Multiple sequence alignment - TraesCS7A01G175400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7A01G175400 chr7A 100.000 3041 0 0 1 3041 128910264 128913304 0.000000e+00 5616.0
1 TraesCS7A01G175400 chr7D 87.049 1274 71 40 1 1194 129794499 129795758 0.000000e+00 1352.0
2 TraesCS7A01G175400 chr7D 88.057 1189 67 30 1757 2900 129795975 129797133 0.000000e+00 1339.0
3 TraesCS7A01G175400 chr7D 95.000 40 1 1 3003 3041 129797578 129797617 9.100000e-06 62.1
4 TraesCS7A01G175400 chr7B 83.565 1077 94 43 132 1182 91207180 91208199 0.000000e+00 931.0
5 TraesCS7A01G175400 chr7B 90.730 507 26 9 2383 2876 91210043 91210541 0.000000e+00 656.0
6 TraesCS7A01G175400 chr7B 88.764 534 20 19 1757 2250 91208429 91208962 4.310000e-173 617.0
7 TraesCS7A01G175400 chr7B 96.429 84 3 0 2958 3041 91211152 91211235 4.090000e-29 139.0
8 TraesCS7A01G175400 chr4B 81.053 95 12 5 1429 1522 640017270 640017359 1.510000e-08 71.3
9 TraesCS7A01G175400 chr4B 92.000 50 2 2 1493 1540 606851082 606851033 5.440000e-08 69.4
10 TraesCS7A01G175400 chr4B 91.304 46 4 0 1479 1524 512553200 512553155 2.530000e-06 63.9
11 TraesCS7A01G175400 chr4B 88.679 53 3 3 1479 1531 28542307 28542258 9.100000e-06 62.1
12 TraesCS7A01G175400 chr3B 90.566 53 3 2 1493 1545 782013948 782013898 5.440000e-08 69.4
13 TraesCS7A01G175400 chr3B 90.196 51 3 2 1493 1541 435816921 435816871 7.040000e-07 65.8
14 TraesCS7A01G175400 chr3B 87.273 55 2 5 1493 1546 445886062 445886012 1.180000e-04 58.4
15 TraesCS7A01G175400 chr4D 91.489 47 3 1 1490 1536 14609666 14609711 2.530000e-06 63.9
16 TraesCS7A01G175400 chr6A 88.462 52 3 3 1480 1530 57728980 57729029 3.270000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7A01G175400 chr7A 128910264 128913304 3040 False 5616.00 5616 100.000000 1 3041 1 chr7A.!!$F1 3040
1 TraesCS7A01G175400 chr7D 129794499 129797617 3118 False 917.70 1352 90.035333 1 3041 3 chr7D.!!$F1 3040
2 TraesCS7A01G175400 chr7B 91207180 91211235 4055 False 585.75 931 89.872000 132 3041 4 chr7B.!!$F1 2909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
729 778 0.178831 AATTCCTCCAGTCCCAGGGT 60.179 55.0 5.01 0.0 0.0 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2426 0.098728 GCCACAGTTCACACACACAC 59.901 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 2.125106 CCGCAGGCTGACCCTTAC 60.125 66.667 20.86 0.00 46.14 2.34
31 32 2.509336 CGCAGGCTGACCCTTACG 60.509 66.667 20.86 6.35 43.06 3.18
32 33 2.663196 GCAGGCTGACCCTTACGT 59.337 61.111 20.86 0.00 43.06 3.57
33 34 1.895238 GCAGGCTGACCCTTACGTA 59.105 57.895 20.86 0.00 43.06 3.57
48 50 2.365408 ACGTAGAGTGGTAGCAAAGC 57.635 50.000 0.00 0.00 0.00 3.51
97 109 8.361139 GTGGAGTACTAGTTTATGCATGTCTAT 58.639 37.037 10.16 0.00 0.00 1.98
107 121 8.418662 AGTTTATGCATGTCTATACTTACCGAA 58.581 33.333 10.16 0.00 0.00 4.30
116 130 8.978874 TGTCTATACTTACCGAACCAATACTA 57.021 34.615 0.00 0.00 0.00 1.82
226 240 6.127980 ACGCATGTACATATACTACTAGCAGG 60.128 42.308 8.32 0.00 32.00 4.85
250 264 8.394040 AGGGTAAGTAGTTTAGAGTAAGTGGTA 58.606 37.037 0.00 0.00 0.00 3.25
275 302 8.621532 ATCTACTTTGCTGTCAAATAAACAGA 57.378 30.769 7.42 0.00 45.64 3.41
290 318 3.293311 AACAGACAAGCGTACGTACAT 57.707 42.857 24.50 10.33 0.00 2.29
291 319 2.592194 ACAGACAAGCGTACGTACATG 58.408 47.619 24.50 20.22 0.00 3.21
353 388 3.844211 AGCTAACCCTCCACAGTAATCAA 59.156 43.478 0.00 0.00 0.00 2.57
354 389 4.475016 AGCTAACCCTCCACAGTAATCAAT 59.525 41.667 0.00 0.00 0.00 2.57
355 390 4.816925 GCTAACCCTCCACAGTAATCAATC 59.183 45.833 0.00 0.00 0.00 2.67
356 391 4.927267 AACCCTCCACAGTAATCAATCA 57.073 40.909 0.00 0.00 0.00 2.57
402 437 2.552315 CACCACCGTAATAATCATGGCC 59.448 50.000 0.00 0.00 0.00 5.36
406 441 2.819608 ACCGTAATAATCATGGCCATGC 59.180 45.455 36.47 21.20 38.65 4.06
408 443 3.119743 CCGTAATAATCATGGCCATGCTG 60.120 47.826 36.47 19.25 38.65 4.41
528 571 4.757019 TGTTACTACCAAGTTCCACACA 57.243 40.909 0.00 0.00 37.15 3.72
567 616 3.802852 AACCCCCAAAGACACGCCC 62.803 63.158 0.00 0.00 0.00 6.13
568 617 3.966543 CCCCCAAAGACACGCCCT 61.967 66.667 0.00 0.00 0.00 5.19
583 632 2.358615 CCTGCCACTAAGCACGCA 60.359 61.111 0.00 0.00 38.00 5.24
665 714 2.677573 AAGTGCAACGCCCGCTTTTC 62.678 55.000 0.00 0.00 45.86 2.29
707 756 4.755123 ACAAGTAAACAATGACCCGAGAAG 59.245 41.667 0.00 0.00 0.00 2.85
708 757 4.884668 AGTAAACAATGACCCGAGAAGA 57.115 40.909 0.00 0.00 0.00 2.87
709 758 4.822026 AGTAAACAATGACCCGAGAAGAG 58.178 43.478 0.00 0.00 0.00 2.85
711 760 4.351874 AAACAATGACCCGAGAAGAGAA 57.648 40.909 0.00 0.00 0.00 2.87
712 761 4.559862 AACAATGACCCGAGAAGAGAAT 57.440 40.909 0.00 0.00 0.00 2.40
713 762 4.559862 ACAATGACCCGAGAAGAGAATT 57.440 40.909 0.00 0.00 0.00 2.17
714 763 4.508662 ACAATGACCCGAGAAGAGAATTC 58.491 43.478 0.00 0.00 0.00 2.17
715 764 3.828875 ATGACCCGAGAAGAGAATTCC 57.171 47.619 0.65 0.00 0.00 3.01
716 765 2.821437 TGACCCGAGAAGAGAATTCCT 58.179 47.619 0.65 0.00 0.00 3.36
718 767 2.101750 GACCCGAGAAGAGAATTCCTCC 59.898 54.545 0.65 0.00 42.97 4.30
719 768 2.111384 CCCGAGAAGAGAATTCCTCCA 58.889 52.381 0.65 0.00 42.97 3.86
720 769 2.102252 CCCGAGAAGAGAATTCCTCCAG 59.898 54.545 0.65 0.00 42.97 3.86
722 771 3.181480 CCGAGAAGAGAATTCCTCCAGTC 60.181 52.174 0.65 0.00 42.97 3.51
723 772 3.181480 CGAGAAGAGAATTCCTCCAGTCC 60.181 52.174 0.65 0.00 42.97 3.85
724 773 3.111484 AGAAGAGAATTCCTCCAGTCCC 58.889 50.000 0.65 0.00 42.97 4.46
725 774 2.649742 AGAGAATTCCTCCAGTCCCA 57.350 50.000 0.65 0.00 42.97 4.37
726 775 2.476199 AGAGAATTCCTCCAGTCCCAG 58.524 52.381 0.65 0.00 42.97 4.45
727 776 1.488393 GAGAATTCCTCCAGTCCCAGG 59.512 57.143 0.65 0.00 35.87 4.45
728 777 0.548510 GAATTCCTCCAGTCCCAGGG 59.451 60.000 0.00 0.00 0.00 4.45
729 778 0.178831 AATTCCTCCAGTCCCAGGGT 60.179 55.000 5.01 0.00 0.00 4.34
736 791 1.293498 CAGTCCCAGGGTTCTGTCG 59.707 63.158 18.92 1.87 39.31 4.35
749 804 0.532573 TCTGTCGAGCTGATGGAACC 59.467 55.000 0.00 0.00 0.00 3.62
755 810 0.820871 GAGCTGATGGAACCTCTCGT 59.179 55.000 0.00 0.00 0.00 4.18
759 814 1.320344 TGATGGAACCTCTCGTCCCG 61.320 60.000 0.00 0.00 0.00 5.14
760 815 2.017559 GATGGAACCTCTCGTCCCGG 62.018 65.000 0.00 0.00 0.00 5.73
761 816 4.144703 GGAACCTCTCGTCCCGGC 62.145 72.222 0.00 0.00 0.00 6.13
762 817 3.069318 GAACCTCTCGTCCCGGCT 61.069 66.667 0.00 0.00 0.00 5.52
763 818 1.751927 GAACCTCTCGTCCCGGCTA 60.752 63.158 0.00 0.00 0.00 3.93
766 822 2.050350 CCTCTCGTCCCGGCTACAA 61.050 63.158 0.00 0.00 0.00 2.41
776 832 1.673033 CCCGGCTACAAGAGTCAACTG 60.673 57.143 0.00 0.00 0.00 3.16
960 1030 3.181967 GCTGAGTACGTGCTGCCG 61.182 66.667 12.07 8.60 0.00 5.69
988 1082 1.811679 GCGGTGCTCTAGCTTGTCC 60.812 63.158 3.26 0.75 42.66 4.02
989 1083 1.153549 CGGTGCTCTAGCTTGTCCC 60.154 63.158 3.26 0.00 42.66 4.46
1012 1106 0.033109 TTGAGAGATGGAGGCGAGGA 60.033 55.000 0.00 0.00 0.00 3.71
1017 1111 2.769621 ATGGAGGCGAGGATGGCA 60.770 61.111 0.00 0.00 43.90 4.92
1018 1112 2.329539 GATGGAGGCGAGGATGGCAA 62.330 60.000 0.00 0.00 43.90 4.52
1019 1113 2.514824 GGAGGCGAGGATGGCAAC 60.515 66.667 0.00 0.00 43.90 4.17
1020 1114 2.892425 GAGGCGAGGATGGCAACG 60.892 66.667 0.00 0.00 43.90 4.10
1203 1299 9.552114 GGTACGCAATTATACTATGTAGTACTG 57.448 37.037 5.39 0.00 41.18 2.74
1215 1311 7.859598 ACTATGTAGTACTGACGTATACTTGC 58.140 38.462 5.39 6.66 34.13 4.01
1221 1326 7.621428 AGTACTGACGTATACTTGCTTTCTA 57.379 36.000 0.00 0.00 0.00 2.10
1222 1327 8.223177 AGTACTGACGTATACTTGCTTTCTAT 57.777 34.615 0.00 0.00 0.00 1.98
1224 1329 7.096884 ACTGACGTATACTTGCTTTCTATGA 57.903 36.000 0.56 0.00 0.00 2.15
1237 1342 6.240894 TGCTTTCTATGATCAGTCTTGGTTT 58.759 36.000 0.09 0.00 0.00 3.27
1238 1343 6.716628 TGCTTTCTATGATCAGTCTTGGTTTT 59.283 34.615 0.09 0.00 0.00 2.43
1239 1344 7.231317 TGCTTTCTATGATCAGTCTTGGTTTTT 59.769 33.333 0.09 0.00 0.00 1.94
1240 1345 8.730680 GCTTTCTATGATCAGTCTTGGTTTTTA 58.269 33.333 0.09 0.00 0.00 1.52
1244 1349 6.749923 ATGATCAGTCTTGGTTTTTAGAGC 57.250 37.500 0.09 0.00 0.00 4.09
1247 1352 6.716628 TGATCAGTCTTGGTTTTTAGAGCATT 59.283 34.615 0.00 0.00 0.00 3.56
1249 1354 7.346751 TCAGTCTTGGTTTTTAGAGCATTTT 57.653 32.000 0.00 0.00 0.00 1.82
1250 1355 7.781056 TCAGTCTTGGTTTTTAGAGCATTTTT 58.219 30.769 0.00 0.00 0.00 1.94
1282 1404 5.447624 TCAGCCTTTTAAAGCACTTTACC 57.552 39.130 2.36 0.00 35.05 2.85
1295 1419 4.772100 AGCACTTTACCTTGCCATATTTGT 59.228 37.500 0.00 0.00 39.75 2.83
1296 1420 5.102313 GCACTTTACCTTGCCATATTTGTC 58.898 41.667 0.00 0.00 32.21 3.18
1297 1421 5.336372 GCACTTTACCTTGCCATATTTGTCA 60.336 40.000 0.00 0.00 32.21 3.58
1298 1422 6.092748 CACTTTACCTTGCCATATTTGTCAC 58.907 40.000 0.00 0.00 0.00 3.67
