesCS7A01G176900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G176900 chr7A 100.000 9484 0 0 507 9990 130234413 130224930 0.000000e+00 17514.0
1 TraesCS7A01G176900 chr7A 97.674 301 7 0 507 807 163350821 163350521 1.490000e-142 518.0
2 TraesCS7A01G176900 chr7A 93.789 161 10 0 5221 5381 137770557 137770397 1.000000e-59 243.0
3 TraesCS7A01G176900 chr7A 100.000 87 0 0 1 87 130234919 130234833 2.890000e-35 161.0
4 TraesCS7A01G176900 chr7A 98.649 74 1 0 2232 2305 130232655 130232582 2.260000e-26 132.0
5 TraesCS7A01G176900 chr7A 98.649 74 1 0 2265 2338 130232688 130232615 2.260000e-26 132.0
6 TraesCS7A01G176900 chr7A 97.561 41 1 0 2232 2272 130232622 130232582 5.010000e-08 71.3
7 TraesCS7A01G176900 chr7A 97.561 41 1 0 2298 2338 130232688 130232648 5.010000e-08 71.3
8 TraesCS7A01G176900 chr7D 96.808 2788 58 8 6563 9345 131465377 131462616 0.000000e+00 4626.0
9 TraesCS7A01G176900 chr7D 92.964 1947 104 19 3019 4942 131468815 131466879 0.000000e+00 2806.0
10 TraesCS7A01G176900 chr7D 90.721 1498 94 20 806 2272 131471088 131469605 0.000000e+00 1954.0
11 TraesCS7A01G176900 chr7D 92.039 716 23 12 2290 2996 131469653 131468963 0.000000e+00 976.0
12 TraesCS7A01G176900 chr7D 96.926 553 16 1 5378 5930 131466551 131466000 0.000000e+00 926.0
13 TraesCS7A01G176900 chr7D 93.811 614 31 4 5937 6547 131466047 131465438 0.000000e+00 917.0
14 TraesCS7A01G176900 chr7D 92.254 568 29 5 9347 9907 131462582 131462023 0.000000e+00 791.0
15 TraesCS7A01G176900 chr7D 93.960 298 13 3 4930 5226 131466843 131466550 7.120000e-121 446.0
16 TraesCS7A01G176900 chr7D 95.031 161 8 0 5219 5379 457148955 457148795 4.630000e-63 254.0
17 TraesCS7A01G176900 chr7D 93.878 49 3 0 2257 2305 131469653 131469605 3.870000e-09 75.0
18 TraesCS7A01G176900 chr7B 95.508 2805 92 20 6548 9345 92316414 92313637 0.000000e+00 4451.0
19 TraesCS7A01G176900 chr7B 92.053 1510 94 14 3447 4942 92319449 92317952 0.000000e+00 2100.0
20 TraesCS7A01G176900 chr7B 92.653 1470 84 9 806 2268 92322536 92321084 0.000000e+00 2095.0
21 TraesCS7A01G176900 chr7B 96.511 1175 36 3 5378 6548 92317626 92316453 0.000000e+00 1938.0
22 TraesCS7A01G176900 chr7B 96.570 554 12 5 2445 2996 92321063 92320515 0.000000e+00 911.0
23 TraesCS7A01G176900 chr7B 94.011 551 24 2 9347 9891 92313603 92313056 0.000000e+00 826.0
24 TraesCS7A01G176900 chr7B 91.837 441 25 6 3016 3448 92319847 92319410 1.110000e-168 604.0
25 TraesCS7A01G176900 chr7B 94.966 298 12 2 4930 5226 92317920 92317625 1.970000e-126 464.0
26 TraesCS7A01G176900 chr7B 95.402 87 4 0 1 87 701285409 701285495 1.350000e-28 139.0
27 TraesCS7A01G176900 chr7B 97.297 37 0 1 2298 2334 92321119 92321084 3.010000e-05 62.1
28 TraesCS7A01G176900 chr7B 94.595 37 1 1 2265 2301 92321119 92321084 1.000000e-03 56.5
29 TraesCS7A01G176900 chr2A 87.893 636 60 11 2372 2996 629630762 629630133 0.000000e+00 732.0
30 TraesCS7A01G176900 chr2A 96.393 305 11 0 507 811 81018414 81018718 4.160000e-138 503.0
31 TraesCS7A01G176900 chr2A 95.597 159 6 1 5222 5380 86446014 86445857 4.630000e-63 254.0
32 TraesCS7A01G176900 chr2A 94.937 158 6 1 5222 5379 107386660 107386505 7.750000e-61 246.0
33 TraesCS7A01G176900 chr2A 80.656 305 33 9 1970 2273 629631048 629630769 7.860000e-51 213.0
34 TraesCS7A01G176900 chr2A 84.270 89 13 1 3232 3320 418243645 418243558 1.790000e-12 86.1
35 TraesCS7A01G176900 chr2A 100.000 37 0 0 9954 9990 80883083 80883047 1.800000e-07 69.4
36 TraesCS7A01G176900 chr4D 87.719 627 64 7 2372 2991 464860687 464861307 0.000000e+00 719.0
37 TraesCS7A01G176900 chr4D 84.282 439 54 11 1837 2273 464860255 464860680 2.010000e-111 414.0
38 TraesCS7A01G176900 chr4D 86.047 86 12 0 3232 3317 51617750 51617665 1.070000e-14 93.5
39 TraesCS7A01G176900 chr5A 87.432 549 53 11 2372 2911 508856999 508856458 1.430000e-172 617.0
40 TraesCS7A01G176900 chr5A 94.534 311 16 1 507 816 440954495 440954805 7.020000e-131 479.0
41 TraesCS7A01G176900 chr5A 81.535 417 48 13 1857 2272 508857395 508857007 5.820000e-82 316.0
42 TraesCS7A01G176900 chr5A 95.402 87 4 0 1 87 666594255 666594341 1.350000e-28 139.0
43 TraesCS7A01G176900 chr3A 95.820 311 11 2 507 815 502521125 502520815 1.500000e-137 501.0
44 TraesCS7A01G176900 chr3A 96.346 301 11 0 507 807 634129656 634129956 6.970000e-136 496.0
45 TraesCS7A01G176900 chr3A 96.000 300 11 1 508 807 51405697 51405995 4.190000e-133 486.0
46 TraesCS7A01G176900 chr3A 95.402 87 4 0 1 87 38417508 38417422 1.350000e-28 139.0
47 TraesCS7A01G176900 chr3A 95.402 87 4 0 1 87 63035571 63035485 1.350000e-28 139.0
48 TraesCS7A01G176900 chr1A 96.066 305 12 0 507 811 21758998 21758694 1.940000e-136 497.0
49 TraesCS7A01G176900 chr1A 95.402 87 4 0 1 87 484339926 484339840 1.350000e-28 139.0
50 TraesCS7A01G176900 chr1A 97.826 46 1 0 3380 3425 256813976 256814021 8.320000e-11 80.5
51 TraesCS7A01G176900 chr6A 96.346 301 11 0 507 807 116953124 116952824 6.970000e-136 496.0
52 TraesCS7A01G176900 chr6A 96.053 304 12 0 507 810 598048174 598047871 6.970000e-136 496.0
53 TraesCS7A01G176900 chr6A 95.402 87 4 0 1 87 117663978 117664064 1.350000e-28 139.0
54 TraesCS7A01G176900 chr6A 95.402 87 4 0 1 87 591408537 591408451 1.350000e-28 139.0
55 TraesCS7A01G176900 chr1B 86.567 335 32 8 2585 2912 661037748 661038076 3.430000e-94 357.0
56 TraesCS7A01G176900 chr1B 92.157 153 10 1 2372 2522 661037597 661037749 2.190000e-51 215.0
57 TraesCS7A01G176900 chr1B 86.923 130 14 3 3255 3381 16919462 16919591 1.050000e-29 143.0
58 TraesCS7A01G176900 chr1B 95.556 45 2 0 3383 3427 98254947 98254991 1.390000e-08 73.1
59 TraesCS7A01G176900 chr2D 94.969 159 8 0 5222 5380 86086120 86085962 5.990000e-62 250.0
60 TraesCS7A01G176900 chr2D 94.410 161 8 1 5220 5379 556055652 556055812 7.750000e-61 246.0
61 TraesCS7A01G176900 chr2D 78.400 125 19 7 3377 3498 90505237 90505356 3.870000e-09 75.0
62 TraesCS7A01G176900 chr2D 93.617 47 3 0 3379 3425 2476688 2476642 5.010000e-08 71.3
63 TraesCS7A01G176900 chrUn 94.839 155 8 0 5225 5379 95996574 95996420 1.000000e-59 243.0
64 TraesCS7A01G176900 chrUn 84.615 91 12 2 3465 3554 12469497 12469408 1.380000e-13 89.8
65 TraesCS7A01G176900 chrUn 80.769 104 15 5 3466 3565 215698451 215698553 1.080000e-09 76.8
66 TraesCS7A01G176900 chrUn 80.769 104 15 5 3466 3565 215704698 215704800 1.080000e-09 76.8
67 TraesCS7A01G176900 chr2B 94.375 160 6 3 5222 5380 139078037 139077880 1.000000e-59 243.0
68 TraesCS7A01G176900 chr2B 87.059 85 11 0 3263 3347 131514333 131514417 8.260000e-16 97.1
69 TraesCS7A01G176900 chr2B 80.769 104 15 5 3466 3565 32965443 32965545 1.080000e-09 76.8
70 TraesCS7A01G176900 chr3D 93.168 161 11 0 5221 5381 580330578 580330738 4.660000e-58 237.0
71 TraesCS7A01G176900 chr5B 95.402 87 4 0 1 87 711855513 711855427 1.350000e-28 139.0
72 TraesCS7A01G176900 chr5B 79.592 147 25 5 3234 3376 541157366 541157221 6.380000e-17 100.0
73 TraesCS7A01G176900 chr4A 95.402 87 4 0 1 87 631941239 631941153 1.350000e-28 139.0
74 TraesCS7A01G176900 chr4A 84.091 88 11 2 3465 3550 152506660 152506746 2.310000e-11 82.4
75 TraesCS7A01G176900 chr1D 85.156 128 17 2 3255 3381 11545407 11545533 8.140000e-26 130.0
76 TraesCS7A01G176900 chr1D 84.536 97 12 3 3466 3561 393032563 393032469 1.070000e-14 93.5
77 TraesCS7A01G176900 chr1D 83.333 96 14 2 3232 3327 26971769 26971676 4.970000e-13 87.9
78 TraesCS7A01G176900 chr6D 84.783 92 10 4 3465 3554 458020853 458020942 1.380000e-13 89.8
79 TraesCS7A01G176900 chr6D 95.455 44 2 0 3386 3429 174373784 174373741 5.010000e-08 71.3
80 TraesCS7A01G176900 chr6B 95.556 45 2 0 3385 3429 422359698 422359742 1.390000e-08 73.1
81 TraesCS7A01G176900 chr6B 97.561 41 1 0 3385 3425 545202289 545202249 5.010000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G176900 chr7A 130224930 130234919 9989 True 3013.600000 17514 98.736667 1 9990 6 chr7A.!!$R3 9989
1 TraesCS7A01G176900 chr7D 131462023 131471088 9065 True 1501.888889 4626 93.706778 806 9907 9 chr7D.!!$R2 9101
2 TraesCS7A01G176900 chr7B 92313056 92322536 9480 True 1350.760000 4451 94.600100 806 9891 10 chr7B.!!$R1 9085
3 TraesCS7A01G176900 chr2A 629630133 629631048 915 True 472.500000 732 84.274500 1970 2996 2 chr2A.!!$R5 1026
4 TraesCS7A01G176900 chr4D 464860255 464861307 1052 False 566.500000 719 86.000500 1837 2991 2 chr4D.!!$F1 1154
5 TraesCS7A01G176900 chr5A 508856458 508857395 937 True 466.500000 617 84.483500 1857 2911 2 chr5A.!!$R1 1054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
679 680 0.042013 TAAGTGTTTTCAACCGCGCG 60.042 50.000 25.67 25.67 0.00 6.86 F
779 780 0.248417 TAATTTACGACGCGGCGCTA 60.248 50.000 37.74 22.90 33.86 4.26 F
796 797 0.370273 CTAGTTTAGCGCGGCTGTTG 59.630 55.000 8.83 0.00 40.10 3.33 F
1454 1472 0.764271 TGAGGTGTTGTGCATCCTCA 59.236 50.000 17.20 17.20 44.89 3.86 F
2204 2246 0.881796 GCTAAAACCTGGGTGAGCAC 59.118 55.000 12.73 0.00 32.69 4.40 F
2290 2333 0.888285 AAGCTTGCAGTGTGAGAGGC 60.888 55.000 0.00 0.00 0.00 4.70 F
