Multiple sequence alignment - TraesCS7A01G175800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G175800 chr7A 100.000 3733 0 0 159 3891 128928226 128924494 0.000000e+00 6894.0
1 TraesCS7A01G175800 chr7A 100.000 73 0 0 1 73 128928384 128928312 6.780000e-28 135.0
2 TraesCS7A01G175800 chr7A 81.915 94 17 0 3777 3870 521785086 521784993 3.220000e-11 80.5
3 TraesCS7A01G175800 chr7B 93.481 1626 85 11 2253 3872 91239803 91238193 0.000000e+00 2396.0
4 TraesCS7A01G175800 chr7B 87.592 1499 110 31 280 1738 91241703 91240241 0.000000e+00 1668.0
5 TraesCS7A01G175800 chr7B 83.799 179 24 4 1506 1680 726015963 726015786 8.650000e-37 165.0
6 TraesCS7A01G175800 chr7D 92.224 1659 92 11 2253 3879 129804103 129802450 0.000000e+00 2314.0
7 TraesCS7A01G175800 chr7D 87.150 1214 115 22 2253 3445 129806824 129805631 0.000000e+00 1339.0
8 TraesCS7A01G175800 chr7D 88.047 686 73 5 919 1603 129805220 129804543 0.000000e+00 804.0
9 TraesCS7A01G175800 chr7D 85.505 683 55 19 197 861 129808229 129807573 0.000000e+00 673.0
10 TraesCS7A01G175800 chr7D 85.063 636 66 13 883 1502 129807506 129806884 4.270000e-174 621.0
11 TraesCS7A01G175800 chr7D 85.827 381 30 17 528 904 129805631 129805271 2.190000e-102 383.0
12 TraesCS7A01G175800 chr7D 91.713 181 13 2 2006 2185 480637883 480637704 2.320000e-62 250.0
13 TraesCS7A01G175800 chr7D 81.034 232 38 2 3641 3866 497967596 497967365 3.090000e-41 180.0
14 TraesCS7A01G175800 chr1D 82.081 346 40 8 1499 1824 228022364 228022707 3.830000e-70 276.0
15 TraesCS7A01G175800 chr1D 93.220 177 11 1 2016 2192 238940383 238940208 3.860000e-65 259.0
16 TraesCS7A01G175800 chr1D 86.034 179 18 7 1506 1679 487346089 487345913 6.640000e-43 185.0
17 TraesCS7A01G175800 chr1D 82.474 194 26 8 1493 1680 441095697 441095888 3.110000e-36 163.0
18 TraesCS7A01G175800 chr3B 94.578 166 8 1 2023 2188 628473543 628473379 4.990000e-64 255.0
19 TraesCS7A01G175800 chr3B 91.803 183 13 2 2005 2185 571752508 571752690 1.790000e-63 254.0
20 TraesCS7A01G175800 chr6D 93.567 171 10 1 2020 2190 60197990 60198159 1.790000e-63 254.0
21 TraesCS7A01G175800 chr3A 93.143 175 9 3 2017 2190 649812008 649811836 1.790000e-63 254.0
22 TraesCS7A01G175800 chr3A 90.860 186 15 2 2006 2190 211572771 211572955 8.350000e-62 248.0
23 TraesCS7A01G175800 chr3A 89.637 193 17 3 2002 2192 251260281 251260090 3.880000e-60 243.0
24 TraesCS7A01G175800 chr4D 89.175 194 18 3 2003 2193 11572561 11572368 5.020000e-59 239.0
25 TraesCS7A01G175800 chr4D 77.470 253 31 17 1543 1790 298879816 298880047 1.130000e-25 128.0
26 TraesCS7A01G175800 chr4A 81.328 241 42 2 3634 3871 420509346 420509586 3.970000e-45 193.0
27 TraesCS7A01G175800 chr5B 86.503 163 15 6 1506 1663 559188849 559188689 5.170000e-39 172.0
28 TraesCS7A01G175800 chr5B 86.420 162 16 6 1506 1663 705452294 705452135 5.170000e-39 172.0
29 TraesCS7A01G175800 chr2B 84.706 170 18 8 1500 1663 513261883 513262050 3.110000e-36 163.0
30 TraesCS7A01G175800 chr2B 79.227 207 26 14 1592 1788 7030989 7031188 1.130000e-25 128.0
31 TraesCS7A01G175800 chr2B 79.227 207 26 14 1592 1788 7125184 7125383 1.130000e-25 128.0
32 TraesCS7A01G175800 chr2B 78.744 207 27 14 1592 1788 7069680 7069879 5.280000e-24 122.0
33 TraesCS7A01G175800 chr2B 78.744 207 27 14 1592 1788 7111349 7111548 5.280000e-24 122.0
34 TraesCS7A01G175800 chr2B 78.261 207 28 14 1592 1788 454765209 454765010 2.460000e-22 117.0
35 TraesCS7A01G175800 chrUn 84.615 169 19 7 1500 1663 57108488 57108654 1.120000e-35 161.0
36 TraesCS7A01G175800 chrUn 79.227 207 26 14 1592 1788 421241259 421241458 1.130000e-25 128.0
37 TraesCS7A01G175800 chr4B 83.333 180 23 7 1506 1680 642265353 642265176 4.020000e-35 159.0
38 TraesCS7A01G175800 chr3D 77.974 227 45 4 3650 3872 151905256 151905031 1.890000e-28 137.0
39 TraesCS7A01G175800 chr6A 79.695 197 26 7 3667 3853 127186929 127187121 3.160000e-26 130.0
40 TraesCS7A01G175800 chr6A 82.677 127 17 5 1667 1793 134690382 134690261 1.480000e-19 108.0
41 TraesCS7A01G175800 chr5D 93.056 72 4 1 2 73 493426806 493426876 1.910000e-18 104.0
42 TraesCS7A01G175800 chr5D 90.141 71 7 0 3 73 378944777 378944847 4.140000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G175800 chr7A 128924494 128928384 3890 True 3514.500000 6894 100.000000 1 3891 2 chr7A.!!$R2 3890
1 TraesCS7A01G175800 chr7B 91238193 91241703 3510 True 2032.000000 2396 90.536500 280 3872 2 chr7B.!!$R2 3592
2 TraesCS7A01G175800 chr7D 129802450 129808229 5779 True 1022.333333 2314 87.302667 197 3879 6 chr7D.!!$R3 3682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
197 198 0.109342 CCCCATAGTGAGGTCATGGC 59.891 60.0 0.00 0.00 38.32 4.40 F
766 3038 0.163788 CCAAACGCAGTAGCAACGAG 59.836 55.0 0.00 0.00 45.00 4.18 F
1701 4048 0.108019 AGTTCGCCGGAGAAAAACCT 59.892 50.0 22.82 12.28 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1577 3900 0.108089 GCGAGTTTCTTCCTCCCCTC 60.108 60.0 0.0 0.00 0.00 4.30 R
2464 4912 0.251077 CTTGAAGCCCAACTGGAGCT 60.251 55.0 0.0 1.69 41.39 4.09 R
3290 5762 1.004595 GCGGGCTTCTTTACTTACCG 58.995 55.0 0.0 0.00 42.47 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.256180 CCACCGCCCTGGCTATCC 62.256 72.222 6.60 0.00 43.94 2.59
41 42 4.256180 CACCGCCCTGGCTATCCC 62.256 72.222 6.60 0.00 43.94 3.85
42 43 4.499116 ACCGCCCTGGCTATCCCT 62.499 66.667 6.60 0.00 43.94 4.20
43 44 3.631046 CCGCCCTGGCTATCCCTC 61.631 72.222 6.60 0.00 39.32 4.30
44 45 2.525381 CGCCCTGGCTATCCCTCT 60.525 66.667 6.60 0.00 39.32 3.69
45 46 1.228894 CGCCCTGGCTATCCCTCTA 60.229 63.158 6.60 0.00 39.32 2.43
46 47 0.832135 CGCCCTGGCTATCCCTCTAA 60.832 60.000 6.60 0.00 39.32 2.10
47 48 0.980423 GCCCTGGCTATCCCTCTAAG 59.020 60.000 0.00 0.00 38.26 2.18
48 49 0.980423 CCCTGGCTATCCCTCTAAGC 59.020 60.000 0.00 0.00 35.47 3.09
52 53 3.165657 GCTATCCCTCTAAGCCCCA 57.834 57.895 0.00 0.00 0.00 4.96
53 54 0.687920 GCTATCCCTCTAAGCCCCAC 59.312 60.000 0.00 0.00 0.00 4.61
54 55 2.040144 GCTATCCCTCTAAGCCCCACA 61.040 57.143 0.00 0.00 0.00 4.17
55 56 1.694696 CTATCCCTCTAAGCCCCACAC 59.305 57.143 0.00 0.00 0.00 3.82
56 57 0.988678 ATCCCTCTAAGCCCCACACC 60.989 60.000 0.00 0.00 0.00 4.16
57 58 1.923395 CCCTCTAAGCCCCACACCA 60.923 63.158 0.00 0.00 0.00 4.17