1302 1431 4.917385 ACCTTGCCATATTTGTCACACTA 58.083 39.130 0.00 0.00 0.00 2.74
1305 1434 4.937696 TGCCATATTTGTCACACTAACG 57.062 40.909 0.00 0.00 0.00 3.18
1344 1473 1.005340 AAAACCGCAACGTACGTCAA 58.995 45.000 23.05 0.00 0.00 3.18
1346 1475 0.528249 AACCGCAACGTACGTCAAGT 60.528 50.000 23.05 13.78 0.00 3.16
1351 1480 3.302350 CCGCAACGTACGTCAAGTTTTAA 60.302 43.478 23.05 0.00 0.00 1.52
1352 1481 3.890246 CGCAACGTACGTCAAGTTTTAAG 59.110 43.478 23.05 3.17 0.00 1.85
1353 1482 3.656266 GCAACGTACGTCAAGTTTTAAGC 59.344 43.478 23.05 9.03 0.00 3.09
1363 1492 6.421202 ACGTCAAGTTTTAAGCAACAACAAAA 59.579 30.769 0.00 0.00 0.00 2.44
1368 1497 9.049974 CAAGTTTTAAGCAACAACAAAATTGTC 57.950 29.630 0.00 0.00 41.31 3.18
1376 1505 6.870965 AGCAACAACAAAATTGTCACTGTTTA 59.129 30.769 10.54 0.00 41.31 2.01
1379 1508 7.589574 ACAACAAAATTGTCACTGTTTAACC 57.410 32.000 0.00 0.00 41.31 2.85
1383 1512 6.750039 ACAAAATTGTCACTGTTTAACCGAAG 59.250 34.615 0.00 0.00 36.50 3.79
1388 1517 3.311596 GTCACTGTTTAACCGAAGTTGCT 59.688 43.478 0.00 0.00 36.68 3.91
1389 1518 4.508861 GTCACTGTTTAACCGAAGTTGCTA 59.491 41.667 0.00 0.00 36.68 3.49
1390 1519 5.006941 GTCACTGTTTAACCGAAGTTGCTAA 59.993 40.000 0.00 0.00 36.68 3.09
1391 1520 5.585445 TCACTGTTTAACCGAAGTTGCTAAA 59.415 36.000 0.00 0.00 36.68 1.85
1392 1521 5.907391 CACTGTTTAACCGAAGTTGCTAAAG 59.093 40.000 0.00 0.00 36.68 1.85
1394 1523 6.485648 ACTGTTTAACCGAAGTTGCTAAAGAT 59.514 34.615 0.00 0.00 36.68 2.40
1408 1537 8.722394 AGTTGCTAAAGATTCAGTTAACTAAGC 58.278 33.333 8.04 6.41 0.00 3.09
1410 1539 9.938280 TTGCTAAAGATTCAGTTAACTAAGCTA 57.062 29.630 8.04 2.56 0.00 3.32
1412 1541 9.589111 GCTAAAGATTCAGTTAACTAAGCTACT 57.411 33.333 8.04 1.14 0.00 2.57
1415 1544 9.646427 AAAGATTCAGTTAACTAAGCTACTCTG 57.354 33.333 8.04 0.00 0.00 3.35
1416 1545 7.262048 AGATTCAGTTAACTAAGCTACTCTGC 58.738 38.462 8.04 0.00 0.00 4.26
1417 1546 4.982999 TCAGTTAACTAAGCTACTCTGCG 58.017 43.478 8.04 0.00 38.13 5.18
1418 1547 3.548268 CAGTTAACTAAGCTACTCTGCGC 59.452 47.826 8.04 0.00 38.13 6.09
1419 1548 2.858941 GTTAACTAAGCTACTCTGCGCC 59.141 50.000 4.18 0.00 38.13 6.53
1420 1549 1.187087 AACTAAGCTACTCTGCGCCT 58.813 50.000 4.18 0.00 38.13 5.52
1421 1550 0.741915 ACTAAGCTACTCTGCGCCTC 59.258 55.000 4.18 0.00 38.13 4.70
1422 1551 0.317436 CTAAGCTACTCTGCGCCTCG 60.317 60.000 4.18 0.00 38.13 4.63
1423 1552 1.725557 TAAGCTACTCTGCGCCTCGG 61.726 60.000 4.18 0.00 38.13 4.63
1424 1553 3.518998 GCTACTCTGCGCCTCGGA 61.519 66.667 4.18 0.00 0.00 4.55
1425 1554 3.064987 GCTACTCTGCGCCTCGGAA 62.065 63.158 4.18 0.00 0.00 4.30
1426 1555 1.736586 CTACTCTGCGCCTCGGAAT 59.263 57.895 4.18 0.00 0.00 3.01
1427 1556 0.952280 CTACTCTGCGCCTCGGAATA 59.048 55.000 4.18 0.00 0.00 1.75
1428 1557 1.337071 CTACTCTGCGCCTCGGAATAA 59.663 52.381 4.18 0.00 0.00 1.40
1429 1558 0.753262 ACTCTGCGCCTCGGAATAAT 59.247 50.000 4.18 0.00 0.00 1.28
1430 1559 1.961394 ACTCTGCGCCTCGGAATAATA 59.039 47.619 4.18 0.00 0.00 0.98
1431 1560 2.563179 ACTCTGCGCCTCGGAATAATAT 59.437 45.455 4.18 0.00 0.00 1.28
1432 1561 3.006967 ACTCTGCGCCTCGGAATAATATT 59.993 43.478 4.18 0.00 0.00 1.28
1433 1562 3.997021 CTCTGCGCCTCGGAATAATATTT 59.003 43.478 4.18 0.00 0.00 1.40
1434 1563 5.142061 TCTGCGCCTCGGAATAATATTTA 57.858 39.130 4.18 0.00 0.00 1.40
1435 1564 4.927425 TCTGCGCCTCGGAATAATATTTAC 59.073 41.667 4.18 0.00 0.00 2.01
1436 1565 4.890088 TGCGCCTCGGAATAATATTTACT 58.110 39.130 4.18 0.00 0.00 2.24
1437 1566 4.927425 TGCGCCTCGGAATAATATTTACTC 59.073 41.667 4.18 0.00 0.00 2.59
1438 1567 4.329256 GCGCCTCGGAATAATATTTACTCC 59.671 45.833 0.00 0.00 0.00 3.85
1439 1568 4.868734 CGCCTCGGAATAATATTTACTCCC 59.131 45.833 0.00 0.00 0.00 4.30
1440 1569 5.183969 GCCTCGGAATAATATTTACTCCCC 58.816 45.833 0.00 0.00 0.00 4.81
1441 1570 5.742063 CCTCGGAATAATATTTACTCCCCC 58.258 45.833 0.00 0.00 0.00 5.40
1462 1591 6.803154 CCCCCTAAAAGAAATATAAGAGCG 57.197 41.667 0.00 0.00 0.00 5.03
1463 1592 5.181433 CCCCCTAAAAGAAATATAAGAGCGC 59.819 44.000 0.00 0.00 0.00 5.92
1464 1593 5.181433 CCCCTAAAAGAAATATAAGAGCGCC 59.819 44.000 2.29 0.00 0.00 6.53
1465 1594 5.998363 CCCTAAAAGAAATATAAGAGCGCCT 59.002 40.000 2.29 0.00 0.00 5.52
1466 1595 6.147985 CCCTAAAAGAAATATAAGAGCGCCTC 59.852 42.308 2.29 0.45 0.00 4.70
1467 1596 6.706270 CCTAAAAGAAATATAAGAGCGCCTCA 59.294 38.462 2.29 0.00 32.06 3.86
1468 1597 7.226720 CCTAAAAGAAATATAAGAGCGCCTCAA 59.773 37.037 2.29 0.00 32.06 3.02
1469 1598 7.391148 AAAAGAAATATAAGAGCGCCTCAAA 57.609 32.000 2.29 0.00 32.06 2.69
1470 1599 7.391148 AAAGAAATATAAGAGCGCCTCAAAA 57.609 32.000 2.29 0.00 32.06 2.44
1471 1600 7.573968 AAGAAATATAAGAGCGCCTCAAAAT 57.426 32.000 2.29 0.00 32.06 1.82
1472 1601 8.677148 AAGAAATATAAGAGCGCCTCAAAATA 57.323 30.769 2.29 0.00 32.06 1.40
1473 1602 8.677148 AGAAATATAAGAGCGCCTCAAAATAA 57.323 30.769 2.29 0.00 32.06 1.40
1474 1603 9.289782 AGAAATATAAGAGCGCCTCAAAATAAT 57.710 29.630 2.29 0.00 32.06 1.28
1481 1610 8.451908 AAGAGCGCCTCAAAATAATATTTACT 57.548 30.769 2.29 0.00 32.06 2.24
1482 1611 9.555727 AAGAGCGCCTCAAAATAATATTTACTA 57.444 29.630 2.29 0.00 32.06 1.82
1483 1612 8.989980 AGAGCGCCTCAAAATAATATTTACTAC 58.010 33.333 2.29 0.00 32.06 2.73
1484 1613 8.095937 AGCGCCTCAAAATAATATTTACTACC 57.904 34.615 2.29 0.00 0.00 3.18
1485 1614 7.174426 AGCGCCTCAAAATAATATTTACTACCC 59.826 37.037 2.29 0.00 0.00 3.69
1486 1615 7.174426 GCGCCTCAAAATAATATTTACTACCCT 59.826 37.037 0.00 0.00 0.00 4.34
1487 1616 8.718734 CGCCTCAAAATAATATTTACTACCCTC 58.281 37.037 0.00 0.00 0.00 4.30
1488 1617 8.718734 GCCTCAAAATAATATTTACTACCCTCG 58.281 37.037 0.00 0.00 0.00 4.63
1489 1618 9.774413 CCTCAAAATAATATTTACTACCCTCGT 57.226 33.333 0.00 0.00 0.00 4.18
1495 1624 3.978718 ATTTACTACCCTCGTAGACGC 57.021 47.619 4.36 0.00 44.18 5.19
1496 1625 2.698855 TTACTACCCTCGTAGACGCT 57.301 50.000 4.36 0.00 44.18 5.07
1497 1626 2.231215 TACTACCCTCGTAGACGCTC 57.769 55.000 4.36 0.00 44.18 5.03
1498 1627 0.540923 ACTACCCTCGTAGACGCTCT 59.459 55.000 4.36 0.00 44.18 4.09
1499 1628 1.065564 ACTACCCTCGTAGACGCTCTT 60.066 52.381 4.36 0.00 44.18 2.85
1500 1629 2.169352 ACTACCCTCGTAGACGCTCTTA 59.831 50.000 4.36 0.00 44.18 2.10
1501 1630 2.345124 ACCCTCGTAGACGCTCTTAT 57.655 50.000 0.00 0.00 39.60 1.73
1502 1631 3.482156 ACCCTCGTAGACGCTCTTATA 57.518 47.619 0.00 0.00 39.60 0.98
1503 1632 4.018484 ACCCTCGTAGACGCTCTTATAT 57.982 45.455 0.00 0.00 39.60 0.86
1504 1633 4.396522 ACCCTCGTAGACGCTCTTATATT 58.603 43.478 0.00 0.00 39.60 1.28
1505 1634 4.826183 ACCCTCGTAGACGCTCTTATATTT 59.174 41.667 0.00 0.00 39.60 1.40
1506 1635 5.048852 ACCCTCGTAGACGCTCTTATATTTC 60.049 44.000 0.00 0.00 39.60 2.17
1507 1636 5.181622 CCCTCGTAGACGCTCTTATATTTCT 59.818 44.000 0.00 0.00 39.60 2.52
1508 1637 6.294065 CCCTCGTAGACGCTCTTATATTTCTT 60.294 42.308 0.00 0.00 39.60 2.52
1509 1638 7.140048 CCTCGTAGACGCTCTTATATTTCTTT 58.860 38.462 0.00 0.00 39.60 2.52
1510 1639 8.288208 CCTCGTAGACGCTCTTATATTTCTTTA 58.712 37.037 0.00 0.00 39.60 1.85
1511 1640 9.105206 CTCGTAGACGCTCTTATATTTCTTTAC 57.895 37.037 0.00 0.00 39.60 2.01
1512 1641 8.615211 TCGTAGACGCTCTTATATTTCTTTACA 58.385 33.333 0.00 0.00 39.60 2.41
1513 1642 8.893884 CGTAGACGCTCTTATATTTCTTTACAG 58.106 37.037 0.00 0.00 0.00 2.74
1514 1643 9.947669 GTAGACGCTCTTATATTTCTTTACAGA 57.052 33.333 0.00 0.00 0.00 3.41
1516 1645 8.138712 AGACGCTCTTATATTTCTTTACAGAGG 58.861 37.037 0.00 0.00 0.00 3.69
1517 1646 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
1518 1647 7.069578 ACGCTCTTATATTTCTTTACAGAGGGA 59.930 37.037 14.96 0.00 40.49 4.20
1519 1648 7.596995 CGCTCTTATATTTCTTTACAGAGGGAG 59.403 40.741 4.76 0.00 40.49 4.30
1520 1649 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
1527 1656 8.896722 ATTTCTTTACAGAGGGAGTACTTAGA 57.103 34.615 0.00 0.00 0.00 2.10
1528 1657 8.896722 TTTCTTTACAGAGGGAGTACTTAGAT 57.103 34.615 0.00 0.00 0.00 1.98
1529 1658 9.986157 TTTCTTTACAGAGGGAGTACTTAGATA 57.014 33.333 0.00 0.00 0.00 1.98
1530 1659 9.629878 TTCTTTACAGAGGGAGTACTTAGATAG 57.370 37.037 0.00 0.00 0.00 2.08
1531 1660 9.000978 TCTTTACAGAGGGAGTACTTAGATAGA 57.999 37.037 0.00 0.00 0.00 1.98
1532 1661 9.280174 CTTTACAGAGGGAGTACTTAGATAGAG 57.720 40.741 0.00 0.00 0.00 2.43
1533 1662 8.564364 TTACAGAGGGAGTACTTAGATAGAGA 57.436 38.462 0.00 0.00 0.00 3.10
1534 1663 7.074653 ACAGAGGGAGTACTTAGATAGAGAG 57.925 44.000 0.00 0.00 0.00 3.20
1535 1664 6.847567 ACAGAGGGAGTACTTAGATAGAGAGA 59.152 42.308 0.00 0.00 0.00 3.10
1536 1665 7.016268 ACAGAGGGAGTACTTAGATAGAGAGAG 59.984 44.444 0.00 0.00 0.00 3.20
1537 1666 7.016268 CAGAGGGAGTACTTAGATAGAGAGAGT 59.984 44.444 0.00 0.00 0.00 3.24