2291 2334 1.302351 GCTTGCAGTGTGAGAGGCT 60.302 57.895 0.00 0.00 0.00 4.58 F
2292 2335 0.888285 GCTTGCAGTGTGAGAGGCTT 60.888 55.000 0.00 0.00 0.00 4.35 F
4108 4828 0.103026 CGGTCCAGATCTTGCGATGA 59.897 55.000 0.00 0.00 0.00 2.92 F
4782 5506 0.524862 CAACAGCTGAATGCCCTCAC 59.475 55.000 23.35 0.00 44.23 3.51 F
4942 5670 0.405198 TGTGCCCACCAGTCATGAAT 59.595 50.000 0.00 0.00 0.00 2.57 F
6360 7137 0.034896 CGGGGTCAGCAGTACAAACT 59.965 55.000 0.00 0.00 35.91 2.66 F
6923 7752 0.109319 CGTTGCAAAGGTACCATGCC 60.109 55.000 29.21 18.65 39.31 4.40 F
7816 8645 1.692411 AGAAAACAAGGCCAGTGACC 58.308 50.000 5.01 0.00 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2273 2316 0.888285 AAGCCTCTCACACTGCAAGC 60.888 55.000 0.00 0.0 37.60 4.01 R
2306 2349 0.888285 AAGCCTCTCACACTGCAAGC 60.888 55.000 0.00 0.0 37.60 4.01 R
2309 2352 1.694150 AGTTAAGCCTCTCACACTGCA 59.306 47.619 0.00 0.0 0.00 4.41 R
3061 3763 1.028130 TCAATGCCACAGAACGCAAA 58.972 45.000 0.00 0.0 38.75 3.68 R
4058 4771 0.121197 AACATCAAGGAGGAGGGGGA 59.879 55.000 0.00 0.0 0.00 4.81 R
4059 4772 1.002857 AAACATCAAGGAGGAGGGGG 58.997 55.000 0.00 0.0 0.00 5.40 R
4064 4777 4.289410 TGATCTGGAAAACATCAAGGAGGA 59.711 41.667 0.00 0.0 29.12 3.71 R
4166 4888 6.673154 AACTTGTAGTACCGATTAAATGGC 57.327 37.500 0.00 0.0 0.00 4.40 R
4919 5647 1.067425 CATGACTGGTGGGCACAAATG 60.067 52.381 0.00 0.0 34.73 2.32 R
6360 7137 0.916086 ATAATCCTTGCGGTCCCACA 59.084 50.000 0.00 0.0 0.00 4.17 R
6368 7145 1.093972 TGTGTGGCATAATCCTTGCG 58.906 50.000 0.00 0.0 41.07 4.85 R
7816 8645 1.175983 TGGGTGCTTTTTACGGCAGG 61.176 55.000 0.00 0.0 39.22 4.85 R
8887 9724 2.489938 TGGGAACACTGCTTATCACC 57.510 50.000 0.00 0.0 33.40 4.02 R
9182 10019 1.267574 TGGTGCTCCCTCTGTGATCC 61.268 60.000 1.59 0.0 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
548 549 3.978193 GTCCATGGGTGGGTGGCA 61.978 66.667 13.02 0.00 46.06 4.92
549 550 3.660571 TCCATGGGTGGGTGGCAG 61.661 66.667 13.02 0.00 46.06 4.85
550 551 4.764771 CCATGGGTGGGTGGCAGG 62.765 72.222 2.85 0.00 42.11 4.85
551 552 4.764771 CATGGGTGGGTGGCAGGG 62.765 72.222 0.00 0.00 0.00 4.45
586 587 2.202756 GCGAGGCGTAGGACAAGG 60.203 66.667 0.00 0.00 0.00 3.61
587 588 2.707849 GCGAGGCGTAGGACAAGGA 61.708 63.158 0.00 0.00 0.00 3.36
588 589 1.433879 CGAGGCGTAGGACAAGGAG 59.566 63.158 0.00 0.00 0.00 3.69
589 590 1.030488 CGAGGCGTAGGACAAGGAGA 61.030 60.000 0.00 0.00 0.00 3.71
590 591 0.741915 GAGGCGTAGGACAAGGAGAG 59.258 60.000 0.00 0.00 0.00 3.20
591 592 0.684805 AGGCGTAGGACAAGGAGAGG 60.685 60.000 0.00 0.00 0.00 3.69
592 593 0.683504 GGCGTAGGACAAGGAGAGGA 60.684 60.000 0.00 0.00 0.00 3.71
593 594 0.741915 GCGTAGGACAAGGAGAGGAG 59.258 60.000 0.00 0.00 0.00 3.69
594 595 1.682394 GCGTAGGACAAGGAGAGGAGA 60.682 57.143 0.00 0.00 0.00 3.71
595 596 2.294074 CGTAGGACAAGGAGAGGAGAG 58.706 57.143 0.00 0.00 0.00 3.20
596 597 2.092861 CGTAGGACAAGGAGAGGAGAGA 60.093 54.545 0.00 0.00 0.00 3.10
597 598 2.826674 AGGACAAGGAGAGGAGAGAG 57.173 55.000 0.00 0.00 0.00 3.20
598 599 2.000048 AGGACAAGGAGAGGAGAGAGT 59.000 52.381 0.00 0.00 0.00 3.24
599 600 2.099405 GGACAAGGAGAGGAGAGAGTG 58.901 57.143 0.00 0.00 0.00 3.51
600 601 1.476488 GACAAGGAGAGGAGAGAGTGC 59.524 57.143 0.00 0.00 0.00 4.40
601 602 0.455410 CAAGGAGAGGAGAGAGTGCG 59.545 60.000 0.00 0.00 0.00 5.34
602 603 0.682855 AAGGAGAGGAGAGAGTGCGG 60.683 60.000 0.00 0.00 0.00 5.69
603 604 2.781158 GGAGAGGAGAGAGTGCGGC 61.781 68.421 0.00 0.00 0.00 6.53
604 605 3.119709 GAGAGGAGAGAGTGCGGCG 62.120 68.421 0.51 0.51 0.00 6.46
605 606 4.863925 GAGGAGAGAGTGCGGCGC 62.864 72.222 27.44 27.44 0.00 6.53
645 646 4.451150 CTGTAGCTGGCGCCCGAA 62.451 66.667 26.77 6.61 36.60 4.30
646 647 3.950794 CTGTAGCTGGCGCCCGAAA 62.951 63.158 26.77 6.19 36.60 3.46
647 648 2.513897 GTAGCTGGCGCCCGAAAT 60.514 61.111 26.77 9.91 36.60 2.17
648 649 1.227438 GTAGCTGGCGCCCGAAATA 60.227 57.895 26.77 8.84 36.60 1.40
649 650 1.227438 TAGCTGGCGCCCGAAATAC 60.227 57.895 26.77 3.90 36.60 1.89
650 651 2.964438 TAGCTGGCGCCCGAAATACG 62.964 60.000 26.77 2.88 42.18 3.06
668 669 3.045492 CCGCGCGGGTAAGTGTTT 61.045 61.111 40.50 0.00 0.00 2.83
669 670 2.609759 CCGCGCGGGTAAGTGTTTT 61.610 57.895 40.50 0.00 0.00 2.43
670 671 1.154543 CGCGCGGGTAAGTGTTTTC 60.155 57.895 24.84 0.00 0.00 2.29
671 672 1.833434 CGCGCGGGTAAGTGTTTTCA 61.833 55.000 24.84 0.00 0.00 2.69
672 673 0.308376 GCGCGGGTAAGTGTTTTCAA 59.692 50.000 8.83 0.00 0.00 2.69
673 674 1.922880 GCGCGGGTAAGTGTTTTCAAC 60.923 52.381 8.83 0.00 0.00 3.18
674 675 1.334329 CGCGGGTAAGTGTTTTCAACC 60.334 52.381 0.00 0.00 0.00 3.77
675 676 1.334329 GCGGGTAAGTGTTTTCAACCG 60.334 52.381 0.00 0.00 31.10 4.44
676 677 1.334329 CGGGTAAGTGTTTTCAACCGC 60.334 52.381 0.00 0.00 31.10 5.68
677 678 1.334329 GGGTAAGTGTTTTCAACCGCG 60.334 52.381 0.00 0.00 31.10 6.46
678 679 1.391787 GTAAGTGTTTTCAACCGCGC 58.608 50.000 0.00 0.00 0.00 6.86
679 680 0.042013 TAAGTGTTTTCAACCGCGCG 60.042 50.000 25.67 25.67 0.00 6.86
680 681 3.383601 GTGTTTTCAACCGCGCGC 61.384 61.111 27.36 23.91 0.00 6.86
681 682 4.615834 TGTTTTCAACCGCGCGCC 62.616 61.111 27.36 8.51 0.00 6.53
693 694 2.202905 CGCGCCCAACCCGTTATA 60.203 61.111 0.00 0.00 0.00 0.98
694 695 2.241880 CGCGCCCAACCCGTTATAG 61.242 63.158 0.00 0.00 0.00 1.31
695 696 2.540228 GCGCCCAACCCGTTATAGC 61.540 63.158 0.00 0.00 0.00 2.97
696 697 1.153329 CGCCCAACCCGTTATAGCA 60.153 57.895 0.00 0.00 0.00 3.49
697 698 1.433837 CGCCCAACCCGTTATAGCAC 61.434 60.000 0.00 0.00 0.00 4.40
698 699 1.433837 GCCCAACCCGTTATAGCACG 61.434 60.000 0.00 0.00 40.02 5.34
699 700 1.433837 CCCAACCCGTTATAGCACGC 61.434 60.000 0.00 0.00 38.93 5.34
700 701 1.634225 CAACCCGTTATAGCACGCG 59.366 57.895 3.53 3.53 38.93 6.01
701 702 2.169146 AACCCGTTATAGCACGCGC 61.169 57.895 5.73 0.00 38.93 6.86
702 703 3.688330 CCCGTTATAGCACGCGCG 61.688 66.667 30.96 30.96 45.49 6.86
703 704 2.952783 CCGTTATAGCACGCGCGT 60.953 61.111 32.73 32.73 45.49 6.01
704 705 2.533285 CGTTATAGCACGCGCGTC 59.467 61.111 35.61 26.23 45.49 5.19
705 706 2.533285 GTTATAGCACGCGCGTCG 59.467 61.111 35.61 27.55 45.49 5.12
761 762 3.190160 GCGCGCTAAAACGGCCTA 61.190 61.111 26.67 0.00 0.00 3.93
762 763 2.742738 GCGCGCTAAAACGGCCTAA 61.743 57.895 26.67 0.00 0.00 2.69
763 764 2.011453 CGCGCTAAAACGGCCTAAT 58.989 52.632 5.56 0.00 0.00 1.73
764 765 0.375803 CGCGCTAAAACGGCCTAATT 59.624 50.000 5.56 0.00 0.00 1.40
765 766 1.202098 CGCGCTAAAACGGCCTAATTT 60.202 47.619 5.56 1.65 0.00 1.82
766 767 2.030701 CGCGCTAAAACGGCCTAATTTA 59.969 45.455 5.56 2.84 0.00 1.40
767 768 3.357021 GCGCTAAAACGGCCTAATTTAC 58.643 45.455 0.00 0.00 0.00 2.01
768 769 3.600346 CGCTAAAACGGCCTAATTTACG 58.400 45.455 0.00 6.74 0.00 3.18
769 770 3.306703 CGCTAAAACGGCCTAATTTACGA 59.693 43.478 0.00 0.00 0.00 3.43
770 771 4.581493 GCTAAAACGGCCTAATTTACGAC 58.419 43.478 0.00 0.00 0.00 4.34
771 772 3.727780 AAAACGGCCTAATTTACGACG 57.272 42.857 0.00 0.00 0.00 5.12
772 773 1.001624 AACGGCCTAATTTACGACGC 58.998 50.000 0.00 0.00 0.00 5.19
773 774 1.141591 ACGGCCTAATTTACGACGCG 61.142 55.000 3.53 3.53 0.00 6.01
774 775 1.814211 CGGCCTAATTTACGACGCGG 61.814 60.000 12.47 0.00 0.00 6.46
775 776 1.274770 GCCTAATTTACGACGCGGC 59.725 57.895 12.47 6.41 0.00 6.53
776 777 1.556484 CCTAATTTACGACGCGGCG 59.444 57.895 36.13 36.13 37.29 6.46
777 778 1.084478 CTAATTTACGACGCGGCGC 60.084 57.895 37.74 24.21 33.86 6.53
778 779 1.477030 CTAATTTACGACGCGGCGCT 61.477 55.000 37.74 24.06 33.86 5.92
779 780 0.248417 TAATTTACGACGCGGCGCTA 60.248 50.000 37.74 22.90 33.86 4.26
780 781 1.477030 AATTTACGACGCGGCGCTAG 61.477 55.000 37.74 21.62 33.86 3.42
781 782 2.603135 ATTTACGACGCGGCGCTAGT 62.603 55.000 37.74 25.78 33.86 2.57
782 783 2.801113 TTTACGACGCGGCGCTAGTT 62.801 55.000 37.74 18.24 33.86 2.24
783 784 2.801113 TTACGACGCGGCGCTAGTTT 62.801 55.000 37.74 17.36 33.86 2.66
784 785 1.976478 TACGACGCGGCGCTAGTTTA 61.976 55.000 37.74 16.08 33.86 2.01
785 786 2.565394 CGACGCGGCGCTAGTTTAG 61.565 63.158 26.53 14.71 0.00 1.85
793 794 3.006706 GCTAGTTTAGCGCGGCTG 58.993 61.111 8.83 0.00 42.62 4.85
794 795 1.810030 GCTAGTTTAGCGCGGCTGT 60.810 57.895 8.83 0.00 42.62 4.40
795 796 1.359459 GCTAGTTTAGCGCGGCTGTT 61.359 55.000 8.83 0.00 42.62 3.16
796 797 0.370273 CTAGTTTAGCGCGGCTGTTG 59.630 55.000 8.83 0.00 40.10 3.33
797 798 1.017177 TAGTTTAGCGCGGCTGTTGG 61.017 55.000 8.83 0.00 40.10 3.77
798 799 2.031314 TTTAGCGCGGCTGTTGGA 59.969 55.556 8.83 0.00 40.10 3.53
799 800 2.032634 TTTAGCGCGGCTGTTGGAG 61.033 57.895 8.83 0.00 40.10 3.86
800 801 2.443260 TTTAGCGCGGCTGTTGGAGA 62.443 55.000 8.83 0.00 40.10 3.71
801 802 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
802 803 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
803 804 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
804 805 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
835 836 1.673009 CCCTCGCGTAAAAGCCCAA 60.673 57.895 5.77 0.00 0.00 4.12
850 851 2.624838 AGCCCAACAAATGACAGAACAG 59.375 45.455 0.00 0.00 0.00 3.16
1068 1070 1.945387 CATCCAAGTACGCAGAGCAT 58.055 50.000 0.00 0.00 0.00 3.79