58 59 1.299976 CCTCTAAGCCCCACACCAC 59.700 63.158 0.00 0.00 0.00 4.16
59 60 1.299976 CTCTAAGCCCCACACCACC 59.700 63.158 0.00 0.00 0.00 4.61
60 61 2.046314 CTAAGCCCCACACCACCG 60.046 66.667 0.00 0.00 0.00 4.94
61 62 3.622060 CTAAGCCCCACACCACCGG 62.622 68.421 0.00 0.00 0.00 5.28
71 72 4.892002 ACCACCGGTGAAAACCTC 57.108 55.556 36.07 0.00 32.98 3.85
72 73 1.149854 ACCACCGGTGAAAACCTCC 59.850 57.895 36.07 0.00 32.98 4.30
181 182 5.685728 AGATAATAGAGTTGCAACTTCCCC 58.314 41.667 31.58 19.14 39.88 4.81
182 183 3.806949 AATAGAGTTGCAACTTCCCCA 57.193 42.857 31.58 15.80 39.88 4.96
183 184 4.322057 AATAGAGTTGCAACTTCCCCAT 57.678 40.909 31.58 17.17 39.88 4.00
184 185 5.450818 AATAGAGTTGCAACTTCCCCATA 57.549 39.130 31.58 17.40 39.88 2.74
185 186 3.356529 AGAGTTGCAACTTCCCCATAG 57.643 47.619 31.58 0.00 39.88 2.23
186 187 2.644798 AGAGTTGCAACTTCCCCATAGT 59.355 45.455 31.58 6.95 39.88 2.12
187 188 2.749621 GAGTTGCAACTTCCCCATAGTG 59.250 50.000 31.58 0.00 39.88 2.74
188 189 2.375174 AGTTGCAACTTCCCCATAGTGA 59.625 45.455 26.36 0.00 35.21 3.41
189 190 2.749621 GTTGCAACTTCCCCATAGTGAG 59.250 50.000 22.36 0.00 0.00 3.51
190 191 1.281867 TGCAACTTCCCCATAGTGAGG 59.718 52.381 0.00 0.00 0.00 3.86
191 192 1.282157 GCAACTTCCCCATAGTGAGGT 59.718 52.381 0.00 0.00 0.00 3.85
192 193 2.681097 GCAACTTCCCCATAGTGAGGTC 60.681 54.545 0.00 0.00 0.00 3.85
193 194 2.571653 CAACTTCCCCATAGTGAGGTCA 59.428 50.000 0.00 0.00 0.00 4.02
194 195 3.136641 ACTTCCCCATAGTGAGGTCAT 57.863 47.619 0.00 0.00 0.00 3.06
195 196 2.774234 ACTTCCCCATAGTGAGGTCATG 59.226 50.000 0.00 0.00 0.00 3.07
196 197 1.806496 TCCCCATAGTGAGGTCATGG 58.194 55.000 0.00 0.00 39.19 3.66
197 198 0.109342 CCCCATAGTGAGGTCATGGC 59.891 60.000 0.00 0.00 38.32 4.40
198 199 1.135094 CCCATAGTGAGGTCATGGCT 58.865 55.000 0.00 0.00 38.32 4.75
199 200 1.492176 CCCATAGTGAGGTCATGGCTT 59.508 52.381 0.00 0.00 38.32 4.35
200 201 2.486191 CCCATAGTGAGGTCATGGCTTC 60.486 54.545 1.83 1.83 38.32 3.86
209 210 1.564348 GGTCATGGCTTCCCCTAAGAA 59.436 52.381 0.00 0.00 37.38 2.52
218 219 4.445019 GGCTTCCCCTAAGAAAGATAGTGG 60.445 50.000 0.00 0.00 37.38 4.00
223 224 4.385310 CCCCTAAGAAAGATAGTGGGGTTG 60.385 50.000 6.05 0.00 45.71 3.77
224 225 4.200092 CCTAAGAAAGATAGTGGGGTTGC 58.800 47.826 0.00 0.00 0.00 4.17
238 240 1.154197 GGTTGCTCTTACCCGACAAC 58.846 55.000 0.00 0.00 39.84 3.32
261 263 2.185004 TTTTCTTCTCCGGCAAGAGG 57.815 50.000 13.53 5.97 34.46 3.69
263 265 0.608640 TTCTTCTCCGGCAAGAGGTC 59.391 55.000 13.53 0.00 34.46 3.85
264 266 1.219393 CTTCTCCGGCAAGAGGTCC 59.781 63.158 0.00 0.00 34.46 4.46
265 267 1.535444 TTCTCCGGCAAGAGGTCCA 60.535 57.895 0.00 0.00 34.46 4.02
267 269 3.672295 CTCCGGCAAGAGGTCCAGC 62.672 68.421 0.00 0.00 0.00 4.85
268 270 4.020617 CCGGCAAGAGGTCCAGCA 62.021 66.667 0.00 0.00 0.00 4.41
269 271 2.270205 CGGCAAGAGGTCCAGCAT 59.730 61.111 0.00 0.00 0.00 3.79
270 272 2.110967 CGGCAAGAGGTCCAGCATG 61.111 63.158 0.00 0.00 0.00 4.06
271 273 1.300963 GGCAAGAGGTCCAGCATGA 59.699 57.895 0.00 0.00 39.69 3.07
272 274 0.322816 GGCAAGAGGTCCAGCATGAA 60.323 55.000 0.00 0.00 39.69 2.57
273 275 1.093159 GCAAGAGGTCCAGCATGAAG 58.907 55.000 0.00 0.00 39.69 3.02
274 276 1.339438 GCAAGAGGTCCAGCATGAAGA 60.339 52.381 0.00 0.00 39.69 2.87
296 298 1.981495 AGGAAGGAAGAAGGTGACTGG 59.019 52.381 0.00 0.00 42.68 4.00
336 338 5.475564 TCAGGTACCTGGAAAATAGCAAAAC 59.524 40.000 35.94 0.00 43.75 2.43
414 416 1.107538 AGCCATCACATGAGCATGCC 61.108 55.000 15.66 6.65 42.39 4.40
580 592 4.782019 TTGCATAAGTAAGCCCAAACAG 57.218 40.909 0.00 0.00 0.00 3.16
592 604 3.197983 AGCCCAAACAGATACAGTAGGAC 59.802 47.826 0.00 0.00 0.00 3.85
706 2978 2.987149 CAGTAGTAGAAACGCACAGGTG 59.013 50.000 0.00 0.00 0.00 4.00
732 3004 6.081693 ACATAAATAAACCGCGACAAAAGTC 58.918 36.000 8.23 0.00 0.00 3.01
744 3016 0.451783 CAAAAGTCGGCATGGCTACC 59.548 55.000 18.71 6.01 0.00 3.18
760 3032 0.248289 TACCCTCCAAACGCAGTAGC 59.752 55.000 0.00 0.00 45.00 3.58
765 3037 0.249531 TCCAAACGCAGTAGCAACGA 60.250 50.000 0.00 0.00 45.00 3.85
766 3038 0.163788 CCAAACGCAGTAGCAACGAG 59.836 55.000 0.00 0.00 45.00 4.18
825 3098 6.509677 CGTCAGTTTAAGAACACTCCAAAGAC 60.510 42.308 0.00 0.00 38.26 3.01
839 3112 5.104900 ACTCCAAAGACAGTAGAAACACACT 60.105 40.000 0.00 0.00 0.00 3.55
844 3117 7.399523 CAAAGACAGTAGAAACACACTTACAC 58.600 38.462 0.00 0.00 0.00 2.90
847 3120 5.726397 ACAGTAGAAACACACTTACACACA 58.274 37.500 0.00 0.00 0.00 3.72
849 3122 5.810587 CAGTAGAAACACACTTACACACACT 59.189 40.000 0.00 0.00 0.00 3.55
850 3123 5.810587 AGTAGAAACACACTTACACACACTG 59.189 40.000 0.00 0.00 0.00 3.66
852 3125 4.630069 AGAAACACACTTACACACACTGAC 59.370 41.667 0.00 0.00 0.00 3.51
856 3129 3.062099 CACACTTACACACACTGACACAC 59.938 47.826 0.00 0.00 0.00 3.82
858 3131 3.062099 CACTTACACACACTGACACACAC 59.938 47.826 0.00 0.00 0.00 3.82
859 3132 3.258228 CTTACACACACTGACACACACA 58.742 45.455 0.00 0.00 0.00 3.72
862 3135 1.128507 CACACACTGACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
863 3136 1.270571 ACACACTGACACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
865 3138 1.270571 ACACTGACACACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
866 3139 1.128507 CACTGACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
867 3140 1.270571 ACTGACACACACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
868 3141 1.128507 CTGACACACACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
869 3142 1.152510 GACACACACACACACACACA 58.847 50.000 0.00 0.00 0.00 3.72
870 3143 1.737236 GACACACACACACACACACAT 59.263 47.619 0.00 0.00 0.00 3.21
871 3144 2.933260 GACACACACACACACACACATA 59.067 45.455 0.00 0.00 0.00 2.29
887 3160 9.783256 ACACACACATAAAACTCTTCTAAAAAC 57.217 29.630 0.00 0.00 0.00 2.43
901 3213 6.750039 TCTTCTAAAAACAAGAAAGGCAAACG 59.250 34.615 0.00 0.00 32.77 3.60
904 3216 7.091443 TCTAAAAACAAGAAAGGCAAACGAAA 58.909 30.769 0.00 0.00 0.00 3.46
913 3225 2.767505 AGGCAAACGAAACAGTAGGAG 58.232 47.619 0.00 0.00 0.00 3.69
917 3229 0.669625 AACGAAACAGTAGGAGCGCC 60.670 55.000 2.29 0.00 0.00 6.53
981 3293 2.375766 GCAGACACTCGAACTGCGG 61.376 63.158 14.35 0.00 45.25 5.69
1182 3494 3.805307 AGGACGCTCTCACGCTCG 61.805 66.667 0.00 0.00 36.19 5.03