1538 1667 8.236643 AGAGGGAGTACTTAGATAGAGAGAGTA 58.763 40.741 0.00 0.00 0.00 2.59
1539 1668 8.984112 AGGGAGTACTTAGATAGAGAGAGTAT 57.016 38.462 0.00 0.00 0.00 2.12
1551 1680 8.945193 AGATAGAGAGAGTATATATGAGGGACC 58.055 40.741 0.00 0.00 0.00 4.46
1552 1681 8.885900 ATAGAGAGAGTATATATGAGGGACCT 57.114 38.462 0.00 0.00 0.00 3.85
1553 1682 7.208064 AGAGAGAGTATATATGAGGGACCTC 57.792 44.000 11.44 11.44 43.01 3.85
1561 1690 3.257627 TGAGGGACCTCACAACCTT 57.742 52.632 16.79 0.00 46.80 3.50
1562 1691 1.518367 TGAGGGACCTCACAACCTTT 58.482 50.000 16.79 0.00 46.80 3.11
1563 1692 1.850345 TGAGGGACCTCACAACCTTTT 59.150 47.619 16.79 0.00 46.80 2.27
1564 1693 2.243736 TGAGGGACCTCACAACCTTTTT 59.756 45.455 16.79 0.00 46.80 1.94
1565 1694 2.885266 GAGGGACCTCACAACCTTTTTC 59.115 50.000 13.37 0.00 42.31 2.29
1566 1695 2.514160 AGGGACCTCACAACCTTTTTCT 59.486 45.455 0.00 0.00 0.00 2.52
1567 1696 3.052869 AGGGACCTCACAACCTTTTTCTT 60.053 43.478 0.00 0.00 0.00 2.52
1568 1697 3.318275 GGGACCTCACAACCTTTTTCTTC 59.682 47.826 0.00 0.00 0.00 2.87
1569 1698 4.207955 GGACCTCACAACCTTTTTCTTCT 58.792 43.478 0.00 0.00 0.00 2.85
1570 1699 4.036852 GGACCTCACAACCTTTTTCTTCTG 59.963 45.833 0.00 0.00 0.00 3.02
1571 1700 4.600062 ACCTCACAACCTTTTTCTTCTGT 58.400 39.130 0.00 0.00 0.00 3.41
1572 1701 5.016831 ACCTCACAACCTTTTTCTTCTGTT 58.983 37.500 0.00 0.00 0.00 3.16
1573 1702 5.105756 ACCTCACAACCTTTTTCTTCTGTTG 60.106 40.000 0.00 0.00 41.47 3.33
1574 1703 5.125417 CCTCACAACCTTTTTCTTCTGTTGA 59.875 40.000 7.59 0.00 38.81 3.18
1575 1704 6.350110 CCTCACAACCTTTTTCTTCTGTTGAA 60.350 38.462 7.59 0.00 38.81 2.69
1576 1705 6.987386 TCACAACCTTTTTCTTCTGTTGAAA 58.013 32.000 7.59 0.00 38.81 2.69
1577 1706 7.437748 TCACAACCTTTTTCTTCTGTTGAAAA 58.562 30.769 7.59 0.00 40.34 2.29
1578 1707 7.928706 TCACAACCTTTTTCTTCTGTTGAAAAA 59.071 29.630 15.99 15.99 45.36 1.94
1579 1708 8.009409 CACAACCTTTTTCTTCTGTTGAAAAAC 58.991 33.333 7.59 0.00 43.82 2.43
1580 1709 7.931407 ACAACCTTTTTCTTCTGTTGAAAAACT 59.069 29.630 7.59 5.50 43.82 2.66
1581 1710 8.435430 CAACCTTTTTCTTCTGTTGAAAAACTC 58.565 33.333 14.24 0.00 43.82 3.01
1582 1711 7.666623 ACCTTTTTCTTCTGTTGAAAAACTCA 58.333 30.769 14.24 0.00 43.82 3.41
1583 1712 8.314021 ACCTTTTTCTTCTGTTGAAAAACTCAT 58.686 29.630 14.24 4.12 43.82 2.90
1584 1713 8.811378 CCTTTTTCTTCTGTTGAAAAACTCATC 58.189 33.333 14.24 0.00 43.82 2.92
1585 1714 9.578439 CTTTTTCTTCTGTTGAAAAACTCATCT 57.422 29.630 14.24 0.00 43.82 2.90
1586 1715 9.927668 TTTTTCTTCTGTTGAAAAACTCATCTT 57.072 25.926 14.24 0.00 43.82 2.40
1587 1716 9.927668 TTTTCTTCTGTTGAAAAACTCATCTTT 57.072 25.926 0.00 0.00 39.50 2.52
1588 1717 9.927668 TTTCTTCTGTTGAAAAACTCATCTTTT 57.072 25.926 0.00 0.00 32.78 2.27
1589 1718 9.927668 TTCTTCTGTTGAAAAACTCATCTTTTT 57.072 25.926 0.00 0.00 36.29 1.94
1615 1744 9.829507 TTTTTGATGGTATGTTGAAAAACTCAT 57.170 25.926 0.00 0.00 32.78 2.90
1616 1745 9.474920 TTTTGATGGTATGTTGAAAAACTCATC 57.525 29.630 0.00 0.00 32.78 2.92
1617 1746 8.408043 TTGATGGTATGTTGAAAAACTCATCT 57.592 30.769 0.00 0.00 32.78 2.90
1618 1747 8.408043 TGATGGTATGTTGAAAAACTCATCTT 57.592 30.769 0.00 0.00 32.78 2.40
1619 1748 9.513906 TGATGGTATGTTGAAAAACTCATCTTA 57.486 29.630 0.00 0.00 32.78 2.10
1647 1776 9.696572 ATAGTACACATCAGGAACTAAACTAGA 57.303 33.333 0.00 0.00 36.02 2.43
1648 1777 7.828712 AGTACACATCAGGAACTAAACTAGAC 58.171 38.462 0.00 0.00 36.02 2.59
1649 1778 6.665992 ACACATCAGGAACTAAACTAGACA 57.334 37.500 0.00 0.00 36.02 3.41
1650 1779 6.456501 ACACATCAGGAACTAAACTAGACAC 58.543 40.000 0.00 0.00 36.02 3.67
1651 1780 6.267928 ACACATCAGGAACTAAACTAGACACT 59.732 38.462 0.00 0.00 36.02 3.55
1652 1781 6.587990 CACATCAGGAACTAAACTAGACACTG 59.412 42.308 0.00 0.00 36.02 3.66
1653 1782 6.493802 ACATCAGGAACTAAACTAGACACTGA 59.506 38.462 0.00 0.00 36.02 3.41
1654 1783 6.576662 TCAGGAACTAAACTAGACACTGAG 57.423 41.667 0.00 0.00 36.02 3.35
1655 1784 5.047943 TCAGGAACTAAACTAGACACTGAGC 60.048 44.000 0.00 0.00 36.02 4.26
1656 1785 4.833380 AGGAACTAAACTAGACACTGAGCA 59.167 41.667 0.00 0.00 36.02 4.26
1657 1786 4.924462 GGAACTAAACTAGACACTGAGCAC 59.076 45.833 0.00 0.00 0.00 4.40
1658 1787 5.279056 GGAACTAAACTAGACACTGAGCACT 60.279 44.000 0.00 0.00 0.00 4.40
1659 1788 5.127693 ACTAAACTAGACACTGAGCACTG 57.872 43.478 0.00 0.00 0.00 3.66
1660 1789 2.447244 AACTAGACACTGAGCACTGC 57.553 50.000 0.00 0.00 0.00 4.40
1661 1790 1.332195 ACTAGACACTGAGCACTGCA 58.668 50.000 3.30 0.00 0.00 4.41
1662 1791 1.000283 ACTAGACACTGAGCACTGCAC 60.000 52.381 3.30 0.00 0.00 4.57
1663 1792 1.000171 CTAGACACTGAGCACTGCACA 60.000 52.381 3.30 2.05 0.00 4.57
1664 1793 0.395686 AGACACTGAGCACTGCACAT 59.604 50.000 3.30 0.00 0.00 3.21
1665 1794 1.202734 AGACACTGAGCACTGCACATT 60.203 47.619 3.30 0.00 0.00 2.71
1666 1795 1.605710 GACACTGAGCACTGCACATTT 59.394 47.619 3.30 0.00 0.00 2.32
1667 1796 1.335810 ACACTGAGCACTGCACATTTG 59.664 47.619 3.30 6.28 0.00 2.32
1668 1797 1.335810 CACTGAGCACTGCACATTTGT 59.664 47.619 3.30 0.00 0.00 2.83
1669 1798 2.549329 CACTGAGCACTGCACATTTGTA 59.451 45.455 3.30 0.00 0.00 2.41
1670 1799 2.549754 ACTGAGCACTGCACATTTGTAC 59.450 45.455 3.30 0.00 0.00 2.90
1671 1800 1.879380 TGAGCACTGCACATTTGTACC 59.121 47.619 3.30 0.00 0.00 3.34
1672 1801 0.874390 AGCACTGCACATTTGTACCG 59.126 50.000 3.30 0.00 0.00 4.02
1673 1802 0.871722 GCACTGCACATTTGTACCGA 59.128 50.000 0.00 0.00 0.00 4.69
1674 1803 1.265635 GCACTGCACATTTGTACCGAA 59.734 47.619 0.00 0.00 0.00 4.30
1675 1804 2.916111 CACTGCACATTTGTACCGAAC 58.084 47.619 0.00 0.00 0.00 3.95
1676 1805 2.289274 CACTGCACATTTGTACCGAACA 59.711 45.455 0.00 0.00 35.88 3.18
1677 1806 2.289547 ACTGCACATTTGTACCGAACAC 59.710 45.455 0.00 0.00 38.00 3.32
1678 1807 1.604755 TGCACATTTGTACCGAACACC 59.395 47.619 0.00 0.00 38.00 4.16
1679 1808 1.068816 GCACATTTGTACCGAACACCC 60.069 52.381 0.00 0.00 38.00 4.61
1680 1809 2.500229 CACATTTGTACCGAACACCCT 58.500 47.619 0.00 0.00 38.00 4.34
1681 1810 2.225491 CACATTTGTACCGAACACCCTG 59.775 50.000 0.00 0.00 38.00 4.45
1682 1811 1.810151 CATTTGTACCGAACACCCTGG 59.190 52.381 0.00 0.00 38.00 4.45
1683 1812 0.535553 TTTGTACCGAACACCCTGGC 60.536 55.000 0.00 0.00 38.00 4.85
1684 1813 1.412453 TTGTACCGAACACCCTGGCT 61.412 55.000 0.00 0.00 38.00 4.75
1685 1814 1.079336 GTACCGAACACCCTGGCTC 60.079 63.158 0.00 0.00 0.00 4.70
1686 1815 1.229082 TACCGAACACCCTGGCTCT 60.229 57.895 0.00 0.00 0.00 4.09
1687 1816 1.255667 TACCGAACACCCTGGCTCTC 61.256 60.000 0.00 0.00 0.00 3.20
1688 1817 2.583441 CCGAACACCCTGGCTCTCA 61.583 63.158 0.00 0.00 0.00 3.27
1689 1818 1.599047 CGAACACCCTGGCTCTCAT 59.401 57.895 0.00 0.00 0.00 2.90
1690 1819 0.460987 CGAACACCCTGGCTCTCATC 60.461 60.000 0.00 0.00 0.00 2.92
1691 1820 0.908198 GAACACCCTGGCTCTCATCT 59.092 55.000 0.00 0.00 0.00 2.90
1692 1821 0.908198 AACACCCTGGCTCTCATCTC 59.092 55.000 0.00 0.00 0.00 2.75
1693 1822 0.252421 ACACCCTGGCTCTCATCTCA 60.252 55.000 0.00 0.00 0.00 3.27
1694 1823 0.177604 CACCCTGGCTCTCATCTCAC 59.822 60.000 0.00 0.00 0.00 3.51
1695 1824 1.326213 ACCCTGGCTCTCATCTCACG 61.326 60.000 0.00 0.00 0.00 4.35
1696 1825 1.039785 CCCTGGCTCTCATCTCACGA 61.040 60.000 0.00 0.00 0.00 4.35
1697 1826 0.385029 CCTGGCTCTCATCTCACGAG 59.615 60.000 0.00 0.00 0.00 4.18
1698 1827 0.385029 CTGGCTCTCATCTCACGAGG 59.615 60.000 0.00 0.00 0.00 4.63
1699 1828 1.039785 TGGCTCTCATCTCACGAGGG 61.040 60.000 0.00 0.00 33.84 4.30
1701 1830 1.358402 CTCTCATCTCACGAGGGCG 59.642 63.158 0.00 0.00 44.79 6.13
1702 1831 2.069465 CTCTCATCTCACGAGGGCGG 62.069 65.000 0.00 0.00 43.17 6.13
1703 1832 3.781770 CTCATCTCACGAGGGCGGC 62.782 68.421 0.00 0.00 43.17 6.53
1704 1833 4.147449 CATCTCACGAGGGCGGCA 62.147 66.667 12.47 0.00 43.17 5.69
1705 1834 4.148825 ATCTCACGAGGGCGGCAC 62.149 66.667 12.47 0.00 43.17 5.01
1713 1842 4.603535 AGGGCGGCACTGGCTTTT 62.604 61.111 12.47 0.00 40.87 2.27
1714 1843 2.675075 GGGCGGCACTGGCTTTTA 60.675 61.111 12.47 0.00 40.87 1.52
1715 1844 2.566529 GGCGGCACTGGCTTTTAC 59.433 61.111 3.07 0.00 40.87 2.01
1716 1845 1.971695 GGCGGCACTGGCTTTTACT 60.972 57.895 3.07 0.00 40.87 2.24
1717 1846 1.502190 GCGGCACTGGCTTTTACTC 59.498 57.895 0.00 0.00 40.87 2.59
1718 1847 1.923227 GCGGCACTGGCTTTTACTCC 61.923 60.000 0.00 0.00 40.87 3.85
1719 1848 0.605319 CGGCACTGGCTTTTACTCCA 60.605 55.000 0.52 0.00 40.87 3.86
1720 1849 1.616159 GGCACTGGCTTTTACTCCAA 58.384 50.000 0.00 0.00 40.87 3.53
1721 1850 1.541588 GGCACTGGCTTTTACTCCAAG 59.458 52.381 0.00 0.00 40.87 3.61
1722 1851 2.230660 GCACTGGCTTTTACTCCAAGT 58.769 47.619 0.00 0.00 36.96 3.16