1201 1203 4.787280 CCCACCCCGCTCCTCTCT 62.787 72.222 0.00 0.00 0.00 3.10
1325 1333 1.751924 CTTCCTCCCCTACTTCGACAG 59.248 57.143 0.00 0.00 0.00 3.51
1384 1393 1.737008 GCGACCGACACCTTCCTTC 60.737 63.158 0.00 0.00 0.00 3.46
1454 1472 0.764271 TGAGGTGTTGTGCATCCTCA 59.236 50.000 17.20 17.20 44.89 3.86
1455 1473 1.142667 TGAGGTGTTGTGCATCCTCAA 59.857 47.619 18.15 4.66 44.53 3.02
1460 1478 3.181476 GGTGTTGTGCATCCTCAAAAAGT 60.181 43.478 0.00 0.00 0.00 2.66
1487 1505 1.067582 CTGGGTAATCCGGACGAGC 59.932 63.158 6.12 7.26 44.90 5.03
1590 1608 2.725815 GCACGCGCCTTTTGTGTC 60.726 61.111 5.73 3.49 36.04 3.67
1634 1652 2.613026 TGGTCACGTGATGTTTCAGT 57.387 45.000 23.12 0.00 30.85 3.41
1638 1656 3.064820 GGTCACGTGATGTTTCAGTTGTT 59.935 43.478 23.12 0.00 30.85 2.83
1647 1665 5.300792 TGATGTTTCAGTTGTTTAGGGGTTC 59.699 40.000 0.00 0.00 0.00 3.62
1697 1715 2.202623 GAGTCGTCGCCGAGCATT 60.203 61.111 0.00 0.00 45.26 3.56
1736 1754 1.072965 CATAGGGGGATTCTGCTGACC 59.927 57.143 0.00 0.00 0.00 4.02
1757 1775 1.279496 TGAAGGGGACTGTGATCAGG 58.721 55.000 0.00 0.00 45.14 3.86
1763 1781 1.561643 GGACTGTGATCAGGTCAGGA 58.438 55.000 22.33 0.00 45.14 3.86
1785 1803 1.134699 GTGTGAAGATGATCGAGGGCA 60.135 52.381 0.00 0.00 0.00 5.36
1791 1809 2.650813 GATGATCGAGGGCAAGCGGT 62.651 60.000 0.00 0.00 0.00 5.68
1792 1810 2.892425 GATCGAGGGCAAGCGGTG 60.892 66.667 0.00 0.00 0.00 4.94
1796 1814 2.436115 GAGGGCAAGCGGTGGTAC 60.436 66.667 0.00 0.00 0.00 3.34
1929 1954 7.365741 AGCATAACTGTGAATTGCATATTAGC 58.634 34.615 0.00 0.00 35.79 3.09
1930 1955 7.013559 AGCATAACTGTGAATTGCATATTAGCA 59.986 33.333 0.00 0.00 43.99 3.49
2045 2072 3.199071 AGGTGATACTTGATGGCCGTTTA 59.801 43.478 0.00 0.00 0.00 2.01
2046 2073 4.134563 GGTGATACTTGATGGCCGTTTAT 58.865 43.478 0.00 0.00 0.00 1.40
2111 2152 4.503741 TTTTAGTTGTGCTGGCAAGATC 57.496 40.909 0.00 0.00 0.00 2.75
2204 2246 0.881796 GCTAAAACCTGGGTGAGCAC 59.118 55.000 12.73 0.00 32.69 4.40
2261 2304 2.771089 CTTGCAGTGTGAGAGGCTTAA 58.229 47.619 0.00 0.00 0.00 1.85
2262 2305 2.169832 TGCAGTGTGAGAGGCTTAAC 57.830 50.000 0.00 0.00 0.00 2.01
2264 2307 2.104792 TGCAGTGTGAGAGGCTTAACTT 59.895 45.455 0.00 0.00 0.00 2.66
2265 2308 2.481952 GCAGTGTGAGAGGCTTAACTTG 59.518 50.000 0.00 0.00 0.00 3.16
2267 2310 4.130118 CAGTGTGAGAGGCTTAACTTGTT 58.870 43.478 0.00 0.00 0.00 2.83
2268 2311 4.576463 CAGTGTGAGAGGCTTAACTTGTTT 59.424 41.667 0.00 0.00 0.00 2.83
2269 2312 5.758296 CAGTGTGAGAGGCTTAACTTGTTTA 59.242 40.000 0.00 0.00 0.00 2.01
2270 2313 6.260050 CAGTGTGAGAGGCTTAACTTGTTTAA 59.740 38.462 0.00 0.00 0.00 1.52
2272 2315 7.338449 AGTGTGAGAGGCTTAACTTGTTTAAAA 59.662 33.333 0.00 0.00 0.00 1.52
2273 2316 7.644157 GTGTGAGAGGCTTAACTTGTTTAAAAG 59.356 37.037 0.00 0.00 0.00 2.27
2275 2318 6.546034 TGAGAGGCTTAACTTGTTTAAAAGCT 59.454 34.615 14.92 0.00 41.72 3.74
2278 2321 5.753438 AGGCTTAACTTGTTTAAAAGCTTGC 59.247 36.000 0.00 0.00 41.72 4.01
2279 2322 5.522097 GGCTTAACTTGTTTAAAAGCTTGCA 59.478 36.000 0.00 0.00 41.72 4.08
2280 2323 6.292328 GGCTTAACTTGTTTAAAAGCTTGCAG 60.292 38.462 0.00 0.00 41.72 4.41
2282 2325 7.518731 TTAACTTGTTTAAAAGCTTGCAGTG 57.481 32.000 0.00 0.00 0.00 3.66
2283 2326 5.072040 ACTTGTTTAAAAGCTTGCAGTGT 57.928 34.783 0.00 0.00 0.00 3.55
2284 2327 4.864247 ACTTGTTTAAAAGCTTGCAGTGTG 59.136 37.500 0.00 0.00 0.00 3.82
2286 2329 4.671377 TGTTTAAAAGCTTGCAGTGTGAG 58.329 39.130 0.00 0.00 0.00 3.51
2287 2330 4.397730 TGTTTAAAAGCTTGCAGTGTGAGA 59.602 37.500 0.00 0.00 0.00 3.27
2288 2331 4.818534 TTAAAAGCTTGCAGTGTGAGAG 57.181 40.909 0.00 0.00 0.00 3.20
2289 2332 1.602311 AAAGCTTGCAGTGTGAGAGG 58.398 50.000 0.00 0.00 0.00 3.69
2290 2333 0.888285 AAGCTTGCAGTGTGAGAGGC 60.888 55.000 0.00 0.00 0.00 4.70
2291 2334 1.302351 GCTTGCAGTGTGAGAGGCT 60.302 57.895 0.00 0.00 0.00 4.58
2292 2335 0.888285 GCTTGCAGTGTGAGAGGCTT 60.888 55.000 0.00 0.00 0.00 4.35
2293 2336 1.609061 GCTTGCAGTGTGAGAGGCTTA 60.609 52.381 0.00 0.00 0.00 3.09
2294 2337 2.771089 CTTGCAGTGTGAGAGGCTTAA 58.229 47.619 0.00 0.00 0.00 1.85
2295 2338 2.169832 TGCAGTGTGAGAGGCTTAAC 57.830 50.000 0.00 0.00 0.00 2.01
2296 2339 1.694150 TGCAGTGTGAGAGGCTTAACT 59.306 47.619 0.00 0.00 0.00 2.24
2297 2340 2.104792 TGCAGTGTGAGAGGCTTAACTT 59.895 45.455 0.00 0.00 0.00 2.66
2298 2341 2.481952 GCAGTGTGAGAGGCTTAACTTG 59.518 50.000 0.00 0.00 0.00 3.16
2299 2342 3.733337 CAGTGTGAGAGGCTTAACTTGT 58.267 45.455 0.00 0.00 0.00 3.16
2300 2343 4.130118 CAGTGTGAGAGGCTTAACTTGTT 58.870 43.478 0.00 0.00 0.00 2.83
2301 2344 4.576463 CAGTGTGAGAGGCTTAACTTGTTT 59.424 41.667 0.00 0.00 0.00 2.83
2302 2345 5.758296 CAGTGTGAGAGGCTTAACTTGTTTA 59.242 40.000 0.00 0.00 0.00 2.01
2303 2346 6.260050 CAGTGTGAGAGGCTTAACTTGTTTAA 59.740 38.462 0.00 0.00 0.00 1.52
2304 2347 6.826741 AGTGTGAGAGGCTTAACTTGTTTAAA 59.173 34.615 0.00 0.00 0.00 1.52
2305 2348 7.338449 AGTGTGAGAGGCTTAACTTGTTTAAAA 59.662 33.333 0.00 0.00 0.00 1.52
2306 2349 7.644157 GTGTGAGAGGCTTAACTTGTTTAAAAG 59.356 37.037 0.00 0.00 0.00 2.27
2307 2350 6.637254 GTGAGAGGCTTAACTTGTTTAAAAGC 59.363 38.462 9.66 9.66 41.38 3.51
2308 2351 6.546034 TGAGAGGCTTAACTTGTTTAAAAGCT 59.454 34.615 14.92 0.00 41.72 3.74
2309 2352 7.068226 TGAGAGGCTTAACTTGTTTAAAAGCTT 59.932 33.333 14.92 10.08 41.72 3.74
2310 2353 7.203218 AGAGGCTTAACTTGTTTAAAAGCTTG 58.797 34.615 0.00 0.00 41.72 4.01
2311 2354 5.753438 AGGCTTAACTTGTTTAAAAGCTTGC 59.247 36.000 0.00 0.00 41.72 4.01
2312 2355 5.522097 GGCTTAACTTGTTTAAAAGCTTGCA 59.478 36.000 0.00 0.00 41.72 4.08
2313 2356 6.292328 GGCTTAACTTGTTTAAAAGCTTGCAG 60.292 38.462 0.00 0.00 41.72 4.41
2314 2357 6.255670 GCTTAACTTGTTTAAAAGCTTGCAGT 59.744 34.615 0.00 0.00 39.51 4.40
2315 2358 7.518731 TTAACTTGTTTAAAAGCTTGCAGTG 57.481 32.000 0.00 0.00 0.00 3.66
2316 2359 5.072040 ACTTGTTTAAAAGCTTGCAGTGT 57.928 34.783 0.00 0.00 0.00 3.55
2359 2405 2.686915 GCAGCAGCATAGTTTTGAGGAT 59.313 45.455 0.00 0.00 41.58 3.24
2360 2406 3.879295 GCAGCAGCATAGTTTTGAGGATA 59.121 43.478 0.00 0.00 41.58 2.59
2363 2409 6.460676 GCAGCAGCATAGTTTTGAGGATATTT 60.461 38.462 0.00 0.00 41.58 1.40
2364 2410 7.486647 CAGCAGCATAGTTTTGAGGATATTTT 58.513 34.615 0.00 0.00 0.00 1.82
2365 2411 7.977853 CAGCAGCATAGTTTTGAGGATATTTTT 59.022 33.333 0.00 0.00 0.00 1.94
2479 2525 1.820519 AGTGCCATGGCTGTATGTTTG 59.179 47.619 35.53 0.00 42.51 2.93
2635 2684 6.668541 ATCGAAGGTAGTGTGATTTCATTG 57.331 37.500 0.00 0.00 0.00 2.82
2636 2685 5.547465 TCGAAGGTAGTGTGATTTCATTGT 58.453 37.500 0.00 0.00 0.00 2.71
2992 3047 5.024118 AGCTGGAGGTAAGTAGCTTCTTTA 58.976 41.667 11.11 0.00 43.49 1.85
2995 3050 4.715297 TGGAGGTAAGTAGCTTCTTTAGGG 59.285 45.833 11.11 0.00 33.58 3.53
2997 3052 5.189342 GGAGGTAAGTAGCTTCTTTAGGGTT 59.811 44.000 11.11 0.00 33.58 4.11
2998 3053 6.296317 GGAGGTAAGTAGCTTCTTTAGGGTTT 60.296 42.308 11.11 0.00 33.58 3.27
2999 3054 7.093156 GGAGGTAAGTAGCTTCTTTAGGGTTTA 60.093 40.741 11.11 0.00 33.58 2.01
3000 3055 7.849160 AGGTAAGTAGCTTCTTTAGGGTTTAG 58.151 38.462 11.11 0.00 0.00 1.85
3001 3056 7.046652 GGTAAGTAGCTTCTTTAGGGTTTAGG 58.953 42.308 11.11 0.00 0.00 2.69
3002 3057 5.695424 AGTAGCTTCTTTAGGGTTTAGGG 57.305 43.478 0.00 0.00 0.00 3.53
3005 3060 4.919793 AGCTTCTTTAGGGTTTAGGGTTC 58.080 43.478 0.00 0.00 0.00 3.62
3007 3062 4.458295 GCTTCTTTAGGGTTTAGGGTTCAC 59.542 45.833 0.00 0.00 0.00 3.18
3009 3064 5.494390 TCTTTAGGGTTTAGGGTTCACTC 57.506 43.478 0.00 0.00 0.00 3.51
3010 3065 4.909088 TCTTTAGGGTTTAGGGTTCACTCA 59.091 41.667 0.00 0.00 0.00 3.41
3012 3067 5.853572 TTAGGGTTTAGGGTTCACTCAAT 57.146 39.130 0.00 0.00 0.00 2.57
3061 3763 8.814931 TCTAAATGTCCATCCATTGTTGATTTT 58.185 29.630 0.00 0.00 35.30 1.82
3088 3791 4.333649 CGTTCTGTGGCATTGATATTCAGT 59.666 41.667 0.00 0.00 0.00 3.41
3089 3792 5.503031 CGTTCTGTGGCATTGATATTCAGTC 60.503 44.000 0.00 0.00 0.00 3.51
3149 3852 6.534634 GGGTATATTATCTGCAAAGTGGTCT 58.465 40.000 0.00 0.00 0.00 3.85
3212 3915 7.995289 TGTTTATTGCCAATTATGTGAGGTAG 58.005 34.615 0.00 0.00 0.00 3.18
3215 3918 8.588290 TTATTGCCAATTATGTGAGGTAGTTT 57.412 30.769 0.00 0.00 0.00 2.66
3229 3932 9.182214 TGTGAGGTAGTTTATAAGTCGAACTAT 57.818 33.333 0.00 0.00 37.95 2.12
3237 3940 1.400737 AAGTCGAACTATCCCCTCCG 58.599 55.000 0.00 0.00 0.00 4.63
3412 4117 6.778821 TCCTTCTGATCCAAAATAAGTGTCA 58.221 36.000 0.00 0.00 0.00 3.58
3439 4144 8.147244 AGTTTTGAACTGGGTACTATAGATGT 57.853 34.615 6.78 0.00 41.01 3.06
3442 4147 7.727578 TTGAACTGGGTACTATAGATGTTGA 57.272 36.000 6.78 0.00 0.00 3.18
3443 4148 7.914427 TGAACTGGGTACTATAGATGTTGAT 57.086 36.000 6.78 0.00 0.00 2.57
3445 4150 9.601810 TGAACTGGGTACTATAGATGTTGATAT 57.398 33.333 6.78 0.00 0.00 1.63
3526 4233 9.213819 GGTCAAACTTTACAACGTTTTACTTAG 57.786 33.333 0.00 0.00 31.42 2.18
3527 4234 9.971744 GTCAAACTTTACAACGTTTTACTTAGA 57.028 29.630 0.00 0.00 31.46 2.10
3562 4269 4.062991 GCGAAGTAAAGAAACTGAGGGAA 58.937 43.478 0.00 0.00 0.00 3.97
3567 4274 7.764443 CGAAGTAAAGAAACTGAGGGAATATGA 59.236 37.037 0.00 0.00 0.00 2.15