1187 3499 3.800863 GCTCTCACGCTCGTCGGA 61.801 66.667 0.00 0.00 43.86 4.55
1236 3548 5.520376 AACCTGAGGATTCTTTTGTTGTG 57.480 39.130 4.99 0.00 0.00 3.33
1250 3562 0.995728 GTTGTGGCGGTGTGTTTTTG 59.004 50.000 0.00 0.00 0.00 2.44
1258 3570 0.530431 GGTGTGTTTTTGCAGGGCTG 60.530 55.000 0.00 0.00 0.00 4.85
1291 3603 1.691689 GGAGGTGGGGGTTACGGAT 60.692 63.158 0.00 0.00 0.00 4.18
1350 3662 4.388499 GGTGGCGGTGGACATCGT 62.388 66.667 6.84 0.00 37.24 3.73
1450 3762 2.684001 TGTGGCTATGTTTAGACGGG 57.316 50.000 0.00 0.00 36.10 5.28
1478 3790 1.541588 GGAGTTGTTGTGGATCTTGGC 59.458 52.381 0.00 0.00 0.00 4.52
1488 3800 1.066430 TGGATCTTGGCGTGGAGTTAC 60.066 52.381 0.00 0.00 0.00 2.50
1504 3816 7.117812 CGTGGAGTTACACAGAAAGAAATACAT 59.882 37.037 0.00 0.00 41.38 2.29
1524 3847 9.698309 AATACATAATAGCTACATGTCAGTCAC 57.302 33.333 20.58 0.00 34.78 3.67
1525 3848 6.516718 ACATAATAGCTACATGTCAGTCACC 58.483 40.000 14.29 0.00 0.00 4.02
1526 3849 6.325028 ACATAATAGCTACATGTCAGTCACCT 59.675 38.462 14.29 0.00 0.00 4.00
1527 3850 4.662468 ATAGCTACATGTCAGTCACCTG 57.338 45.455 0.00 0.00 40.25 4.00
1528 3851 2.529632 AGCTACATGTCAGTCACCTGA 58.470 47.619 0.00 0.00 45.44 3.86
1544 3867 4.100808 TCACCTGAACTTTTGAATTTGGGG 59.899 41.667 0.00 0.00 0.00 4.96
1574 3897 1.204941 TCGCTAGAAGGGAGAAACAGC 59.795 52.381 0.00 0.00 31.82 4.40
1575 3898 1.740718 CGCTAGAAGGGAGAAACAGCC 60.741 57.143 0.00 0.00 0.00 4.85
1576 3899 1.740718 GCTAGAAGGGAGAAACAGCCG 60.741 57.143 0.00 0.00 0.00 5.52
1577 3900 0.902531 TAGAAGGGAGAAACAGCCGG 59.097 55.000 0.00 0.00 0.00 6.13
1578 3901 0.836400 AGAAGGGAGAAACAGCCGGA 60.836 55.000 5.05 0.00 0.00 5.14
1579 3902 0.391793 GAAGGGAGAAACAGCCGGAG 60.392 60.000 5.05 0.00 0.00 4.63
1593 3916 2.685202 CGGAGGGGAGGAAGAAACT 58.315 57.895 0.00 0.00 0.00 2.66
1594 3917 0.537653 CGGAGGGGAGGAAGAAACTC 59.462 60.000 0.00 0.00 0.00 3.01
1595 3918 0.537653 GGAGGGGAGGAAGAAACTCG 59.462 60.000 0.00 0.00 35.82 4.18
1634 3957 4.803908 GCTGGCAGGCTACCCCAC 62.804 72.222 17.64 0.00 35.39 4.61
1650 3973 2.907042 CCCCACCATCTATCTTAGGGTC 59.093 54.545 0.00 0.00 32.90 4.46
1664 3987 4.817909 GGTCGGGGTGGGGGAGAT 62.818 72.222 0.00 0.00 0.00 2.75
1665 3988 3.480133 GTCGGGGTGGGGGAGATG 61.480 72.222 0.00 0.00 0.00 2.90
1701 4048 0.108019 AGTTCGCCGGAGAAAAACCT 59.892 50.000 22.82 12.28 0.00 3.50
1707 4054 2.706890 GCCGGAGAAAAACCTGTCATA 58.293 47.619 5.05 0.00 0.00 2.15
1713 4060 2.304761 AGAAAAACCTGTCATAGCCCGA 59.695 45.455 0.00 0.00 0.00 5.14
1728 4075 1.153989 CCGAGGCTAGAGGGATGGA 59.846 63.158 0.00 0.00 0.00 3.41
1770 4117 4.679003 TGGGGGCGGTTTAGGGGA 62.679 66.667 0.00 0.00 0.00 4.81
1771 4118 4.119363 GGGGGCGGTTTAGGGGAC 62.119 72.222 0.00 0.00 0.00 4.46
1843 4190 2.954684 AACATGCGGCGGAGGAAGA 61.955 57.895 21.87 0.00 0.00 2.87
1851 4198 0.321996 GGCGGAGGAAGAAGAACACT 59.678 55.000 0.00 0.00 0.00 3.55
1872 4320 4.253685 CTGGCGATCTGTTTTTAGGAAGA 58.746 43.478 0.00 0.00 0.00 2.87
1884 4332 6.482308 TGTTTTTAGGAAGAAGGAAGAAGACG 59.518 38.462 0.00 0.00 0.00 4.18
1889 4337 5.968254 AGGAAGAAGGAAGAAGACGTAATC 58.032 41.667 0.00 0.00 0.00 1.75
1899 4347 7.177041 AGGAAGAAGACGTAATCTAGACTGTTT 59.823 37.037 0.00 0.00 36.27 2.83
1931 4379 3.616956 AACGCTTGAGATTGATCCTGA 57.383 42.857 0.00 0.00 0.00 3.86
1939 4387 6.127814 GCTTGAGATTGATCCTGACAAAATCA 60.128 38.462 0.00 0.00 35.45 2.57
1945 4393 5.947228 TGATCCTGACAAAATCAACTGTC 57.053 39.130 0.00 0.00 41.93 3.51
1946 4394 5.624159 TGATCCTGACAAAATCAACTGTCT 58.376 37.500 4.07 0.00 42.06 3.41
1951 4399 6.038603 TCCTGACAAAATCAACTGTCTCAAAG 59.961 38.462 4.07 0.00 42.06 2.77
1953 4401 5.067674 TGACAAAATCAACTGTCTCAAAGGG 59.932 40.000 4.07 0.00 42.06 3.95
1956 4404 6.154363 ACAAAATCAACTGTCTCAAAGGGAAA 59.846 34.615 0.00 0.00 0.00 3.13
1960 4408 6.790232 TCAACTGTCTCAAAGGGAAATTTT 57.210 33.333 0.00 0.00 0.00 1.82
1968 4416 5.704053 TCTCAAAGGGAAATTTTAGTCGACC 59.296 40.000 13.01 0.00 0.00 4.79
1976 4424 0.971386 TTTTAGTCGACCGGCTCCTT 59.029 50.000 13.01 0.00 0.00 3.36
1978 4426 1.601419 TTAGTCGACCGGCTCCTTGG 61.601 60.000 13.01 0.00 0.00 3.61
2046 4494 9.942526 ATTCCCTCCATTTCTAAATATTTGTCT 57.057 29.630 11.05 0.00 0.00 3.41
2047 4495 9.768215 TTCCCTCCATTTCTAAATATTTGTCTT 57.232 29.630 11.05 0.00 0.00 3.01
2048 4496 9.768215 TCCCTCCATTTCTAAATATTTGTCTTT 57.232 29.630 11.05 0.00 0.00 2.52
2077 4525 9.737427 AGAGATTTCAATAAGTGAGTACATACG 57.263 33.333 0.00 0.00 37.61 3.06
2078 4526 8.873215 AGATTTCAATAAGTGAGTACATACGG 57.127 34.615 0.00 0.00 37.61 4.02
2079 4527 8.692710 AGATTTCAATAAGTGAGTACATACGGA 58.307 33.333 0.00 0.00 37.61 4.69
2080 4528 8.873215 ATTTCAATAAGTGAGTACATACGGAG 57.127 34.615 0.00 0.00 37.61 4.63
2081 4529 5.828747 TCAATAAGTGAGTACATACGGAGC 58.171 41.667 0.00 0.00 0.00 4.70
2082 4530 5.358725 TCAATAAGTGAGTACATACGGAGCA 59.641 40.000 0.00 0.00 0.00 4.26
2083 4531 5.847111 ATAAGTGAGTACATACGGAGCAA 57.153 39.130 0.00 0.00 0.00 3.91
2084 4532 4.530710 AAGTGAGTACATACGGAGCAAA 57.469 40.909 0.00 0.00 0.00 3.68
2085 4533 4.530710 AGTGAGTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
2086 4534 5.086104 AGTGAGTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
2087 4535 4.870426 AGTGAGTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
2088 4536 4.868171 GTGAGTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
2089 4537 5.350365 GTGAGTACATACGGAGCAAAATGAA 59.650 40.000 0.00 0.00 0.00 2.57
2090 4538 6.037172 GTGAGTACATACGGAGCAAAATGAAT 59.963 38.462 0.00 0.00 0.00 2.57
2091 4539 6.037062 TGAGTACATACGGAGCAAAATGAATG 59.963 38.462 0.00 0.00 0.00 2.67
2092 4540 6.112734 AGTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
2093 4541 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
2094 4542 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
2095 4543 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
2096 4544 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
2097 4545 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
2098 4546 6.124088 ACGGAGCAAAATGAATGAATCTAC 57.876 37.500 0.00 0.00 0.00 2.59
2099 4547 5.647658 ACGGAGCAAAATGAATGAATCTACA 59.352 36.000 0.00 0.00 0.00 2.74