1723 1852 2.226674 GCACTGGCTTTTACTCCAAGTC 59.773 50.000 0.00 0.00 36.96 3.01
1724 1853 3.476552 CACTGGCTTTTACTCCAAGTCA 58.523 45.455 0.00 0.00 34.67 3.41
1725 1854 3.251004 CACTGGCTTTTACTCCAAGTCAC 59.749 47.826 0.00 0.00 32.43 3.67
1726 1855 3.118038 ACTGGCTTTTACTCCAAGTCACA 60.118 43.478 0.00 0.00 32.43 3.58
1727 1856 4.074970 CTGGCTTTTACTCCAAGTCACAT 58.925 43.478 0.00 0.00 32.43 3.21
1728 1857 5.221843 ACTGGCTTTTACTCCAAGTCACATA 60.222 40.000 0.00 0.00 32.43 2.29
1729 1858 5.626142 TGGCTTTTACTCCAAGTCACATAA 58.374 37.500 0.00 0.00 30.80 1.90
1730 1859 6.065374 TGGCTTTTACTCCAAGTCACATAAA 58.935 36.000 0.00 0.00 30.80 1.40
1731 1860 6.719370 TGGCTTTTACTCCAAGTCACATAAAT 59.281 34.615 0.00 0.00 30.80 1.40
1732 1861 7.885922 TGGCTTTTACTCCAAGTCACATAAATA 59.114 33.333 0.00 0.00 30.80 1.40
1733 1862 8.903820 GGCTTTTACTCCAAGTCACATAAATAT 58.096 33.333 0.00 0.00 0.00 1.28
1738 1867 7.865706 ACTCCAAGTCACATAAATATTGACC 57.134 36.000 1.67 0.00 40.52 4.02
1739 1868 6.538742 ACTCCAAGTCACATAAATATTGACCG 59.461 38.462 1.67 0.00 40.52 4.79
1740 1869 5.820423 TCCAAGTCACATAAATATTGACCGG 59.180 40.000 0.00 0.00 40.52 5.28
1741 1870 5.820423 CCAAGTCACATAAATATTGACCGGA 59.180 40.000 9.46 0.00 40.52 5.14
1742 1871 6.486657 CCAAGTCACATAAATATTGACCGGAT 59.513 38.462 9.46 0.00 40.52 4.18
1743 1872 7.659799 CCAAGTCACATAAATATTGACCGGATA 59.340 37.037 9.46 0.00 40.52 2.59
1744 1873 9.051679 CAAGTCACATAAATATTGACCGGATAA 57.948 33.333 9.46 2.40 40.52 1.75
1745 1874 8.603242 AGTCACATAAATATTGACCGGATAAC 57.397 34.615 9.46 0.00 40.52 1.89
1746 1875 8.208224 AGTCACATAAATATTGACCGGATAACA 58.792 33.333 9.46 0.00 40.52 2.41
1747 1876 8.999431 GTCACATAAATATTGACCGGATAACAT 58.001 33.333 9.46 0.00 34.72 2.71
1754 1883 8.792830 AATATTGACCGGATAACATATCTTGG 57.207 34.615 9.46 7.29 0.00 3.61
1755 1884 5.623956 TTGACCGGATAACATATCTTGGT 57.376 39.130 9.46 11.81 32.39 3.67
1785 1920 0.464373 CTGGGTGTGCAGTGTTCACT 60.464 55.000 15.44 0.00 35.58 3.41
1870 2005 0.397941 CCAGTCCTGCAACCTCAAGA 59.602 55.000 0.00 0.00 0.00 3.02
2034 2169 2.992114 AAGAGCTCCGTCTGCCGT 60.992 61.111 10.93 0.00 33.66 5.68
2080 2225 1.956170 GCTATCCATGGCGTCCACG 60.956 63.158 6.96 0.00 35.80 4.94
2103 2248 2.430382 TTCGCCGCCGTCTTCTTCTT 62.430 55.000 0.00 0.00 35.54 2.52
2105 2250 1.079750 GCCGCCGTCTTCTTCTTCT 60.080 57.895 0.00 0.00 0.00 2.85
2235 2409 4.095036 GTGCTTGAATAAAGTAGGGAGTGC 59.905 45.833 0.00 0.00 38.25 4.40
2239 2413 3.259876 TGAATAAAGTAGGGAGTGCGTGT 59.740 43.478 0.00 0.00 0.00 4.49
2241 2415 0.756903 AAAGTAGGGAGTGCGTGTGT 59.243 50.000 0.00 0.00 0.00 3.72
2242 2416 0.033504 AAGTAGGGAGTGCGTGTGTG 59.966 55.000 0.00 0.00 0.00 3.82
2243 2417 1.113517 AGTAGGGAGTGCGTGTGTGT 61.114 55.000 0.00 0.00 0.00 3.72
2244 2418 0.944311 GTAGGGAGTGCGTGTGTGTG 60.944 60.000 0.00 0.00 0.00 3.82
2245 2419 1.396607 TAGGGAGTGCGTGTGTGTGT 61.397 55.000 0.00 0.00 0.00 3.72
2246 2420 2.534019 GGGAGTGCGTGTGTGTGTG 61.534 63.158 0.00 0.00 0.00 3.82
2247 2421 1.813753 GGAGTGCGTGTGTGTGTGT 60.814 57.895 0.00 0.00 0.00 3.72
2248 2422 1.348250 GAGTGCGTGTGTGTGTGTG 59.652 57.895 0.00 0.00 0.00 3.82
2249 2423 1.358725 GAGTGCGTGTGTGTGTGTGT 61.359 55.000 0.00 0.00 0.00 3.72
2250 2424 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2251 2425 1.669437 TGCGTGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
2252 2426 1.225991 GCGTGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
2253 2427 1.906994 GCGTGTGTGTGTGTGTGTGT 61.907 55.000 0.00 0.00 0.00 3.72
2254 2428 0.179227 CGTGTGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2255 2429 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2256 2430 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2257 2431 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2258 2432 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2259 2433 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2260 2434 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2261 2435 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2262 2436 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2263 2437 1.152510 GTGTGTGTGTGTGTGTGTGA 58.847 50.000 0.00 0.00 0.00 3.58
2264 2438 1.533299 GTGTGTGTGTGTGTGTGTGAA 59.467 47.619 0.00 0.00 0.00 3.18
2265 2439 1.533299 TGTGTGTGTGTGTGTGTGAAC 59.467 47.619 0.00 0.00 0.00 3.18
2266 2440 1.804151 GTGTGTGTGTGTGTGTGAACT 59.196 47.619 0.00 0.00 0.00 3.01
2267 2441 1.803555 TGTGTGTGTGTGTGTGAACTG 59.196 47.619 0.00 0.00 0.00 3.16
2268 2442 1.804151 GTGTGTGTGTGTGTGAACTGT 59.196 47.619 0.00 0.00 0.00 3.55
2269 2443 1.803555 TGTGTGTGTGTGTGAACTGTG 59.196 47.619 0.00 0.00 0.00 3.66
2283 2459 1.157870 ACTGTGGCGTGTGTTGCTAC 61.158 55.000 0.00 0.00 43.29 3.58
2290 2466 3.058570 TGGCGTGTGTTGCTACAAATTAG 60.059 43.478 1.60 0.00 35.69 1.73
2301 2477 6.553953 TGCTACAAATTAGTGGAGGATGTA 57.446 37.500 0.00 0.00 29.23 2.29
2315 2492 4.263243 GGAGGATGTAATGAGAATGAGGGG 60.263 50.000 0.00 0.00 0.00 4.79
2327 2504 1.207791 ATGAGGGGCTGTTAGTCCAG 58.792 55.000 1.50 0.00 43.30 3.86
2328 2505 0.909610 TGAGGGGCTGTTAGTCCAGG 60.910 60.000 1.50 0.00 43.30 4.45
2335 2512 1.137282 GCTGTTAGTCCAGGAGTAGCC 59.863 57.143 14.07 6.05 32.92 3.93
2337 2514 0.745468 GTTAGTCCAGGAGTAGCCGG 59.255 60.000 6.87 0.00 43.43 6.13
2344 2521 1.228769 AGGAGTAGCCGGTGTGTCA 60.229 57.895 1.90 0.00 43.43 3.58
2352 2529 0.037326 GCCGGTGTGTCAATCTCTCA 60.037 55.000 1.90 0.00 0.00 3.27
2360 2537 6.402222 GGTGTGTCAATCTCTCATTTCTACT 58.598 40.000 0.00 0.00 0.00 2.57
2377 2554 3.775316 TCTACTCCTAAAAAGGCCCTCTG 59.225 47.826 0.00 0.00 0.00 3.35
2418 3571 3.708563 TTGGCTTGAAGTTGCTGTAAC 57.291 42.857 0.00 0.00 39.65 2.50
2422 3575 4.099266 TGGCTTGAAGTTGCTGTAACAAAT 59.901 37.500 11.16 0.00 41.88 2.32
2429 3582 7.990917 TGAAGTTGCTGTAACAAATAAAGTGA 58.009 30.769 11.16 0.00 41.88 3.41
2472 3625 4.379290 GCTTGAAGCCTTTCATGAGAGTTC 60.379 45.833 5.74 10.16 42.60 3.01
2490 3643 7.757173 TGAGAGTTCGAGTTCTGAAATGAATAG 59.243 37.037 5.60 0.00 0.00 1.73
2491 3644 7.607250 AGAGTTCGAGTTCTGAAATGAATAGT 58.393 34.615 0.00 0.00 0.00 2.12
2492 3645 8.740906 AGAGTTCGAGTTCTGAAATGAATAGTA 58.259 33.333 0.00 0.00 0.00 1.82
2493 3646 9.355215 GAGTTCGAGTTCTGAAATGAATAGTAA 57.645 33.333 0.00 0.00 0.00 2.24
2504 3657 8.347004 TGAAATGAATAGTAACATGAAGCCAA 57.653 30.769 0.00 0.00 0.00 4.52
2516 3669 4.102996 ACATGAAGCCAACCAAGGAAAATT 59.897 37.500 0.00 0.00 0.00 1.82
2639 3805 2.295349 ACATTTTGGCTGAAGAGTGCAG 59.705 45.455 0.00 0.00 36.47 4.41
2659 3825 4.633126 GCAGAGAATGATAGCACAAGAACA 59.367 41.667 0.00 0.00 0.00 3.18
2660 3826 5.296283 GCAGAGAATGATAGCACAAGAACAT 59.704 40.000 0.00 0.00 0.00 2.71
2662 3828 7.627939 GCAGAGAATGATAGCACAAGAACATTT 60.628 37.037 0.00 0.00 0.00 2.32
2663 3829 8.886719 CAGAGAATGATAGCACAAGAACATTTA 58.113 33.333 0.00 0.00 0.00 1.40
2664 3830 9.107177 AGAGAATGATAGCACAAGAACATTTAG 57.893 33.333 0.00 0.00 0.00 1.85
2665 3831 7.701445 AGAATGATAGCACAAGAACATTTAGC 58.299 34.615 0.00 0.00 0.00 3.09
2666 3832 7.337689 AGAATGATAGCACAAGAACATTTAGCA 59.662 33.333 0.00 0.00 0.00 3.49
2667 3833 6.182039 TGATAGCACAAGAACATTTAGCAC 57.818 37.500 0.00 0.00 0.00 4.40
2697 3863 7.227314 TGAGATACAGTGGATGCAATTCATAAC 59.773 37.037 0.00 0.00 31.90 1.89
2756 3922 7.574592 GCAAGTCAGCTAAATGTCTTCAAGAAT 60.575 37.037 0.00 0.00 0.00 2.40
2824 3990 2.988493 CCACATGGTTTTTGCATCTTCG 59.012 45.455 0.00 0.00 0.00 3.79
2827 3993 3.244976 CATGGTTTTTGCATCTTCGGTC 58.755 45.455 0.00 0.00 0.00 4.79
2891 4057 6.086765 GCACGAAAACATCAAAGTAGTCAATG 59.913 38.462 0.00 0.00 0.00 2.82
2900 4066 2.770164 AGTAGTCAATGTCCTGTGCC 57.230 50.000 0.00 0.00 0.00 5.01
2901 4067 1.279271 AGTAGTCAATGTCCTGTGCCC 59.721 52.381 0.00 0.00 0.00 5.36
2902 4068 1.003118 GTAGTCAATGTCCTGTGCCCA 59.997 52.381 0.00 0.00 0.00 5.36
2903 4069 0.250901 AGTCAATGTCCTGTGCCCAC 60.251 55.000 0.00 0.00 0.00 4.61
2904 4070 1.074775 TCAATGTCCTGTGCCCACC 59.925 57.895 0.00 0.00 0.00 4.61
2905 4071 1.978617 CAATGTCCTGTGCCCACCC 60.979 63.158 0.00 0.00 0.00 4.61
2906 4072 2.162906 AATGTCCTGTGCCCACCCT 61.163 57.895 0.00 0.00 0.00 4.34
2907 4073 2.142292 AATGTCCTGTGCCCACCCTC 62.142 60.000 0.00 0.00 0.00 4.30
2908 4074 3.249189 GTCCTGTGCCCACCCTCA 61.249 66.667 0.00 0.00 0.00 3.86
2909 4075 2.449518 TCCTGTGCCCACCCTCAA 60.450 61.111 0.00 0.00 0.00 3.02
2910 4076 2.081787 TCCTGTGCCCACCCTCAAA 61.082 57.895 0.00 0.00 0.00 2.69
2911 4077 1.077265 CCTGTGCCCACCCTCAAAT 59.923 57.895 0.00 0.00 0.00 2.32
2912 4078 1.252904 CCTGTGCCCACCCTCAAATG 61.253 60.000 0.00 0.00 0.00 2.32
2913 4079 1.880819 CTGTGCCCACCCTCAAATGC 61.881 60.000 0.00 0.00 0.00 3.56