3580 4287 5.510430 AGGGAATATGACTCTTTTCCAACC 58.490 41.667 3.25 0.00 39.52 3.77
3582 4289 6.447084 AGGGAATATGACTCTTTTCCAACCTA 59.553 38.462 3.25 0.00 39.52 3.08
3590 4297 4.137543 CTCTTTTCCAACCTAAGCTGTGT 58.862 43.478 0.00 0.00 0.00 3.72
3594 4301 6.775629 TCTTTTCCAACCTAAGCTGTGTAAAT 59.224 34.615 0.00 0.00 0.00 1.40
3651 4358 5.486526 TGTTGCAACTCCAGAAAATTTGTT 58.513 33.333 28.61 0.00 0.00 2.83
3660 4367 5.221880 TCCAGAAAATTTGTTGAATCGCTG 58.778 37.500 0.00 0.00 0.00 5.18
3700 4409 6.144402 AGTCGTACTATGTTGGTTTTACGTTG 59.856 38.462 0.00 0.00 0.00 4.10
3737 4447 8.398491 TGGAACTCTTTTTACGTAATCGATAC 57.602 34.615 9.18 0.00 40.62 2.24
3841 4551 5.304101 TCATTGCACCATAGTTCCTTTTTGT 59.696 36.000 0.00 0.00 0.00 2.83
3863 4576 7.823745 TGTATCATCTGCAGAACTAGTATGA 57.176 36.000 22.50 17.77 0.00 2.15
3892 4605 2.608546 GACATCATCTGCTCAGCACTTC 59.391 50.000 0.00 0.00 33.79 3.01
3894 4607 3.271729 CATCATCTGCTCAGCACTTCTT 58.728 45.455 0.00 0.00 33.79 2.52
3903 4616 3.806941 AGCACTTCTTGGTTGCTGA 57.193 47.368 0.00 0.00 34.25 4.26
4002 4715 7.062957 TCCCTGAGGAAATTATCAAGGATTTC 58.937 38.462 0.00 0.00 40.08 2.17
4096 4816 0.250234 TTTCCAGATCAGCGGTCCAG 59.750 55.000 0.00 0.00 0.00 3.86
4103 4823 0.179062 ATCAGCGGTCCAGATCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
4104 4824 2.169789 CAGCGGTCCAGATCTTGCG 61.170 63.158 0.00 0.00 0.00 4.85
4108 4828 0.103026 CGGTCCAGATCTTGCGATGA 59.897 55.000 0.00 0.00 0.00 2.92
4389 5113 3.619233 TGTTCTTTTAAGCGTTCCTGC 57.381 42.857 0.00 0.00 0.00 4.85
4402 5126 2.552315 CGTTCCTGCCAAATACTGTTGT 59.448 45.455 0.00 0.00 0.00 3.32
4548 5272 7.773224 TGATCCAGGTACTAATGTTTGTAATGG 59.227 37.037 10.70 10.70 36.02 3.16
4556 5280 6.146898 ACTAATGTTTGTAATGGCACGTTTC 58.853 36.000 0.00 0.00 0.00 2.78
4712 5436 9.619316 CCACGAGAATTAATTACACATTCAAAA 57.381 29.630 0.00 0.00 30.51 2.44
4782 5506 0.524862 CAACAGCTGAATGCCCTCAC 59.475 55.000 23.35 0.00 44.23 3.51
4842 5570 5.829924 AGTCTTCATCATGACCACAAAAACT 59.170 36.000 0.00 0.00 34.02 2.66
4900 5628 9.405587 TGACTTGCAAATAATAACTAAAACTGC 57.594 29.630 0.00 0.00 0.00 4.40
4942 5670 0.405198 TGTGCCCACCAGTCATGAAT 59.595 50.000 0.00 0.00 0.00 2.57
4943 5671 1.632920 TGTGCCCACCAGTCATGAATA 59.367 47.619 0.00 0.00 0.00 1.75
5014 5789 3.928727 AATGCAAGGTCACAAGTGATG 57.071 42.857 6.15 2.32 42.18 3.07
5086 5861 5.438833 ACTAGGATCCTACTACGGCATATC 58.561 45.833 18.00 0.00 0.00 1.63
5125 5900 1.381867 TGTTGGAAGGACCCATGGAT 58.618 50.000 15.22 0.00 35.87 3.41
5127 5902 3.130450 TGTTGGAAGGACCCATGGATAT 58.870 45.455 15.22 0.00 35.87 1.63
5179 5954 5.932619 TTATGAGTGTGTGTAGCCTATGT 57.067 39.130 0.00 0.00 0.00 2.29
5206 5981 3.363970 GCAATTGTCACTCTTGTGTACCG 60.364 47.826 7.40 0.00 44.14 4.02
5225 6000 7.654520 GTGTACCGCATCTAAGATTGGTAAATA 59.345 37.037 0.00 0.00 34.05 1.40
5226 6001 7.654520 TGTACCGCATCTAAGATTGGTAAATAC 59.345 37.037 0.00 0.00 34.05 1.89
5227 6002 6.827727 ACCGCATCTAAGATTGGTAAATACT 58.172 36.000 0.00 0.00 0.00 2.12
5228 6003 6.929606 ACCGCATCTAAGATTGGTAAATACTC 59.070 38.462 0.00 0.00 0.00 2.59
5229 6004 6.369065 CCGCATCTAAGATTGGTAAATACTCC 59.631 42.308 0.00 0.00 0.00 3.85
5230 6005 6.369065 CGCATCTAAGATTGGTAAATACTCCC 59.631 42.308 0.00 0.00 0.00 4.30
5231 6006 7.454225 GCATCTAAGATTGGTAAATACTCCCT 58.546 38.462 0.00 0.00 0.00 4.20
5232 6007 7.604545 GCATCTAAGATTGGTAAATACTCCCTC 59.395 40.741 0.00 0.00 0.00 4.30
5233 6008 7.613551 TCTAAGATTGGTAAATACTCCCTCC 57.386 40.000 0.00 0.00 0.00 4.30
5234 6009 4.957684 AGATTGGTAAATACTCCCTCCG 57.042 45.455 0.00 0.00 0.00 4.63
5235 6010 4.296056 AGATTGGTAAATACTCCCTCCGT 58.704 43.478 0.00 0.00 0.00 4.69
5236 6011 4.720273 AGATTGGTAAATACTCCCTCCGTT 59.280 41.667 0.00 0.00 0.00 4.44
5237 6012 4.476628 TTGGTAAATACTCCCTCCGTTC 57.523 45.455 0.00 0.00 0.00 3.95
5238 6013 2.767960 TGGTAAATACTCCCTCCGTTCC 59.232 50.000 0.00 0.00 0.00 3.62
5239 6014 2.103771 GGTAAATACTCCCTCCGTTCCC 59.896 54.545 0.00 0.00 0.00 3.97
5240 6015 2.265526 AAATACTCCCTCCGTTCCCT 57.734 50.000 0.00 0.00 0.00 4.20
5241 6016 3.409804 AAATACTCCCTCCGTTCCCTA 57.590 47.619 0.00 0.00 0.00 3.53
5242 6017 3.409804 AATACTCCCTCCGTTCCCTAA 57.590 47.619 0.00 0.00 0.00 2.69
5243 6018 3.632420 ATACTCCCTCCGTTCCCTAAT 57.368 47.619 0.00 0.00 0.00 1.73
5244 6019 4.754411 ATACTCCCTCCGTTCCCTAATA 57.246 45.455 0.00 0.00 0.00 0.98
5245 6020 3.632420 ACTCCCTCCGTTCCCTAATAT 57.368 47.619 0.00 0.00 0.00 1.28
5246 6021 4.754411 ACTCCCTCCGTTCCCTAATATA 57.246 45.455 0.00 0.00 0.00 0.86
5247 6022 5.083953 ACTCCCTCCGTTCCCTAATATAA 57.916 43.478 0.00 0.00 0.00 0.98
5248 6023 5.085219 ACTCCCTCCGTTCCCTAATATAAG 58.915 45.833 0.00 0.00 0.00 1.73
5249 6024 5.162903 ACTCCCTCCGTTCCCTAATATAAGA 60.163 44.000 0.00 0.00 0.00 2.10
5250 6025 5.082425 TCCCTCCGTTCCCTAATATAAGAC 58.918 45.833 0.00 0.00 0.00 3.01
5251 6026 4.222366 CCCTCCGTTCCCTAATATAAGACC 59.778 50.000 0.00 0.00 0.00 3.85
5252 6027 5.085219 CCTCCGTTCCCTAATATAAGACCT 58.915 45.833 0.00 0.00 0.00 3.85
5253 6028 5.543020 CCTCCGTTCCCTAATATAAGACCTT 59.457 44.000 0.00 0.00 0.00 3.50
5254 6029 6.042897 CCTCCGTTCCCTAATATAAGACCTTT 59.957 42.308 0.00 0.00 0.00 3.11
5255 6030 7.059202 TCCGTTCCCTAATATAAGACCTTTC 57.941 40.000 0.00 0.00 0.00 2.62
5256 6031 6.612456 TCCGTTCCCTAATATAAGACCTTTCA 59.388 38.462 0.00 0.00 0.00 2.69
5257 6032 6.929606 CCGTTCCCTAATATAAGACCTTTCAG 59.070 42.308 0.00 0.00 0.00 3.02
5258 6033 6.424207 CGTTCCCTAATATAAGACCTTTCAGC 59.576 42.308 0.00 0.00 0.00 4.26
5259 6034 7.510407 GTTCCCTAATATAAGACCTTTCAGCT 58.490 38.462 0.00 0.00 0.00 4.24
5260 6035 8.648693 GTTCCCTAATATAAGACCTTTCAGCTA 58.351 37.037 0.00 0.00 0.00 3.32
5261 6036 8.974292 TCCCTAATATAAGACCTTTCAGCTAT 57.026 34.615 0.00 0.00 0.00 2.97
5262 6037 9.393786 TCCCTAATATAAGACCTTTCAGCTATT 57.606 33.333 0.00 0.00 0.00 1.73
5275 6050 9.860898 ACCTTTCAGCTATTTCAAAATATTGAC 57.139 29.630 0.00 0.00 45.01 3.18
5318 6093 9.719355 TGAGTGAACATACATACTAAAATGTGT 57.281 29.630 0.00 0.00 40.29 3.72
5320 6095 9.944376 AGTGAACATACATACTAAAATGTGTCT 57.056 29.630 0.00 0.00 40.29 3.41
5338 6113 9.684448 AATGTGTCTAGATACATACGAATCAAG 57.316 33.333 28.78 0.00 41.35 3.02
5339 6114 8.446599 TGTGTCTAGATACATACGAATCAAGA 57.553 34.615 17.43 0.00 0.00 3.02
5340 6115 8.899771 TGTGTCTAGATACATACGAATCAAGAA 58.100 33.333 17.43 0.00 0.00 2.52
5341 6116 9.731819 GTGTCTAGATACATACGAATCAAGAAA 57.268 33.333 14.20 0.00 0.00 2.52
5346 6121 8.723942 AGATACATACGAATCAAGAAAAAGCT 57.276 30.769 0.00 0.00 0.00 3.74
5347 6122 9.817809 AGATACATACGAATCAAGAAAAAGCTA 57.182 29.630 0.00 0.00 0.00 3.32
5351 6126 9.612620 ACATACGAATCAAGAAAAAGCTAAAAG 57.387 29.630 0.00 0.00 0.00 2.27
5352 6127 9.825972 CATACGAATCAAGAAAAAGCTAAAAGA 57.174 29.630 0.00 0.00 0.00 2.52
5354 6129 8.956617 ACGAATCAAGAAAAAGCTAAAAGATC 57.043 30.769 0.00 0.00 0.00 2.75
5355 6130 8.787852 ACGAATCAAGAAAAAGCTAAAAGATCT 58.212 29.630 0.00 0.00 0.00 2.75
5356 6131 9.617975 CGAATCAAGAAAAAGCTAAAAGATCTT 57.382 29.630 0.88 0.88 0.00 2.40
5369 6144 9.930693 AGCTAAAAGATCTTATATTAGGGAACG 57.069 33.333 19.79 3.21 0.00 3.95
5370 6145 9.152595 GCTAAAAGATCTTATATTAGGGAACGG 57.847 37.037 19.79 2.70 0.00 4.44
5374 6149 7.469537 AGATCTTATATTAGGGAACGGAGTG 57.530 40.000 0.00 0.00 45.00 3.51
5375 6150 7.239438 AGATCTTATATTAGGGAACGGAGTGA 58.761 38.462 0.00 0.00 45.00 3.41
5376 6151 6.896021 TCTTATATTAGGGAACGGAGTGAG 57.104 41.667 0.00 0.00 45.00 3.51
5377 6152 6.371278 TCTTATATTAGGGAACGGAGTGAGT 58.629 40.000 0.00 0.00 45.00 3.41
5418 6193 8.678593 TTGTAATGTGTATTGGTGTTTCACTA 57.321 30.769 0.06 0.00 34.40 2.74
5725 6500 2.094675 GGTGGTTTGTGCTGCATAGAT 58.905 47.619 5.27 0.00 0.00 1.98
5803 6578 5.123227 TCACTAATACAATTAGTGCCCTGC 58.877 41.667 24.96 0.00 46.90 4.85
5815 6590 0.461548 TGCCCTGCGTCTTATCTGAG 59.538 55.000 0.00 0.00 0.00 3.35
5824 6599 5.105063 TGCGTCTTATCTGAGATTCAACAG 58.895 41.667 0.00 0.00 35.72 3.16
5876 6651 9.642327 TTGACATTGTGAAAATATTGAGAATGG 57.358 29.630 12.84 0.00 37.60 3.16
5877 6652 9.022884 TGACATTGTGAAAATATTGAGAATGGA 57.977 29.630 12.84 2.43 37.60 3.41
5920 6695 9.330063 TGTCAACATAGTCATATTTGAGATTCC 57.670 33.333 0.00 0.00 30.85 3.01
6069 6844 1.279271 ACTTGATAACAGCCTCCGCTT 59.721 47.619 0.00 0.00 45.55 4.68
6070 6845 1.936547 CTTGATAACAGCCTCCGCTTC 59.063 52.381 0.00 0.00 45.55 3.86
6071 6846 0.901827 TGATAACAGCCTCCGCTTCA 59.098 50.000 0.00 0.00 45.55 3.02
6197 6974 7.555087 AGGAACTTCAAAATGTTCATCACAAA 58.445 30.769 7.91 0.00 42.91 2.83
6225 7002 7.989741 ACTTTTGACTCCCTCATGTATATGAAG 59.010 37.037 3.59 1.44 42.48 3.02
6312 7089 0.898320 ACGCTTGCCTACTCTCATGT 59.102 50.000 0.00 0.00 0.00 3.21
6360 7137 0.034896 CGGGGTCAGCAGTACAAACT 59.965 55.000 0.00 0.00 35.91 2.66
6405 7182 0.606401 CACCAGGATCGCTTGTGGTT 60.606 55.000 0.00 0.00 41.52 3.67
6488 7265 2.725221 AAGCATCCCTTGGATCAGAC 57.275 50.000 0.00 0.00 40.98 3.51
6736 7563 7.073342 AGTTCTTTTTATTGGAGTATCGCAC 57.927 36.000 0.00 0.00 34.37 5.34
6923 7752 0.109319 CGTTGCAAAGGTACCATGCC 60.109 55.000 29.21 18.65 39.31 4.40