2100 4548 5.967674 CGGAGCAAAATGAATGAATCTACAC 59.032 40.000 0.00 0.00 0.00 2.90
2101 4549 6.268566 GGAGCAAAATGAATGAATCTACACC 58.731 40.000 0.00 0.00 0.00 4.16
2102 4550 6.096001 GGAGCAAAATGAATGAATCTACACCT 59.904 38.462 0.00 0.00 0.00 4.00
2103 4551 7.363268 GGAGCAAAATGAATGAATCTACACCTT 60.363 37.037 0.00 0.00 0.00 3.50
2104 4552 8.579850 AGCAAAATGAATGAATCTACACCTTA 57.420 30.769 0.00 0.00 0.00 2.69
2105 4553 9.023962 AGCAAAATGAATGAATCTACACCTTAA 57.976 29.630 0.00 0.00 0.00 1.85
2106 4554 9.638239 GCAAAATGAATGAATCTACACCTTAAA 57.362 29.630 0.00 0.00 0.00 1.52
2136 4584 9.990868 TGTCTATATACATCCATATGTGGTAGT 57.009 33.333 8.51 10.44 45.99 2.73
2138 4586 9.642343 TCTATATACATCCATATGTGGTAGTCC 57.358 37.037 8.51 0.00 45.99 3.85
2139 4587 9.421399 CTATATACATCCATATGTGGTAGTCCA 57.579 37.037 8.51 1.36 45.99 4.02
2140 4588 8.860517 ATATACATCCATATGTGGTAGTCCAT 57.139 34.615 8.51 3.29 45.99 3.41
2141 4589 5.912149 ACATCCATATGTGGTAGTCCATT 57.088 39.130 8.51 0.00 44.79 3.16
2142 4590 6.266131 ACATCCATATGTGGTAGTCCATTT 57.734 37.500 8.51 0.00 44.79 2.32
2143 4591 6.064060 ACATCCATATGTGGTAGTCCATTTG 58.936 40.000 8.51 0.00 44.79 2.32
2144 4592 5.966853 TCCATATGTGGTAGTCCATTTGA 57.033 39.130 8.51 0.00 46.20 2.69
2145 4593 6.320434 TCCATATGTGGTAGTCCATTTGAA 57.680 37.500 8.51 0.00 46.20 2.69
2146 4594 6.726379 TCCATATGTGGTAGTCCATTTGAAA 58.274 36.000 8.51 0.00 46.20 2.69
2147 4595 7.353525 TCCATATGTGGTAGTCCATTTGAAAT 58.646 34.615 8.51 0.00 46.20 2.17
2148 4596 7.502226 TCCATATGTGGTAGTCCATTTGAAATC 59.498 37.037 8.51 0.00 46.20 2.17
2149 4597 7.503566 CCATATGTGGTAGTCCATTTGAAATCT 59.496 37.037 0.00 0.00 46.20 2.40
2150 4598 8.562892 CATATGTGGTAGTCCATTTGAAATCTC 58.437 37.037 0.00 0.00 46.20 2.75
2151 4599 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2152 4600 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2153 4601 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2154 4602 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2155 4603 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2156 4604 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2159 4607 7.606349 AGTCCATTTGAAATCTCTAAAAAGGC 58.394 34.615 0.00 0.00 0.00 4.35
2160 4608 7.233348 AGTCCATTTGAAATCTCTAAAAAGGCA 59.767 33.333 0.00 0.00 0.00 4.75
2161 4609 7.872483 GTCCATTTGAAATCTCTAAAAAGGCAA 59.128 33.333 0.00 0.00 0.00 4.52
2162 4610 8.428063 TCCATTTGAAATCTCTAAAAAGGCAAA 58.572 29.630 0.00 0.00 0.00 3.68
2163 4611 9.223099 CCATTTGAAATCTCTAAAAAGGCAAAT 57.777 29.630 0.00 0.00 34.78 2.32
2174 4622 9.503427 CTCTAAAAAGGCAAATATTTAGGAACG 57.497 33.333 0.00 0.00 36.48 3.95
2175 4623 8.463607 TCTAAAAAGGCAAATATTTAGGAACGG 58.536 33.333 0.00 0.00 36.48 4.44
2176 4624 6.844097 AAAAGGCAAATATTTAGGAACGGA 57.156 33.333 0.00 0.00 0.00 4.69
2177 4625 7.418337 AAAAGGCAAATATTTAGGAACGGAT 57.582 32.000 0.00 0.00 0.00 4.18
2178 4626 6.391227 AAGGCAAATATTTAGGAACGGATG 57.609 37.500 0.00 0.00 0.00 3.51
2179 4627 4.827284 AGGCAAATATTTAGGAACGGATGG 59.173 41.667 0.00 0.00 0.00 3.51
2180 4628 4.825085 GGCAAATATTTAGGAACGGATGGA 59.175 41.667 0.00 0.00 0.00 3.41
2181 4629 5.048713 GGCAAATATTTAGGAACGGATGGAG 60.049 44.000 0.00 0.00 0.00 3.86
2223 4671 5.483685 TGAGCTAGTAAGGTTGTGAACAT 57.516 39.130 0.00 0.00 32.30 2.71
2224 4672 5.237815 TGAGCTAGTAAGGTTGTGAACATG 58.762 41.667 0.00 0.00 32.30 3.21
2225 4673 5.221641 TGAGCTAGTAAGGTTGTGAACATGT 60.222 40.000 0.00 0.00 32.30 3.21
2226 4674 5.621193 AGCTAGTAAGGTTGTGAACATGTT 58.379 37.500 11.78 11.78 0.00 2.71
2227 4675 6.062095 AGCTAGTAAGGTTGTGAACATGTTT 58.938 36.000 13.36 0.00 0.00 2.83
2228 4676 7.221450 AGCTAGTAAGGTTGTGAACATGTTTA 58.779 34.615 13.36 5.62 0.00 2.01
2229 4677 7.387948 AGCTAGTAAGGTTGTGAACATGTTTAG 59.612 37.037 13.36 6.82 0.00 1.85
2230 4678 7.386848 GCTAGTAAGGTTGTGAACATGTTTAGA 59.613 37.037 13.36 4.06 0.00 2.10
2231 4679 9.268268 CTAGTAAGGTTGTGAACATGTTTAGAA 57.732 33.333 13.36 10.71 0.00 2.10
2232 4680 8.154649 AGTAAGGTTGTGAACATGTTTAGAAG 57.845 34.615 13.36 0.00 0.00 2.85
2233 4681 6.391227 AAGGTTGTGAACATGTTTAGAAGG 57.609 37.500 13.36 0.00 0.00 3.46
2234 4682 5.690865 AGGTTGTGAACATGTTTAGAAGGA 58.309 37.500 13.36 0.00 0.00 3.36
2235 4683 6.306987 AGGTTGTGAACATGTTTAGAAGGAT 58.693 36.000 13.36 0.00 0.00 3.24
2236 4684 6.207417 AGGTTGTGAACATGTTTAGAAGGATG 59.793 38.462 13.36 0.00 0.00 3.51
2237 4685 6.206634 GGTTGTGAACATGTTTAGAAGGATGA 59.793 38.462 13.36 0.00 0.00 2.92
2238 4686 7.301054 GTTGTGAACATGTTTAGAAGGATGAG 58.699 38.462 13.36 0.00 0.00 2.90
2239 4687 5.412594 TGTGAACATGTTTAGAAGGATGAGC 59.587 40.000 13.36 0.00 0.00 4.26
2240 4688 5.645497 GTGAACATGTTTAGAAGGATGAGCT 59.355 40.000 13.36 0.00 0.00 4.09
2241 4689 5.877012 TGAACATGTTTAGAAGGATGAGCTC 59.123 40.000 13.36 6.82 0.00 4.09
2242 4690 4.437239 ACATGTTTAGAAGGATGAGCTCG 58.563 43.478 9.64 0.00 0.00 5.03
2243 4691 2.893637 TGTTTAGAAGGATGAGCTCGC 58.106 47.619 9.64 3.37 0.00 5.03
2244 4692 2.233676 TGTTTAGAAGGATGAGCTCGCA 59.766 45.455 9.64 0.00 0.00 5.10
2245 4693 3.262420 GTTTAGAAGGATGAGCTCGCAA 58.738 45.455 9.64 0.00 0.00 4.85
2246 4694 3.610040 TTAGAAGGATGAGCTCGCAAA 57.390 42.857 9.64 0.00 0.00 3.68
2247 4695 2.479566 AGAAGGATGAGCTCGCAAAA 57.520 45.000 9.64 0.00 0.00 2.44
2248 4696 2.783135 AGAAGGATGAGCTCGCAAAAA 58.217 42.857 9.64 0.00 0.00 1.94
2313 4761 6.223120 CAAGGCAATAAAACAGCTTAACCTT 58.777 36.000 0.00 0.00 34.20 3.50
2322 4770 6.570672 AAACAGCTTAACCTTACTAAAGCC 57.429 37.500 2.50 0.00 44.24 4.35
2324 4772 5.489249 ACAGCTTAACCTTACTAAAGCCTC 58.511 41.667 2.50 0.00 44.24 4.70
2329 4777 9.210228 AGCTTAACCTTACTAAAGCCTCTATAA 57.790 33.333 2.50 0.00 44.24 0.98
2480 4928 1.270826 GAAAAGCTCCAGTTGGGCTTC 59.729 52.381 19.99 10.42 44.91 3.86
2599 5047 5.300539 TGGTCAGTAGTCATTAGATCTCTGC 59.699 44.000 0.00 0.00 0.00 4.26
2626 5097 8.125978 TGAATGTAAAATTCTTTCTGCCATCT 57.874 30.769 0.30 0.00 0.00 2.90
2640 5111 9.823647 CTTTCTGCCATCTTAGATCTTTAACTA 57.176 33.333 0.00 0.00 0.00 2.24
2793 5264 5.221641 TGTGCACTCTACTATGTTCAACCTT 60.222 40.000 19.41 0.00 0.00 3.50
2912 5383 2.166829 GTGTTCACATATGGTTGGGCA 58.833 47.619 7.80 0.00 0.00 5.36
2970 5441 9.434559 GAGAAATACTAAGTTGTGTGTTTCAAC 57.565 33.333 22.16 16.09 42.59 3.18