2914 4080 2.283821 TGCCCACCCTCAAATGCC 60.284 61.111 0.00 0.00 0.00 4.40
2915 4081 3.076916 GCCCACCCTCAAATGCCC 61.077 66.667 0.00 0.00 0.00 5.36
2916 4082 2.364186 CCCACCCTCAAATGCCCC 60.364 66.667 0.00 0.00 0.00 5.80
2917 4083 2.364186 CCACCCTCAAATGCCCCC 60.364 66.667 0.00 0.00 0.00 5.40
2931 4097 4.186911 CCCCCTCCCCAAATCAGA 57.813 61.111 0.00 0.00 0.00 3.27
2932 4098 2.408920 CCCCCTCCCCAAATCAGAA 58.591 57.895 0.00 0.00 0.00 3.02
2933 4099 0.936691 CCCCCTCCCCAAATCAGAAT 59.063 55.000 0.00 0.00 0.00 2.40
2934 4100 1.412074 CCCCCTCCCCAAATCAGAATG 60.412 57.143 0.00 0.00 37.54 2.67
2992 4686 2.884639 CCGTCCTTGTCCAAGTTTGATT 59.115 45.455 6.31 0.00 36.72 2.57
3036 4730 6.149474 CAGATCAAACGACCCTTTTGAGTTAT 59.851 38.462 0.00 0.00 44.17 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.343758 GTCAGCCTGCGGTCAAGA 59.656 61.111 0.00 0.00 0.00 3.02
15 16 0.179108 CTACGTAAGGGTCAGCCTGC 60.179 60.000 0.00 0.00 46.39 4.85
29 30 1.402456 CGCTTTGCTACCACTCTACGT 60.402 52.381 0.00 0.00 0.00 3.57
30 31 1.135489 TCGCTTTGCTACCACTCTACG 60.135 52.381 0.00 0.00 0.00 3.51
31 32 2.649331 TCGCTTTGCTACCACTCTAC 57.351 50.000 0.00 0.00 0.00 2.59
32 33 2.223502 CGATCGCTTTGCTACCACTCTA 60.224 50.000 0.26 0.00 0.00 2.43
33 34 1.469940 CGATCGCTTTGCTACCACTCT 60.470 52.381 0.26 0.00 0.00 3.24
97 109 5.418524 TGCTGTAGTATTGGTTCGGTAAGTA 59.581 40.000 0.00 0.00 0.00 2.24
101 113 3.765511 AGTGCTGTAGTATTGGTTCGGTA 59.234 43.478 0.00 0.00 0.00 4.02
173 187 3.857854 CGCGTCATGCTGAGTGGC 61.858 66.667 0.00 0.00 43.27 5.01
174 188 1.485838 GATCGCGTCATGCTGAGTGG 61.486 60.000 5.77 0.00 43.27 4.00
194 208 4.745125 AGTATATGTACATGCGTGCTTCAC 59.255 41.667 18.81 0.00 33.09 3.18
250 264 8.507249 GTCTGTTTATTTGACAGCAAAGTAGAT 58.493 33.333 0.00 0.00 46.27 1.98
275 302 1.403249 GGTCCATGTACGTACGCTTGT 60.403 52.381 20.18 0.00 0.00 3.16
290 318 2.434185 GAGCGCGTGATTGGTCCA 60.434 61.111 8.43 0.00 0.00 4.02
291 319 2.434185 TGAGCGCGTGATTGGTCC 60.434 61.111 8.43 0.00 0.00 4.46
372 407 9.667107 ATGATTATTACGGTGGTGGATTATTAG 57.333 33.333 0.00 0.00 0.00 1.73
373 408 9.443323 CATGATTATTACGGTGGTGGATTATTA 57.557 33.333 0.00 0.00 0.00 0.98
374 409 7.393234 CCATGATTATTACGGTGGTGGATTATT 59.607 37.037 0.00 0.00 0.00 1.40
375 410 6.884295 CCATGATTATTACGGTGGTGGATTAT 59.116 38.462 0.00 0.00 0.00 1.28
402 437 2.475466 GGGTCATCGGCACAGCATG 61.475 63.158 0.00 0.00 46.00 4.06
406 441 2.821366 GCAGGGTCATCGGCACAG 60.821 66.667 0.00 0.00 0.00 3.66
408 443 3.365291 TACGCAGGGTCATCGGCAC 62.365 63.158 0.00 0.00 0.00 5.01
412 447 2.954868 GCGTACGCAGGGTCATCG 60.955 66.667 33.90 0.00 41.49 3.84
440 475 0.173708 CTGGTCACTTCTACGGAGCC 59.826 60.000 0.00 0.00 0.00 4.70
441 476 1.133407 CTCTGGTCACTTCTACGGAGC 59.867 57.143 0.00 0.00 0.00 4.70
452 487 4.462508 TTGTCATCTGATCTCTGGTCAC 57.537 45.455 0.00 0.00 0.00 3.67
541 590 1.901464 CTTTGGGGGTTGGTGGACG 60.901 63.158 0.00 0.00 0.00 4.79
567 616 2.863153 GTGCGTGCTTAGTGGCAG 59.137 61.111 0.00 0.00 43.25 4.85
568 617 3.041351 CGTGCGTGCTTAGTGGCA 61.041 61.111 0.00 0.00 40.15 4.92
583 632 2.186903 CATTAGCGACCTGGGCGT 59.813 61.111 24.88 12.82 35.00 5.68
665 714 0.824109 TCTGGGCCACACGATTAGAG 59.176 55.000 0.00 0.00 0.00 2.43
707 756 2.998316 CTGGGACTGGAGGAATTCTC 57.002 55.000 5.23 1.17 41.71 2.87
718 767 1.185618 TCGACAGAACCCTGGGACTG 61.186 60.000 28.47 28.47 44.60 3.51
719 768 0.900647 CTCGACAGAACCCTGGGACT 60.901 60.000 22.23 15.09 44.60 3.85
720 769 1.592223 CTCGACAGAACCCTGGGAC 59.408 63.158 22.23 12.93 44.60 4.46
722 771 2.266055 GCTCGACAGAACCCTGGG 59.734 66.667 12.28 12.28 44.60 4.45
723 772 1.079543 CAGCTCGACAGAACCCTGG 60.080 63.158 0.00 0.00 44.60 4.45
724 773 0.534412 ATCAGCTCGACAGAACCCTG 59.466 55.000 0.00 0.00 45.76 4.45
725 774 0.534412 CATCAGCTCGACAGAACCCT 59.466 55.000 0.00 0.00 0.00 4.34
726 775 0.460987 CCATCAGCTCGACAGAACCC 60.461 60.000 0.00 0.00 0.00 4.11
727 776 0.532573 TCCATCAGCTCGACAGAACC 59.467 55.000 0.00 0.00 0.00 3.62
728 777 1.996191 GTTCCATCAGCTCGACAGAAC 59.004 52.381 11.08 11.08 33.94 3.01
729 778 1.066858 GGTTCCATCAGCTCGACAGAA 60.067 52.381 0.00 0.00 0.00 3.02
736 791 0.820871 ACGAGAGGTTCCATCAGCTC 59.179 55.000 0.00 0.00 40.94 4.09
755 810 0.606604 GTTGACTCTTGTAGCCGGGA 59.393 55.000 2.18 0.00 0.00 5.14
759 814 1.443802 GCCAGTTGACTCTTGTAGCC 58.556 55.000 0.00 0.00 0.00 3.93
760 815 1.071605 CGCCAGTTGACTCTTGTAGC 58.928 55.000 0.00 0.00 0.00 3.58
761 816 1.071605 GCGCCAGTTGACTCTTGTAG 58.928 55.000 0.00 0.00 0.00 2.74
762 817 0.320421 GGCGCCAGTTGACTCTTGTA 60.320 55.000 24.80 0.00 0.00 2.41
763 818 1.598130 GGCGCCAGTTGACTCTTGT 60.598 57.895 24.80 0.00 0.00 3.16
766 822 1.078848 GATGGCGCCAGTTGACTCT 60.079 57.895 35.36 15.73 0.00 3.24
960 1030 4.767255 AGCACCGCACCTGCTAGC 62.767 66.667 8.10 8.10 43.37 3.42
988 1082 0.179936 GCCTCCATCTCTCAACCAGG 59.820 60.000 0.00 0.00 0.00 4.45
989 1083 0.179089 CGCCTCCATCTCTCAACCAG 60.179 60.000 0.00 0.00 0.00 4.00
1194 1290 6.748333 AAGCAAGTATACGTCAGTACTACA 57.252 37.500 0.00 0.00 35.39 2.74
1195 1291 7.470900 AGAAAGCAAGTATACGTCAGTACTAC 58.529 38.462 0.00 0.00 35.39 2.73
1196 1292 7.621428 AGAAAGCAAGTATACGTCAGTACTA 57.379 36.000 0.00 0.00 35.39 1.82
1197 1293 6.512342 AGAAAGCAAGTATACGTCAGTACT 57.488 37.500 0.00 0.00 35.39 2.73
1198 1294 8.127327 TCATAGAAAGCAAGTATACGTCAGTAC 58.873 37.037 0.00 0.00 35.39 2.73
1203 1299 7.863375 ACTGATCATAGAAAGCAAGTATACGTC 59.137 37.037 0.00 0.00 0.00 4.34
1204 1300 7.717568 ACTGATCATAGAAAGCAAGTATACGT 58.282 34.615 0.00 0.00 0.00 3.57
1209 1305 7.044181 CCAAGACTGATCATAGAAAGCAAGTA 58.956 38.462 0.00 0.00 0.00 2.24
1210 1306 5.879223 CCAAGACTGATCATAGAAAGCAAGT 59.121 40.000 0.00 0.00 0.00 3.16
1211 1307 5.879223 ACCAAGACTGATCATAGAAAGCAAG 59.121 40.000 0.00 0.00 0.00 4.01
1212 1308 5.809001 ACCAAGACTGATCATAGAAAGCAA 58.191 37.500 0.00 0.00 0.00 3.91
1221 1326 6.240894 TGCTCTAAAAACCAAGACTGATCAT 58.759 36.000 0.00 0.00 0.00 2.45
1222 1327 5.620206 TGCTCTAAAAACCAAGACTGATCA 58.380 37.500 0.00 0.00 0.00 2.92
1224 1329 7.530426 AAATGCTCTAAAAACCAAGACTGAT 57.470 32.000 0.00 0.00 0.00 2.90
1251 1356 5.587844 TGCTTTAAAAGGCTGATTGCAAAAA 59.412 32.000 1.71 0.00 45.15 1.94
1252 1357 5.007528 GTGCTTTAAAAGGCTGATTGCAAAA 59.992 36.000 1.71 0.00 45.15 2.44
1255 1360 3.321682 AGTGCTTTAAAAGGCTGATTGCA 59.678 39.130 2.01 0.00 45.15 4.08
1256 1361 3.917988 AGTGCTTTAAAAGGCTGATTGC 58.082 40.909 2.01 0.00 41.94 3.56
1257 1362 6.366061 GGTAAAGTGCTTTAAAAGGCTGATTG 59.634 38.462 6.02 0.00 36.86 2.67
1261 1366 5.453567 AGGTAAAGTGCTTTAAAAGGCTG 57.546 39.130 6.02 0.00 36.86 4.85
1262 1367 5.739070 GCAAGGTAAAGTGCTTTAAAAGGCT 60.739 40.000 6.02 0.00 36.86 4.58
1273 1395 5.072040 ACAAATATGGCAAGGTAAAGTGC 57.928 39.130 0.00 0.00 40.14 4.40
1295 1419 4.948608 TTTTTGCAGTTCGTTAGTGTGA 57.051 36.364 0.00 0.00 0.00 3.58
1326 1455 0.578211 CTTGACGTACGTTGCGGTTT 59.422 50.000 23.70 0.00 0.00 3.27
1330 1459 2.356386 AAAACTTGACGTACGTTGCG 57.644 45.000 23.70 15.17 0.00 4.85
1336 1465 6.022821 TGTTGTTGCTTAAAACTTGACGTAC 58.977 36.000 0.00 0.00 0.00 3.67
1337 1466 6.179504 TGTTGTTGCTTAAAACTTGACGTA 57.820 33.333 0.00 0.00 0.00 3.57
1338 1467 5.049398 TGTTGTTGCTTAAAACTTGACGT 57.951 34.783 0.00 0.00 0.00 4.34
1339 1468 6.382821 TTTGTTGTTGCTTAAAACTTGACG 57.617 33.333 0.00 0.00 0.00 4.35
1340 1469 9.049974 CAATTTTGTTGTTGCTTAAAACTTGAC 57.950 29.630 0.00 0.00 0.00 3.18
1344 1473 8.227119 GTGACAATTTTGTTGTTGCTTAAAACT 58.773 29.630 0.00 0.00 42.43 2.66
1346 1475 8.226448 CAGTGACAATTTTGTTGTTGCTTAAAA 58.774 29.630 0.00 0.00 42.43 1.52
1351 1480 4.819769 ACAGTGACAATTTTGTTGTTGCT 58.180 34.783 0.00 0.00 42.43 3.91
1352 1481 5.529014 AACAGTGACAATTTTGTTGTTGC 57.471 34.783 9.87 0.00 42.43 4.17
1353 1482 7.954786 GGTTAAACAGTGACAATTTTGTTGTTG 59.045 33.333 10.92 6.61 42.43 3.33
1363 1492 5.732247 GCAACTTCGGTTAAACAGTGACAAT 60.732 40.000 0.00 0.00 36.26 2.71
1368 1497 3.963383 AGCAACTTCGGTTAAACAGTG 57.037 42.857 0.00 0.00 36.26 3.66
1376 1505 5.063880 ACTGAATCTTTAGCAACTTCGGTT 58.936 37.500 0.00 0.00 38.94 4.44
1379 1508 7.797819 AGTTAACTGAATCTTTAGCAACTTCG 58.202 34.615 7.48 0.00 0.00 3.79
1383 1512 8.722394 AGCTTAGTTAACTGAATCTTTAGCAAC 58.278 33.333 18.56 0.00 0.00 4.17
1389 1518 9.646427 CAGAGTAGCTTAGTTAACTGAATCTTT 57.354 33.333 18.56 0.00 0.00 2.52
1390 1519 7.762159 GCAGAGTAGCTTAGTTAACTGAATCTT 59.238 37.037 18.56 1.99 0.00 2.40
1391 1520 7.262048 GCAGAGTAGCTTAGTTAACTGAATCT 58.738 38.462 18.56 11.62 0.00 2.40
1392 1521 6.197468 CGCAGAGTAGCTTAGTTAACTGAATC 59.803 42.308 18.56 4.98 0.00 2.52