6942 7771 4.776349 TGCCTCTTTCACTCAAAACAGTA 58.224 39.130 0.00 0.00 0.00 2.74
6954 7783 8.081633 TCACTCAAAACAGTAAGCATTTAATGG 58.918 33.333 7.08 0.00 38.75 3.16
7168 7997 3.181445 ACTTGACAGTATTTCAGGCACCA 60.181 43.478 0.00 0.00 0.00 4.17
7246 8075 5.009710 TCTGTGTTACAGTTGAGACTCGATT 59.990 40.000 8.64 0.00 46.03 3.34
7276 8105 4.225042 TGGCATGAACAATAGACTACCACT 59.775 41.667 0.00 0.00 0.00 4.00
7316 8145 7.336679 TGTCTTTAACACTGCATATTAGCACAT 59.663 33.333 0.00 0.00 34.27 3.21
7411 8240 4.759516 TGAAGGATTTGCGTAACCTTTC 57.240 40.909 9.06 6.27 41.90 2.62
7428 8257 5.348164 ACCTTTCGAAACACTTTCCATTTG 58.652 37.500 6.47 0.00 36.30 2.32
7467 8296 2.362077 ACAACACTTTCAGGACCATTGC 59.638 45.455 0.00 0.00 0.00 3.56
7581 8410 7.768240 ACGGTTTTATTTCTTTTCTGTTGAGT 58.232 30.769 0.00 0.00 0.00 3.41
7816 8645 1.692411 AGAAAACAAGGCCAGTGACC 58.308 50.000 5.01 0.00 0.00 4.02
7932 8762 4.517285 AGACTTGTGCTCAGAAAGACAAA 58.483 39.130 0.00 0.00 30.12 2.83
8369 9200 2.029649 GCACAAGGCATGTTCTGTCATT 60.030 45.455 0.00 0.00 41.46 2.57
8402 9233 7.201857 GGATCTTTTCCCCTTTCAGATATGTTG 60.202 40.741 0.00 0.00 38.75 3.33
8404 9235 7.010160 TCTTTTCCCCTTTCAGATATGTTGTT 58.990 34.615 0.00 0.00 0.00 2.83
8443 9274 7.307042 CGCCTCATTCTCACAGTTCTATATTTG 60.307 40.741 0.00 0.00 0.00 2.32
8450 9284 7.851228 TCTCACAGTTCTATATTTGTCCATGT 58.149 34.615 0.00 0.00 0.00 3.21
8451 9285 7.981789 TCTCACAGTTCTATATTTGTCCATGTC 59.018 37.037 0.00 0.00 0.00 3.06
8452 9286 6.756542 TCACAGTTCTATATTTGTCCATGTCG 59.243 38.462 0.00 0.00 0.00 4.35
8864 9700 5.940192 TCAAGAAATGCATCGTTGTAACT 57.060 34.783 0.00 0.00 0.00 2.24
8887 9724 7.556844 ACTTTAGATTATGTGGAGTGTGTAGG 58.443 38.462 0.00 0.00 0.00 3.18
8896 9733 2.500098 TGGAGTGTGTAGGGTGATAAGC 59.500 50.000 0.00 0.00 0.00 3.09
9022 9859 1.860950 CAATACGGAGACCAATGAGCG 59.139 52.381 0.00 0.00 0.00 5.03
9147 9984 7.676683 TGCTAGGTTAGGAAGACTAAATGAT 57.323 36.000 0.00 0.00 42.99 2.45
9148 9985 8.777578 TGCTAGGTTAGGAAGACTAAATGATA 57.222 34.615 0.00 0.00 42.99 2.15
9149 9986 8.639761 TGCTAGGTTAGGAAGACTAAATGATAC 58.360 37.037 0.00 0.00 42.99 2.24
9197 10034 2.496899 TTTTGGATCACAGAGGGAGC 57.503 50.000 0.00 0.00 0.00 4.70
9345 10188 6.292381 GGAACATGATACGTAAGCTAAAGCAG 60.292 42.308 0.00 0.00 45.16 4.24
9350 10225 6.338146 TGATACGTAAGCTAAAGCAGTTGAT 58.662 36.000 0.00 0.00 45.16 2.57
9434 10309 4.993905 GGTATGGCACCTGTTTTAATCAC 58.006 43.478 0.00 0.00 44.79 3.06
9524 10399 9.770097 GAGGATTACACATTATGAATCTTCTCA 57.230 33.333 0.00 0.00 33.32 3.27
9536 10411 6.250344 TGAATCTTCTCACTCAAATTGCAG 57.750 37.500 0.00 0.00 0.00 4.41
9549 10424 1.174712 ATTGCAGCAAACTGGCTCGT 61.175 50.000 12.97 0.00 43.68 4.18
9565 10441 3.378427 GGCTCGTTGAAATCAGGCTATTT 59.622 43.478 0.00 0.00 0.00 1.40
9569 10445 6.623767 GCTCGTTGAAATCAGGCTATTTCTTT 60.624 38.462 20.18 5.37 43.34 2.52
9707 10583 5.258622 CGCTGACTCTTGTAATTATGCAAC 58.741 41.667 0.00 0.00 0.00 4.17
9874 10757 3.827302 ACAACGACTAGAATGGAGTCTGT 59.173 43.478 0.00 0.00 41.04 3.41
9876 10759 5.124138 ACAACGACTAGAATGGAGTCTGTAG 59.876 44.000 0.00 0.00 41.04 2.74
9907 10790 5.045797 AGTTTCTAGAATCCTAAGGCCGTTT 60.046 40.000 5.89 0.00 0.00 3.60
9908 10791 5.431179 TTCTAGAATCCTAAGGCCGTTTT 57.569 39.130 0.00 0.00 0.00 2.43
9909 10792 4.766375 TCTAGAATCCTAAGGCCGTTTTG 58.234 43.478 0.00 0.00 0.00 2.44
9910 10793 2.723273 AGAATCCTAAGGCCGTTTTGG 58.277 47.619 0.00 0.00 42.50 3.28
9920 10803 3.568093 CCGTTTTGGCAGGTCTTTG 57.432 52.632 0.00 0.00 0.00 2.77
9921 10804 1.028905 CCGTTTTGGCAGGTCTTTGA 58.971 50.000 0.00 0.00 0.00 2.69
9922 10805 1.269051 CCGTTTTGGCAGGTCTTTGAC 60.269 52.381 0.00 0.00 0.00 3.18
9935 10818 5.292671 GGTCTTTGACCGATTAAAGTTCC 57.707 43.478 0.67 0.00 43.14 3.62
9936 10819 4.758165 GGTCTTTGACCGATTAAAGTTCCA 59.242 41.667 0.67 0.00 43.14 3.53
9937 10820 5.414765 GGTCTTTGACCGATTAAAGTTCCAT 59.585 40.000 0.67 0.00 43.14 3.41
9938 10821 6.072119 GGTCTTTGACCGATTAAAGTTCCATT 60.072 38.462 0.67 0.00 43.14 3.16
9939 10822 7.368059 GTCTTTGACCGATTAAAGTTCCATTT 58.632 34.615 0.00 0.00 35.82 2.32
9940 10823 7.537649 GTCTTTGACCGATTAAAGTTCCATTTC 59.462 37.037 0.00 0.00 35.82 2.17
9941 10824 6.885952 TTGACCGATTAAAGTTCCATTTCA 57.114 33.333 0.00 0.00 0.00 2.69
9942 10825 6.494893 TGACCGATTAAAGTTCCATTTCAG 57.505 37.500 0.00 0.00 0.00 3.02
9943 10826 6.234920 TGACCGATTAAAGTTCCATTTCAGA 58.765 36.000 0.00 0.00 0.00 3.27
9944 10827 6.371548 TGACCGATTAAAGTTCCATTTCAGAG 59.628 38.462 0.00 0.00 0.00 3.35
9945 10828 6.472887 ACCGATTAAAGTTCCATTTCAGAGA 58.527 36.000 0.00 0.00 0.00 3.10
9946 10829 6.595716 ACCGATTAAAGTTCCATTTCAGAGAG 59.404 38.462 0.00 0.00 0.00 3.20
9947 10830 6.818644 CCGATTAAAGTTCCATTTCAGAGAGA 59.181 38.462 0.00 0.00 0.00 3.10
9948 10831 7.010923 CCGATTAAAGTTCCATTTCAGAGAGAG 59.989 40.741 0.00 0.00 0.00 3.20
9949 10832 7.761704 CGATTAAAGTTCCATTTCAGAGAGAGA 59.238 37.037 0.00 0.00 0.00 3.10
9950 10833 8.785329 ATTAAAGTTCCATTTCAGAGAGAGAC 57.215 34.615 0.00 0.00 0.00 3.36
9951 10834 4.448537 AGTTCCATTTCAGAGAGAGACG 57.551 45.455 0.00 0.00 0.00 4.18
9952 10835 3.194542 AGTTCCATTTCAGAGAGAGACGG 59.805 47.826 0.00 0.00 0.00 4.79
9953 10836 3.087370 TCCATTTCAGAGAGAGACGGA 57.913 47.619 0.00 0.00 0.00 4.69
9954 10837 3.431415 TCCATTTCAGAGAGAGACGGAA 58.569 45.455 0.00 0.00 0.00 4.30
9955 10838 3.832490 TCCATTTCAGAGAGAGACGGAAA 59.168 43.478 0.00 0.00 32.66 3.13
9956 10839 4.283467 TCCATTTCAGAGAGAGACGGAAAA 59.717 41.667 0.00 0.00 31.98 2.29
9957 10840 4.997395 CCATTTCAGAGAGAGACGGAAAAA 59.003 41.667 0.00 0.00 31.98 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
533 534 4.764771 CCTGCCACCCACCCATGG 62.765 72.222 4.14 4.14 46.81 3.66
534 535 4.764771 CCCTGCCACCCACCCATG 62.765 72.222 0.00 0.00 0.00 3.66
569 570 2.202756 CCTTGTCCTACGCCTCGC 60.203 66.667 0.00 0.00 0.00 5.03
570 571 1.030488 TCTCCTTGTCCTACGCCTCG 61.030 60.000 0.00 0.00 0.00 4.63
571 572 0.741915 CTCTCCTTGTCCTACGCCTC 59.258 60.000 0.00 0.00 0.00 4.70
572 573 0.684805 CCTCTCCTTGTCCTACGCCT 60.685 60.000 0.00 0.00 0.00 5.52
573 574 0.683504 TCCTCTCCTTGTCCTACGCC 60.684 60.000 0.00 0.00 0.00 5.68
574 575 0.741915 CTCCTCTCCTTGTCCTACGC 59.258 60.000 0.00 0.00 0.00 4.42
575 576 2.092861 TCTCTCCTCTCCTTGTCCTACG 60.093 54.545 0.00 0.00 0.00 3.51
576 577 3.053917 ACTCTCTCCTCTCCTTGTCCTAC 60.054 52.174 0.00 0.00 0.00 3.18
577 578 3.053991 CACTCTCTCCTCTCCTTGTCCTA 60.054 52.174 0.00 0.00 0.00 2.94
578 579 2.000048 ACTCTCTCCTCTCCTTGTCCT 59.000 52.381 0.00 0.00 0.00 3.85
579 580 2.099405 CACTCTCTCCTCTCCTTGTCC 58.901 57.143 0.00 0.00 0.00 4.02
580 581 1.476488 GCACTCTCTCCTCTCCTTGTC 59.524 57.143 0.00 0.00 0.00 3.18
581 582 1.555967 GCACTCTCTCCTCTCCTTGT 58.444 55.000 0.00 0.00 0.00 3.16
582 583 0.455410 CGCACTCTCTCCTCTCCTTG 59.545 60.000 0.00 0.00 0.00 3.61
583 584 0.682855 CCGCACTCTCTCCTCTCCTT 60.683 60.000 0.00 0.00 0.00 3.36
584 585 1.077068 CCGCACTCTCTCCTCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
585 586 2.781158 GCCGCACTCTCTCCTCTCC 61.781 68.421 0.00 0.00 0.00 3.71
586 587 2.804856 GCCGCACTCTCTCCTCTC 59.195 66.667 0.00 0.00 0.00 3.20
587 588 3.137459 CGCCGCACTCTCTCCTCT 61.137 66.667 0.00 0.00 0.00 3.69
588 589 4.863925 GCGCCGCACTCTCTCCTC 62.864 72.222 3.15 0.00 0.00 3.71
628 629 3.824028 TATTTCGGGCGCCAGCTACAG 62.824 57.143 30.85 9.80 44.37 2.74
629 630 1.962321 TATTTCGGGCGCCAGCTACA 61.962 55.000 30.85 4.94 44.37 2.74
630 631 1.227438 TATTTCGGGCGCCAGCTAC 60.227 57.895 30.85 9.46 44.37 3.58
631 632 1.227438 GTATTTCGGGCGCCAGCTA 60.227 57.895 30.85 15.69 44.37 3.32
632 633 2.513897 GTATTTCGGGCGCCAGCT 60.514 61.111 30.85 14.54 44.37 4.24
633 634 3.937062 CGTATTTCGGGCGCCAGC 61.937 66.667 30.85 11.20 44.18 4.85
634 635 3.937062 GCGTATTTCGGGCGCCAG 61.937 66.667 30.85 26.21 44.67 4.85
651 652 2.503034 GAAAACACTTACCCGCGCGG 62.503 60.000 41.00 41.00 37.81 6.46
652 653 1.154543 GAAAACACTTACCCGCGCG 60.155 57.895 25.67 25.67 0.00 6.86
653 654 0.308376 TTGAAAACACTTACCCGCGC 59.692 50.000 0.00 0.00 0.00 6.86
677 678 2.540228 GCTATAACGGGTTGGGCGC 61.540 63.158 0.00 0.00 0.00 6.53
678 679 1.153329 TGCTATAACGGGTTGGGCG 60.153 57.895 0.00 0.00 0.00 6.13
679 680 1.433837 CGTGCTATAACGGGTTGGGC 61.434 60.000 0.00 0.00 39.89 5.36
680 681 1.433837 GCGTGCTATAACGGGTTGGG 61.434 60.000 0.00 0.00 43.75 4.12
681 682 2.011453 GCGTGCTATAACGGGTTGG 58.989 57.895 0.00 0.00 43.75 3.77
686 687 2.913265 GACGCGCGTGCTATAACGG 61.913 63.158 42.90 4.22 43.75 4.44
687 688 2.533285 GACGCGCGTGCTATAACG 59.467 61.111 42.90 8.36 46.30 3.18
688 689 2.533285 CGACGCGCGTGCTATAAC 59.467 61.111 42.90 22.72 39.65 1.89
744 745 2.043676 ATTAGGCCGTTTTAGCGCGC 62.044 55.000 26.66 26.66 0.00 6.86
745 746 0.375803 AATTAGGCCGTTTTAGCGCG 59.624 50.000 0.00 0.00 0.00 6.86
746 747 2.554806 AAATTAGGCCGTTTTAGCGC 57.445 45.000 0.00 0.00 0.00 5.92
747 748 3.306703 TCGTAAATTAGGCCGTTTTAGCG 59.693 43.478 0.00 9.54 0.00 4.26
748 749 4.581493 GTCGTAAATTAGGCCGTTTTAGC 58.419 43.478 0.00 0.00 0.00 3.09