3001 5472 7.223971 TGTTACTGAGTTTGTGATGTAGTGTTC 59.776 37.037 0.00 0.00 0.00 3.18
3014 5485 8.065407 GTGATGTAGTGTTCGTTATGTTTGAAA 58.935 33.333 0.00 0.00 0.00 2.69
3022 5493 6.743627 TGTTCGTTATGTTTGAAATATTCGGC 59.256 34.615 10.07 6.42 0.00 5.54
3114 5585 3.619900 ATGTAGGACATGGAGGCTAGA 57.380 47.619 0.00 0.00 37.45 2.43
3194 5666 6.787458 AGGTTGGTATGATATGGTGTCTATGA 59.213 38.462 0.00 0.00 0.00 2.15
3290 5762 7.462590 AGGAATTAGGCCTAAGGATGTAAATC 58.537 38.462 28.35 14.43 32.92 2.17
3298 5770 6.239402 GGCCTAAGGATGTAAATCGGTAAGTA 60.239 42.308 0.00 0.00 0.00 2.24
3323 5795 5.246307 AGAAGCCCGCATATAACTAAATCC 58.754 41.667 0.00 0.00 0.00 3.01
3329 5801 7.834181 AGCCCGCATATAACTAAATCCAAATAT 59.166 33.333 0.00 0.00 0.00 1.28
3368 5840 9.757227 TTTTATCTTGATGACACCGAAATTTTT 57.243 25.926 0.00 0.00 0.00 1.94
3378 5850 5.310451 ACACCGAAATTTTTGCTAGTCCTA 58.690 37.500 0.00 0.00 0.00 2.94
3419 5891 1.153289 GTGCCACATCCTCGATGCT 60.153 57.895 1.54 0.00 43.15 3.79
3428 5900 1.758936 TCCTCGATGCTTTAGTCGGA 58.241 50.000 0.00 0.00 38.34 4.55
3449 5921 5.176592 GGAGCGACTAACCTTAGAACAAAT 58.823 41.667 0.00 0.00 34.84 2.32
3492 5964 3.306225 CCCCTTTTGTCATGACCACATTG 60.306 47.826 22.85 7.78 34.15 2.82
3497 5969 3.507162 TGTCATGACCACATTGACCTT 57.493 42.857 22.85 0.00 35.64 3.50
3520 5992 7.759433 CCTTGTTGACACACTATTTGTTTTTCT 59.241 33.333 0.00 0.00 35.67 2.52
3541 6013 1.492599 AGCTAGATTGGCTTCCTTCCC 59.507 52.381 0.00 0.00 36.56 3.97
3551 6023 2.031870 GCTTCCTTCCCGGCAAATATT 58.968 47.619 0.00 0.00 0.00 1.28
3565 6037 3.774766 GCAAATATTTTGGTCTCCCCCTT 59.225 43.478 0.00 0.00 0.00 3.95
3572 6044 2.291043 GGTCTCCCCCTTCGCTTCA 61.291 63.158 0.00 0.00 0.00 3.02
3611 6084 1.737793 CTTACAACCAACCGCTCATCC 59.262 52.381 0.00 0.00 0.00 3.51
3647 6120 8.719645 AGCCTGATTACTTCTATGAACTAGAT 57.280 34.615 0.00 0.00 36.35 1.98
3664 6137 8.318412 TGAACTAGATAATACCACACATGTTGT 58.682 33.333 0.00 0.00 39.97 3.32
3671 6144 1.003118 ACCACACATGTTGTAGCGGAT 59.997 47.619 0.00 0.00 35.67 4.18
3682 6155 8.506437 ACATGTTGTAGCGGATTTGAATATATG 58.494 33.333 0.00 0.00 0.00 1.78
3687 6160 8.458573 TGTAGCGGATTTGAATATATGGTTTT 57.541 30.769 0.00 0.00 0.00 2.43
3747 6221 9.503427 CGATTTAAACTATGTGAAAGATTTCCC 57.497 33.333 3.00 0.00 36.36 3.97
3781 6258 6.774354 AAAGTAGCATGAAAAATTGTGCAG 57.226 33.333 0.00 0.00 39.94 4.41
3839 6316 6.486657 ACTTAGAATGCACTAACACACATTGT 59.513 34.615 0.00 0.00 41.74 2.71
3854 6331 5.760253 CACACATTGTATGGTAGAGGATTCC 59.240 44.000 0.00 0.00 33.60 3.01
3871 6348 5.011125 AGGATTCCCATGTGTAGATTAGACG 59.989 44.000 0.00 0.00 33.88 4.18
3872 6349 3.728076 TCCCATGTGTAGATTAGACGC 57.272 47.619 0.00 0.00 0.00 5.19
3876 6353 3.798878 CCATGTGTAGATTAGACGCACAG 59.201 47.826 0.00 0.00 42.26 3.66
3878 6355 3.833442 TGTGTAGATTAGACGCACAGTG 58.167 45.455 0.00 0.00 35.48 3.66
3879 6356 3.504520 TGTGTAGATTAGACGCACAGTGA 59.495 43.478 4.15 0.00 35.48 3.41
3880 6357 4.022676 TGTGTAGATTAGACGCACAGTGAA 60.023 41.667 4.15 0.00 35.48 3.18
3881 6358 4.921515 GTGTAGATTAGACGCACAGTGAAA 59.078 41.667 4.15 0.00 0.00 2.69
3882 6359 5.061064 GTGTAGATTAGACGCACAGTGAAAG 59.939 44.000 4.15 0.00 0.00 2.62
3883 6360 2.996621 AGATTAGACGCACAGTGAAAGC 59.003 45.455 4.15 0.00 0.00 3.51
3884 6361 2.232756 TTAGACGCACAGTGAAAGCA 57.767 45.000 4.15 0.00 0.00 3.91
3885 6362 1.497991 TAGACGCACAGTGAAAGCAC 58.502 50.000 4.15 0.00 45.49 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.980423 CTTAGAGGGATAGCCAGGGC 59.020 60.000 0.97 0.97 42.33 5.19
29 30 0.980423 GCTTAGAGGGATAGCCAGGG 59.020 60.000 0.00 0.00 35.15 4.45
34 35 0.687920 GTGGGGCTTAGAGGGATAGC 59.312 60.000 0.00 0.00 0.00 2.97
35 36 1.694696 GTGTGGGGCTTAGAGGGATAG 59.305 57.143 0.00 0.00 0.00 2.08
36 37 1.694693 GGTGTGGGGCTTAGAGGGATA 60.695 57.143 0.00 0.00 0.00 2.59
37 38 0.988678 GGTGTGGGGCTTAGAGGGAT 60.989 60.000 0.00 0.00 0.00 3.85
38 39 1.615424 GGTGTGGGGCTTAGAGGGA 60.615 63.158 0.00 0.00 0.00 4.20
39 40 1.923395 TGGTGTGGGGCTTAGAGGG 60.923 63.158 0.00 0.00 0.00 4.30
40 41 1.299976 GTGGTGTGGGGCTTAGAGG 59.700 63.158 0.00 0.00 0.00 3.69
41 42 1.299976 GGTGGTGTGGGGCTTAGAG 59.700 63.158 0.00 0.00 0.00 2.43
42 43 2.589157 CGGTGGTGTGGGGCTTAGA 61.589 63.158 0.00 0.00 0.00 2.10
43 44 2.046314 CGGTGGTGTGGGGCTTAG 60.046 66.667 0.00 0.00 0.00 2.18
44 45 3.642503 CCGGTGGTGTGGGGCTTA 61.643 66.667 0.00 0.00 0.00 3.09
158 159 5.191722 TGGGGAAGTTGCAACTCTATTATCT 59.808 40.000 31.20 13.99 38.57 1.98
159 160 5.437060 TGGGGAAGTTGCAACTCTATTATC 58.563 41.667 31.20 22.37 38.57 1.75
160 161 5.450818 TGGGGAAGTTGCAACTCTATTAT 57.549 39.130 31.20 15.52 38.57 1.28
161 162 4.919774 TGGGGAAGTTGCAACTCTATTA 57.080 40.909 31.20 15.61 38.57 0.98
162 163 3.806949 TGGGGAAGTTGCAACTCTATT 57.193 42.857 31.20 16.68 38.57 1.73
163 164 4.475016 ACTATGGGGAAGTTGCAACTCTAT 59.525 41.667 31.20 22.57 38.57 1.98
164 165 3.844211 ACTATGGGGAAGTTGCAACTCTA 59.156 43.478 31.20 17.63 38.57 2.43
165 166 2.644798 ACTATGGGGAAGTTGCAACTCT 59.355 45.455 31.20 20.68 38.57 3.24
166 167 2.749621 CACTATGGGGAAGTTGCAACTC 59.250 50.000 31.20 22.51 38.57 3.01
167 168 2.375174 TCACTATGGGGAAGTTGCAACT 59.625 45.455 26.36 26.36 42.04 3.16
168 169 2.749621 CTCACTATGGGGAAGTTGCAAC 59.250 50.000 22.17 22.17 0.00 4.17
169 170 2.290896 CCTCACTATGGGGAAGTTGCAA 60.291 50.000 0.00 0.00 41.85 4.08
170 171 1.281867 CCTCACTATGGGGAAGTTGCA 59.718 52.381 0.00 0.00 41.85 4.08
171 172 1.282157 ACCTCACTATGGGGAAGTTGC 59.718 52.381 0.58 0.00 41.85 4.17
172 173 2.571653 TGACCTCACTATGGGGAAGTTG 59.428 50.000 0.58 0.00 41.85 3.16
173 174 2.915869 TGACCTCACTATGGGGAAGTT 58.084 47.619 0.58 0.00 41.85 2.66
174 175 2.642171 TGACCTCACTATGGGGAAGT 57.358 50.000 0.58 0.00 41.85 3.01
175 176 2.105477 CCATGACCTCACTATGGGGAAG 59.895 54.545 0.58 0.00 41.85 3.46
176 177 2.126882 CCATGACCTCACTATGGGGAA 58.873 52.381 0.58 0.00 41.85 3.97
177 178 1.806496 CCATGACCTCACTATGGGGA 58.194 55.000 0.58 0.00 41.85 4.81
178 179 0.109342 GCCATGACCTCACTATGGGG 59.891 60.000 0.00 0.00 45.84 4.96
179 180 1.135094 AGCCATGACCTCACTATGGG 58.865 55.000 0.00 0.00 41.28 4.00
180 181 2.486191 GGAAGCCATGACCTCACTATGG 60.486 54.545 0.00 0.00 43.31 2.74