1394 1523 5.399858 CGCAGAGTAGCTTAGTTAACTGAA 58.600 41.667 18.56 7.67 0.00 3.02
1408 1537 0.952280 TATTCCGAGGCGCAGAGTAG 59.048 55.000 10.83 0.00 0.00 2.57
1410 1539 0.753262 ATTATTCCGAGGCGCAGAGT 59.247 50.000 10.83 0.00 0.00 3.24
1412 1541 3.678056 AATATTATTCCGAGGCGCAGA 57.322 42.857 10.83 0.00 0.00 4.26
1413 1542 4.929808 AGTAAATATTATTCCGAGGCGCAG 59.070 41.667 10.83 0.00 0.00 5.18
1414 1543 4.890088 AGTAAATATTATTCCGAGGCGCA 58.110 39.130 10.83 0.00 0.00 6.09
1415 1544 4.329256 GGAGTAAATATTATTCCGAGGCGC 59.671 45.833 0.00 0.00 0.00 6.53
1416 1545 4.868734 GGGAGTAAATATTATTCCGAGGCG 59.131 45.833 5.82 0.00 0.00 5.52
1417 1546 5.183969 GGGGAGTAAATATTATTCCGAGGC 58.816 45.833 5.82 0.00 0.00 4.70
1418 1547 5.742063 GGGGGAGTAAATATTATTCCGAGG 58.258 45.833 5.82 0.00 0.00 4.63
1439 1568 5.181433 GCGCTCTTATATTTCTTTTAGGGGG 59.819 44.000 0.00 0.00 0.00 5.40
1440 1569 5.181433 GGCGCTCTTATATTTCTTTTAGGGG 59.819 44.000 7.64 0.00 0.00 4.79
1441 1570 5.998363 AGGCGCTCTTATATTTCTTTTAGGG 59.002 40.000 7.64 0.00 0.00 3.53
1442 1571 6.706270 TGAGGCGCTCTTATATTTCTTTTAGG 59.294 38.462 7.64 0.00 0.00 2.69
1443 1572 7.715265 TGAGGCGCTCTTATATTTCTTTTAG 57.285 36.000 7.64 0.00 0.00 1.85
1444 1573 8.500753 TTTGAGGCGCTCTTATATTTCTTTTA 57.499 30.769 7.64 0.00 0.00 1.52
1445 1574 7.391148 TTTGAGGCGCTCTTATATTTCTTTT 57.609 32.000 7.64 0.00 0.00 2.27
1446 1575 7.391148 TTTTGAGGCGCTCTTATATTTCTTT 57.609 32.000 7.64 0.00 0.00 2.52
1447 1576 7.573968 ATTTTGAGGCGCTCTTATATTTCTT 57.426 32.000 7.64 0.00 0.00 2.52
1448 1577 8.677148 TTATTTTGAGGCGCTCTTATATTTCT 57.323 30.769 7.64 0.00 0.00 2.52
1455 1584 9.555727 AGTAAATATTATTTTGAGGCGCTCTTA 57.444 29.630 7.64 0.00 0.00 2.10
1456 1585 8.451908 AGTAAATATTATTTTGAGGCGCTCTT 57.548 30.769 7.64 0.00 0.00 2.85
1457 1586 8.989980 GTAGTAAATATTATTTTGAGGCGCTCT 58.010 33.333 7.64 1.93 0.00 4.09
1458 1587 8.228464 GGTAGTAAATATTATTTTGAGGCGCTC 58.772 37.037 7.64 3.37 0.00 5.03
1459 1588 7.174426 GGGTAGTAAATATTATTTTGAGGCGCT 59.826 37.037 7.64 0.00 0.00 5.92
1460 1589 7.174426 AGGGTAGTAAATATTATTTTGAGGCGC 59.826 37.037 0.00 0.00 0.00 6.53
1461 1590 8.617290 AGGGTAGTAAATATTATTTTGAGGCG 57.383 34.615 6.95 0.00 0.00 5.52
1462 1591 8.718734 CGAGGGTAGTAAATATTATTTTGAGGC 58.281 37.037 6.95 0.00 0.00 4.70
1463 1592 9.774413 ACGAGGGTAGTAAATATTATTTTGAGG 57.226 33.333 6.95 0.00 0.00 3.86
1469 1598 8.239998 GCGTCTACGAGGGTAGTAAATATTATT 58.760 37.037 6.71 0.00 45.22 1.40
1470 1599 7.609532 AGCGTCTACGAGGGTAGTAAATATTAT 59.390 37.037 6.71 0.00 45.22 1.28
1471 1600 6.936900 AGCGTCTACGAGGGTAGTAAATATTA 59.063 38.462 6.71 0.00 45.22 0.98
1472 1601 5.767168 AGCGTCTACGAGGGTAGTAAATATT 59.233 40.000 6.71 0.00 45.22 1.28
1473 1602 5.312079 AGCGTCTACGAGGGTAGTAAATAT 58.688 41.667 6.71 0.00 45.22 1.28
1474 1603 4.708177 AGCGTCTACGAGGGTAGTAAATA 58.292 43.478 6.71 0.00 45.22 1.40
1475 1604 3.549794 AGCGTCTACGAGGGTAGTAAAT 58.450 45.455 6.71 0.00 45.22 1.40
1476 1605 2.939103 GAGCGTCTACGAGGGTAGTAAA 59.061 50.000 6.71 0.00 45.22 2.01
1477 1606 2.169352 AGAGCGTCTACGAGGGTAGTAA 59.831 50.000 6.71 0.00 45.22 2.24
1478 1607 1.759445 AGAGCGTCTACGAGGGTAGTA 59.241 52.381 6.71 0.00 45.22 1.82
1479 1608 0.540923 AGAGCGTCTACGAGGGTAGT 59.459 55.000 6.71 0.00 45.22 2.73
1480 1609 1.666054 AAGAGCGTCTACGAGGGTAG 58.334 55.000 6.71 0.00 46.16 3.18
1481 1610 2.988010 TAAGAGCGTCTACGAGGGTA 57.012 50.000 6.71 0.00 43.02 3.69
1482 1611 2.345124 ATAAGAGCGTCTACGAGGGT 57.655 50.000 6.71 0.00 43.02 4.34
1483 1612 5.181622 AGAAATATAAGAGCGTCTACGAGGG 59.818 44.000 6.71 0.00 43.02 4.30
1484 1613 6.243811 AGAAATATAAGAGCGTCTACGAGG 57.756 41.667 6.71 0.00 43.02 4.63
1485 1614 9.105206 GTAAAGAAATATAAGAGCGTCTACGAG 57.895 37.037 6.71 0.00 43.02 4.18
1486 1615 8.615211 TGTAAAGAAATATAAGAGCGTCTACGA 58.385 33.333 6.71 0.00 43.02 3.43
1487 1616 8.778141 TGTAAAGAAATATAAGAGCGTCTACG 57.222 34.615 0.00 0.00 43.27 3.51
1488 1617 9.947669 TCTGTAAAGAAATATAAGAGCGTCTAC 57.052 33.333 0.00 0.00 0.00 2.59
1490 1619 8.138712 CCTCTGTAAAGAAATATAAGAGCGTCT 58.861 37.037 0.00 0.00 0.00 4.18
1491 1620 7.382759 CCCTCTGTAAAGAAATATAAGAGCGTC 59.617 40.741 0.00 0.00 0.00 5.19
1492 1621 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
1493 1622 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
1494 1623 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
1501 1630 9.986157 TCTAAGTACTCCCTCTGTAAAGAAATA 57.014 33.333 0.00 0.00 0.00 1.40
1502 1631 8.896722 TCTAAGTACTCCCTCTGTAAAGAAAT 57.103 34.615 0.00 0.00 0.00 2.17
1503 1632 8.896722 ATCTAAGTACTCCCTCTGTAAAGAAA 57.103 34.615 0.00 0.00 0.00 2.52
1504 1633 9.629878 CTATCTAAGTACTCCCTCTGTAAAGAA 57.370 37.037 0.00 0.00 0.00 2.52
1505 1634 9.000978 TCTATCTAAGTACTCCCTCTGTAAAGA 57.999 37.037 0.00 0.00 0.00 2.52
1506 1635 9.280174 CTCTATCTAAGTACTCCCTCTGTAAAG 57.720 40.741 0.00 0.00 0.00 1.85
1507 1636 9.000978 TCTCTATCTAAGTACTCCCTCTGTAAA 57.999 37.037 0.00 0.00 0.00 2.01
1508 1637 8.564364 TCTCTATCTAAGTACTCCCTCTGTAA 57.436 38.462 0.00 0.00 0.00 2.41
1509 1638 8.011883 TCTCTCTATCTAAGTACTCCCTCTGTA 58.988 40.741 0.00 0.00 0.00 2.74
1510 1639 6.847567 TCTCTCTATCTAAGTACTCCCTCTGT 59.152 42.308 0.00 0.00 0.00 3.41
1511 1640 7.016268 ACTCTCTCTATCTAAGTACTCCCTCTG 59.984 44.444 0.00 0.00 0.00 3.35
1512 1641 7.080353 ACTCTCTCTATCTAAGTACTCCCTCT 58.920 42.308 0.00 0.00 0.00 3.69
1513 1642 7.312415 ACTCTCTCTATCTAAGTACTCCCTC 57.688 44.000 0.00 0.00 0.00 4.30
1514 1643 8.984112 ATACTCTCTCTATCTAAGTACTCCCT 57.016 38.462 0.00 0.00 0.00 4.20
1525 1654 8.945193 GGTCCCTCATATATACTCTCTCTATCT 58.055 40.741 0.00 0.00 0.00 1.98
1526 1655 8.945193 AGGTCCCTCATATATACTCTCTCTATC 58.055 40.741 0.00 0.00 0.00 2.08
1527 1656 8.885900 AGGTCCCTCATATATACTCTCTCTAT 57.114 38.462 0.00 0.00 0.00 1.98
1528 1657 7.907280 TGAGGTCCCTCATATATACTCTCTCTA 59.093 40.741 12.01 0.00 46.80 2.43
1529 1658 6.738086 TGAGGTCCCTCATATATACTCTCTCT 59.262 42.308 12.01 0.00 46.80 3.10
1530 1659 6.964464 TGAGGTCCCTCATATATACTCTCTC 58.036 44.000 12.01 0.00 46.80 3.20
1531 1660 6.979018 TGAGGTCCCTCATATATACTCTCT 57.021 41.667 12.01 0.00 46.80 3.10
1544 1673 2.658807 AAAAGGTTGTGAGGTCCCTC 57.341 50.000 6.38 6.38 43.01 4.30
1545 1674 2.514160 AGAAAAAGGTTGTGAGGTCCCT 59.486 45.455 0.00 0.00 0.00 4.20
1546 1675 2.945456 AGAAAAAGGTTGTGAGGTCCC 58.055 47.619 0.00 0.00 0.00 4.46
1547 1676 4.036852 CAGAAGAAAAAGGTTGTGAGGTCC 59.963 45.833 0.00 0.00 0.00 4.46
1548 1677 4.640647 ACAGAAGAAAAAGGTTGTGAGGTC 59.359 41.667 0.00 0.00 0.00 3.85
1549 1678 4.600062 ACAGAAGAAAAAGGTTGTGAGGT 58.400 39.130 0.00 0.00 0.00 3.85
1550 1679 5.125417 TCAACAGAAGAAAAAGGTTGTGAGG 59.875 40.000 0.00 0.00 39.71 3.86
1551 1680 6.194796 TCAACAGAAGAAAAAGGTTGTGAG 57.805 37.500 0.00 0.00 39.71 3.51
1552 1681 6.582677 TTCAACAGAAGAAAAAGGTTGTGA 57.417 33.333 0.00 0.00 39.71 3.58
1553 1682 7.650834 TTTTCAACAGAAGAAAAAGGTTGTG 57.349 32.000 0.00 0.00 40.76 3.33
1560 1689 9.927668 AAGATGAGTTTTTCAACAGAAGAAAAA 57.072 25.926 9.10 9.10 46.69 1.94
1561 1690 9.927668 AAAGATGAGTTTTTCAACAGAAGAAAA 57.072 25.926 0.00 0.00 41.66 2.29
1562 1691 9.927668 AAAAGATGAGTTTTTCAACAGAAGAAA 57.072 25.926 0.00 0.00 39.77 2.52
1563 1692 9.927668 AAAAAGATGAGTTTTTCAACAGAAGAA 57.072 25.926 0.00 0.00 39.77 2.52
1589 1718 9.829507 ATGAGTTTTTCAACATACCATCAAAAA 57.170 25.926 0.00 0.00 39.77 1.94
1590 1719 9.474920 GATGAGTTTTTCAACATACCATCAAAA 57.525 29.630 0.00 0.00 39.77 2.44
1591 1720 8.859090 AGATGAGTTTTTCAACATACCATCAAA 58.141 29.630 0.00 0.00 39.77 2.69
1592 1721 8.408043 AGATGAGTTTTTCAACATACCATCAA 57.592 30.769 0.00 0.00 39.77 2.57
1593 1722 8.408043 AAGATGAGTTTTTCAACATACCATCA 57.592 30.769 0.00 0.00 39.77 3.07
1621 1750 9.696572 TCTAGTTTAGTTCCTGATGTGTACTAT 57.303 33.333 0.00 0.00 0.00 2.12
1622 1751 8.954350 GTCTAGTTTAGTTCCTGATGTGTACTA 58.046 37.037 0.00 0.00 0.00 1.82
1623 1752 7.450634 TGTCTAGTTTAGTTCCTGATGTGTACT 59.549 37.037 0.00 0.00 0.00 2.73
1624 1753 7.541437 GTGTCTAGTTTAGTTCCTGATGTGTAC 59.459 40.741 0.00 0.00 0.00 2.90
1625 1754 7.450634 AGTGTCTAGTTTAGTTCCTGATGTGTA 59.549 37.037 0.00 0.00 0.00 2.90
1626 1755 6.267928 AGTGTCTAGTTTAGTTCCTGATGTGT 59.732 38.462 0.00 0.00 0.00 3.72
1627 1756 6.587990 CAGTGTCTAGTTTAGTTCCTGATGTG 59.412 42.308 0.00 0.00 0.00 3.21
1628 1757 6.493802 TCAGTGTCTAGTTTAGTTCCTGATGT 59.506 38.462 0.00 0.00 0.00 3.06
1629 1758 6.925211 TCAGTGTCTAGTTTAGTTCCTGATG 58.075 40.000 0.00 0.00 0.00 3.07
1630 1759 6.350612 GCTCAGTGTCTAGTTTAGTTCCTGAT 60.351 42.308 0.00 0.00 0.00 2.90
1631 1760 5.047943 GCTCAGTGTCTAGTTTAGTTCCTGA 60.048 44.000 0.00 0.00 0.00 3.86