749 750 4.780013 GCGTCGTAAATTAGGCCGTTTTAG 60.780 45.833 0.00 0.00 0.00 1.85
750 751 3.061965 GCGTCGTAAATTAGGCCGTTTTA 59.938 43.478 0.00 0.13 0.00 1.52
751 752 2.159667 GCGTCGTAAATTAGGCCGTTTT 60.160 45.455 0.00 1.19 0.00 2.43
752 753 1.394572 GCGTCGTAAATTAGGCCGTTT 59.605 47.619 0.00 2.92 0.00 3.60
753 754 1.001624 GCGTCGTAAATTAGGCCGTT 58.998 50.000 0.00 0.00 0.00 4.44
754 755 1.141591 CGCGTCGTAAATTAGGCCGT 61.142 55.000 0.00 0.00 0.00 5.68
755 756 1.556484 CGCGTCGTAAATTAGGCCG 59.444 57.895 0.00 0.00 0.00 6.13
756 757 1.929376 CCGCGTCGTAAATTAGGCC 59.071 57.895 4.92 0.00 0.00 5.19
757 758 1.274770 GCCGCGTCGTAAATTAGGC 59.725 57.895 4.92 0.00 36.08 3.93
758 759 1.556484 CGCCGCGTCGTAAATTAGG 59.444 57.895 0.00 0.00 0.00 2.69
759 760 1.084478 GCGCCGCGTCGTAAATTAG 60.084 57.895 12.39 0.00 0.00 1.73
760 761 0.248417 TAGCGCCGCGTCGTAAATTA 60.248 50.000 12.39 0.00 0.00 1.40
761 762 1.477030 CTAGCGCCGCGTCGTAAATT 61.477 55.000 12.39 0.00 0.00 1.82
762 763 1.942712 CTAGCGCCGCGTCGTAAAT 60.943 57.895 12.39 0.00 0.00 1.40
763 764 2.577644 CTAGCGCCGCGTCGTAAA 60.578 61.111 12.39 0.00 0.00 2.01
764 765 2.801113 AAACTAGCGCCGCGTCGTAA 62.801 55.000 12.39 0.00 0.00 3.18
765 766 1.976478 TAAACTAGCGCCGCGTCGTA 61.976 55.000 12.39 1.48 0.00 3.43
766 767 3.326889 TAAACTAGCGCCGCGTCGT 62.327 57.895 12.39 6.29 0.00 4.34
767 768 2.565394 CTAAACTAGCGCCGCGTCG 61.565 63.158 15.34 4.62 0.00 5.12
768 769 2.857415 GCTAAACTAGCGCCGCGTC 61.857 63.158 15.34 6.86 42.62 5.19
769 770 2.884207 GCTAAACTAGCGCCGCGT 60.884 61.111 15.34 3.90 42.62 6.01
777 778 0.370273 CAACAGCCGCGCTAAACTAG 59.630 55.000 5.56 0.00 36.40 2.57
778 779 1.017177 CCAACAGCCGCGCTAAACTA 61.017 55.000 5.56 0.00 36.40 2.24
779 780 2.325082 CCAACAGCCGCGCTAAACT 61.325 57.895 5.56 0.00 36.40 2.66
780 781 2.175811 CCAACAGCCGCGCTAAAC 59.824 61.111 5.56 0.00 36.40 2.01
781 782 2.031314 TCCAACAGCCGCGCTAAA 59.969 55.556 5.56 0.00 36.40 1.85
782 783 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
783 784 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
784 785 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
785 786 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
786 787 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
787 788 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
788 789 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
799 800 0.741221 GGTTCACGGGTGAGAGCATC 60.741 60.000 1.37 0.00 41.13 3.91
800 801 1.296715 GGTTCACGGGTGAGAGCAT 59.703 57.895 1.37 0.00 41.13 3.79
801 802 2.741092 GGTTCACGGGTGAGAGCA 59.259 61.111 1.37 0.00 41.13 4.26
802 803 2.047179 GGGTTCACGGGTGAGAGC 60.047 66.667 1.37 3.78 41.13 4.09
803 804 1.592223 GAGGGTTCACGGGTGAGAG 59.408 63.158 1.37 0.00 41.13 3.20
804 805 2.273179 CGAGGGTTCACGGGTGAGA 61.273 63.158 1.37 0.00 41.13 3.27
825 826 5.127845 TGTTCTGTCATTTGTTGGGCTTTTA 59.872 36.000 0.00 0.00 0.00 1.52
835 836 3.496870 GGACTCCCTGTTCTGTCATTTGT 60.497 47.826 0.00 0.00 0.00 2.83
976 978 1.214325 CGGCGATTTTGGGGTTTCC 59.786 57.895 0.00 0.00 0.00 3.13
1052 1054 1.717937 GCATGCTCTGCGTACTTGG 59.282 57.895 11.37 0.00 41.97 3.61
1074 1076 2.262915 AGGAACTCGGCGAGCTTG 59.737 61.111 34.76 14.59 32.04 4.01
1121 1123 2.365635 CGGGGTGGAGGAGGATGT 60.366 66.667 0.00 0.00 0.00 3.06
1201 1203 1.078115 GGTTAGGGTTTGGGGAGGAA 58.922 55.000 0.00 0.00 0.00 3.36
1315 1323 4.789075 GGCGGCGCTGTCGAAGTA 62.789 66.667 32.30 0.00 38.10 2.24
1372 1381 1.273886 AGCGAAGAGAAGGAAGGTGTC 59.726 52.381 0.00 0.00 0.00 3.67
1376 1385 4.500716 GGATAGAAGCGAAGAGAAGGAAGG 60.501 50.000 0.00 0.00 0.00 3.46
1384 1393 0.319125 GCGGGGATAGAAGCGAAGAG 60.319 60.000 0.00 0.00 0.00 2.85
1435 1453 0.764271 TGAGGATGCACAACACCTCA 59.236 50.000 18.01 18.01 45.92 3.86
1469 1487 1.067582 GCTCGTCCGGATTACCCAG 59.932 63.158 7.81 0.00 34.14 4.45
1590 1608 2.987413 TCTTGCAAGCATTACAACGG 57.013 45.000 21.99 0.00 26.68 4.44
1647 1665 2.008268 GCATCACCGCCAAATCAGGG 62.008 60.000 0.00 0.00 0.00 4.45
1697 1715 1.779061 GCTTCACCCTCACCTTCCCA 61.779 60.000 0.00 0.00 0.00 4.37
1736 1754 2.355513 CCTGATCACAGTCCCCTTCAAG 60.356 54.545 0.00 0.00 42.05 3.02
1757 1775 3.736433 CGATCATCTTCACACCTCCTGAC 60.736 52.174 0.00 0.00 0.00 3.51
1763 1781 1.759445 CCCTCGATCATCTTCACACCT 59.241 52.381 0.00 0.00 0.00 4.00
1785 1803 0.960364 CTGCATTGGTACCACCGCTT 60.960 55.000 26.89 5.69 42.58 4.68
2111 2152 5.082059 GCAATGTAACAGAAGATGACAACG 58.918 41.667 0.00 0.00 0.00 4.10
2192 2234 2.047844 CAGACGTGCTCACCCAGG 60.048 66.667 0.00 0.00 0.00 4.45
2204 2246 1.324736 GCTTAAACTCGGATGCAGACG 59.675 52.381 6.49 6.49 0.00 4.18
2261 2304 4.864247 CACACTGCAAGCTTTTAAACAAGT 59.136 37.500 0.00 0.00 37.60 3.16
2262 2305 5.101628 TCACACTGCAAGCTTTTAAACAAG 58.898 37.500 0.00 0.00 37.60 3.16
2264 2307 4.397730 TCTCACACTGCAAGCTTTTAAACA 59.602 37.500 0.00 0.00 37.60 2.83
2265 2308 4.920376 TCTCACACTGCAAGCTTTTAAAC 58.080 39.130 0.00 0.00 37.60 2.01
2267 2310 3.565482 CCTCTCACACTGCAAGCTTTTAA 59.435 43.478 0.00 0.00 37.60 1.52
2268 2311 3.141398 CCTCTCACACTGCAAGCTTTTA 58.859 45.455 0.00 0.00 37.60 1.52
2269 2312 1.952296 CCTCTCACACTGCAAGCTTTT 59.048 47.619 0.00 0.00 37.60 2.27
2270 2313 1.602311 CCTCTCACACTGCAAGCTTT 58.398 50.000 0.00 0.00 37.60 3.51
2272 2315 1.302351 GCCTCTCACACTGCAAGCT 60.302 57.895 0.00 0.00 37.60 3.74
2273 2316 0.888285 AAGCCTCTCACACTGCAAGC 60.888 55.000 0.00 0.00 37.60 4.01
2275 2318 2.104792 AGTTAAGCCTCTCACACTGCAA 59.895 45.455 0.00 0.00 0.00 4.08
2278 2321 3.733337 ACAAGTTAAGCCTCTCACACTG 58.267 45.455 0.00 0.00 0.00 3.66
2279 2322 4.423625 AACAAGTTAAGCCTCTCACACT 57.576 40.909 0.00 0.00 0.00 3.55
2280 2323 6.613755 TTAAACAAGTTAAGCCTCTCACAC 57.386 37.500 0.00 0.00 0.00 3.82
2282 2325 6.637254 GCTTTTAAACAAGTTAAGCCTCTCAC 59.363 38.462 7.40 0.00 36.18 3.51
2283 2326 6.546034 AGCTTTTAAACAAGTTAAGCCTCTCA 59.454 34.615 12.74 0.00 41.52 3.27
2284 2327 6.971602 AGCTTTTAAACAAGTTAAGCCTCTC 58.028 36.000 12.74 0.00 41.52 3.20
2286 2329 6.074302 GCAAGCTTTTAAACAAGTTAAGCCTC 60.074 38.462 12.74 2.92 41.52 4.70
2287 2330 5.753438 GCAAGCTTTTAAACAAGTTAAGCCT 59.247 36.000 12.74 1.36 41.52 4.58
2288 2331 5.522097 TGCAAGCTTTTAAACAAGTTAAGCC 59.478 36.000 12.74 2.75 41.52 4.35
2289 2332 6.255670 ACTGCAAGCTTTTAAACAAGTTAAGC 59.744 34.615 0.00 9.71 41.04 3.09
2290 2333 7.275560 ACACTGCAAGCTTTTAAACAAGTTAAG 59.724 33.333 0.00 0.00 37.60 1.85
2291 2334 7.062839 CACACTGCAAGCTTTTAAACAAGTTAA 59.937 33.333 0.00 0.00 37.60 2.01
2292 2335 6.529829 CACACTGCAAGCTTTTAAACAAGTTA 59.470 34.615 0.00 0.00 37.60 2.24
2293 2336 5.348451 CACACTGCAAGCTTTTAAACAAGTT 59.652 36.000 0.00 0.00 37.60 2.66
2294 2337 4.864247 CACACTGCAAGCTTTTAAACAAGT 59.136 37.500 0.00 0.00 37.60 3.16
2295 2338 5.101628 TCACACTGCAAGCTTTTAAACAAG 58.898 37.500 0.00 0.00 37.60 3.16
2296 2339 5.065704 TCACACTGCAAGCTTTTAAACAA 57.934 34.783 0.00 0.00 37.60 2.83
2297 2340 4.397730 TCTCACACTGCAAGCTTTTAAACA 59.602 37.500 0.00 0.00 37.60 2.83
2298 2341 4.920376 TCTCACACTGCAAGCTTTTAAAC 58.080 39.130 0.00 0.00 37.60 2.01
2299 2342 4.036734 CCTCTCACACTGCAAGCTTTTAAA 59.963 41.667 0.00 0.00 37.60 1.52
2300 2343 3.565482 CCTCTCACACTGCAAGCTTTTAA 59.435 43.478 0.00 0.00 37.60 1.52
2301 2344 3.141398 CCTCTCACACTGCAAGCTTTTA 58.859 45.455 0.00 0.00 37.60 1.52
2302 2345 1.952296 CCTCTCACACTGCAAGCTTTT 59.048 47.619 0.00 0.00 37.60 2.27
2303 2346 1.602311 CCTCTCACACTGCAAGCTTT 58.398 50.000 0.00 0.00 37.60 3.51
2304 2347 0.888285 GCCTCTCACACTGCAAGCTT 60.888 55.000 0.00 0.00 37.60 3.74
2305 2348 1.302351 GCCTCTCACACTGCAAGCT 60.302 57.895 0.00 0.00 37.60 3.74
2306 2349 0.888285 AAGCCTCTCACACTGCAAGC 60.888 55.000 0.00 0.00 37.60 4.01
2307 2350 2.462456 TAAGCCTCTCACACTGCAAG 57.538 50.000 0.00 0.00 42.29 4.01
2308 2351 2.104792 AGTTAAGCCTCTCACACTGCAA 59.895 45.455 0.00 0.00 0.00 4.08
2309 2352 1.694150 AGTTAAGCCTCTCACACTGCA 59.306 47.619 0.00 0.00 0.00 4.41
2310 2353 2.464157 AGTTAAGCCTCTCACACTGC 57.536 50.000 0.00 0.00 0.00 4.40
2311 2354 4.264460 AGAAGTTAAGCCTCTCACACTG 57.736 45.455 0.00 0.00 0.00 3.66
2312 2355 4.965200 AAGAAGTTAAGCCTCTCACACT 57.035 40.909 0.00 0.00 0.00 3.55
2313 2356 7.492352 TTTAAAGAAGTTAAGCCTCTCACAC 57.508 36.000 0.00 0.00 33.22 3.82
2314 2357 6.204882 GCTTTAAAGAAGTTAAGCCTCTCACA 59.795 38.462 19.48 0.00 33.22 3.58
2315 2358 6.204882 TGCTTTAAAGAAGTTAAGCCTCTCAC 59.795 38.462 19.48 0.00 33.22 3.51
2316 2359 6.296026 TGCTTTAAAGAAGTTAAGCCTCTCA 58.704 36.000 19.48 0.00 33.22 3.27
2363 2409 7.723616 TCACTTCCTCAAAACCATGATCTAAAA 59.276 33.333 0.00 0.00 0.00 1.52
2364 2410 7.230747 TCACTTCCTCAAAACCATGATCTAAA 58.769 34.615 0.00 0.00 0.00 1.85
2365 2411 6.778821 TCACTTCCTCAAAACCATGATCTAA 58.221 36.000 0.00 0.00 0.00 2.10
2366 2412 6.213397 TCTCACTTCCTCAAAACCATGATCTA 59.787 38.462 0.00 0.00 0.00 1.98
2367 2413 5.013495 TCTCACTTCCTCAAAACCATGATCT 59.987 40.000 0.00 0.00 0.00 2.75
2368 2414 5.123027 GTCTCACTTCCTCAAAACCATGATC 59.877 44.000 0.00 0.00 0.00 2.92
2369 2415 5.006386 GTCTCACTTCCTCAAAACCATGAT 58.994 41.667 0.00 0.00 0.00 2.45