181 182 2.486191 GGGAAGCCATGACCTCACTATG 60.486 54.545 0.00 0.00 0.00 2.23
182 183 1.771255 GGGAAGCCATGACCTCACTAT 59.229 52.381 0.00 0.00 0.00 2.12
183 184 1.204146 GGGAAGCCATGACCTCACTA 58.796 55.000 0.00 0.00 0.00 2.74
184 185 1.566298 GGGGAAGCCATGACCTCACT 61.566 60.000 0.00 0.00 0.00 3.41
185 186 1.077429 GGGGAAGCCATGACCTCAC 60.077 63.158 0.00 0.00 0.00 3.51
186 187 0.044092 TAGGGGAAGCCATGACCTCA 59.956 55.000 0.00 0.00 32.87 3.86
187 188 1.141858 CTTAGGGGAAGCCATGACCTC 59.858 57.143 0.00 0.00 32.87 3.85
188 189 1.216990 CTTAGGGGAAGCCATGACCT 58.783 55.000 0.00 0.00 35.37 3.85
189 190 1.213296 TCTTAGGGGAAGCCATGACC 58.787 55.000 0.00 0.00 34.87 4.02
190 191 3.054361 TCTTTCTTAGGGGAAGCCATGAC 60.054 47.826 0.00 0.00 34.87 3.06
191 192 3.189606 TCTTTCTTAGGGGAAGCCATGA 58.810 45.455 0.00 0.00 34.87 3.07
192 193 3.652057 TCTTTCTTAGGGGAAGCCATG 57.348 47.619 0.00 0.00 34.87 3.66
193 194 4.978388 ACTATCTTTCTTAGGGGAAGCCAT 59.022 41.667 0.00 0.00 34.87 4.40
194 195 4.164221 CACTATCTTTCTTAGGGGAAGCCA 59.836 45.833 0.00 0.00 34.87 4.75
195 196 4.445019 CCACTATCTTTCTTAGGGGAAGCC 60.445 50.000 0.00 0.00 41.97 4.35
196 197 4.445019 CCCACTATCTTTCTTAGGGGAAGC 60.445 50.000 0.51 0.00 41.97 3.86
197 198 5.297569 CCCACTATCTTTCTTAGGGGAAG 57.702 47.826 0.51 0.00 41.97 3.46
209 210 3.200165 GGTAAGAGCAACCCCACTATCTT 59.800 47.826 0.00 0.00 0.00 2.40
223 224 4.499037 AAAAATGTTGTCGGGTAAGAGC 57.501 40.909 0.00 0.00 0.00 4.09
253 255 0.322816 TTCATGCTGGACCTCTTGCC 60.323 55.000 0.00 0.00 0.00 4.52
256 258 3.560882 CCTTTCTTCATGCTGGACCTCTT 60.561 47.826 0.00 0.00 0.00 2.85
257 259 2.026449 CCTTTCTTCATGCTGGACCTCT 60.026 50.000 0.00 0.00 0.00 3.69
259 261 1.988107 TCCTTTCTTCATGCTGGACCT 59.012 47.619 0.00 0.00 0.00 3.85
260 262 2.496899 TCCTTTCTTCATGCTGGACC 57.503 50.000 0.00 0.00 0.00 4.46
261 263 2.751806 CCTTCCTTTCTTCATGCTGGAC 59.248 50.000 0.00 0.00 0.00 4.02
263 265 3.077484 TCCTTCCTTTCTTCATGCTGG 57.923 47.619 0.00 0.00 0.00 4.85
264 266 4.330250 TCTTCCTTCCTTTCTTCATGCTG 58.670 43.478 0.00 0.00 0.00 4.41
265 267 4.647564 TCTTCCTTCCTTTCTTCATGCT 57.352 40.909 0.00 0.00 0.00 3.79
267 269 5.182760 CACCTTCTTCCTTCCTTTCTTCATG 59.817 44.000 0.00 0.00 0.00 3.07
268 270 5.073691 TCACCTTCTTCCTTCCTTTCTTCAT 59.926 40.000 0.00 0.00 0.00 2.57
269 271 4.412199 TCACCTTCTTCCTTCCTTTCTTCA 59.588 41.667 0.00 0.00 0.00 3.02
270 272 4.757657 GTCACCTTCTTCCTTCCTTTCTTC 59.242 45.833 0.00 0.00 0.00 2.87
271 273 4.413851 AGTCACCTTCTTCCTTCCTTTCTT 59.586 41.667 0.00 0.00 0.00 2.52
272 274 3.977326 AGTCACCTTCTTCCTTCCTTTCT 59.023 43.478 0.00 0.00 0.00 2.52
273 275 4.068599 CAGTCACCTTCTTCCTTCCTTTC 58.931 47.826 0.00 0.00 0.00 2.62
274 276 3.181439 CCAGTCACCTTCTTCCTTCCTTT 60.181 47.826 0.00 0.00 0.00 3.11
310 312 5.450818 TGCTATTTTCCAGGTACCTGAAT 57.549 39.130 38.35 29.89 46.30 2.57
319 321 7.877612 ACTTTTATGGTTTTGCTATTTTCCAGG 59.122 33.333 0.00 0.00 0.00 4.45
336 338 7.982354 TCCAAACAAACACCTAAACTTTTATGG 59.018 33.333 0.00 0.00 0.00 2.74
387 389 3.743584 GCTCATGTGATGGCTATGACACT 60.744 47.826 4.16 0.00 33.22 3.55
414 416 5.842907 TGGAATGTATCTCAACCGTCTATG 58.157 41.667 0.00 0.00 32.33 2.23
580 592 1.885233 GGCCTACGGTCCTACTGTATC 59.115 57.143 0.00 0.00 39.07 2.24
598 610 0.234884 GTGTTTGTCACAGCTACGGC 59.765 55.000 0.00 0.00 45.51 5.68
706 2978 7.017055 ACTTTTGTCGCGGTTTATTTATGTAC 58.983 34.615 6.13 0.00 0.00 2.90
732 3004 2.550699 TTTGGAGGGTAGCCATGCCG 62.551 60.000 14.62 0.00 34.90 5.69
744 3016 0.517316 GTTGCTACTGCGTTTGGAGG 59.483 55.000 0.00 0.00 43.34 4.30
760 3032 1.129251 CTTATGTGTGCCTGCTCGTTG 59.871 52.381 0.00 0.00 0.00 4.10
765 3037 0.037303 ACAGCTTATGTGTGCCTGCT 59.963 50.000 0.00 0.00 41.91 4.24
766 3038 0.449388 GACAGCTTATGTGTGCCTGC 59.551 55.000 0.00 0.00 44.17 4.85
825 3098 5.810587 AGTGTGTGTAAGTGTGTTTCTACTG 59.189 40.000 0.00 0.00 0.00 2.74
839 3112 2.997303 GTGTGTGTGTCAGTGTGTGTAA 59.003 45.455 0.00 0.00 0.00 2.41
844 3117 1.128507 GTGTGTGTGTGTGTCAGTGTG 59.871 52.381 0.00 0.00 0.00 3.82
847 3120 1.270571 TGTGTGTGTGTGTGTGTCAGT 60.271 47.619 0.00 0.00 0.00 3.41
849 3122 1.152510 GTGTGTGTGTGTGTGTGTCA 58.847 50.000 0.00 0.00 0.00 3.58
850 3123 1.152510 TGTGTGTGTGTGTGTGTGTC 58.847 50.000 0.00 0.00 0.00 3.67
852 3125 4.348198 TTTATGTGTGTGTGTGTGTGTG 57.652 40.909 0.00 0.00 0.00 3.82
856 3129 5.484173 AGAGTTTTATGTGTGTGTGTGTG 57.516 39.130 0.00 0.00 0.00 3.82
858 3131 6.363577 AGAAGAGTTTTATGTGTGTGTGTG 57.636 37.500 0.00 0.00 0.00 3.82
859 3132 8.500753 TTTAGAAGAGTTTTATGTGTGTGTGT 57.499 30.769 0.00 0.00 0.00 3.72
862 3135 9.781834 TGTTTTTAGAAGAGTTTTATGTGTGTG 57.218 29.630 0.00 0.00 0.00 3.82
870 3143 9.797556 GCCTTTCTTGTTTTTAGAAGAGTTTTA 57.202 29.630 0.00 0.00 33.49 1.52
871 3144 8.311109 TGCCTTTCTTGTTTTTAGAAGAGTTTT 58.689 29.630 0.00 0.00 33.49 2.43
887 3160 3.769536 ACTGTTTCGTTTGCCTTTCTTG 58.230 40.909 0.00 0.00 0.00 3.02
890 3202 3.562557 TCCTACTGTTTCGTTTGCCTTTC 59.437 43.478 0.00 0.00 0.00 2.62
895 3207 1.136336 CGCTCCTACTGTTTCGTTTGC 60.136 52.381 0.00 0.00 0.00 3.68
901 3213 1.810030 CCGGCGCTCCTACTGTTTC 60.810 63.158 7.64 0.00 0.00 2.78
904 3216 3.760035 CACCGGCGCTCCTACTGT 61.760 66.667 7.64 0.00 0.00 3.55
913 3225 2.728922 GCTCTATATATACACCGGCGC 58.271 52.381 0.00 0.00 0.00 6.53
917 3229 2.853662 GCGGCGCTCTATATATACACCG 60.854 54.545 26.86 0.00 40.97 4.94
981 3293 2.127232 GCGTCAGCTTTGTTCCGC 60.127 61.111 0.00 0.00 41.01 5.54
1166 3478 4.104417 ACGAGCGTGAGAGCGTCC 62.104 66.667 0.00 0.00 43.00 4.79
1207 3519 4.495690 AAGAATCCTCAGGTTAGGCTTC 57.504 45.455 0.00 0.00 40.54 3.86
1236 3548 1.591327 CCTGCAAAAACACACCGCC 60.591 57.895 0.00 0.00 0.00 6.13
1291 3603 2.186160 CGCGGCCATCCTTATTGCA 61.186 57.895 2.24 0.00 0.00 4.08
1331 3643 2.436646 GATGTCCACCGCCACCAG 60.437 66.667 0.00 0.00 0.00 4.00
1350 3662 3.680786 CAGCCACCTCGTCACCGA 61.681 66.667 0.00 0.00 41.73 4.69
1370 3682 0.398318 AGCAGGGAAGTCACCTTGTC 59.602 55.000 0.00 0.00 38.90 3.18
1383 3695 1.447317 AAGTCACGTGCAAAGCAGGG 61.447 55.000 11.67 3.04 46.80 4.45
1454 3766 0.676782 GATCCACAACAACTCCCCCG 60.677 60.000 0.00 0.00 0.00 5.73
1478 3790 5.924475 ATTTCTTTCTGTGTAACTCCACG 57.076 39.130 0.00 0.00 38.20 4.94