1632 1761 5.164954 GCTCAGTGTCTAGTTTAGTTCCTG 58.835 45.833 0.00 0.00 0.00 3.86
1633 1762 4.833380 TGCTCAGTGTCTAGTTTAGTTCCT 59.167 41.667 0.00 0.00 0.00 3.36
1634 1763 4.924462 GTGCTCAGTGTCTAGTTTAGTTCC 59.076 45.833 0.00 0.00 0.00 3.62
1635 1764 5.631512 CAGTGCTCAGTGTCTAGTTTAGTTC 59.368 44.000 0.00 0.00 0.00 3.01
1636 1765 5.533482 CAGTGCTCAGTGTCTAGTTTAGTT 58.467 41.667 0.00 0.00 0.00 2.24
1637 1766 4.559704 GCAGTGCTCAGTGTCTAGTTTAGT 60.560 45.833 8.18 0.00 34.32 2.24
1638 1767 3.923461 GCAGTGCTCAGTGTCTAGTTTAG 59.077 47.826 8.18 0.00 34.32 1.85
1639 1768 3.320826 TGCAGTGCTCAGTGTCTAGTTTA 59.679 43.478 17.60 0.00 34.32 2.01
1640 1769 2.103094 TGCAGTGCTCAGTGTCTAGTTT 59.897 45.455 17.60 0.00 34.32 2.66
1641 1770 1.688735 TGCAGTGCTCAGTGTCTAGTT 59.311 47.619 17.60 0.00 34.32 2.24
1642 1771 1.000283 GTGCAGTGCTCAGTGTCTAGT 60.000 52.381 17.60 0.00 34.32 2.57
1643 1772 1.000171 TGTGCAGTGCTCAGTGTCTAG 60.000 52.381 17.60 0.00 34.32 2.43
1644 1773 1.039856 TGTGCAGTGCTCAGTGTCTA 58.960 50.000 17.60 0.00 34.32 2.59
1645 1774 0.395686 ATGTGCAGTGCTCAGTGTCT 59.604 50.000 22.83 5.34 35.55 3.41
1646 1775 1.233019 AATGTGCAGTGCTCAGTGTC 58.767 50.000 22.83 3.81 35.55 3.67
1647 1776 1.335810 CAAATGTGCAGTGCTCAGTGT 59.664 47.619 22.83 9.82 35.55 3.55
1648 1777 1.335810 ACAAATGTGCAGTGCTCAGTG 59.664 47.619 22.83 22.60 35.55 3.66
1649 1778 1.683943 ACAAATGTGCAGTGCTCAGT 58.316 45.000 22.83 18.59 35.55 3.41
1650 1779 2.095567 GGTACAAATGTGCAGTGCTCAG 60.096 50.000 22.83 13.20 35.55 3.35
1651 1780 1.879380 GGTACAAATGTGCAGTGCTCA 59.121 47.619 21.09 21.09 36.50 4.26
1652 1781 1.135972 CGGTACAAATGTGCAGTGCTC 60.136 52.381 17.60 13.76 32.02 4.26
1653 1782 0.874390 CGGTACAAATGTGCAGTGCT 59.126 50.000 17.60 0.00 32.02 4.40
1654 1783 0.871722 TCGGTACAAATGTGCAGTGC 59.128 50.000 8.58 8.58 32.02 4.40
1655 1784 2.289274 TGTTCGGTACAAATGTGCAGTG 59.711 45.455 4.09 0.00 32.64 3.66
1656 1785 2.289547 GTGTTCGGTACAAATGTGCAGT 59.710 45.455 4.09 0.00 38.80 4.40
1657 1786 2.350388 GGTGTTCGGTACAAATGTGCAG 60.350 50.000 4.09 0.00 38.80 4.41
1658 1787 1.604755 GGTGTTCGGTACAAATGTGCA 59.395 47.619 4.09 0.00 38.80 4.57
1659 1788 1.068816 GGGTGTTCGGTACAAATGTGC 60.069 52.381 0.00 0.00 38.80 4.57
1660 1789 2.225491 CAGGGTGTTCGGTACAAATGTG 59.775 50.000 0.00 0.00 38.80 3.21
1661 1790 2.500229 CAGGGTGTTCGGTACAAATGT 58.500 47.619 0.00 0.00 38.80 2.71
1662 1791 1.810151 CCAGGGTGTTCGGTACAAATG 59.190 52.381 0.00 0.00 38.80 2.32
1663 1792 1.884928 GCCAGGGTGTTCGGTACAAAT 60.885 52.381 0.00 0.00 38.80 2.32
1664 1793 0.535553 GCCAGGGTGTTCGGTACAAA 60.536 55.000 0.00 0.00 38.80 2.83
1665 1794 1.071814 GCCAGGGTGTTCGGTACAA 59.928 57.895 0.00 0.00 38.80 2.41
1666 1795 1.823169 GAGCCAGGGTGTTCGGTACA 61.823 60.000 0.00 0.00 0.00 2.90
1667 1796 1.079336 GAGCCAGGGTGTTCGGTAC 60.079 63.158 0.00 0.00 0.00 3.34
1668 1797 1.229082 AGAGCCAGGGTGTTCGGTA 60.229 57.895 0.00 0.00 0.00 4.02
1669 1798 2.526873 AGAGCCAGGGTGTTCGGT 60.527 61.111 0.00 0.00 0.00 4.69
1670 1799 1.903877 ATGAGAGCCAGGGTGTTCGG 61.904 60.000 0.00 0.00 0.00 4.30
1671 1800 0.460987 GATGAGAGCCAGGGTGTTCG 60.461 60.000 0.00 0.00 0.00 3.95
1672 1801 0.908198 AGATGAGAGCCAGGGTGTTC 59.092 55.000 0.00 0.00 0.00 3.18
1673 1802 0.908198 GAGATGAGAGCCAGGGTGTT 59.092 55.000 0.00 0.00 0.00 3.32
1674 1803 0.252421 TGAGATGAGAGCCAGGGTGT 60.252 55.000 0.00 0.00 0.00 4.16
1675 1804 0.177604 GTGAGATGAGAGCCAGGGTG 59.822 60.000 0.00 0.00 0.00 4.61
1676 1805 1.326213 CGTGAGATGAGAGCCAGGGT 61.326 60.000 0.00 0.00 0.00 4.34
1677 1806 1.039785 TCGTGAGATGAGAGCCAGGG 61.040 60.000 0.00 0.00 33.31 4.45
1678 1807 0.385029 CTCGTGAGATGAGAGCCAGG 59.615 60.000 0.00 0.00 40.84 4.45
1679 1808 0.385029 CCTCGTGAGATGAGAGCCAG 59.615 60.000 0.00 0.00 40.84 4.85
1680 1809 1.039785 CCCTCGTGAGATGAGAGCCA 61.040 60.000 0.00 0.00 40.84 4.75
1681 1810 1.739049 CCCTCGTGAGATGAGAGCC 59.261 63.158 0.00 0.00 40.84 4.70
1682 1811 1.067250 GCCCTCGTGAGATGAGAGC 59.933 63.158 0.00 0.00 40.84 4.09
1683 1812 1.358402 CGCCCTCGTGAGATGAGAG 59.642 63.158 0.00 0.00 40.84 3.20
1684 1813 2.121538 CCGCCCTCGTGAGATGAGA 61.122 63.158 0.00 0.00 40.84 3.27
1685 1814 2.415010 CCGCCCTCGTGAGATGAG 59.585 66.667 0.00 0.00 40.84 2.90
1686 1815 3.838271 GCCGCCCTCGTGAGATGA 61.838 66.667 0.00 0.00 40.84 2.92
1687 1816 4.147449 TGCCGCCCTCGTGAGATG 62.147 66.667 0.00 0.00 40.84 2.90
1688 1817 4.148825 GTGCCGCCCTCGTGAGAT 62.149 66.667 0.00 0.00 40.84 2.75
1696 1825 3.204467 TAAAAGCCAGTGCCGCCCT 62.204 57.895 0.00 0.00 38.69 5.19
1697 1826 2.675075 TAAAAGCCAGTGCCGCCC 60.675 61.111 0.00 0.00 38.69 6.13
1698 1827 1.923227 GAGTAAAAGCCAGTGCCGCC 61.923 60.000 0.00 0.00 38.69 6.13
1699 1828 1.502190 GAGTAAAAGCCAGTGCCGC 59.498 57.895 0.00 0.00 38.69 6.53
1700 1829 0.605319 TGGAGTAAAAGCCAGTGCCG 60.605 55.000 0.00 0.00 38.69 5.69
1701 1830 1.541588 CTTGGAGTAAAAGCCAGTGCC 59.458 52.381 0.00 0.00 38.69 5.01
1702 1831 2.226674 GACTTGGAGTAAAAGCCAGTGC 59.773 50.000 0.00 0.00 35.23 4.40
1703 1832 3.251004 GTGACTTGGAGTAAAAGCCAGTG 59.749 47.826 0.00 0.00 35.23 3.66
1704 1833 3.118038 TGTGACTTGGAGTAAAAGCCAGT 60.118 43.478 0.00 0.00 35.23 4.00
1705 1834 3.476552 TGTGACTTGGAGTAAAAGCCAG 58.523 45.455 0.00 0.00 35.23 4.85
1706 1835 3.569194 TGTGACTTGGAGTAAAAGCCA 57.431 42.857 0.00 0.00 0.00 4.75
1707 1836 6.569179 TTTATGTGACTTGGAGTAAAAGCC 57.431 37.500 0.00 0.00 0.00 4.35
1712 1841 9.391006 GGTCAATATTTATGTGACTTGGAGTAA 57.609 33.333 4.85 0.00 41.17 2.24
1713 1842 7.709182 CGGTCAATATTTATGTGACTTGGAGTA 59.291 37.037 4.85 0.00 41.17 2.59
1714 1843 6.538742 CGGTCAATATTTATGTGACTTGGAGT 59.461 38.462 4.85 0.00 41.17 3.85
1715 1844 6.017934 CCGGTCAATATTTATGTGACTTGGAG 60.018 42.308 0.00 0.00 41.17 3.86
1716 1845 5.820423 CCGGTCAATATTTATGTGACTTGGA 59.180 40.000 0.00 0.00 41.17 3.53
1717 1846 5.820423 TCCGGTCAATATTTATGTGACTTGG 59.180 40.000 0.00 7.03 41.17 3.61
1718 1847 6.918892 TCCGGTCAATATTTATGTGACTTG 57.081 37.500 0.00 0.00 41.17 3.16
1719 1848 9.052759 GTTATCCGGTCAATATTTATGTGACTT 57.947 33.333 0.00 0.00 41.17 3.01
1720 1849 8.208224 TGTTATCCGGTCAATATTTATGTGACT 58.792 33.333 0.00 0.00 41.17 3.41
1721 1850 8.373048 TGTTATCCGGTCAATATTTATGTGAC 57.627 34.615 0.00 0.00 40.77 3.67
1728 1857 9.231297 CCAAGATATGTTATCCGGTCAATATTT 57.769 33.333 0.00 0.00 0.00 1.40
1729 1858 8.383175 ACCAAGATATGTTATCCGGTCAATATT 58.617 33.333 0.00 0.00 0.00 1.28
1730 1859 7.918076 ACCAAGATATGTTATCCGGTCAATAT 58.082 34.615 0.00 3.39 0.00 1.28
1731 1860 7.311092 ACCAAGATATGTTATCCGGTCAATA 57.689 36.000 0.00 0.00 0.00 1.90
1732 1861 6.187727 ACCAAGATATGTTATCCGGTCAAT 57.812 37.500 0.00 0.00 0.00 2.57
1733 1862 5.623956 ACCAAGATATGTTATCCGGTCAA 57.376 39.130 0.00 0.00 0.00 3.18
1734 1863 5.104693 ACAACCAAGATATGTTATCCGGTCA 60.105 40.000 0.00 0.00 0.00 4.02
1735 1864 5.365619 ACAACCAAGATATGTTATCCGGTC 58.634 41.667 0.00 0.00 0.00 4.79
1736 1865 5.367945 ACAACCAAGATATGTTATCCGGT 57.632 39.130 0.00 0.00 0.00 5.28
1737 1866 6.459573 CCAAACAACCAAGATATGTTATCCGG 60.460 42.308 0.00 0.00 36.33 5.14
1738 1867 6.317642 TCCAAACAACCAAGATATGTTATCCG 59.682 38.462 0.00 0.00 36.33 4.18
1739 1868 7.639113 TCCAAACAACCAAGATATGTTATCC 57.361 36.000 0.00 0.00 36.33 2.59
1740 1869 7.649306 GCATCCAAACAACCAAGATATGTTATC 59.351 37.037 0.00 0.00 36.33 1.75
1741 1870 7.342799 AGCATCCAAACAACCAAGATATGTTAT 59.657 33.333 0.00 0.00 36.33 1.89
1742 1871 6.663093 AGCATCCAAACAACCAAGATATGTTA 59.337 34.615 0.00 0.00 36.33 2.41
1743 1872 5.481473 AGCATCCAAACAACCAAGATATGTT 59.519 36.000 0.00 0.00 38.85 2.71
1744 1873 5.018809 AGCATCCAAACAACCAAGATATGT 58.981 37.500 0.00 0.00 0.00 2.29
1745 1874 5.345702 CAGCATCCAAACAACCAAGATATG 58.654 41.667 0.00 0.00 0.00 1.78
1746 1875 4.403432 CCAGCATCCAAACAACCAAGATAT 59.597 41.667 0.00 0.00 0.00 1.63
1747 1876 3.763360 CCAGCATCCAAACAACCAAGATA 59.237 43.478 0.00 0.00 0.00 1.98
1748 1877 2.564062 CCAGCATCCAAACAACCAAGAT 59.436 45.455 0.00 0.00 0.00 2.40
1749 1878 1.962807 CCAGCATCCAAACAACCAAGA 59.037 47.619 0.00 0.00 0.00 3.02
1750 1879 1.001181 CCCAGCATCCAAACAACCAAG 59.999 52.381 0.00 0.00 0.00 3.61
1751 1880 1.047002 CCCAGCATCCAAACAACCAA 58.953 50.000 0.00 0.00 0.00 3.67
1752 1881 0.105760 ACCCAGCATCCAAACAACCA 60.106 50.000 0.00 0.00 0.00 3.67
1753 1882 0.318120 CACCCAGCATCCAAACAACC 59.682 55.000 0.00 0.00 0.00 3.77
1754 1883 1.039856 ACACCCAGCATCCAAACAAC 58.960 50.000 0.00 0.00 0.00 3.32
1755 1884 1.039068 CACACCCAGCATCCAAACAA 58.961 50.000 0.00 0.00 0.00 2.83
2060 2195 2.357517 GGACGCCATGGATAGCCG 60.358 66.667 18.40 11.79 36.79 5.52