2370 2416 4.141505 TGTCTCACTTCCTCAAAACCATGA 60.142 41.667 0.00 0.00 0.00 3.07
2371 2417 4.023707 GTGTCTCACTTCCTCAAAACCATG 60.024 45.833 0.00 0.00 0.00 3.66
2372 2418 4.137543 GTGTCTCACTTCCTCAAAACCAT 58.862 43.478 0.00 0.00 0.00 3.55
2373 2419 3.054728 TGTGTCTCACTTCCTCAAAACCA 60.055 43.478 1.72 0.00 35.11 3.67
2374 2420 3.541632 TGTGTCTCACTTCCTCAAAACC 58.458 45.455 1.72 0.00 35.11 3.27
2375 2421 5.296780 TGAATGTGTCTCACTTCCTCAAAAC 59.703 40.000 1.72 0.00 35.11 2.43
2376 2422 5.436175 TGAATGTGTCTCACTTCCTCAAAA 58.564 37.500 1.72 0.00 35.11 2.44
2377 2423 5.034852 TGAATGTGTCTCACTTCCTCAAA 57.965 39.130 1.72 0.00 35.11 2.69
2378 2424 4.344968 TCTGAATGTGTCTCACTTCCTCAA 59.655 41.667 1.72 0.00 35.11 3.02
2379 2425 3.897505 TCTGAATGTGTCTCACTTCCTCA 59.102 43.478 1.72 0.00 35.11 3.86
2380 2426 4.219507 TCTCTGAATGTGTCTCACTTCCTC 59.780 45.833 1.72 0.00 35.11 3.71
2381 2427 4.155709 TCTCTGAATGTGTCTCACTTCCT 58.844 43.478 1.72 0.00 35.11 3.36
2382 2428 4.527509 TCTCTGAATGTGTCTCACTTCC 57.472 45.455 1.72 0.00 35.11 3.46
2383 2429 5.163874 GCAATCTCTGAATGTGTCTCACTTC 60.164 44.000 1.72 4.12 35.11 3.01
2384 2430 4.694509 GCAATCTCTGAATGTGTCTCACTT 59.305 41.667 1.72 0.00 35.11 3.16
2479 2525 9.614792 AATTAAGGTCAGGTGTCTTTATGATAC 57.385 33.333 0.00 0.00 36.27 2.24
2635 2684 7.061094 CAGAAAACAAAAGACTGTTTCTCACAC 59.939 37.037 2.45 0.00 46.32 3.82
2636 2685 7.083858 CAGAAAACAAAAGACTGTTTCTCACA 58.916 34.615 2.45 0.00 46.32 3.58
2992 3047 4.354087 AGAATTGAGTGAACCCTAAACCCT 59.646 41.667 0.00 0.00 0.00 4.34
2995 3050 7.511959 AAGAAGAATTGAGTGAACCCTAAAC 57.488 36.000 0.00 0.00 0.00 2.01
2997 3052 7.470009 GCAAAAGAAGAATTGAGTGAACCCTAA 60.470 37.037 0.00 0.00 0.00 2.69
2998 3053 6.016276 GCAAAAGAAGAATTGAGTGAACCCTA 60.016 38.462 0.00 0.00 0.00 3.53
2999 3054 5.221322 GCAAAAGAAGAATTGAGTGAACCCT 60.221 40.000 0.00 0.00 0.00 4.34
3000 3055 4.984785 GCAAAAGAAGAATTGAGTGAACCC 59.015 41.667 0.00 0.00 0.00 4.11
3001 3056 5.689068 CAGCAAAAGAAGAATTGAGTGAACC 59.311 40.000 0.00 0.00 0.00 3.62
3002 3057 5.689068 CCAGCAAAAGAAGAATTGAGTGAAC 59.311 40.000 0.00 0.00 0.00 3.18
3005 3060 5.443185 TCCAGCAAAAGAAGAATTGAGTG 57.557 39.130 0.00 0.00 0.00 3.51
3010 3065 5.613329 TGCAATTCCAGCAAAAGAAGAATT 58.387 33.333 0.00 0.00 39.39 2.17
3012 3067 4.669206 TGCAATTCCAGCAAAAGAAGAA 57.331 36.364 0.00 0.00 39.39 2.52
3061 3763 1.028130 TCAATGCCACAGAACGCAAA 58.972 45.000 0.00 0.00 38.75 3.68
3066 3768 5.355071 TGACTGAATATCAATGCCACAGAAC 59.645 40.000 0.00 0.00 0.00 3.01
3074 3777 6.187125 ACACACTTGACTGAATATCAATGC 57.813 37.500 0.00 0.00 35.57 3.56
3088 3791 4.753516 TCTGGAGAAAGAACACACTTGA 57.246 40.909 0.00 0.00 0.00 3.02
3089 3792 5.059161 TCATCTGGAGAAAGAACACACTTG 58.941 41.667 0.00 0.00 0.00 3.16
3149 3852 3.937814 ACGCACATCCTTAACATCAGAA 58.062 40.909 0.00 0.00 0.00 3.02
3212 3915 6.453943 GGAGGGGATAGTTCGACTTATAAAC 58.546 44.000 0.00 0.00 0.00 2.01
3215 3918 4.202503 ACGGAGGGGATAGTTCGACTTATA 60.203 45.833 0.00 0.00 0.00 0.98
3229 3932 4.442401 AAGTAAAAAGAAACGGAGGGGA 57.558 40.909 0.00 0.00 0.00 4.81
3330 4035 7.830697 CCATGCTGGGTCTAATGATATTCATTA 59.169 37.037 9.05 9.05 39.69 1.90
3334 4039 5.809001 TCCATGCTGGGTCTAATGATATTC 58.191 41.667 2.86 0.00 38.32 1.75
3384 4089 8.552296 ACACTTATTTTGGATCAGAAGGAGTAT 58.448 33.333 0.00 0.00 0.00 2.12
3391 4096 6.998074 ACTGTGACACTTATTTTGGATCAGAA 59.002 34.615 7.20 0.00 0.00 3.02
3394 4099 7.581213 AAACTGTGACACTTATTTTGGATCA 57.419 32.000 7.20 0.00 0.00 2.92
3434 4139 9.573166 TCCGATCCAAAATAAATATCAACATCT 57.427 29.630 0.00 0.00 0.00 2.90
3435 4140 9.831737 CTCCGATCCAAAATAAATATCAACATC 57.168 33.333 0.00 0.00 0.00 3.06
3437 4142 7.230510 CCCTCCGATCCAAAATAAATATCAACA 59.769 37.037 0.00 0.00 0.00 3.33
3438 4143 7.447238 TCCCTCCGATCCAAAATAAATATCAAC 59.553 37.037 0.00 0.00 0.00 3.18
3439 4144 7.522542 TCCCTCCGATCCAAAATAAATATCAA 58.477 34.615 0.00 0.00 0.00 2.57
3442 4147 7.091533 ACTCCCTCCGATCCAAAATAAATAT 57.908 36.000 0.00 0.00 0.00 1.28
3443 4148 6.509523 ACTCCCTCCGATCCAAAATAAATA 57.490 37.500 0.00 0.00 0.00 1.40
3445 4150 4.855298 ACTCCCTCCGATCCAAAATAAA 57.145 40.909 0.00 0.00 0.00 1.40
3541 4248 7.764443 TCATATTCCCTCAGTTTCTTTACTTCG 59.236 37.037 0.00 0.00 0.00 3.79
3555 4262 6.180472 GTTGGAAAAGAGTCATATTCCCTCA 58.820 40.000 15.11 2.17 40.49 3.86
3562 4269 6.825721 CAGCTTAGGTTGGAAAAGAGTCATAT 59.174 38.462 0.00 0.00 0.00 1.78
3567 4274 4.137543 CACAGCTTAGGTTGGAAAAGAGT 58.862 43.478 0.00 0.00 0.00 3.24
3621 4328 3.344904 CTGGAGTTGCAACAACTTCAG 57.655 47.619 30.11 26.23 44.66 3.02
3674 4383 6.215845 ACGTAAAACCAACATAGTACGACTT 58.784 36.000 7.91 0.00 38.11 3.01
3675 4384 5.772521 ACGTAAAACCAACATAGTACGACT 58.227 37.500 7.91 0.00 38.11 4.18
3709 4419 8.984891 TCGATTACGTAAAAAGAGTTCCATTA 57.015 30.769 12.81 0.00 40.69 1.90
3841 4551 6.568653 GCGTCATACTAGTTCTGCAGATGATA 60.569 42.308 19.04 9.78 0.00 2.15
3863 4576 0.816825 GCAGATGATGTCCATGGCGT 60.817 55.000 6.96 3.49 35.17 5.68
3892 4605 3.209410 ACTTCAGAACTCAGCAACCAAG 58.791 45.455 0.00 0.00 0.00 3.61
3894 4607 3.281727 AACTTCAGAACTCAGCAACCA 57.718 42.857 0.00 0.00 0.00 3.67
3903 4616 7.396540 AAGACATTGTTCAAACTTCAGAACT 57.603 32.000 0.00 0.00 43.38 3.01
4002 4715 2.932663 TTCTGCCCAGAAAAGCTCG 58.067 52.632 8.19 0.00 43.79 5.03
4058 4771 0.121197 AACATCAAGGAGGAGGGGGA 59.879 55.000 0.00 0.00 0.00 4.81
4059 4772 1.002857 AAACATCAAGGAGGAGGGGG 58.997 55.000 0.00 0.00 0.00 5.40
4064 4777 4.289410 TGATCTGGAAAACATCAAGGAGGA 59.711 41.667 0.00 0.00 29.12 3.71
4161 4883 7.450124 TGTAGTACCGATTAAATGGCAAAAA 57.550 32.000 0.00 0.00 0.00 1.94
4166 4888 6.673154 AACTTGTAGTACCGATTAAATGGC 57.327 37.500 0.00 0.00 0.00 4.40
4328 5051 3.811083 TCCAGACGAGGCTTAAAAACAA 58.189 40.909 0.00 0.00 0.00 2.83
4447 5171 0.242017 GCTGCACTCCACCAATCAAC 59.758 55.000 0.00 0.00 0.00 3.18
4548 5272 6.018425 ACTCATCATATCTCAATGAAACGTGC 60.018 38.462 0.00 0.00 39.25 5.34
4594 5318 6.570692 AGTCTAAACCATATTGTCGGTGTAG 58.429 40.000 0.00 0.00 42.39 2.74
4608 5332 6.600032 TGTAAACTTTGCAGAAGTCTAAACCA 59.400 34.615 12.60 4.68 0.00 3.67
4649 5373 4.340950 GCTTATCACTCTCCTGAGCTACTT 59.659 45.833 0.00 0.00 43.85 2.24
4656 5380 2.672098 GAGGGCTTATCACTCTCCTGA 58.328 52.381 0.00 0.00 0.00 3.86
4659 5383 1.414550 GTGGAGGGCTTATCACTCTCC 59.585 57.143 2.61 2.61 43.06 3.71
4665 5389 0.621571 AGGCAGTGGAGGGCTTATCA 60.622 55.000 0.00 0.00 38.04 2.15
4728 5452 8.611051 ATGGAAGTACTTTGTCTCTTAGGTAT 57.389 34.615 10.02 0.00 0.00 2.73
4802 5526 9.300681 TGATGAAGACTGACCAAGATTTTATTT 57.699 29.630 0.00 0.00 0.00 1.40
4823 5551 3.005684 GCCAGTTTTTGTGGTCATGATGA 59.994 43.478 0.00 0.00 37.40 2.92
4842 5570 5.590259 GCCTTGTTATTCTATCTCAAAGCCA 59.410 40.000 0.00 0.00 0.00 4.75
4919 5647 1.067425 CATGACTGGTGGGCACAAATG 60.067 52.381 0.00 0.00 34.73 2.32
4924 5652 2.418368 TATTCATGACTGGTGGGCAC 57.582 50.000 0.00 0.00 34.73 5.01
5014 5789 7.652300 TTGTCACTTAGTGTGTATGAACATC 57.348 36.000 12.41 0.00 46.27 3.06
5070 5845 6.169557 ACAAAATGATATGCCGTAGTAGGA 57.830 37.500 0.00 0.00 0.00 2.94
5078 5853 5.901552 AGGGTAAAACAAAATGATATGCCG 58.098 37.500 0.00 0.00 0.00 5.69
5086 5861 9.331282 TCCAACAATTAAGGGTAAAACAAAATG 57.669 29.630 0.00 0.00 0.00 2.32
5125 5900 6.127083 TGTGAGTTAGTTCTCATGCCATCATA 60.127 38.462 0.00 0.00 44.59 2.15
5127 5902 4.020307 TGTGAGTTAGTTCTCATGCCATCA 60.020 41.667 0.00 0.00 44.59 3.07
5160 5935 2.233676 CCACATAGGCTACACACACTCA 59.766 50.000 0.00 0.00 0.00 3.41
5179 5954 3.023119 ACAAGAGTGACAATTGCAACCA 58.977 40.909 0.00 0.00 0.00 3.67
5206 5981 7.454225 AGGGAGTATTTACCAATCTTAGATGC 58.546 38.462 0.00 0.00 0.00 3.91
5225 6000 3.632420 ATATTAGGGAACGGAGGGAGT 57.368 47.619 0.00 0.00 0.00 3.85
5226 6001 5.185442 GTCTTATATTAGGGAACGGAGGGAG 59.815 48.000 0.00 0.00 0.00 4.30
5227 6002 5.082425 GTCTTATATTAGGGAACGGAGGGA 58.918 45.833 0.00 0.00 0.00 4.20
5228 6003 4.222366 GGTCTTATATTAGGGAACGGAGGG 59.778 50.000 0.00 0.00 0.00 4.30
5229 6004 5.085219 AGGTCTTATATTAGGGAACGGAGG 58.915 45.833 0.00 0.00 0.00 4.30
5230 6005 6.667558 AAGGTCTTATATTAGGGAACGGAG 57.332 41.667 0.00 0.00 0.00 4.63
5231 6006 6.612456 TGAAAGGTCTTATATTAGGGAACGGA 59.388 38.462 0.00 0.00 0.00 4.69
5232 6007 6.823497 TGAAAGGTCTTATATTAGGGAACGG 58.177 40.000 0.00 0.00 0.00 4.44
5233 6008 6.424207 GCTGAAAGGTCTTATATTAGGGAACG 59.576 42.308 0.00 0.00 0.00 3.95
5234 6009 7.510407 AGCTGAAAGGTCTTATATTAGGGAAC 58.490 38.462 0.00 0.00 44.61 3.62
5235 6010 7.691993 AGCTGAAAGGTCTTATATTAGGGAA 57.308 36.000 0.00 0.00 44.61 3.97
5236 6011 8.974292 ATAGCTGAAAGGTCTTATATTAGGGA 57.026 34.615 0.00 0.00 44.61 4.20
5249 6024 9.860898 GTCAATATTTTGAAATAGCTGAAAGGT 57.139 29.630 0.00 0.00 45.27 3.50
5292 6067 9.719355 ACACATTTTAGTATGTATGTTCACTCA 57.281 29.630 0.00 0.00 36.64 3.41
5294 6069 9.944376 AGACACATTTTAGTATGTATGTTCACT 57.056 29.630 0.00 0.00 36.64 3.41
5312 6087 9.684448 CTTGATTCGTATGTATCTAGACACATT 57.316 33.333 21.14 3.51 36.74 2.71