1523 3846 3.181455 GCCCCAAATTCAAAAGTTCAGGT 60.181 43.478 0.00 0.00 0.00 4.00
1524 3847 3.181456 TGCCCCAAATTCAAAAGTTCAGG 60.181 43.478 0.00 0.00 0.00 3.86
1525 3848 4.060205 CTGCCCCAAATTCAAAAGTTCAG 58.940 43.478 0.00 0.00 0.00 3.02
1526 3849 3.454082 ACTGCCCCAAATTCAAAAGTTCA 59.546 39.130 0.00 0.00 0.00 3.18
1527 3850 4.058124 GACTGCCCCAAATTCAAAAGTTC 58.942 43.478 0.00 0.00 0.00 3.01
1528 3851 3.492482 CGACTGCCCCAAATTCAAAAGTT 60.492 43.478 0.00 0.00 0.00 2.66
1529 3852 2.035832 CGACTGCCCCAAATTCAAAAGT 59.964 45.455 0.00 0.00 0.00 2.66
1544 3867 1.855360 CCTTCTAGCGAAATCGACTGC 59.145 52.381 7.06 0.00 43.02 4.40
1574 3897 0.910088 AGTTTCTTCCTCCCCTCCGG 60.910 60.000 0.00 0.00 0.00 5.14
1575 3898 0.537653 GAGTTTCTTCCTCCCCTCCG 59.462 60.000 0.00 0.00 0.00 4.63
1576 3899 0.537653 CGAGTTTCTTCCTCCCCTCC 59.462 60.000 0.00 0.00 0.00 4.30
1577 3900 0.108089 GCGAGTTTCTTCCTCCCCTC 60.108 60.000 0.00 0.00 0.00 4.30
1578 3901 1.554583 GGCGAGTTTCTTCCTCCCCT 61.555 60.000 0.00 0.00 0.00 4.79
1579 3902 1.078356 GGCGAGTTTCTTCCTCCCC 60.078 63.158 0.00 0.00 0.00 4.81
1580 3903 1.448013 CGGCGAGTTTCTTCCTCCC 60.448 63.158 0.00 0.00 0.00 4.30
1581 3904 1.448013 CCGGCGAGTTTCTTCCTCC 60.448 63.158 9.30 0.00 0.00 4.30
1582 3905 0.458716 CTCCGGCGAGTTTCTTCCTC 60.459 60.000 9.30 0.00 0.00 3.71
1583 3906 1.592223 CTCCGGCGAGTTTCTTCCT 59.408 57.895 9.30 0.00 0.00 3.36
1584 3907 1.448013 CCTCCGGCGAGTTTCTTCC 60.448 63.158 9.30 0.00 33.93 3.46
1585 3908 0.458716 CTCCTCCGGCGAGTTTCTTC 60.459 60.000 9.30 0.00 33.93 2.87
1586 3909 0.898789 TCTCCTCCGGCGAGTTTCTT 60.899 55.000 9.30 0.00 33.93 2.52
1587 3910 1.304217 TCTCCTCCGGCGAGTTTCT 60.304 57.895 9.30 0.00 33.93 2.52
1588 3911 1.139947 CTCTCCTCCGGCGAGTTTC 59.860 63.158 9.30 0.00 33.93 2.78
1589 3912 2.352032 CCTCTCCTCCGGCGAGTTT 61.352 63.158 9.30 0.00 33.93 2.66
1590 3913 2.756283 CCTCTCCTCCGGCGAGTT 60.756 66.667 9.30 0.00 33.93 3.01
1591 3914 3.283812 TTCCTCTCCTCCGGCGAGT 62.284 63.158 9.30 0.00 33.93 4.18
1592 3915 2.440430 TTCCTCTCCTCCGGCGAG 60.440 66.667 9.30 11.14 35.72 5.03
1593 3916 2.440430 CTTCCTCTCCTCCGGCGA 60.440 66.667 9.30 0.00 0.00 5.54
1594 3917 2.010582 CTTCTTCCTCTCCTCCGGCG 62.011 65.000 0.00 0.00 0.00 6.46
1595 3918 1.819905 CTTCTTCCTCTCCTCCGGC 59.180 63.158 0.00 0.00 0.00 6.13
1603 3926 1.896694 CCAGCGAGCTTCTTCCTCT 59.103 57.895 0.00 0.00 0.00 3.69
1634 3957 2.180276 CCCCGACCCTAAGATAGATGG 58.820 57.143 0.00 0.00 0.00 3.51
1713 4060 1.152440 CCGTCCATCCCTCTAGCCT 60.152 63.158 0.00 0.00 0.00 4.58
1751 4098 4.435970 CCCTAAACCGCCCCCACC 62.436 72.222 0.00 0.00 0.00 4.61
1760 4107 3.709633 ACCGCCGTCCCCTAAACC 61.710 66.667 0.00 0.00 0.00 3.27
1824 4171 2.745884 TTCCTCCGCCGCATGTTG 60.746 61.111 0.00 0.00 0.00 3.33
1843 4190 2.550830 AACAGATCGCCAGTGTTCTT 57.449 45.000 0.00 0.00 27.96 2.52
1851 4198 4.280436 TCTTCCTAAAAACAGATCGCCA 57.720 40.909 0.00 0.00 0.00 5.69
1872 4320 6.660094 ACAGTCTAGATTACGTCTTCTTCCTT 59.340 38.462 5.60 0.00 38.42 3.36
1906 4354 6.265422 TCAGGATCAATCTCAAGCGTTAGATA 59.735 38.462 0.00 0.00 32.17 1.98
1931 4379 5.200483 TCCCTTTGAGACAGTTGATTTTGT 58.800 37.500 0.00 0.00 0.00 2.83
1939 4387 7.255139 CGACTAAAATTTCCCTTTGAGACAGTT 60.255 37.037 0.00 0.00 0.00 3.16
1945 4393 5.390567 CGGTCGACTAAAATTTCCCTTTGAG 60.391 44.000 16.46 0.00 0.00 3.02
1946 4394 4.453136 CGGTCGACTAAAATTTCCCTTTGA 59.547 41.667 16.46 0.00 0.00 2.69
1951 4399 1.399440 GCCGGTCGACTAAAATTTCCC 59.601 52.381 16.46 0.00 0.00 3.97
1953 4401 2.350804 GGAGCCGGTCGACTAAAATTTC 59.649 50.000 16.46 4.71 0.00 2.17
1956 4404 1.192428 AGGAGCCGGTCGACTAAAAT 58.808 50.000 16.46 0.00 0.00 1.82
1960 4408 2.050350 CCAAGGAGCCGGTCGACTA 61.050 63.158 16.46 0.00 0.00 2.59
1968 4416 2.830370 GGGAATGCCAAGGAGCCG 60.830 66.667 0.00 0.00 35.15 5.52
2051 4499 9.737427 CGTATGTACTCACTTATTGAAATCTCT 57.263 33.333 0.00 0.00 32.21 3.10
2052 4500 8.969267 CCGTATGTACTCACTTATTGAAATCTC 58.031 37.037 0.00 0.00 32.21 2.75
2053 4501 8.692710 TCCGTATGTACTCACTTATTGAAATCT 58.307 33.333 0.00 0.00 32.21 2.40
2054 4502 8.867112 TCCGTATGTACTCACTTATTGAAATC 57.133 34.615 0.00 0.00 32.21 2.17
2055 4503 7.438459 GCTCCGTATGTACTCACTTATTGAAAT 59.562 37.037 0.00 0.00 32.21 2.17
2056 4504 6.755141 GCTCCGTATGTACTCACTTATTGAAA 59.245 38.462 0.00 0.00 32.21 2.69
2057 4505 6.127563 TGCTCCGTATGTACTCACTTATTGAA 60.128 38.462 0.00 0.00 32.21 2.69
2058 4506 5.358725 TGCTCCGTATGTACTCACTTATTGA 59.641 40.000 0.00 0.00 0.00 2.57
2059 4507 5.588240 TGCTCCGTATGTACTCACTTATTG 58.412 41.667 0.00 0.00 0.00 1.90
2060 4508 5.847111 TGCTCCGTATGTACTCACTTATT 57.153 39.130 0.00 0.00 0.00 1.40
2061 4509 5.847111 TTGCTCCGTATGTACTCACTTAT 57.153 39.130 0.00 0.00 0.00 1.73
2062 4510 5.648178 TTTGCTCCGTATGTACTCACTTA 57.352 39.130 0.00 0.00 0.00 2.24
2063 4511 4.530710 TTTGCTCCGTATGTACTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
2064 4512 4.530710 TTTTGCTCCGTATGTACTCACT 57.469 40.909 0.00 0.00 0.00 3.41
2065 4513 4.868171 TCATTTTGCTCCGTATGTACTCAC 59.132 41.667 0.00 0.00 0.00 3.51
2066 4514 5.079689 TCATTTTGCTCCGTATGTACTCA 57.920 39.130 0.00 0.00 0.00 3.41
2067 4515 6.257849 TCATTCATTTTGCTCCGTATGTACTC 59.742 38.462 0.00 0.00 0.00 2.59
2068 4516 6.112734 TCATTCATTTTGCTCCGTATGTACT 58.887 36.000 0.00 0.00 0.00 2.73
2069 4517 6.358118 TCATTCATTTTGCTCCGTATGTAC 57.642 37.500 0.00 0.00 0.00 2.90
2070 4518 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
2071 4519 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
2072 4520 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
2073 4521 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
2074 4522 6.821160 TGTAGATTCATTCATTTTGCTCCGTA 59.179 34.615 0.00 0.00 0.00 4.02
2075 4523 5.647658 TGTAGATTCATTCATTTTGCTCCGT 59.352 36.000 0.00 0.00 0.00 4.69
2076 4524 5.967674 GTGTAGATTCATTCATTTTGCTCCG 59.032 40.000 0.00 0.00 0.00 4.63
2077 4525 6.096001 AGGTGTAGATTCATTCATTTTGCTCC 59.904 38.462 0.00 0.00 0.00 4.70
2078 4526 7.093322 AGGTGTAGATTCATTCATTTTGCTC 57.907 36.000 0.00 0.00 0.00 4.26
2079 4527 7.472334 AAGGTGTAGATTCATTCATTTTGCT 57.528 32.000 0.00 0.00 0.00 3.91
2080 4528 9.638239 TTTAAGGTGTAGATTCATTCATTTTGC 57.362 29.630 0.00 0.00 0.00 3.68