2091 2236 8.034058 ACAAATGATTAAGAAGAAGAAGACGG 57.966 34.615 0.00 0.00 0.00 4.79
2103 2248 9.177608 AGCAGCAAGTATAACAAATGATTAAGA 57.822 29.630 0.00 0.00 0.00 2.10
2105 2250 9.571810 CAAGCAGCAAGTATAACAAATGATTAA 57.428 29.630 0.00 0.00 0.00 1.40
2235 2409 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
2239 2413 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2241 2415 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2242 2416 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2243 2417 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2244 2418 1.152510 TCACACACACACACACACAC 58.847 50.000 0.00 0.00 0.00 3.82
2245 2419 1.533299 GTTCACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2246 2420 1.804151 AGTTCACACACACACACACAC 59.196 47.619 0.00 0.00 0.00 3.82
2247 2421 1.803555 CAGTTCACACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
2248 2422 1.804151 ACAGTTCACACACACACACAC 59.196 47.619 0.00 0.00 0.00 3.82
2249 2423 1.803555 CACAGTTCACACACACACACA 59.196 47.619 0.00 0.00 0.00 3.72
2250 2424 1.130373 CCACAGTTCACACACACACAC 59.870 52.381 0.00 0.00 0.00 3.82
2251 2425 1.447945 CCACAGTTCACACACACACA 58.552 50.000 0.00 0.00 0.00 3.72
2252 2426 0.098728 GCCACAGTTCACACACACAC 59.901 55.000 0.00 0.00 0.00 3.82
2253 2427 1.365368 CGCCACAGTTCACACACACA 61.365 55.000 0.00 0.00 0.00 3.72
2254 2428 1.351707 CGCCACAGTTCACACACAC 59.648 57.895 0.00 0.00 0.00 3.82
2255 2429 1.078778 ACGCCACAGTTCACACACA 60.079 52.632 0.00 0.00 0.00 3.72
2256 2430 1.351707 CACGCCACAGTTCACACAC 59.648 57.895 0.00 0.00 0.00 3.82
2257 2431 1.078778 ACACGCCACAGTTCACACA 60.079 52.632 0.00 0.00 0.00 3.72
2258 2432 1.351707 CACACGCCACAGTTCACAC 59.648 57.895 0.00 0.00 0.00 3.82
2259 2433 0.675208 AACACACGCCACAGTTCACA 60.675 50.000 0.00 0.00 0.00 3.58
2260 2434 0.248054 CAACACACGCCACAGTTCAC 60.248 55.000 0.00 0.00 0.00 3.18
2261 2435 1.987704 GCAACACACGCCACAGTTCA 61.988 55.000 0.00 0.00 0.00 3.18
2262 2436 1.298339 GCAACACACGCCACAGTTC 60.298 57.895 0.00 0.00 0.00 3.01
2263 2437 0.462937 TAGCAACACACGCCACAGTT 60.463 50.000 0.00 0.00 0.00 3.16
2264 2438 1.145156 TAGCAACACACGCCACAGT 59.855 52.632 0.00 0.00 0.00 3.55
2265 2439 1.157257 TGTAGCAACACACGCCACAG 61.157 55.000 0.00 0.00 0.00 3.66
2266 2440 0.744771 TTGTAGCAACACACGCCACA 60.745 50.000 0.00 0.00 34.61 4.17
2267 2441 0.378962 TTTGTAGCAACACACGCCAC 59.621 50.000 0.00 0.00 34.61 5.01
2268 2442 1.313772 ATTTGTAGCAACACACGCCA 58.686 45.000 0.00 0.00 34.61 5.69
2269 2443 2.415697 AATTTGTAGCAACACACGCC 57.584 45.000 0.00 0.00 34.61 5.68
2283 2459 8.737168 TTCTCATTACATCCTCCACTAATTTG 57.263 34.615 0.00 0.00 0.00 2.32
2290 2466 5.303971 CCTCATTCTCATTACATCCTCCAC 58.696 45.833 0.00 0.00 0.00 4.02
2301 2477 3.525199 ACTAACAGCCCCTCATTCTCATT 59.475 43.478 0.00 0.00 0.00 2.57
2315 2492 1.137282 GGCTACTCCTGGACTAACAGC 59.863 57.143 0.00 0.00 37.16 4.40
2327 2504 0.249398 ATTGACACACCGGCTACTCC 59.751 55.000 0.00 0.00 0.00 3.85
2328 2505 1.204941 AGATTGACACACCGGCTACTC 59.795 52.381 0.00 0.00 0.00 2.59
2335 2512 4.248859 AGAAATGAGAGATTGACACACCG 58.751 43.478 0.00 0.00 0.00 4.94
2337 2514 6.533367 GGAGTAGAAATGAGAGATTGACACAC 59.467 42.308 0.00 0.00 0.00 3.82
2344 2521 9.898152 CCTTTTTAGGAGTAGAAATGAGAGATT 57.102 33.333 0.00 0.00 0.00 2.40
2352 2529 5.492887 AGAGGGCCTTTTTAGGAGTAGAAAT 59.507 40.000 7.89 0.00 0.00 2.17
2360 2537 2.986728 AGAACAGAGGGCCTTTTTAGGA 59.013 45.455 7.89 0.00 0.00 2.94
2377 2554 6.417930 GCCAAATGTTCAGTTGAAACTAGAAC 59.582 38.462 20.04 20.04 41.72 3.01
2418 3571 9.734620 TGTTCTCTTTTGACATCACTTTATTTG 57.265 29.630 0.00 0.00 0.00 2.32
2422 3575 9.734620 CAAATGTTCTCTTTTGACATCACTTTA 57.265 29.630 0.00 0.00 39.49 1.85
2429 3582 5.796424 AGCCAAATGTTCTCTTTTGACAT 57.204 34.783 7.73 0.00 39.49 3.06
2461 3614 5.453567 TTTCAGAACTCGAACTCTCATGA 57.546 39.130 0.00 0.00 0.00 3.07
2472 3625 9.087424 TCATGTTACTATTCATTTCAGAACTCG 57.913 33.333 0.00 0.00 0.00 4.18
2490 3643 3.153919 TCCTTGGTTGGCTTCATGTTAC 58.846 45.455 0.00 0.00 0.00 2.50
2491 3644 3.517296 TCCTTGGTTGGCTTCATGTTA 57.483 42.857 0.00 0.00 0.00 2.41
2492 3645 2.380064 TCCTTGGTTGGCTTCATGTT 57.620 45.000 0.00 0.00 0.00 2.71
2493 3646 2.380064 TTCCTTGGTTGGCTTCATGT 57.620 45.000 0.00 0.00 0.00 3.21
2504 3657 8.749354 GTGTAAGATGGATAAATTTTCCTTGGT 58.251 33.333 15.75 6.69 34.17 3.67
2603 3769 9.234827 CAGCCAAAATGTTCTCATCCATATATA 57.765 33.333 0.00 0.00 32.56 0.86
2639 3805 7.854916 GCTAAATGTTCTTGTGCTATCATTCTC 59.145 37.037 0.00 0.00 0.00 2.87
2653 3819 4.883083 TCTCACTCGTGCTAAATGTTCTT 58.117 39.130 0.00 0.00 0.00 2.52
2659 3825 5.344066 CACTGTATCTCACTCGTGCTAAAT 58.656 41.667 0.00 0.00 0.00 1.40
2660 3826 4.380550 CCACTGTATCTCACTCGTGCTAAA 60.381 45.833 0.00 0.00 31.82 1.85
2662 3828 2.683362 CCACTGTATCTCACTCGTGCTA 59.317 50.000 0.00 0.00 31.82 3.49
2663 3829 1.474478 CCACTGTATCTCACTCGTGCT 59.526 52.381 0.00 0.00 31.82 4.40
2664 3830 1.472878 TCCACTGTATCTCACTCGTGC 59.527 52.381 0.00 0.00 31.82 5.34
2665 3831 3.700154 CATCCACTGTATCTCACTCGTG 58.300 50.000 0.00 0.00 32.50 4.35
2666 3832 2.099921 GCATCCACTGTATCTCACTCGT 59.900 50.000 0.00 0.00 0.00 4.18
2667 3833 2.099756 TGCATCCACTGTATCTCACTCG 59.900 50.000 0.00 0.00 0.00 4.18
2697 3863 3.501828 TGTTCAGATCACCGAAACCAATG 59.498 43.478 0.00 0.00 0.00 2.82
2782 3948 1.450312 GACTGGTGCTCATTCCCCG 60.450 63.158 0.00 0.00 0.00 5.73
2824 3990 1.456705 ATCTCTGGCCGAGGAGACC 60.457 63.158 20.18 0.00 40.71 3.85
2827 3993 0.317799 CATCATCTCTGGCCGAGGAG 59.682 60.000 19.88 16.19 40.30 3.69
2843 4009 6.975772 TGCCCGTAGTAAAAATAATTTGCATC 59.024 34.615 0.00 0.00 0.00 3.91
2870 4036 7.805071 CAGGACATTGACTACTTTGATGTTTTC 59.195 37.037 0.00 0.00 31.59 2.29
2891 4057 2.351924 TTTGAGGGTGGGCACAGGAC 62.352 60.000 0.00 0.00 0.00 3.85
2900 4066 2.364186 GGGGGCATTTGAGGGTGG 60.364 66.667 0.00 0.00 0.00 4.61
2914 4080 0.936691 ATTCTGATTTGGGGAGGGGG 59.063 55.000 0.00 0.00 0.00 5.40
2915 4081 1.570501 TCATTCTGATTTGGGGAGGGG 59.429 52.381 0.00 0.00 0.00 4.79
2916 4082 3.386932 TTCATTCTGATTTGGGGAGGG 57.613 47.619 0.00 0.00 0.00 4.30
2917 4083 3.640029 CCATTCATTCTGATTTGGGGAGG 59.360 47.826 0.00 0.00 30.63 4.30
2918 4084 4.284178 ACCATTCATTCTGATTTGGGGAG 58.716 43.478 9.90 0.00 35.52 4.30
2919 4085 4.335735 ACCATTCATTCTGATTTGGGGA 57.664 40.909 9.90 0.00 35.52 4.81
2920 4086 4.223477 ACAACCATTCATTCTGATTTGGGG 59.777 41.667 9.90 0.00 35.52 4.96
2921 4087 5.172934 CACAACCATTCATTCTGATTTGGG 58.827 41.667 9.90 0.00 35.52 4.12
2922 4088 5.047164 TCCACAACCATTCATTCTGATTTGG 60.047 40.000 5.53 5.53 36.59 3.28
2923 4089 6.028146 TCCACAACCATTCATTCTGATTTG 57.972 37.500 0.00 0.00 0.00 2.32
2924 4090 6.211986 ACATCCACAACCATTCATTCTGATTT 59.788 34.615 0.00 0.00 0.00 2.17
2925 4091 5.718130 ACATCCACAACCATTCATTCTGATT 59.282 36.000 0.00 0.00 0.00 2.57
2926 4092 5.266788 ACATCCACAACCATTCATTCTGAT 58.733 37.500 0.00 0.00 0.00 2.90
2927 4093 4.665451 ACATCCACAACCATTCATTCTGA 58.335 39.130 0.00 0.00 0.00 3.27
2928 4094 6.512253 CGATACATCCACAACCATTCATTCTG 60.512 42.308 0.00 0.00 0.00 3.02
2929 4095 5.528690 CGATACATCCACAACCATTCATTCT 59.471 40.000 0.00 0.00 0.00 2.40
2930 4096 5.751680 CGATACATCCACAACCATTCATTC 58.248 41.667 0.00 0.00 0.00 2.67
2931 4097 4.036734 GCGATACATCCACAACCATTCATT 59.963 41.667 0.00 0.00 0.00 2.57
2932 4098 3.565482 GCGATACATCCACAACCATTCAT 59.435 43.478 0.00 0.00 0.00 2.57
2933 4099 2.942376 GCGATACATCCACAACCATTCA 59.058 45.455 0.00 0.00 0.00 2.57
2934 4100 2.942376 TGCGATACATCCACAACCATTC 59.058 45.455 0.00 0.00 0.00 2.67
2935 4101 2.997980 TGCGATACATCCACAACCATT 58.002 42.857 0.00 0.00 0.00 3.16
2936 4102 2.708216 TGCGATACATCCACAACCAT 57.292 45.000 0.00 0.00 0.00 3.55
2937 4103 2.481289 TTGCGATACATCCACAACCA 57.519 45.000 0.00 0.00 0.00 3.67
2938 4104 4.104776 CAATTTGCGATACATCCACAACC 58.895 43.478 0.00 0.00 0.00 3.77
2939 4105 4.104776 CCAATTTGCGATACATCCACAAC 58.895 43.478 0.00 0.00 0.00 3.32
2940 4106 3.428725 GCCAATTTGCGATACATCCACAA 60.429 43.478 0.00 0.00 0.00 3.33
2941 4107 2.098934 GCCAATTTGCGATACATCCACA 59.901 45.455 0.00 0.00 0.00 4.17
2942 4108 2.358898 AGCCAATTTGCGATACATCCAC 59.641 45.455 0.00 0.00 36.02 4.02
2943 4109 2.618241 GAGCCAATTTGCGATACATCCA 59.382 45.455 0.00 0.00 36.02 3.41
2944 4110 2.618241 TGAGCCAATTTGCGATACATCC 59.382 45.455 0.00 0.00 36.02 3.51
2945 4111 3.304257 CCTGAGCCAATTTGCGATACATC 60.304 47.826 0.00 0.00 36.02 3.06
2946 4112 2.620115 CCTGAGCCAATTTGCGATACAT 59.380 45.455 0.00 0.00 36.02 2.29
2992 4686 0.882927 GCAACAGGACCTTGCGTACA 60.883 55.000 2.41 0.00 35.04 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.