5313 6088 9.067986 TCTTGATTCGTATGTATCTAGACACAT 57.932 33.333 19.95 19.95 38.81 3.21
5314 6089 8.446599 TCTTGATTCGTATGTATCTAGACACA 57.553 34.615 6.26 6.26 32.13 3.72
5315 6090 9.731819 TTTCTTGATTCGTATGTATCTAGACAC 57.268 33.333 12.78 0.00 35.01 3.67
5320 6095 9.817809 AGCTTTTTCTTGATTCGTATGTATCTA 57.182 29.630 3.57 0.00 0.00 1.98
5321 6096 8.723942 AGCTTTTTCTTGATTCGTATGTATCT 57.276 30.769 3.57 0.00 0.00 1.98
5325 6100 9.612620 CTTTTAGCTTTTTCTTGATTCGTATGT 57.387 29.630 0.00 0.00 0.00 2.29
5326 6101 9.825972 TCTTTTAGCTTTTTCTTGATTCGTATG 57.174 29.630 0.00 0.00 0.00 2.39
5329 6104 8.787852 AGATCTTTTAGCTTTTTCTTGATTCGT 58.212 29.630 0.00 0.00 0.00 3.85
5330 6105 9.617975 AAGATCTTTTAGCTTTTTCTTGATTCG 57.382 29.630 0.88 0.00 26.00 3.34
5343 6118 9.930693 CGTTCCCTAATATAAGATCTTTTAGCT 57.069 33.333 14.36 4.69 0.00 3.32
5344 6119 9.152595 CCGTTCCCTAATATAAGATCTTTTAGC 57.847 37.037 14.36 2.80 0.00 3.09
5347 6122 8.935741 ACTCCGTTCCCTAATATAAGATCTTTT 58.064 33.333 14.36 8.54 0.00 2.27
5348 6123 8.368668 CACTCCGTTCCCTAATATAAGATCTTT 58.631 37.037 14.36 4.45 0.00 2.52
5349 6124 7.728981 TCACTCCGTTCCCTAATATAAGATCTT 59.271 37.037 13.56 13.56 0.00 2.40
5350 6125 7.239438 TCACTCCGTTCCCTAATATAAGATCT 58.761 38.462 0.00 0.00 0.00 2.75
5351 6126 7.177041 ACTCACTCCGTTCCCTAATATAAGATC 59.823 40.741 0.00 0.00 0.00 2.75
5352 6127 7.011382 ACTCACTCCGTTCCCTAATATAAGAT 58.989 38.462 0.00 0.00 0.00 2.40
5353 6128 6.371278 ACTCACTCCGTTCCCTAATATAAGA 58.629 40.000 0.00 0.00 0.00 2.10
5354 6129 6.651975 ACTCACTCCGTTCCCTAATATAAG 57.348 41.667 0.00 0.00 0.00 1.73
5355 6130 9.236006 GTATACTCACTCCGTTCCCTAATATAA 57.764 37.037 0.00 0.00 0.00 0.98
5356 6131 8.385491 TGTATACTCACTCCGTTCCCTAATATA 58.615 37.037 4.17 0.00 0.00 0.86
5357 6132 7.236529 TGTATACTCACTCCGTTCCCTAATAT 58.763 38.462 4.17 0.00 0.00 1.28
5358 6133 6.604171 TGTATACTCACTCCGTTCCCTAATA 58.396 40.000 4.17 0.00 0.00 0.98
5359 6134 5.452255 TGTATACTCACTCCGTTCCCTAAT 58.548 41.667 4.17 0.00 0.00 1.73
5360 6135 4.858850 TGTATACTCACTCCGTTCCCTAA 58.141 43.478 4.17 0.00 0.00 2.69
5361 6136 4.508551 TGTATACTCACTCCGTTCCCTA 57.491 45.455 4.17 0.00 0.00 3.53
5362 6137 3.377253 TGTATACTCACTCCGTTCCCT 57.623 47.619 4.17 0.00 0.00 4.20
5363 6138 4.667519 AATGTATACTCACTCCGTTCCC 57.332 45.455 4.17 0.00 0.00 3.97
5364 6139 5.657474 TCAAATGTATACTCACTCCGTTCC 58.343 41.667 4.17 0.00 0.00 3.62
5365 6140 6.472808 GTCTCAAATGTATACTCACTCCGTTC 59.527 42.308 4.17 0.00 0.00 3.95
5366 6141 6.071560 TGTCTCAAATGTATACTCACTCCGTT 60.072 38.462 4.17 0.00 0.00 4.44
5367 6142 5.417894 TGTCTCAAATGTATACTCACTCCGT 59.582 40.000 4.17 0.00 0.00 4.69
5368 6143 5.891451 TGTCTCAAATGTATACTCACTCCG 58.109 41.667 4.17 0.00 0.00 4.63
5369 6144 8.607459 CAATTGTCTCAAATGTATACTCACTCC 58.393 37.037 4.17 0.00 0.00 3.85
5370 6145 9.155975 ACAATTGTCTCAAATGTATACTCACTC 57.844 33.333 4.92 0.00 0.00 3.51
5725 6500 7.004086 AGAAACAGTCCAACCTATCAAATTCA 58.996 34.615 0.00 0.00 0.00 2.57
5803 6578 6.640499 GGATCTGTTGAATCTCAGATAAGACG 59.360 42.308 16.41 0.00 46.92 4.18
5815 6590 4.227864 AGGAACTGGGATCTGTTGAATC 57.772 45.455 0.00 0.00 37.18 2.52
5958 6733 8.681486 ATCCATCAACGAATCTCAAATATGAA 57.319 30.769 0.00 0.00 34.49 2.57
6032 6807 9.922305 GTTATCAAGTAAAGTGCATGTATCTTC 57.078 33.333 0.00 0.00 0.00 2.87
6187 6964 5.163561 GGGAGTCAAAAGTGTTTGTGATGAA 60.164 40.000 0.00 0.00 43.90 2.57
6197 6974 3.864789 ACATGAGGGAGTCAAAAGTGT 57.135 42.857 0.00 0.00 39.19 3.55
6225 7002 3.722147 TCAGCTGTGAAAAGTGAGAGAC 58.278 45.455 14.67 0.00 0.00 3.36
6280 7057 1.066002 GCAAGCGTCCATATTGCACAT 59.934 47.619 4.38 0.00 46.64 3.21
6312 7089 4.037565 CAGTGTGTGTCTACTGTACAGGAA 59.962 45.833 26.12 13.14 39.48 3.36
6360 7137 0.916086 ATAATCCTTGCGGTCCCACA 59.084 50.000 0.00 0.00 0.00 4.17
6368 7145 1.093972 TGTGTGGCATAATCCTTGCG 58.906 50.000 0.00 0.00 41.07 4.85
6405 7182 5.141182 GACACCAATCCTATCTCTACTCCA 58.859 45.833 0.00 0.00 0.00 3.86
6488 7265 7.360017 GGGCATCAAAACCGAAAAAGAAATTAG 60.360 37.037 0.00 0.00 0.00 1.73
6639 7466 2.706339 ATTGTCTGGGAGATCACTGC 57.294 50.000 0.00 0.00 0.00 4.40
6923 7752 6.363577 TGCTTACTGTTTTGAGTGAAAGAG 57.636 37.500 0.00 0.00 36.35 2.85
6942 7771 4.710324 CATGAATGGCCCATTAAATGCTT 58.290 39.130 9.43 0.00 33.90 3.91
7142 7971 4.515191 TGCCTGAAATACTGTCAAGTGTTC 59.485 41.667 0.00 0.00 36.80 3.18
7233 8062 4.268884 GCCACTATTGAATCGAGTCTCAAC 59.731 45.833 14.66 0.00 34.52 3.18
7246 8075 6.653020 AGTCTATTGTTCATGCCACTATTGA 58.347 36.000 0.00 0.00 0.00 2.57
7276 8105 8.372459 AGTGTTAAAGACAGTGATGGTATTGTA 58.628 33.333 0.00 0.00 40.41 2.41
7402 8231 5.488645 TGGAAAGTGTTTCGAAAGGTTAC 57.511 39.130 11.66 8.41 40.57 2.50
7411 8240 2.472488 GCTGCAAATGGAAAGTGTTTCG 59.528 45.455 0.00 0.00 40.57 3.46
7428 8257 2.833794 TGTATTCACGGATAAGGCTGC 58.166 47.619 0.00 0.00 0.00 5.25
7581 8410 3.620488 AGAAGCAACACAAGAGACCAAA 58.380 40.909 0.00 0.00 0.00 3.28
7816 8645 1.175983 TGGGTGCTTTTTACGGCAGG 61.176 55.000 0.00 0.00 39.22 4.85
8402 9233 3.002791 TGAGGCGAGATGTGAATCAAAC 58.997 45.455 0.00 0.00 0.00 2.93
8404 9235 3.548745 ATGAGGCGAGATGTGAATCAA 57.451 42.857 0.00 0.00 0.00 2.57
8452 9286 4.600012 ACATTAATCTTGCGTGTGCTAC 57.400 40.909 0.00 0.00 43.34 3.58
8467 9301 7.094975 CCGTGTAACCTCATTTCTGAACATTAA 60.095 37.037 0.00 0.00 0.00 1.40
8794 9628 6.442513 AGCCAGATAACAGAAAAATACTGC 57.557 37.500 0.00 0.00 38.74 4.40
8795 9629 6.313905 ACGAGCCAGATAACAGAAAAATACTG 59.686 38.462 0.00 0.00 40.68 2.74
8864 9700 6.442564 ACCCTACACACTCCACATAATCTAAA 59.557 38.462 0.00 0.00 0.00 1.85
8887 9724 2.489938 TGGGAACACTGCTTATCACC 57.510 50.000 0.00 0.00 33.40 4.02
8896 9733 6.279882 ACAAACAAATACATTGGGAACACTG 58.720 36.000 0.00 0.00 45.73 3.66
9001 9838 2.481276 CGCTCATTGGTCTCCGTATTGA 60.481 50.000 0.00 0.00 0.00 2.57
9022 9859 3.384668 ACTGCAGATGATATGCGTGTAC 58.615 45.455 23.35 0.00 46.87 2.90
9177 10014 2.108075 TGCTCCCTCTGTGATCCAAAAA 59.892 45.455 0.00 0.00 0.00 1.94
9182 10019 1.267574 TGGTGCTCCCTCTGTGATCC 61.268 60.000 1.59 0.00 0.00 3.36
9345 10188 4.518970 TCAAGGGAAAAGCTACACATCAAC 59.481 41.667 0.00 0.00 0.00 3.18
9350 10225 5.705441 CACTTATCAAGGGAAAAGCTACACA 59.295 40.000 0.00 0.00 32.08 3.72
9423 10298 5.606348 ACTGCAAAAGGGTGATTAAAACA 57.394 34.783 0.00 0.00 0.00 2.83
9434 10309 3.799281 TCTGACAAAACTGCAAAAGGG 57.201 42.857 0.00 0.00 0.00 3.95
9524 10399 2.804212 GCCAGTTTGCTGCAATTTGAGT 60.804 45.455 16.77 0.87 41.26 3.41
9536 10411 2.287547 TGATTTCAACGAGCCAGTTTGC 60.288 45.455 0.00 0.00 30.96 3.68
9549 10424 8.805175 TGATTCAAAGAAATAGCCTGATTTCAA 58.195 29.630 15.06 4.98 44.77 2.69
9565 10441 7.439157 AACGAGATTGACATTGATTCAAAGA 57.561 32.000 8.51 0.00 36.57 2.52
9569 10445 6.558771 ACAAACGAGATTGACATTGATTCA 57.441 33.333 0.00 0.00 34.38 2.57
9643 10519 5.497635 TTTACAAGACAACGGGTAAAACC 57.502 39.130 0.00 0.00 34.00 3.27
9749 10626 6.041069 ACAAAATGAGGAAAAATAACGACCCA 59.959 34.615 0.00 0.00 0.00 4.51
9751 10628 7.865889 AGAACAAAATGAGGAAAAATAACGACC 59.134 33.333 0.00 0.00 0.00 4.79
9845 10728 3.525537 CATTCTAGTCGTTGTCTGGCAT 58.474 45.455 0.00 0.00 0.00 4.40
9848 10731 3.193691 ACTCCATTCTAGTCGTTGTCTGG 59.806 47.826 0.00 0.00 0.00 3.86
9876 10759 9.483916 GCCTTAGGATTCTAGAAACTAAGATTC 57.516 37.037 34.36 25.70 40.48 2.52
9914 10797 5.934935 TGGAACTTTAATCGGTCAAAGAC 57.065 39.130 0.00 0.00 35.70 3.01
9915 10798 7.229707 TGAAATGGAACTTTAATCGGTCAAAGA 59.770 33.333 0.00 0.00 35.70 2.52
9916 10799 7.367285 TGAAATGGAACTTTAATCGGTCAAAG 58.633 34.615 0.00 0.00 37.69 2.77
9917 10800 7.229707 TCTGAAATGGAACTTTAATCGGTCAAA 59.770 33.333 0.00 0.00 0.00 2.69
9918 10801 6.712998 TCTGAAATGGAACTTTAATCGGTCAA 59.287 34.615 0.00 0.00 0.00 3.18
9919 10802 6.234920 TCTGAAATGGAACTTTAATCGGTCA 58.765 36.000 0.00 0.00 0.00 4.02
9920 10803 6.594159 TCTCTGAAATGGAACTTTAATCGGTC 59.406 38.462 0.00 0.00 0.00 4.79
9921 10804 6.472887 TCTCTGAAATGGAACTTTAATCGGT 58.527 36.000 0.00 0.00 0.00 4.69
9922 10805 6.818644 TCTCTCTGAAATGGAACTTTAATCGG 59.181 38.462 0.00 0.00 0.00 4.18
9923 10806 7.761704 TCTCTCTCTGAAATGGAACTTTAATCG 59.238 37.037 0.00 0.00 0.00 3.34
9924 10807 8.878769 GTCTCTCTCTGAAATGGAACTTTAATC 58.121 37.037 0.00 0.00 0.00 1.75
9925 10808 7.547370 CGTCTCTCTCTGAAATGGAACTTTAAT 59.453 37.037 0.00 0.00 0.00 1.40
9926 10809 6.868864 CGTCTCTCTCTGAAATGGAACTTTAA 59.131 38.462 0.00 0.00 0.00 1.52
9927 10810 6.390721 CGTCTCTCTCTGAAATGGAACTTTA 58.609 40.000 0.00 0.00 0.00 1.85
9928 10811 5.233988 CGTCTCTCTCTGAAATGGAACTTT 58.766 41.667 0.00 0.00 0.00 2.66
9929 10812 4.322349 CCGTCTCTCTCTGAAATGGAACTT 60.322 45.833 0.00 0.00 0.00 2.66
9930 10813 3.194542 CCGTCTCTCTCTGAAATGGAACT 59.805 47.826 0.00 0.00 0.00 3.01
9931 10814 3.193691 TCCGTCTCTCTCTGAAATGGAAC 59.806 47.826 0.00 0.00 0.00 3.62
9932 10815 3.431415 TCCGTCTCTCTCTGAAATGGAA 58.569 45.455 0.00 0.00 0.00 3.53
9933 10816 3.087370 TCCGTCTCTCTCTGAAATGGA 57.913 47.619 0.00 0.00 0.00 3.41
9934 10817 3.876274 TTCCGTCTCTCTCTGAAATGG 57.124 47.619 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.