2133 4581 8.739972 GCCTTTTTAGAGATTTCAAATGGACTA 58.260 33.333 0.00 0.00 0.00 2.59
2134 4582 7.233348 TGCCTTTTTAGAGATTTCAAATGGACT 59.767 33.333 0.00 0.00 0.00 3.85
2135 4583 7.378181 TGCCTTTTTAGAGATTTCAAATGGAC 58.622 34.615 0.00 0.55 0.00 4.02
2136 4584 7.537596 TGCCTTTTTAGAGATTTCAAATGGA 57.462 32.000 0.00 0.00 0.00 3.41
2137 4585 8.606040 TTTGCCTTTTTAGAGATTTCAAATGG 57.394 30.769 0.00 0.00 0.00 3.16
2148 4596 9.503427 CGTTCCTAAATATTTGCCTTTTTAGAG 57.497 33.333 11.05 0.00 34.90 2.43
2149 4597 8.463607 CCGTTCCTAAATATTTGCCTTTTTAGA 58.536 33.333 11.05 0.00 34.90 2.10
2150 4598 8.463607 TCCGTTCCTAAATATTTGCCTTTTTAG 58.536 33.333 11.05 0.00 33.47 1.85
2151 4599 8.350852 TCCGTTCCTAAATATTTGCCTTTTTA 57.649 30.769 11.05 0.00 0.00 1.52
2152 4600 7.234661 TCCGTTCCTAAATATTTGCCTTTTT 57.765 32.000 11.05 0.00 0.00 1.94
2153 4601 6.844097 TCCGTTCCTAAATATTTGCCTTTT 57.156 33.333 11.05 0.00 0.00 2.27
2154 4602 6.183360 CCATCCGTTCCTAAATATTTGCCTTT 60.183 38.462 11.05 0.00 0.00 3.11
2155 4603 5.301805 CCATCCGTTCCTAAATATTTGCCTT 59.698 40.000 11.05 0.00 0.00 4.35
2156 4604 4.827284 CCATCCGTTCCTAAATATTTGCCT 59.173 41.667 11.05 0.00 0.00 4.75
2157 4605 4.825085 TCCATCCGTTCCTAAATATTTGCC 59.175 41.667 11.05 0.00 0.00 4.52
2158 4606 5.531287 ACTCCATCCGTTCCTAAATATTTGC 59.469 40.000 11.05 0.00 0.00 3.68
2159 4607 8.848474 ATACTCCATCCGTTCCTAAATATTTG 57.152 34.615 11.05 1.40 0.00 2.32
2166 4614 9.986157 AGTATATAATACTCCATCCGTTCCTAA 57.014 33.333 0.00 0.00 0.00 2.69
2167 4615 9.624373 GAGTATATAATACTCCATCCGTTCCTA 57.376 37.037 13.72 0.00 38.33 2.94
2168 4616 8.522542 GAGTATATAATACTCCATCCGTTCCT 57.477 38.462 13.72 0.00 38.33 3.36
2188 4636 7.785506 ACCTTACTAGCTCAATTGTAGGAGTAT 59.214 37.037 5.13 0.00 33.66 2.12
2197 4645 6.204688 TGTTCACAACCTTACTAGCTCAATTG 59.795 38.462 0.00 0.00 0.00 2.32
2211 4659 5.690865 TCCTTCTAAACATGTTCACAACCT 58.309 37.500 12.39 0.00 0.00 3.50
2223 4671 2.233676 TGCGAGCTCATCCTTCTAAACA 59.766 45.455 15.40 0.00 0.00 2.83
2224 4672 2.893637 TGCGAGCTCATCCTTCTAAAC 58.106 47.619 15.40 0.00 0.00 2.01
2225 4673 3.610040 TTGCGAGCTCATCCTTCTAAA 57.390 42.857 15.40 0.00 0.00 1.85
2226 4674 3.610040 TTTGCGAGCTCATCCTTCTAA 57.390 42.857 15.40 0.00 0.00 2.10
2227 4675 3.610040 TTTTGCGAGCTCATCCTTCTA 57.390 42.857 15.40 0.00 0.00 2.10
2228 4676 2.479566 TTTTGCGAGCTCATCCTTCT 57.520 45.000 15.40 0.00 0.00 2.85
2250 4698 9.918630 CTCACAAATTCATCCTTCTAAACATTT 57.081 29.630 0.00 0.00 0.00 2.32
2251 4699 9.082313 ACTCACAAATTCATCCTTCTAAACATT 57.918 29.630 0.00 0.00 0.00 2.71
2252 4700 8.641498 ACTCACAAATTCATCCTTCTAAACAT 57.359 30.769 0.00 0.00 0.00 2.71
2275 4723 4.953940 TTGCCTTGCAAAATTTAGGACT 57.046 36.364 8.63 0.00 45.96 3.85
2464 4912 0.251077 CTTGAAGCCCAACTGGAGCT 60.251 55.000 0.00 1.69 41.39 4.09
2480 4928 3.144506 GACATATGTGGCCATCTCCTTG 58.855 50.000 14.43 5.24 32.29 3.61
2599 5047 8.712285 ATGGCAGAAAGAATTTTACATTCATG 57.288 30.769 0.00 0.00 39.27 3.07
2640 5111 3.887716 GAGCTGAGGGCAATATCACATTT 59.112 43.478 0.00 0.00 44.79 2.32
2642 5113 2.224719 GGAGCTGAGGGCAATATCACAT 60.225 50.000 0.00 0.00 44.79 3.21
2649 5120 1.210204 TCTTGGGAGCTGAGGGCAAT 61.210 55.000 0.00 0.00 44.79 3.56
2650 5121 1.426251 TTCTTGGGAGCTGAGGGCAA 61.426 55.000 0.00 0.00 44.79 4.52
2793 5264 5.594725 TGCAAGTGGTAAATAAGTGGTGAAA 59.405 36.000 0.00 0.00 0.00 2.69
2912 5383 6.183360 CGAGAGAGAAGTTATTACACTCAGCT 60.183 42.308 10.16 7.50 34.61 4.24
2970 5441 7.615582 ACATCACAAACTCAGTAACATATGG 57.384 36.000 7.80 0.00 0.00 2.74
3001 5472 5.494618 TCGCCGAATATTTCAAACATAACG 58.505 37.500 0.00 0.00 0.00 3.18
3014 5485 5.235616 ACGACATACATTTTTCGCCGAATAT 59.764 36.000 0.00 0.00 34.81 1.28
3022 5493 5.382303 AGAAAGCACGACATACATTTTTCG 58.618 37.500 0.00 0.00 37.50 3.46
3107 5578 4.229582 TGTTGGGATTATTTGGTCTAGCCT 59.770 41.667 5.06 0.00 38.35 4.58
3108 5579 4.532834 TGTTGGGATTATTTGGTCTAGCC 58.467 43.478 0.00 0.00 37.90 3.93
3109 5580 6.507023 CAATGTTGGGATTATTTGGTCTAGC 58.493 40.000 0.00 0.00 0.00 3.42
3110 5581 6.461509 GGCAATGTTGGGATTATTTGGTCTAG 60.462 42.308 0.00 0.00 0.00 2.43
3111 5582 5.362430 GGCAATGTTGGGATTATTTGGTCTA 59.638 40.000 0.00 0.00 0.00 2.59
3112 5583 4.162131 GGCAATGTTGGGATTATTTGGTCT 59.838 41.667 0.00 0.00 0.00 3.85
3113 5584 4.441792 GGCAATGTTGGGATTATTTGGTC 58.558 43.478 0.00 0.00 0.00 4.02
3114 5585 3.199727 GGGCAATGTTGGGATTATTTGGT 59.800 43.478 0.00 0.00 0.00 3.67
3194 5666 2.926329 ACCACCTCTGGGTTGGATAAAT 59.074 45.455 0.00 0.00 44.73 1.40
3213 5685 5.995897 GGATAAACCATACACACCATAGACC 59.004 44.000 0.00 0.00 38.79 3.85
3248 5720 8.936864 CCTAATTCCTAAAATAGGCTACGATTG 58.063 37.037 0.00 0.00 45.82 2.67
3290 5762 1.004595 GCGGGCTTCTTTACTTACCG 58.995 55.000 0.00 0.00 42.47 4.02
3298 5770 6.206829 GGATTTAGTTATATGCGGGCTTCTTT 59.793 38.462 0.00 0.00 0.00 2.52
3378 5850 1.683385 GGCCAAGAGCTTGTCTTTGTT 59.317 47.619 0.00 0.00 43.54 2.83
3428 5900 5.176592 GGATTTGTTCTAAGGTTAGTCGCT 58.823 41.667 0.00 0.00 32.61 4.93
3449 5921 2.630889 AGACCTCCATCTTGAGTGGA 57.369 50.000 0.00 0.00 43.26 4.02
3492 5964 5.751243 ACAAATAGTGTGTCAACAAGGTC 57.249 39.130 0.00 0.00 39.72 3.85
3497 5969 7.913297 GCTAGAAAAACAAATAGTGTGTCAACA 59.087 33.333 0.00 0.00 40.60 3.33
3520 5992 2.706190 GGGAAGGAAGCCAATCTAGCTA 59.294 50.000 0.00 0.00 40.49 3.32
3565 6037 1.372997 GGCGAAGACACTGAAGCGA 60.373 57.895 0.00 0.00 31.66 4.93
3572 6044 4.003788 CCACCCGGCGAAGACACT 62.004 66.667 9.30 0.00 27.25 3.55
3611 6084 4.573900 AGTAATCAGGCTCTGAACTTGTG 58.426 43.478 8.66 0.00 44.04 3.33
3647 6120 4.081586 TCCGCTACAACATGTGTGGTATTA 60.082 41.667 11.90 0.00 41.89 0.98
3656 6129 6.942532 ATATTCAAATCCGCTACAACATGT 57.057 33.333 0.00 0.00 0.00 3.21
3761 6235 4.559153 ACCTGCACAATTTTTCATGCTAC 58.441 39.130 0.00 0.00 38.90 3.58
3765 6242 4.977741 GTGACCTGCACAATTTTTCATG 57.022 40.909 0.00 0.00 46.91 3.07
3781 6258 7.599630 AATCACATTGCATTTAATTGTGACC 57.400 32.000 11.01 0.00 34.32 4.02
3839 6316 4.566837 ACACATGGGAATCCTCTACCATA 58.433 43.478 0.00 0.00 41.56 2.74
3854 6331 3.780902 TGTGCGTCTAATCTACACATGG 58.219 45.455 0.00 0.00 36.39 3.66
3871 6348 1.762419 CATGTGTGCTTTCACTGTGC 58.238 50.000 2.12 0.00 43.49 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.